Query 029242
Match_columns 196
No_of_seqs 56 out of 58
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pcv_A Leukotriene C4 synthase 46.1 70 0.0024 25.2 7.1 32 110-144 46-77 (156)
2 2q7r_A Arachidonate 5-lipoxyge 39.6 78 0.0027 24.9 6.4 32 110-144 50-81 (161)
3 2eap_A Lymphocyte cytosolic pr 22.4 38 0.0013 25.5 1.7 31 2-32 7-42 (90)
4 3odu_A C-X-C chemokine recepto 18.2 47 0.0016 27.6 1.6 26 129-154 414-439 (502)
5 2jdj_A HAPK, REDY-like protein 17.9 28 0.00097 26.6 0.2 16 13-28 13-28 (105)
6 2z73_A Rhodopsin; visual pigme 17.7 4E+02 0.014 21.9 7.2 22 130-151 263-284 (448)
7 3fay_A P195, RAS GTPase-activa 17.6 2.3E+02 0.0078 24.8 6.0 77 111-188 168-277 (387)
8 3eml_A Human adenosine A2A rec 17.2 2.7E+02 0.0094 22.7 6.0 57 128-192 395-452 (488)
9 3fpn_B Geobacillus stearotherm 16.6 58 0.002 23.8 1.6 25 4-28 9-37 (106)
10 2knc_B Integrin beta-3; transm 15.7 2.2E+02 0.0077 20.1 4.5 32 126-164 9-40 (79)
No 1
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=46.08 E-value=70 Score=25.17 Aligned_cols=32 Identities=6% Similarity=0.151 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 029242 110 HTLKLRVHENVKRYARNYASLFILFFACSLYQMPL 144 (196)
Q Consensus 110 ~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPi 144 (196)
-|...|.+.| +.+||-+..++.+...+..+|.
T Consensus 46 f~Ra~RAH~N---~lE~~P~fl~ll~l~~l~~~~~ 77 (156)
T 3pcv_A 46 FERVYRAQVN---CSEYFPLFLATLWVAGIFFHEG 77 (156)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHh---hHHHHHHHHHHHHHHHHcCCHH
Confidence 4667777777 4567777777777777776673
No 2
>2q7r_A Arachidonate 5-lipoxygenase-activating protein; flap, mapeg, membrane protein, lipid transport; HET: 3CS; 4.00A {Homo sapiens} SCOP: f.56.1.1 PDB: 2q7m_A*
Probab=39.58 E-value=78 Score=24.90 Aligned_cols=32 Identities=9% Similarity=0.267 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 029242 110 HTLKLRVHENVKRYARNYASLFILFFACSLYQMPL 144 (196)
Q Consensus 110 ~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPi 144 (196)
-|...|.|.| +.+|+.+..++.+.+.+..+|.
T Consensus 50 f~R~~RAh~N---~lE~~P~fl~llll~~l~g~~~ 81 (161)
T 2q7r_A 50 FERVYTANQN---CVDAYPTFLAVLWSAGLLCSQV 81 (161)
T ss_dssp HHHHHHHHHH---HTTHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHh---HHHHHHHHHHHHHHHHHcCChH
Confidence 4666777777 5678888888888888877666
No 3
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.35 E-value=38 Score=25.47 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCcccCCCccccc---CchHHHHHhhhcCc--hhHh
Q 029242 2 GKVFASNPLSLNV---PDPAFESWLRDSGY--LEIL 32 (196)
Q Consensus 2 gm~F~~NPLSLsv---p~~afe~Wlrdsg~--le~l 32 (196)
||+|..=|.-..| -..++..|||+.|| -|.+
T Consensus 7 ~m~~~~~ps~seV~~Wsp~~VadWLkk~g~~~cd~l 42 (90)
T 2eap_A 7 GMALRNVPFRSEVLGWDPDSLADYFKKLNYKDCEKA 42 (90)
T ss_dssp CSSTTCCCCHHHHTTCCTTTHHHHHHHTTCHHHHHH
T ss_pred cccccccccCccccccCHHHHHHHHHHcCCchHHHH
Confidence 7887765554433 35789999999999 4444
No 4
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=18.18 E-value=47 Score=27.62 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 029242 129 SLFILFFACSLYQMPLALVGLISSLA 154 (196)
Q Consensus 129 ivvl~v~~lsLy~hPiALI~~la~~~ 154 (196)
.++++++...+.|.|..++.++..+.
T Consensus 414 ~l~~vv~~F~icw~P~~i~~~~~~~~ 439 (502)
T 3odu_A 414 TTVILILAFFACWLPYYIGISIDSFI 439 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45555666667899998877665543
No 5
>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}
Probab=17.85 E-value=28 Score=26.59 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=14.1
Q ss_pred ccCchHHHHHhhhcCc
Q 029242 13 NVPDPAFESWLRDSGY 28 (196)
Q Consensus 13 svp~~afe~Wlrdsg~ 28 (196)
.++..+||+|.|+..|
T Consensus 13 g~d~~aFe~w~~evD~ 28 (105)
T 2jdj_A 13 VAQADAFEFWVQNVDY 28 (105)
T ss_dssp GGGHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHhchh
Confidence 4678899999999988
No 6
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=17.70 E-value=4e+02 Score=21.89 Aligned_cols=22 Identities=23% Similarity=0.313 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH
Q 029242 130 LFILFFACSLYQMPLALVGLIS 151 (196)
Q Consensus 130 vvl~v~~lsLy~hPiALI~~la 151 (196)
++++++...+.|.|..++.++.
T Consensus 263 l~~iv~~F~i~~~P~~i~~~~~ 284 (448)
T 2z73_A 263 SIVIVSQFLLSWSPYAVVALLA 284 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3444555566788887765543
No 7
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Probab=17.58 E-value=2.3e+02 Score=24.78 Aligned_cols=77 Identities=16% Similarity=0.285 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--------------------HHHHHHHHHHHHhh------c
Q 029242 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGL--------------------ISSLALWDFFKFCS------D 164 (196)
Q Consensus 111 eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiALI~~--------------------la~~~~W~fLyFlR------D 164 (196)
|.+.++.+|+... ++|+--++-.+.-+.-..|..+--+ +.++..|.|++|+- +
T Consensus 168 ev~~~l~~n~~~L-~~~~~~~~~~I~~s~~~~P~~lR~i~~~l~~~~~~kfp~~~~~~~~~~vg~flflRFi~PAIvsP~ 246 (387)
T 3fay_A 168 EVKTRLDSSIRNM-RAVTDKFLSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIIGNLLYYRYMNPAIVAPD 246 (387)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHCCCCCHHHHHSTT
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhhHHhCChH
Confidence 4445566776655 5677677777777777777766442 45677888888875 8
Q ss_pred ccCc-cch------hHHHHHHHHHhhcccce
Q 029242 165 KWNW-DRY------PVIRQVLVRIAQCVFPL 188 (196)
Q Consensus 165 ew~l-~~~------p~~~~~l~~~~q~~~~~ 188 (196)
.+|+ +.+ |-.|+-|..+||+...+
T Consensus 247 ~fgl~~~~p~~~~~~~~rr~L~liaKvLQ~l 277 (387)
T 3fay_A 247 AFDIIDLSAGGQLTTDQRRNLGSIAKMLQHA 277 (387)
T ss_dssp TTTSSCCCTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCcccCCcccCCCHHHHhHHHHHHHHHHHH
Confidence 8998 544 46788888888765443
No 8
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=17.18 E-value=2.7e+02 Score=22.68 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCc-cchhHHHHHHHHHhhcccceeeee
Q 029242 128 ASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNW-DRYPVIRQVLVRIAQCVFPLYYCL 192 (196)
Q Consensus 128 aivvl~v~~lsLy~hPiALI~~la~~~~W~fLyFlRDew~l-~~~p~~~~~l~~~~q~~~~~~~~~ 192 (196)
-.++++++...+.|.|..++.++..+ ..+.... ...-.+..+|..+.-|..++.||.
T Consensus 395 ~~l~~iv~~F~icw~P~~i~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~ 452 (488)
T 3eml_A 395 KSLAIIVGLFALCWLPLHIINCFTFF--------CPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAY 452 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc--------cCccccccHHHHHHHHHHHHHHhhhchhhhhh
Confidence 34555566666779998876655332 2221111 112224455555666677777764
No 9
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=16.57 E-value=58 Score=23.83 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=19.4
Q ss_pred cccCCCcccccCc----hHHHHHhhhcCc
Q 029242 4 VFASNPLSLNVPD----PAFESWLRDSGY 28 (196)
Q Consensus 4 ~F~~NPLSLsvp~----~afe~Wlrdsg~ 28 (196)
.|+.++|+|.+.+ .++.++|.+.||
T Consensus 9 ~~~~~~l~l~~G~~i~~~~l~~~L~~~GY 37 (106)
T 3fpn_B 9 EYRELVVSLRVGMEIERNALLRRLVDIQY 37 (106)
T ss_dssp ----CCEEEETTCBCCHHHHHHHHHHTTC
T ss_pred HHhhCCeEEECCCCcCHHHHHHHHHHcCC
Confidence 4788999998877 799999999999
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=15.72 E-value=2.2e+02 Score=20.08 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 029242 126 NYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSD 164 (196)
Q Consensus 126 NYaivvl~v~~lsLy~hPiALI~~la~~~~W~fLyFlRD 164 (196)
|...+++.+++.. -|||++. +.+|-++-...|
T Consensus 9 n~~~Iv~gvi~gi------lliGlll-lliwk~~~~i~D 40 (79)
T 2knc_B 9 DILVVLLSVMGAI------LLIGLAA-LLIWKLLITIHD 40 (79)
T ss_dssp CSHHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHH
T ss_pred CchhhHHHHHHHH------HHHHHHH-HHHHHHHHHHHH
Confidence 5555555554432 2455554 445544444433
Done!