Query 029242
Match_columns 196
No_of_seqs 56 out of 58
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 15:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029242.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029242hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uuia1 f.56.1.1 (A:2-147) Leu 51.8 19 0.0014 26.2 6.5 32 110-144 45-76 (146)
2 d2q7ra1 f.56.1.1 (A:1-139) Ara 46.0 31 0.0023 24.9 6.9 33 110-145 50-82 (139)
3 d1jdla_ a.3.1.1 (A:) Cytochrom 15.6 52 0.0038 22.4 3.0 15 16-30 63-78 (118)
4 d1j8ia_ d.9.1.1 (A:) Lymphotac 14.5 43 0.0031 22.7 2.2 20 20-41 53-72 (93)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 13.5 1.7E+02 0.012 19.1 5.3 24 85-117 3-26 (100)
6 d1q79a2 d.218.1.3 (A:19-214) P 8.9 69 0.005 24.2 1.9 24 7-30 5-35 (196)
7 d2hrva_ b.47.1.4 (A:) 2A cyste 8.3 44 0.0032 25.0 0.5 14 183-196 53-66 (139)
8 d2iida1 c.3.1.2 (A:4-319,A:433 7.8 70 0.0051 22.2 1.4 20 7-26 1-20 (370)
9 d2hzaa1 a.43.1.3 (A:1-48) Nick 7.7 58 0.0042 19.9 0.8 19 10-28 4-25 (48)
10 d1tzva_ a.79.1.1 (A:) Antiterm 7.6 94 0.0069 20.9 2.0 20 163-182 69-88 (141)
No 1
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.79 E-value=19 Score=26.20 Aligned_cols=32 Identities=6% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 029242 110 HTLKLRVHENVKRYARNYASLFILFFACSLYQMPL 144 (196)
Q Consensus 110 ~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPi 144 (196)
-|...|.|.|..+ |+-+..++.+.+.+..+|.
T Consensus 45 fera~RaH~N~~E---~~P~fL~ll~l~~l~~~~~ 76 (146)
T d2uuia1 45 FERVYRAQVNCSE---YFPLFLATLWVAGIFFHEG 76 (146)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhhhHh---hHHHHHHHHHHHHhccCHH
Confidence 5678899999665 6666666666666766785
No 2
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.01 E-value=31 Score=24.85 Aligned_cols=33 Identities=9% Similarity=0.262 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 029242 110 HTLKLRVHENVKRYARNYASLFILFFACSLYQMPLA 145 (196)
Q Consensus 110 ~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiA 145 (196)
-|...|.|.| +..|+.+..++.+.+.+..+|..
T Consensus 50 f~ra~RaH~N---~~E~~p~~L~~l~~~~l~~~~~~ 82 (139)
T d2q7ra1 50 FERVYTANQN---CVDAYPTFLAVLWSAGLLCSQVP 82 (139)
T ss_dssp HHHHHHHHHH---HTTHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHhh---hHhhHHHHHHHHHHHHhccCHHH
Confidence 4677788888 45678888888888888888864
No 3
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}
Probab=15.62 E-value=52 Score=22.39 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=10.0
Q ss_pred chHHHHHhhhc-Cchh
Q 029242 16 DPAFESWLRDS-GYLE 30 (196)
Q Consensus 16 ~~afe~Wlrds-g~le 30 (196)
++.++.||+|- +++.
T Consensus 63 ~e~L~~~l~~P~~~i~ 78 (118)
T d1jdla_ 63 PENIIAYLPDPNAFLR 78 (118)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCHHHhhc
Confidence 56788888874 3443
No 4
>d1j8ia_ d.9.1.1 (A:) Lymphotactin {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.45 E-value=43 Score=22.73 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=15.1
Q ss_pred HHHhhhcCchhHhhhccccccc
Q 029242 20 ESWLRDSGYLEILDTATTTSAN 41 (196)
Q Consensus 20 e~Wlrdsg~le~ld~~~~~~a~ 41 (196)
+.|+++ +++.||++......
T Consensus 53 ~~WVq~--~ik~Ld~k~~~~~~ 72 (93)
T d1j8ia_ 53 ATWVRD--VVRSMDRKSNTRNN 72 (93)
T ss_dssp CHHHHH--HHHHHHHHTTTTSC
T ss_pred hHHHHH--HHHHHHhhccCCCC
Confidence 679986 78999988765544
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.47 E-value=1.7e+02 Score=19.06 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=13.1
Q ss_pred cCCCCCCcchhhhccccccCCCCChHHHHHHHH
Q 029242 85 FSAKTPSWTREFIGALGSYSFPSSPHTLKLRVH 117 (196)
Q Consensus 85 l~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~ 117 (196)
+-+.+.||. .+|+++.+....++.
T Consensus 3 ~~~~P~~~q---------l~fqd~as~~a~~i~ 26 (100)
T d3dtub2 3 IIGRPQPGG---------TGFQPSASPVATQIH 26 (100)
T ss_dssp EEESCCTTC---------CSCCCCCSHHHHHHH
T ss_pred CCCCCCCCC---------cCCCCCCCHHHHHHH
Confidence 345567888 345555555444443
No 6
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.89 E-value=69 Score=24.18 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.3
Q ss_pred CCCcccccCchH-------HHHHhhhcCchh
Q 029242 7 SNPLSLNVPDPA-------FESWLRDSGYLE 30 (196)
Q Consensus 7 ~NPLSLsvp~~a-------fe~Wlrdsg~le 30 (196)
.-|+|+..|.++ ++++|++.|+.|
T Consensus 5 T~PiS~~~Pt~~D~~~s~~L~~~L~~~~~~p 35 (196)
T d1q79a2 5 TSPISLAAPKETDCLLTQKLVETLKPFGVFE 35 (196)
T ss_dssp SCCSCCCCCCHHHHHHHHHHHHHHGGGTCSC
T ss_pred CCCcccCCCChHHHHHHHHHHHHHHHcCCCC
Confidence 469999999998 999999988653
No 7
>d2hrva_ b.47.1.4 (A:) 2A cysteine proteinase {Human rhinovirus 2 [TaxId: 12130]}
Probab=8.26 E-value=44 Score=24.95 Aligned_cols=14 Identities=29% Similarity=0.861 Sum_probs=11.5
Q ss_pred hcccceeeeeccCC
Q 029242 183 QCVFPLYYCLAVDK 196 (196)
Q Consensus 183 q~~~~~~~~~~~~~ 196 (196)
||.+.+|||+.-+|
T Consensus 53 ~CttGvYYc~s~~k 66 (139)
T d2hrva_ 53 DCTQATYYCKHKNR 66 (139)
T ss_dssp CCCEEEEEEGGGTE
T ss_pred cCCCCeEEeeeCCc
Confidence 78888999987765
No 8
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=7.82 E-value=70 Score=22.15 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=16.9
Q ss_pred CCCcccccCchHHHHHhhhc
Q 029242 7 SNPLSLNVPDPAFESWLRDS 26 (196)
Q Consensus 7 ~NPLSLsvp~~afe~Wlrds 26 (196)
-|||+=++-++..|+||+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (370)
T d2iida1 1 RNPLAECFQENDYEEFLEIA 20 (370)
T ss_dssp CCTTGGGGCCTTHHHHHHHH
T ss_pred CCchHhhcCCccHHHHHHHH
Confidence 39999999999999998743
No 9
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.67 E-value=58 Score=19.94 Aligned_cols=19 Identities=21% Similarity=0.559 Sum_probs=15.3
Q ss_pred cccccCch---HHHHHhhhcCc
Q 029242 10 LSLNVPDP---AFESWLRDSGY 28 (196)
Q Consensus 10 LSLsvp~~---afe~Wlrdsg~ 28 (196)
.|.|+|++ .||+.++..||
T Consensus 4 isVslp~~Ll~~lD~~v~~~gy 25 (48)
T d2hzaa1 4 VTITLDDDLLETLDSLSQRRGY 25 (48)
T ss_dssp EEEEECHHHHHHHHHHHHHTTC
T ss_pred EEEecCHHHHHHHHHHHHHcCC
Confidence 47788885 67888999998
No 10
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}
Probab=7.61 E-value=94 Score=20.92 Aligned_cols=20 Identities=30% Similarity=0.742 Sum_probs=16.8
Q ss_pred hcccCccchhHHHHHHHHHh
Q 029242 163 SDKWNWDRYPVIRQVLVRIA 182 (196)
Q Consensus 163 RDew~l~~~p~~~~~l~~~~ 182 (196)
-++|.++|.+.+-+.++++|
T Consensus 69 ~~~~~~~rl~~~~~~iLr~a 88 (141)
T d1tzva_ 69 LEKWSLNRLSVVDRNVLRLA 88 (141)
T ss_dssp CSSSCGGGSCHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHH
Confidence 36899999988888888877
Done!