BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029243
         (196 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A5EW54|ALR_DICNV Alanine racemase OS=Dichelobacter nodosus (strain VCS1703A) GN=alr
           PE=3 SV=1
          Length = 357

 Score = 33.9 bits (76), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 15  ANSFDGVSALPLLLHMRGVISKSLYKKEASLFPRKGSKKLISDRARFIIPRSSGSSNSNG 74
           A +F    +LP+ +  +GVI+      E  L     +KK ++   R ++P       +N 
Sbjct: 136 AEAFAQAHSLPVNIQWQGVITHFACSDEDDL---THAKKQLACMDRLVLPAHWKRCYANS 192

Query: 75  SDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLE 111
           +      +  + YTR  ++L G+   + G G   GL+
Sbjct: 193 AAIFALPQAHYDYTRSGIMLYGLSPFMHGDGSAYGLQ 229


>sp|Q9Y3R5|DOP2_HUMAN Protein dopey-2 OS=Homo sapiens GN=DOPEY2 PE=1 SV=5
          Length = 2298

 Score = 30.8 bits (68), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 96   GVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGW-VSTYIFRVSNKEMTYAQQ 154
            G+ V+ +  GL+     +G+ P     V   +   G +LGW V+ ++ ++        +Q
Sbjct: 1497 GLLVSAVVRGLQPAYG-YGMHPAWVSLVTHSLPYFGKSLGWTVTPFVVQICKNLDDLVKQ 1555

Query: 155  LRDYEDKV----MQKR-----------LEGLTEAELEALIEQVEEEKRRLASGEQVN 196
                  K+      KR           LEGLT      L+EQ  + K+ +A+G+  N
Sbjct: 1556 YESESVKLSVSTTSKRENISPDYPLTLLEGLTTISHFCLLEQANQNKKTMAAGDPAN 1612


>sp|Q9SRU2|BIG_ARATH Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=1 SV=2
          Length = 5098

 Score = 30.4 bits (67), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 113  FGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTY----------AQQLRDYEDKV 162
            +G++ L AGN    I+ L L++  V   +++ SN+  T           A   RD     
Sbjct: 4212 YGMELLVAGN----IISLDLSIAQVYELVWKKSNQSSTSLTNSALLASNAAPSRDCPPMT 4267

Query: 163  MQKRLEGLTEAELEALIEQVEEEK 186
            +  RL+GL     E +I+++EE++
Sbjct: 4268 VTYRLQGLDGEATEPMIKELEEDR 4291


>sp|B1J805|SYC_PSEPW Cysteine--tRNA ligase OS=Pseudomonas putida (strain W619) GN=cysS
           PE=3 SV=1
          Length = 460

 Score = 30.0 bits (66), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 127 IVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLE-GLTEAELEA-LIEQVEE 184
           +V   L   W+     R S  E+TY + + D +DK++ +  E G T   L A +I+ + E
Sbjct: 44  MVAFDLVTRWL-----RKSGYELTYVRNITDIDDKIINRANENGETFDALTARMIDAMHE 98

Query: 185 EKRRL 189
           ++RRL
Sbjct: 99  DERRL 103


>sp|Q88IU4|SYC_PSEPK Cysteine--tRNA ligase OS=Pseudomonas putida (strain KT2440) GN=cysS
           PE=3 SV=1
          Length = 460

 Score = 30.0 bits (66), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 139 TYIFRVSNKEMTYAQQLRDYEDKVMQKRLE-GLTEAELEA-LIEQVEEEKRRL 189
           T   R S  E+TY + + D +DK++ +  E G T   L A +I+ + E++RRL
Sbjct: 51  TRWLRKSGYELTYVRNITDIDDKIINRANENGETFDALTARMIDAMHEDERRL 103


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.134    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,887,545
Number of Sequences: 539616
Number of extensions: 2820852
Number of successful extensions: 12231
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 12227
Number of HSP's gapped (non-prelim): 26
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)