Query 029243
Match_columns 196
No_of_seqs 77 out of 79
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 15:56:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sf9_A YFHH hypothetical prote 90.1 0.21 7.2E-06 39.9 3.3 36 159-194 21-56 (128)
2 3eff_K Voltage-gated potassium 88.6 1.4 4.8E-05 32.6 6.7 39 153-191 98-136 (139)
3 3oop_A LIN2960 protein; protei 83.6 2.8 9.5E-05 29.5 5.8 100 83-184 31-137 (143)
4 3s2w_A Transcriptional regulat 78.8 4.5 0.00015 29.1 5.6 100 83-184 44-150 (159)
5 2nyx_A Probable transcriptiona 78.5 6.1 0.00021 28.9 6.3 99 84-184 40-145 (168)
6 3eco_A MEPR; mutlidrug efflux 75.7 6.7 0.00023 27.2 5.6 101 83-184 25-133 (139)
7 3k0l_A Repressor protein; heli 75.2 10 0.00035 27.4 6.7 74 110-184 67-146 (162)
8 1lj9_A Transcriptional regulat 74.9 7.3 0.00025 27.1 5.7 97 83-184 23-129 (144)
9 3deu_A Transcriptional regulat 74.8 8.7 0.0003 28.3 6.3 74 110-184 75-154 (166)
10 2eth_A Transcriptional regulat 74.6 6.7 0.00023 28.0 5.6 98 83-185 38-145 (154)
11 3nrv_A Putative transcriptiona 72.7 4.5 0.00015 28.4 4.1 100 83-184 34-140 (148)
12 2yxy_A Hypothetical conserved 71.6 0.65 2.2E-05 36.5 -0.5 29 164-192 8-36 (115)
13 2gxg_A 146AA long hypothetical 71.6 6.7 0.00023 27.3 4.8 96 83-184 31-136 (146)
14 3pjs_K KCSA, voltage-gated pot 71.3 3.6 0.00012 31.6 3.6 40 154-193 126-165 (166)
15 2fbi_A Probable transcriptiona 70.5 7.2 0.00025 26.9 4.7 101 83-185 30-137 (142)
16 3tgn_A ADC operon repressor AD 70.2 13 0.00046 25.8 6.1 99 83-184 32-140 (146)
17 3e6m_A MARR family transcripti 68.8 9 0.00031 27.6 5.1 74 111-185 75-154 (161)
18 2lw1_A ABC transporter ATP-bin 68.4 15 0.0005 26.1 6.1 39 145-184 12-67 (89)
19 2fa5_A Transcriptional regulat 68.4 7.2 0.00025 27.8 4.5 71 110-184 70-149 (162)
20 4aik_A Transcriptional regulat 68.3 12 0.00042 27.4 5.8 97 83-184 25-132 (151)
21 3jw4_A Transcriptional regulat 68.2 7.1 0.00024 27.6 4.4 101 83-184 35-143 (148)
22 3bja_A Transcriptional regulat 67.5 16 0.00054 25.0 6.0 101 83-184 27-133 (139)
23 3bj6_A Transcriptional regulat 67.5 11 0.00038 26.4 5.3 97 83-184 34-140 (152)
24 2rdp_A Putative transcriptiona 66.6 18 0.00062 25.2 6.2 98 83-185 36-143 (150)
25 3s5m_A Falcilysin; M16 metallo 65.2 8.8 0.0003 38.6 5.8 40 145-184 584-623 (1193)
26 2xrh_A Protein HP0721; unknown 64.6 9.1 0.00031 29.3 4.6 40 147-187 43-85 (100)
27 3g3z_A NMB1585, transcriptiona 64.3 12 0.00041 26.2 4.9 97 83-184 25-131 (145)
28 2a61_A Transcriptional regulat 64.0 12 0.00041 25.9 4.8 97 83-184 27-133 (145)
29 3bpv_A Transcriptional regulat 64.0 15 0.00052 25.2 5.3 97 83-184 23-129 (138)
30 3bro_A Transcriptional regulat 63.8 17 0.00058 25.0 5.6 96 84-184 29-136 (141)
31 2q97_T Toxofilin, actin, alpha 63.5 8.4 0.00029 30.6 4.3 34 152-187 65-98 (129)
32 3h90_A Ferrous-iron efflux pum 61.9 5.4 0.00018 32.6 3.1 23 81-103 62-87 (283)
33 1s3j_A YUSO protein; structura 61.3 19 0.00065 25.3 5.5 96 84-184 32-137 (155)
34 2rq5_A Protein jumonji; develo 59.4 6.4 0.00022 30.0 2.9 81 85-189 37-119 (121)
35 3j1z_P YIIP, cation efflux fam 57.2 6.6 0.00022 32.8 2.9 31 81-111 71-105 (306)
36 3u2r_A Regulatory protein MARR 56.5 21 0.00071 25.9 5.2 100 83-184 40-148 (168)
37 3nqo_A MARR-family transcripti 55.0 27 0.00091 26.3 5.7 71 110-184 64-143 (189)
38 3fm5_A Transcriptional regulat 54.1 29 0.001 24.4 5.5 71 110-184 61-140 (150)
39 3boq_A Transcriptional regulat 53.9 29 0.001 24.5 5.5 77 110-187 69-151 (160)
40 3ech_A MEXR, multidrug resista 50.2 38 0.0013 23.6 5.5 98 85-184 33-137 (142)
41 3kkj_A Amine oxidase, flavin-c 49.5 4 0.00014 28.0 0.3 28 87-117 1-28 (336)
42 1jgs_A Multiple antibiotic res 48.8 24 0.00082 24.2 4.3 96 83-183 28-134 (138)
43 2fbh_A Transcriptional regulat 48.6 38 0.0013 23.3 5.3 74 110-184 59-138 (146)
44 3hls_A Guanylate cyclase solub 48.3 16 0.00054 25.3 3.2 26 162-188 21-46 (66)
45 2nnn_A Probable transcriptiona 47.8 36 0.0012 23.2 5.0 70 110-183 59-137 (140)
46 2hr3_A Probable transcriptiona 46.9 52 0.0018 22.7 5.8 97 84-184 30-137 (147)
47 1g6u_A Domain swapped dimer; d 45.7 13 0.00046 25.0 2.4 20 166-185 13-32 (48)
48 3lfp_A CSP231I C protein; tran 44.4 38 0.0013 22.8 4.7 55 114-185 41-95 (98)
49 3cjn_A Transcriptional regulat 44.0 59 0.002 23.0 5.8 73 110-186 73-154 (162)
50 2g9w_A Conserved hypothetical 43.5 26 0.00091 25.3 4.0 24 161-184 98-121 (138)
51 1uw0_A DNA ligase III; DNA rep 42.1 18 0.00061 27.2 2.9 23 167-189 79-101 (117)
52 1b0n_A Protein (SINR protein); 41.6 57 0.002 21.8 5.2 70 113-187 36-107 (111)
53 2dmj_A Poly (ADP-ribose) polym 40.8 14 0.00048 27.3 2.1 24 167-190 81-104 (106)
54 3kp7_A Transcriptional regulat 39.5 47 0.0016 23.3 4.7 96 83-184 32-139 (151)
55 3oz2_A Digeranylgeranylglycero 39.2 6.7 0.00023 30.8 0.1 29 86-116 1-29 (397)
56 1utr_A Uteroglobin; clara cell 36.6 24 0.00083 25.6 2.8 36 149-184 40-83 (96)
57 3kh1_A Predicted metal-depende 36.4 25 0.00087 28.6 3.2 40 145-184 81-128 (200)
58 3h4p_a Proteasome subunit beta 36.3 8.2 0.00028 30.5 0.2 25 166-190 186-210 (219)
59 3cgv_A Geranylgeranyl reductas 36.2 8 0.00027 30.9 0.1 28 86-115 1-28 (397)
60 3ayf_A Nitric oxide reductase; 36.0 17 0.00059 35.5 2.4 34 155-188 111-144 (800)
61 3cdh_A Transcriptional regulat 35.5 21 0.00072 25.2 2.3 70 111-184 65-143 (155)
62 3bdd_A Regulatory protein MARR 35.3 31 0.001 23.6 3.1 71 110-184 52-132 (142)
63 3eff_K Voltage-gated potassium 35.2 5.1 0.00017 29.5 -1.1 30 152-182 105-134 (139)
64 2qww_A Transcriptional regulat 35.2 46 0.0016 23.3 4.1 71 110-184 62-145 (154)
65 3ukm_A Potassium channel subfa 34.9 72 0.0025 27.3 5.9 21 165-185 55-75 (280)
66 3pjs_K KCSA, voltage-gated pot 34.7 11 0.00038 28.8 0.8 25 160-185 140-164 (166)
67 2vqe_M 30S ribosomal protein S 34.5 15 0.0005 28.6 1.4 21 164-184 42-62 (126)
68 3lqv_P Splicing factor 3B subu 34.4 24 0.00081 23.1 2.2 26 154-179 6-32 (39)
69 1r73_A TM1492, 50S ribosomal p 33.7 28 0.00097 23.9 2.6 20 166-185 5-24 (66)
70 1jw2_A Hemolysin expression mo 33.7 1.3E+02 0.0043 21.8 6.1 47 146-192 3-57 (72)
71 3fz4_A Putative arsenate reduc 32.6 34 0.0012 25.0 3.1 25 157-181 66-90 (120)
72 3ivp_A Putative transposon-rel 32.6 56 0.0019 22.8 4.1 62 113-184 47-108 (126)
73 1jfi_B DR1 protein, transcript 32.1 74 0.0025 26.0 5.3 63 110-184 61-130 (179)
74 3rp8_A Flavoprotein monooxygen 31.9 8.5 0.00029 31.5 -0.3 32 83-116 17-48 (407)
75 1v9x_A Poly (ADP-ribose) polym 31.8 13 0.00043 28.2 0.6 24 166-189 74-97 (114)
76 1utg_A Uteroglobin; steroid bi 31.6 52 0.0018 22.6 3.7 35 150-184 20-62 (70)
77 3od8_A Poly [ADP-ribose] polym 30.6 23 0.0008 27.1 1.9 20 165-184 92-111 (116)
78 3odc_A Poly [ADP-ribose] polym 30.2 13 0.00045 28.0 0.5 21 167-187 81-101 (111)
79 3iz6_M 40S ribosomal protein S 29.8 17 0.00059 29.1 1.1 21 164-184 53-73 (152)
80 3j20_O 30S ribosomal protein S 29.6 18 0.00062 28.8 1.2 22 164-185 48-69 (148)
81 3ngm_A Extracellular lipase; s 29.3 32 0.0011 29.6 2.8 39 153-191 272-312 (319)
82 2e0t_A Dual specificity phosph 29.0 19 0.00063 25.8 1.1 24 143-166 126-149 (151)
83 4ham_A LMO2241 protein; struct 28.8 99 0.0034 22.3 5.0 28 159-186 99-126 (134)
84 2fbk_A Transcriptional regulat 28.7 78 0.0027 23.2 4.5 102 83-185 63-173 (181)
85 4h33_A LMO2059 protein; bilaye 28.3 12 0.00042 27.9 0.0 19 163-181 115-133 (137)
86 2bv6_A MGRA, HTH-type transcri 28.1 62 0.0021 22.3 3.7 99 83-185 31-136 (142)
87 2jns_A Bromodomain-containing 28.0 71 0.0024 22.7 4.0 34 146-185 15-48 (90)
88 3j21_W 50S ribosomal protein L 27.9 40 0.0014 23.6 2.6 21 166-186 5-25 (72)
89 1wz6_A HMG-box transcription f 27.8 80 0.0027 21.1 4.1 29 160-188 39-67 (82)
90 1hry_A Human SRY; DNA, DNA-bin 27.6 84 0.0029 20.5 4.1 29 160-188 36-64 (76)
91 3zs9_C Golgi to ER traffic pro 27.2 52 0.0018 21.4 2.8 20 168-187 2-21 (38)
92 1vq8_V 50S ribosomal protein L 27.1 42 0.0015 23.4 2.6 20 166-185 8-27 (71)
93 2ki0_A DS119; beta-alpha-beta, 27.1 42 0.0014 21.4 2.3 15 171-185 13-27 (36)
94 4gde_A UDP-galactopyranose mut 26.9 15 0.0005 30.7 0.2 26 90-116 11-36 (513)
95 3gkx_A Putative ARSC family re 26.9 31 0.0011 25.2 2.0 25 157-181 67-91 (120)
96 3fgh_A Transcription factor A, 26.8 90 0.0031 20.0 4.1 28 160-187 30-57 (67)
97 2zjr_V 50S ribosomal protein L 26.7 35 0.0012 23.5 2.1 19 167-185 6-24 (67)
98 1sd4_A Penicillinase repressor 26.7 79 0.0027 21.7 4.0 18 168-185 106-123 (126)
99 1q5q_H Proteasome beta-type su 26.4 34 0.0012 27.2 2.3 24 167-190 202-225 (235)
100 1ccd_A Clara cell 17 KD protei 26.4 50 0.0017 23.2 2.9 35 150-184 22-64 (77)
101 2cs1_A PMS1 protein homolog 1; 26.1 1.1E+02 0.0038 20.9 4.7 27 160-186 39-65 (92)
102 3u5c_S 40S ribosomal protein S 26.0 17 0.00059 28.9 0.5 21 164-184 55-75 (146)
103 4a3n_A Transcription factor SO 25.7 91 0.0031 19.8 3.9 29 160-188 34-62 (71)
104 2eqz_A High mobility group pro 25.6 89 0.003 21.1 4.0 27 161-187 50-76 (86)
105 3r8n_M 30S ribosomal protein S 25.3 21 0.00072 27.2 0.8 19 164-182 41-59 (114)
106 2xzm_M RPS18E; ribosome, trans 25.2 22 0.00074 28.6 0.9 21 164-184 55-75 (155)
107 3v2d_2 50S ribosomal protein L 25.2 56 0.0019 22.9 3.0 22 165-186 11-32 (72)
108 1ryp_D 20S proteasome; multica 25.0 31 0.001 27.4 1.8 22 167-188 219-240 (241)
109 1okr_A MECI, methicillin resis 24.6 1.3E+02 0.0045 20.4 4.8 21 163-183 99-121 (123)
110 3r8s_Y 50S ribosomal protein L 24.6 30 0.001 23.6 1.4 19 167-185 6-24 (63)
111 1gt0_D Transcription factor SO 24.5 99 0.0034 20.4 4.0 28 160-187 34-61 (80)
112 2rdq_A 1-deoxypentalenic acid 24.3 15 0.0005 29.2 -0.3 41 142-185 11-55 (288)
113 1j2p_A Alpha-ring, proteasome 23.8 39 0.0013 27.0 2.2 24 166-189 220-243 (246)
114 4b8x_A SCO5413, possible MARR- 23.8 66 0.0023 23.1 3.3 93 83-184 29-136 (147)
115 1qle_D Cytochrome AA3, ccytoch 23.4 30 0.001 22.5 1.2 14 146-159 5-18 (43)
116 2lef_A LEF-1 HMG, protein (lym 23.4 1.1E+02 0.0039 20.5 4.2 28 160-187 34-61 (86)
117 2jp3_A FXYD domain-containing 23.3 80 0.0027 22.7 3.5 29 79-107 4-36 (67)
118 2qe9_A Uncharacterized protein 23.3 79 0.0027 23.4 3.7 27 150-176 18-47 (178)
119 2e6o_A HMG box-containing prot 23.1 93 0.0032 21.2 3.8 27 161-187 50-76 (87)
120 3lov_A Protoporphyrinogen oxid 22.4 17 0.00056 30.4 -0.3 27 86-114 1-27 (475)
121 3kin_B Kinesin heavy chain; mo 21.8 1.8E+02 0.0061 21.6 5.4 40 144-186 77-116 (117)
122 1wgf_A Upstream binding factor 21.8 98 0.0034 21.2 3.7 29 160-188 52-80 (90)
123 1ryp_E 20S proteasome; multica 21.7 49 0.0017 26.2 2.4 21 167-187 220-240 (242)
124 3ezz_A Dual specificity protei 21.2 50 0.0017 23.4 2.1 20 144-163 124-143 (144)
125 3jyw_X 60S ribosomal protein L 21.1 46 0.0016 24.5 1.9 21 165-185 6-26 (86)
126 2a9u_A Ubiquitin carboxyl-term 20.9 1.2E+02 0.0041 23.7 4.4 13 157-169 114-126 (144)
127 3u2b_C Transcription factor SO 20.9 1.2E+02 0.0043 19.7 3.9 28 160-187 34-61 (79)
128 1h1o_A Cytochrome C-552; elect 20.4 1.6E+02 0.0053 21.4 4.7 31 152-182 145-180 (183)
129 3eev_A Chloramphenicol acetylt 20.4 15 0.00052 28.5 -0.8 27 160-186 184-210 (212)
130 1v63_A Nucleolar transcription 20.1 1.2E+02 0.0043 21.4 4.0 14 168-181 76-89 (101)
No 1
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=90.14 E-value=0.21 Score=39.91 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccCCC
Q 029243 159 EDKVMQKRLEGLTEAELEALIEQVEEEKRRLASGEQ 194 (196)
Q Consensus 159 E~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~~~~ 194 (196)
....|+||+.+||++||+.-.+.+.++...+.+...
T Consensus 21 ~~~~mekrySeMS~~EL~~EI~~L~EKaRKAEq~Gi 56 (128)
T 1sf9_A 21 QSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHGI 56 (128)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ecchhhHHHHHcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 355689999999999999888888776655544433
No 2
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=88.61 E-value=1.4 Score=32.63 Aligned_cols=39 Identities=23% Similarity=0.143 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcccc
Q 029243 153 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRRLAS 191 (196)
Q Consensus 153 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~ 191 (196)
+++++......++...++-.++.++|.+++++.+++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~le~~~~~ 136 (139)
T 3eff_K 98 QERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERMLDD 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445556656556666778888888875554443
No 3
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=83.64 E-value=2.8 Score=29.49 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=62.8
Q ss_pred CCccccchhhhhhhHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQL 155 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~ly-~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~ 155 (196)
.++|++..+...+-...-- |+.-. -.-..+|++...+.....-+.=-|+ |-..- .+.++.--+-..+.++.
T Consensus 31 ~~~~lt~~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Gl-v~r~~~~~D~R~~~~~LT~~G~~~~~~~ 108 (143)
T 3oop_A 31 ASYDVTPEQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRKEL-IVREISTEDRRISLLSLTDKGRKETTEL 108 (143)
T ss_dssp TTSSSCHHHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEEEC----CCSCEEEECHHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCC-eeccCCCccCceeeeeECHHHHHHHHHH
Confidence 4678877776554433211 32222 2245788887776666666655554 21111 22333444445677778
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 156 RDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 156 kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
....++..++-++.|++||++.+.+-++.
T Consensus 109 ~~~~~~~~~~~~~~l~~~e~~~l~~~L~~ 137 (143)
T 3oop_A 109 RDIVEASCEKMFAGVTRTDLEQFTAILKN 137 (143)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88888899999999999999999887765
No 4
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=78.83 E-value=4.5 Score=29.11 Aligned_cols=100 Identities=9% Similarity=0.080 Sum_probs=60.3
Q ss_pred CCccccchhhhhhhHHHHHHHHHH-HHhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYGL-KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQL 155 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~l-y~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~ 155 (196)
.++|++..+...+-...- -|+.- --.-..+|++...+.-.+.-+.=-|+ |-..- .+.++.-.+-..+.++.
T Consensus 44 ~~~~lt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Gl-v~r~~~~~DrR~~~l~LT~~G~~~~~~~ 121 (159)
T 3s2w_A 44 EPYGIGSGQFPFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVDEGY-VFRQRDEKDRRSYRVFLTEKGKKLEPDM 121 (159)
T ss_dssp GGGTCCTTTHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEEEECC---CCEEEEECHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC-EEEecCCCCCCeeEEEECHHHHHHHHHH
Confidence 457777666544333221 12111 12244778877666666666555554 22211 22334444445667777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 156 RDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 156 kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
.+..++..++-++.++++|++.|.+-++.
T Consensus 122 ~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 150 (159)
T 3s2w_A 122 KKIASEWGEILFSSFDDRQRREITNSLEI 150 (159)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888899999999999998887765
No 5
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=78.53 E-value=6.1 Score=28.95 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=59.9
Q ss_pred CccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHH
Q 029243 84 PFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLR 156 (196)
Q Consensus 84 pfgMtR~DVI~IGlgvfllGg~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~k 156 (196)
++|++..+..++-.+.- -|.. .--+-..+|++..++.-.++-+-=-|+ |-..- .+.+++--+-..+.++..
T Consensus 40 ~~~lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~~Gl-V~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 117 (168)
T 2nyx_A 40 DENITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVGAEL-IDRLPHPTSRRELLAALTKRGRDVVRQVT 117 (168)
T ss_dssp CSSCCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTS-EEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCC-EEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 56777666554433321 1211 222245788887777776666666654 22211 123334344455667777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 157 DYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 157 dYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
+.-.+.+++-++.|++||++.|.+-+++
T Consensus 118 ~~~~~~~~~~~~~l~~ee~~~l~~~L~~ 145 (168)
T 2nyx_A 118 EHRRTEIARIVEQMAPAERHGLVRALTA 145 (168)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7778888999999999999888877765
No 6
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=75.73 E-value=6.7 Score=27.25 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=61.1
Q ss_pred CCccccchhhhhhhHHHHHH--HHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVI--GYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQ 154 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfll--Gg~ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ 154 (196)
.++|++..+...+....--- |.-.--.-..+|++...+.-...-+-=-|+ |-..- .+..+.--+-..+.++
T Consensus 25 ~~~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gl-i~r~~~~~D~R~~~~~LT~~G~~~~~~ 103 (139)
T 3eco_A 25 EQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKL-IYRYVDAQDTRRKNIGLTTSGIKLVEA 103 (139)
T ss_dssp GGGTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEEEECCC--CCEEEEECHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCC-EeecCCCCCCCeeeeEECHHHHHHHHH
Confidence 45777766554443322110 111112244788887766666666655554 22221 2334444444667777
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 155 LRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 155 ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
.....++..++-++.|+|+|++.|.+-++.
T Consensus 104 ~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 133 (139)
T 3eco_A 104 FTSIFDEMEQTLVSQLSEEENEQMKANLTK 133 (139)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 777778889999999999999998887765
No 7
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=75.18 E-value=10 Score=27.39 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=48.8
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029243 110 LELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 183 (196)
Q Consensus 110 Lq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE 183 (196)
-..+|++.....-.+.-+-=-|+ |--.- .+.++.--+-..+.++......+..+.-++.|+++|++.|.+-++
T Consensus 67 a~~l~~~~~tvs~~l~~Le~~Gl-v~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~ 145 (162)
T 3k0l_A 67 AERSFIKPQSANKILQDLLANGW-IEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQQLEAQMLQGVDINLAFLIRNNLE 145 (162)
T ss_dssp HHHHTSCGGGHHHHHHHHHHTTS-EEEEECCSSSCCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCcC-eEecCCCCcCCeeEeEECHhHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34778877776666666655554 11111 123333334455667777777888888899999999999888777
Q ss_pred H
Q 029243 184 E 184 (196)
Q Consensus 184 ~ 184 (196)
+
T Consensus 146 ~ 146 (162)
T 3k0l_A 146 L 146 (162)
T ss_dssp H
T ss_pred H
Confidence 6
No 8
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=74.88 E-value=7.3 Score=27.11 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYA 152 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SY---------lfRV~tk~MTY~ 152 (196)
.++|++..+...+....- -|+. .--.-..+|++.....-...-+-=-| |+-.. .++.-.+-..+.
T Consensus 23 ~~~~lt~~~~~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le~~g----li~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 23 KELSLTRGQYLYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLEEQG----FIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp GGGTCTTTHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCC----CEEeecCCCCCceeeeEEChhHHHHH
Confidence 456777666554433221 1211 12224477887666555555555554 44332 233333344566
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 153 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 153 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
++..+..++..+.-++.|++||++.+.+-++.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 129 (144)
T 1lj9_A 98 PIIVRENQHSNQVALQGLSEVEISQLADYLVR 129 (144)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777778888899999999999887766554
No 9
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=74.79 E-value=8.7 Score=28.33 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=51.8
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029243 110 LELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 183 (196)
Q Consensus 110 Lq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE 183 (196)
-+.+|++...+...+.-+-=-|+ |-..- .+..+.--+-..+.++..+..++.+++-++.|++||++.|.+-++
T Consensus 75 a~~l~i~~~tvs~~l~~Le~~Gl-V~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~ 153 (166)
T 3deu_A 75 AKAIGIEQPSLVRTLDQLEDKGL-ISRQTCASDRRAKRIKLTEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIA 153 (166)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTS-EEEC--------CEEEECGGGHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHCCCHhhHHHHHHHHHHCCC-EEeeCCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44677776666655555555554 22221 144555566677888888888999999999999999999888777
Q ss_pred H
Q 029243 184 E 184 (196)
Q Consensus 184 ~ 184 (196)
+
T Consensus 154 ~ 154 (166)
T 3deu_A 154 K 154 (166)
T ss_dssp H
T ss_pred H
Confidence 6
No 10
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=74.64 E-value=6.7 Score=28.00 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=57.1
Q ss_pred CCccccchhhhhhhHHHHHHHH-HHHHhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGY-GLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYA 152 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg-~ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S---------YlfRV~tk~MTY~ 152 (196)
.++|++..+..++-...- -|. -.--+-..+|++.....-...-+.=-| ||.- +.+++--+--.+.
T Consensus 38 ~~~~lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~G----li~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 38 EISDMKTTELYAFLYVAL-FGPKKMKEIAEFLSTTKSNVTNVVDSLEKRG----LVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHSBHHHHHHHHHHHH-HCCBCHHHHHHHTTSCHHHHHHHHHHHHHTT----SEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEeeCCCCCcceeEEEECHHHHHHH
Confidence 567777666544433221 121 112234477877665555555554444 4432 2233333334456
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 029243 153 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 153 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~E 185 (196)
++..+...+.+++-++.|++||++.|.+-+++-
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l 145 (154)
T 2eth_A 113 GEILSNFESLLKSVLEKFSEEDFKVVSEGFNRM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 666666678888889999999999988877763
No 11
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=72.65 E-value=4.5 Score=28.43 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=60.9
Q ss_pred CCccccchhhhhhhHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQL 155 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~ly-~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~ 155 (196)
.++|++..+..++.... --|..-. -.-..+|++.....-...-+-=-|+ |-..- .+.++.--+-..+.++.
T Consensus 34 ~~~~l~~~~~~iL~~l~-~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gl-v~r~~~~~D~R~~~~~lT~~G~~~~~~~ 111 (148)
T 3nrv_A 34 QKFGIGMTEWRIISVLS-SASDCSVQKISDILGLDKAAVSRTVKKLEEKKY-IEVNGHSEDKRTYAINLTEMGQELYEVA 111 (148)
T ss_dssp GGGTCCHHHHHHHHHHH-HSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEC---------CCBEECHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHH-cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC-EEeecCCCCcceeEeEECHhHHHHHHHH
Confidence 46888887765544332 1121111 1245788877666666555555554 22111 23344444455677777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 156 RDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 156 kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
....++..+.-++.++++|++.|.+-+++
T Consensus 112 ~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 140 (148)
T 3nrv_A 112 SDFAIEREKQLLEEFEEAEKDQLFILLKK 140 (148)
T ss_dssp HHHTHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888999999999999998887765
No 12
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=71.62 E-value=0.65 Score=36.50 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=22.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccccC
Q 029243 164 QKRLEGLTEAELEALIEQVEEEKRRLASG 192 (196)
Q Consensus 164 QKRleeLtpEEle~L~aEIE~Ek~~~~~~ 192 (196)
+||+.+||++||+.-.+.+.++...+.+.
T Consensus 8 ekrySeMS~~EL~~EI~~L~ekarKAEq~ 36 (115)
T 2yxy_A 8 QKRYSEMTKEELQQEIAMLTEKARKAEQM 36 (115)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 58999999999998888887765554443
No 13
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=71.57 E-value=6.7 Score=27.27 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=57.6
Q ss_pred CCccccchhhhhhhHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYA 152 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~ly-~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S---------YlfRV~tk~MTY~ 152 (196)
.++|++..+...+.... -|..-. -.-..+|++.....-...-+-=-| |+.. +.++.-.+-..+.
T Consensus 31 ~~~~l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~~g----lv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 31 GELNLSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEEMG----LVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HTTTCCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHHCC----CEEeecCCCCCceEEEEECHHHHHHH
Confidence 45677766655544332 222111 124477877665555555554444 4432 2233333345566
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 153 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 153 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
++.........++-++.|+++|++.|.+-+++
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 136 (146)
T 2gxg_A 105 NKGIEIYKKLANEVTGDLSEDEVILVLDKISK 136 (146)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777778888889999999999888877665
No 14
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=71.31 E-value=3.6 Score=31.59 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccCC
Q 029243 154 QLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRRLASGE 193 (196)
Q Consensus 154 Q~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~~~ 193 (196)
++++..+...++...+.-.++.+.|.+++++-+++...++
T Consensus 126 ~~~~~~~~~~~~~~~~~l~~~i~~L~~~l~~le~~~~~~r 165 (166)
T 3pjs_K 126 QQQQQFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDNR 165 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333333444444444445666788888877666555544
No 15
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.52 E-value=7.2 Score=26.88 Aligned_cols=101 Identities=15% Similarity=0.064 Sum_probs=58.6
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQL 155 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~ 155 (196)
.++|++..+..++....- -|.. .--.-..+|++.....-..+-+-=-|+ |-... .+.++.-.+--.+.++.
T Consensus 30 ~~~~lt~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~~vs~~l~~Le~~gl-v~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (142)
T 2fbi_A 30 NQHGLTEQQWRVIRILRQ-QGEMESYQLANQACILRPSMTGVLARLERDGI-VRRWKAPKDQRRVYVNLTEKGQQCFVSM 107 (142)
T ss_dssp HHHTCCHHHHHHHHHHHH-HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTS-EEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCC-EEeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 367777766655443321 1211 112244778876666555555555554 22111 12233333334566666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 029243 156 RDYEDKVMQKRLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 156 kdYE~avLQKRleeLtpEEle~L~aEIE~E 185 (196)
.+..++..++-++.+++||++.+.+-+++-
T Consensus 108 ~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l 137 (142)
T 2fbi_A 108 SGDMEKNYQRIQERFGEEKLAQLLELLNEL 137 (142)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 677788888889999999999988877653
No 16
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=70.20 E-value=13 Score=25.78 Aligned_cols=99 Identities=8% Similarity=0.047 Sum_probs=63.0
Q ss_pred CCccccchhhhhhhHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQL 155 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~ly-~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~ 155 (196)
.++|++..+...+...- -++.-. -.-..+|++.....-...-+-=-|+ |-..- .+.++.-.+-..+.++.
T Consensus 32 ~~~~lt~~~~~iL~~l~--~~~~t~~eLa~~l~~s~~tvs~~l~~L~~~Gl-v~r~~~~~d~R~~~~~lT~~g~~~~~~~ 108 (146)
T 3tgn_A 32 SEVALTNTQEHILMLLS--EESLTNSELARRLNVSQAAVTKAIKSLVKEGM-LETSKDSKDARVIFYQLTDLARPIAEEH 108 (146)
T ss_dssp CSSCCCHHHHHHHHHHT--TCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEC----------CCEECGGGHHHHHHH
T ss_pred hccCCCHHHHHHHHHHH--hCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC-eEeccCCCCCceeEEEECHhHHHHHHHH
Confidence 57888877766554332 121111 1134778877666555555555554 22222 15566666777888888
Q ss_pred H---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 156 R---DYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 156 k---dYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
. .......+.-++.+++||++.|.+-+++
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 140 (146)
T 3tgn_A 109 HHHHEHTLLTYEQVATQFTPNEQKVIQRFLTA 140 (146)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7 7778889999999999999998887765
No 17
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=68.77 E-value=9 Score=27.63 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=47.2
Q ss_pred HHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 111 ELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 111 q~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
..+|++.....-...-+-=-|+ |--.- .+.++.--+-..+.++......+.++.-++.+++||++.+.+-+++
T Consensus 75 ~~l~~~~~~vs~~l~~Le~~Gl-v~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~ 153 (161)
T 3e6m_A 75 TLGVMEQSTTSRTVDQLVDEGL-AARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGE 153 (161)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTS-EEECC---CCCSCEEEECHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHCCC-EEeeCCcccCCeeEeeECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4677776655555555554443 11111 1223333344556777777778888999999999999999887766
Q ss_pred H
Q 029243 185 E 185 (196)
Q Consensus 185 E 185 (196)
-
T Consensus 154 l 154 (161)
T 3e6m_A 154 I 154 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 18
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=68.43 E-value=15 Score=26.07 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=22.1
Q ss_pred ecCCccHHHHHHHHH------------HHHHHHHHhc-----CCHHHHHHHHHHHHH
Q 029243 145 SNKEMTYAQQLRDYE------------DKVMQKRLEG-----LTEAELEALIEQVEE 184 (196)
Q Consensus 145 ~tk~MTY~qQ~kdYE------------~avLQKRlee-----LtpEEle~L~aEIE~ 184 (196)
-.+++||.+||+ ++ -+.|+..+.. =+++++++|++++++
T Consensus 12 ~~~KLSykeqrE-le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~ 67 (89)
T 2lw1_A 12 SSSKLSYKLQRE-LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAA 67 (89)
T ss_dssp SSCSCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence 357899999874 43 2334444432 245566666655554
No 19
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=68.38 E-value=7.2 Score=27.80 Aligned_cols=71 Identities=10% Similarity=0.185 Sum_probs=45.0
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029243 110 LELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIE 180 (196)
Q Consensus 110 Lq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S---------YlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~a 180 (196)
-..+|++.....-..+-+.=-| ||-- +.++.-.+-..+.++..+...+..+.-++.++++|++.|.+
T Consensus 70 a~~l~is~~tvs~~l~~Le~~g----lv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~ 145 (162)
T 2fa5_A 70 SDRTAMDKVAVSRAVARLLERG----FIRRETHGDDRRRSMLALSPAGRQVYETVAPLVNEMEQRLMSVFSAEEQQTLER 145 (162)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTT----SEEC---------CCCEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC----CEeeecCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3467766655554444444444 4432 22333333445667777777888888999999999988877
Q ss_pred HHHH
Q 029243 181 QVEE 184 (196)
Q Consensus 181 EIE~ 184 (196)
-++.
T Consensus 146 ~l~~ 149 (162)
T 2fa5_A 146 LIDR 149 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 20
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=68.27 E-value=12 Score=27.43 Aligned_cols=97 Identities=10% Similarity=0.143 Sum_probs=63.3
Q ss_pred CCccccchhhhhhhHHHHHHHHHH--HHhhHHhCCCcccchhHHHHHHHhhhhhheee---------eeeeeeecCCccH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYGL--KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS---------TYIFRVSNKEMTY 151 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~l--y~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~---------SYlfRV~tk~MTY 151 (196)
.|||.|..+...+.... -.|.+. --.-..+|+|.....-.+.-+-=-|+ |- .+..+.--+-...
T Consensus 25 ~~~gLt~~q~~vL~~L~-~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~Gl----V~R~~~~~DrR~~~l~LT~~G~~~ 99 (151)
T 4aik_A 25 KPLELTQTHWVTLYNIN-RLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGL----ITRHTSANDRRAKRIKLTEQSSPI 99 (151)
T ss_dssp GGGCCCHHHHHHHHHHH-HSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTS----EEEEECSSCTTCEEEEECGGGHHH
T ss_pred HHcCCCHHHHHHHHHHH-HcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCC----eEeecCCCCCcchhhhcCHHHHHH
Confidence 57888877754432221 112221 12345788888777766666655554 33 2344455555667
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 152 AQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 152 ~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
.++.....++..++-++.|||||++.|..=+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~k 132 (151)
T 4aik_A 100 IEQVDGVISSTRKEILGGISSDEIAVLSGLIDK 132 (151)
T ss_dssp HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 888888888999999999999999887665554
No 21
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=68.21 E-value=7.1 Score=27.60 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=55.1
Q ss_pred CCccccchhhhhhhHHHHHH-HHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVI-GYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQ 154 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfll-Gg~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ 154 (196)
.++|+|..+...+....--- |+. .--.-..+|++.....-.+.-+-=-|+ |-..- .+..+.--+--.+.++
T Consensus 35 ~~~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Gl-v~r~~~~~DrR~~~~~LT~~G~~~~~~ 113 (148)
T 3jw4_A 35 AELGLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGY-IERRIPENNARQKNIYVLPKGAALVEE 113 (148)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTS-BCCC--------CCCCBCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCC-EEeeCCCCCchhheeeECHHHHHHHHH
Confidence 45677766554433322110 111 112244778887777777666666654 22221 1223333344556777
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 155 LRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 155 ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
.....++..++-++.|+|+|++.+.+-+++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~ 143 (148)
T 3jw4_A 114 FNNIFLEVEESITKGLTKDEQKQLMSILIK 143 (148)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 777778888888999999999999887765
No 22
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=67.48 E-value=16 Score=24.99 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=58.2
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheee-----eeeeeeecCCccHHHHHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS-----TYIFRVSNKEMTYAQQLR 156 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~-----SYlfRV~tk~MTY~qQ~k 156 (196)
.++|++..+...+-...- -|.. .--.-..+|++.....-...-+.=-|++.--.. .+.++.--+--.+.++..
T Consensus 27 ~~~~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (139)
T 3bja_A 27 EQYDISYVQFGVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVD 105 (139)
T ss_dssp GGGTCCHHHHHHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHH
Confidence 467777776554433321 1211 122245788888777766666666554211100 112223233344556666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 157 DYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 157 dYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
....+.++.-++.+++||++.+.+-+++
T Consensus 106 ~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 133 (139)
T 3bja_A 106 VQYSDFLKENCGCFTKEEEGILEDLLLK 133 (139)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6667788888999999999998877765
No 23
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=67.47 E-value=11 Score=26.37 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=57.4
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYA 152 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SY---------lfRV~tk~MTY~ 152 (196)
.++|++..+..++....- -|.. .--+-..+|++.....-...-+-=-|+ |--. .++.--+-..+.
T Consensus 34 ~~~~lt~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Gl----v~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 34 LREGVTVGQRAILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQRAGL----IERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHTTCCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTS----EEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC----eeecCCcccccceeeEEChhhHHHH
Confidence 356776666544433221 1211 112244778877666666655555554 3321 233333344566
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 153 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 153 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
++......+.++.-++.++++|++.|.+-++.
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 140 (152)
T 3bj6_A 109 TAIRADEMAKLALFSEGFSSVELTAYHKVQLA 140 (152)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66777778888889999999999988876665
No 24
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=66.55 E-value=18 Score=25.20 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=56.6
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYA 152 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S---------YlfRV~tk~MTY~ 152 (196)
.++|++..+..++....- -|.. .--.-..+|++.....-...-+.=-|+ |-. +.++.-.+-..+.
T Consensus 36 ~~~~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gl----v~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 36 TNYPITPPQFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMERNGL----VARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp TTSSSCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTS----EEEEECCC---CEEEEECHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCC----eeecCCCCCcceeEeEECHhHHHHH
Confidence 356777666544433221 1211 122234678776665555555555544 332 1223333334456
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 029243 153 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 153 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~E 185 (196)
++..+...+..+.-++.|++||++.|.+-+++-
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l 143 (150)
T 2rdp_A 111 EEVIEKRQRDLANVLESFSDEEIVVFERCLRKL 143 (150)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666677888889999999999988877653
No 25
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=65.17 E-value=8.8 Score=38.56 Aligned_cols=40 Identities=33% Similarity=0.526 Sum_probs=34.9
Q ss_pred ecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 145 SNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 145 ~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
+.-+-+|.++++.-|.+.|+++.++||+||++++.++-++
T Consensus 584 ~~P~~~~~~~~~~~e~~~L~~~~~~ls~~~~~~i~~~~~~ 623 (1193)
T 3s5m_A 584 LEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEE 623 (1193)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 3445689999999999999999999999999999998653
No 26
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=64.59 E-value=9.1 Score=29.34 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=29.7
Q ss_pred CCccHHHHHHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 029243 147 KEMTYAQQLRDYE---DKVMQKRLEGLTEAELEALIEQVEEEKR 187 (196)
Q Consensus 147 k~MTY~qQ~kdYE---~avLQKRleeLtpEEle~L~aEIE~Ek~ 187 (196)
+.|+.- ++++|. .+.++|-++.||.+|-.+.+.+|-++-+
T Consensus 43 ~~M~~k-~~k~F~~~~~~~~~kN~~kMS~ke~~~~r~aI~eal~ 85 (100)
T 2xrh_A 43 EKMPED-KRKAFHKQLHEYATKNTDKMTVADFEARQKAVKEALK 85 (100)
T ss_dssp HHSCHH-HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HhCCHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 356654 344554 5678899999999999999999987543
No 27
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=64.35 E-value=12 Score=26.20 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=56.1
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYA 152 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S---------YlfRV~tk~MTY~ 152 (196)
.++|++..+..++.... --|+. .--.-..+|++.....-...-+-=-| ||-- +.++.-.+--.+.
T Consensus 25 ~~~~lt~~q~~iL~~l~-~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G----lv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 25 GQQDLNYNLFAVLYTLA-TEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQG----LIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HTTTCCHHHHHHHHHHH-HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEeeccCCCCCceeeeeEChhHHHHH
Confidence 46777777655444332 12221 11224477887766555555555444 4431 1222333334455
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 153 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 153 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
++...-..+.++.-++.|+|+|++.+.+-+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 131 (145)
T 3g3z_A 100 APLTESAQEFSDKVFATFGDKRTTRLFADLDA 131 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 66666667788888999999999988776665
No 28
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=64.03 E-value=12 Score=25.90 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=57.9
Q ss_pred CCccccchhhhhhhHHHHHHHHHH-HHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYGL-KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYA 152 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~l-y~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SY---------lfRV~tk~MTY~ 152 (196)
.++|++..+...+....- -|..- --.-..+|++.....-...-+-=-|+ +--. .++.--+-..+.
T Consensus 27 ~~~~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~~gl----v~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 27 RDFGITPAQFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEADGY----LTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHTCCHHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTS----EEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCC----eeecCCCCCCceEEEEECHHHHHHH
Confidence 456777666544433322 12111 12244778877766666665555554 4322 233333334556
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 153 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 153 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
++..+...+.+++-++.|++||++.+.+-+++
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 133 (145)
T 2a61_A 102 EKVIERRENFIEKITSDLGKEKSSKILDYLKE 133 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666667788888999999999988877765
No 29
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=64.02 E-value=15 Score=25.16 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=57.2
Q ss_pred CCccccchhhhhhhHHHHHHHHHH-HHhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYGL-KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYA 152 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~l-y~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S---------YlfRV~tk~MTY~ 152 (196)
.++|++..+...+....-- |..- --.-..+|++.....-...-+-=-|+ +-. +.++.-.+-..+.
T Consensus 23 ~~~~l~~~~~~iL~~l~~~-~~~~~~ela~~l~~s~~tvs~~l~~L~~~gl----v~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 23 GHLNLTDAQVACLLRIHRE-PGIKQDELATFFHVDKGTIARTLRRLEESGF----IEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp GGGTCCHHHHHHHHHHHHS-TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTS----EEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HhcCCCHHHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC----EEeecCCCCceeEEeeECHhHHHHH
Confidence 4677777666554433221 2111 12244778876666555555555544 432 1222222334556
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 153 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 153 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
++.....++.++.-++.|++||++.+.+-+++
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 129 (138)
T 3bpv_A 98 PLILKVEERWEDLLFRDFTEDERKLFRKMCRR 129 (138)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666667788888899999999988877765
No 30
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=63.82 E-value=17 Score=24.99 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=56.2
Q ss_pred CccccchhhhhhhHHHHHHH--HH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccH
Q 029243 84 PFGYTRKDVLLIGVGVTVIG--YG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTY 151 (196)
Q Consensus 84 pfgMtR~DVI~IGlgvfllG--g~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SY---------lfRV~tk~MTY 151 (196)
++|++..+...+-...- -| .. .--.-..+|++.....-...-+-=-| |+-.. ....-.+-..+
T Consensus 29 ~~~lt~~~~~iL~~l~~-~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~G----li~r~~~~~d~R~~~i~lT~~G~~~ 103 (141)
T 3bro_A 29 KYDLTGTQMTIIDYLSR-NKNKEVLQRDLESEFSIKSSTATVLLQRMEIKK----LLYRKVSGKDSRQKCLKLTKKANKL 103 (141)
T ss_dssp TTTCCHHHHHHHHHHHH-TTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEECSSCTTSEEEEECHHHHTT
T ss_pred HcCCCHHHHHHHHHHHH-CCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCC----CEEeeCCCcCCCeeeeEECHHHHHH
Confidence 56666655443332221 12 11 22224477877665555555555444 44321 22333334456
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 152 AQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 152 ~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
.++..+..++..+.-++.++++|++.|.+-++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 136 (141)
T 3bro_A 104 ETIILSYMDSDQSQMTSGLNKEEVVFLEKILKR 136 (141)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677777778888888999999999988877665
No 31
>2q97_T Toxofilin, actin, alpha skeletal muscle; structural protein, structural protein-cell invasion complex; HET: HIC ATP; 2.50A {Toxoplasma gondii}
Probab=63.47 E-value=8.4 Score=30.60 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 029243 152 AQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKR 187 (196)
Q Consensus 152 ~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~ 187 (196)
..|-++||+ .|+-+.+||||....|.+.-..|+.
T Consensus 65 tdQQ~aYEq--vq~dl~~mSPEtKa~LIen~~kEk~ 98 (129)
T 2q97_T 65 TEQQKAYEQ--VQRDLSQLSPETKALLIENQRKEKT 98 (129)
T ss_dssp HHHHHHHHH--HHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH--HHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 468899986 5889999999999999877666554
No 32
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=61.92 E-value=5.4 Score=32.56 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=15.4
Q ss_pred CCCCccccchhhhh---hhHHHHHHH
Q 029243 81 TETPFGYTRKDVLL---IGVGVTVIG 103 (196)
Q Consensus 81 ~~~pfgMtR~DVI~---IGlgvfllG 103 (196)
++-|||+.|...+. .|+.++++|
T Consensus 62 ~~~pyG~~r~E~l~~l~~~~~l~~~~ 87 (283)
T 3h90_A 62 DNHSFGHGKAESLAALAQSMFISGSA 87 (283)
T ss_dssp SSCSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 56899999988654 444444444
No 33
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=61.30 E-value=19 Score=25.27 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=55.9
Q ss_pred CccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHHH
Q 029243 84 PFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYAQ 153 (196)
Q Consensus 84 pfgMtR~DVI~IGlgvfllGg~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SY---------lfRV~tk~MTY~q 153 (196)
++|++..+..++....- -|.. .--.-..+|++.....-...-+-=-|+ |-.. .++.-.+--.+..
T Consensus 32 ~~~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~~gl----v~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 32 KQGVTPAQLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQKNL----IARTHNTKDRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp HTTCCHHHHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTS----EEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC----EeecCCCCCCceEEEEECHHHHHHHH
Confidence 46676666544433221 1211 122244778877666655555555544 4321 2333333345566
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 154 QLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 154 Q~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
+........+++-++.|+++|++.|.+-++.
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 137 (155)
T 1s3j_A 107 EVLAGRKAIMARYLSFLTEEEMLQAAHITAK 137 (155)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666667788888999999999988877665
No 34
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=59.37 E-value=6.4 Score=30.04 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=49.0
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCc-cHHHHHHH-HHHHH
Q 029243 85 FGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEM-TYAQQLRD-YEDKV 162 (196)
Q Consensus 85 fgMtR~DVI~IGlgvfllGg~ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SYlfRV~tk~M-TY~qQ~kd-YE~av 162 (196)
.|=+-.|...+=..|.-.||. +.+ .....|.++.--+|+ .... +=..++|+ |+.-.
T Consensus 37 i~gk~lDL~~Ly~~V~~~GG~-----~~V----t~~k~W~~Va~~lg~-------------p~~~~sa~~~Lr~~Y~k~L 94 (121)
T 2rq5_A 37 IGGCELDLACFFRLINEMGGM-----QQV----TDLKKWNKLADMLRI-------------PKTAQDRLAKLQEAYCQYL 94 (121)
T ss_dssp ETTEECCHHHHHHHHHHTTSH-----HHH----HHTTCHHHHHHHTCC-------------CTTCSSHHHHHHHHHHTTH
T ss_pred CCCEeccHHHHHHHHHHcCcH-----HHh----cccCcHHHHHHHhCC-------------CCCcCcHHHHHHHHHHHHh
Confidence 455566766666666666622 221 122468887777765 1122 23345555 44322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 029243 163 MQKRLEGLTEAELEALIEQVEEEKRRL 189 (196)
Q Consensus 163 LQKRleeLtpEEle~L~aEIE~Ek~~~ 189 (196)
+ -+|.++|||.++|+.|++.|++..
T Consensus 95 ~--~YE~~~~~e~~~l~~~v~~~~~~~ 119 (121)
T 2rq5_A 95 L--SYDSLSPEEHRRLEKEVLMEKEIL 119 (121)
T ss_dssp H--HHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred H--HHHCcCHHHHhhHHHHHHHHHHHh
Confidence 2 356799999999999999998764
No 35
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=57.16 E-value=6.6 Score=32.83 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=17.8
Q ss_pred CCCCccccchhhhh---hhHHHHHHHH-HHHHhhH
Q 029243 81 TETPFGYTRKDVLL---IGVGVTVIGY-GLKSGLE 111 (196)
Q Consensus 81 ~~~pfgMtR~DVI~---IGlgvfllGg-~ly~gLq 111 (196)
++-|||+.|...+. .|+.++++|+ ++|.+.+
T Consensus 71 ~~~pyG~~R~E~l~al~~~~~l~~~~~~i~~eai~ 105 (306)
T 3j1z_P 71 HDHRYGHGKAEPLAALAQSAFIMGSAFLLLFYGGE 105 (306)
T ss_dssp CTTSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45899999987654 3444444332 3344444
No 36
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=56.52 E-value=21 Score=25.86 Aligned_cols=100 Identities=11% Similarity=0.079 Sum_probs=57.1
Q ss_pred CCccccchhhhhhhHHHHHHH--HH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeee------eeeeeecCCccHHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIG--YG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST------YIFRVSNKEMTYAQ 153 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllG--g~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S------YlfRV~tk~MTY~q 153 (196)
.++|++..+..++..+- -.| .. .--+-..+|++.....-.+.-+-=-|+ |-..-. +....-.+-..+.+
T Consensus 40 ~~~glt~~q~~vL~~l~-~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Gl-v~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 40 SQFELSAQQYNTLRLLR-SVHPEGMATLQIADRLISRAPDITRLIDRLDDRGL-VLRTRKPENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HTTTCCHHHHHHHHHHH-HHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTS-EEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHH-hcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCC-EeecCCCCCCCeeEeEECHHHHHHHH
Confidence 45677666654443222 111 11 122244678777666655555555554 222111 23334444456777
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 154 QLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 154 Q~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
+....-.+.++.-++.|++||++.|.+-+++
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~ 148 (168)
T 3u2r_A 118 DLEEPVRQCHERQLGHLAADELHELIRLMEL 148 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7777778888999999999999999888775
No 37
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=55.00 E-value=27 Score=26.28 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=48.6
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029243 110 LELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIE 180 (196)
Q Consensus 110 Lq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S---------YlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~a 180 (196)
-..+|++...+.-...-+-=-| ||-- +..+.--+-..+.++......+.++.-++.|++||++.|.+
T Consensus 64 a~~l~is~~tvs~~l~~Le~~G----lV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~ 139 (189)
T 3nqo_A 64 ARKMGTSKQNINRLVANLEKNG----YVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTGINFMADVFHEFTKDELETLWS 139 (189)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTT----SEEEEECSSCSSCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC----CEEeccCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4477887765555555554444 4432 34444444566777777777888899999999999998888
Q ss_pred HHHH
Q 029243 181 QVEE 184 (196)
Q Consensus 181 EIE~ 184 (196)
-++.
T Consensus 140 ~L~~ 143 (189)
T 3nqo_A 140 LLKK 143 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 38
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=54.13 E-value=29 Score=24.38 Aligned_cols=71 Identities=15% Similarity=0.292 Sum_probs=47.1
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029243 110 LELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIE 180 (196)
Q Consensus 110 Lq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S---------YlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~a 180 (196)
-..+|++...+.-...-+-=-|+ |-- +..+.--+-..+.++......+..+.-++.|++||++.+.+
T Consensus 61 a~~l~i~~~tvs~~l~~Le~~Gl----v~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~ 136 (150)
T 3fm5_A 61 AATMGLDPSQIVGLVDELEERGL----VVRTLDPSDRRNKLIAATEEGRRLRDDAKARVDAAHGRYFEGIPDTVVNQMRD 136 (150)
T ss_dssp HHHHTCCHHHHHHHHHHHHTTTS----EEC-----------CEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHCCCHhHHHHHHHHHHHCCC----EEeeCCccccchheeeECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44677776665555555544443 321 12233334455677777777888899999999999999988
Q ss_pred HHHH
Q 029243 181 QVEE 184 (196)
Q Consensus 181 EIE~ 184 (196)
-+++
T Consensus 137 ~L~~ 140 (150)
T 3fm5_A 137 TLQS 140 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 39
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=53.93 E-value=29 Score=24.48 Aligned_cols=77 Identities=8% Similarity=0.157 Sum_probs=51.1
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029243 110 LELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 183 (196)
Q Consensus 110 Lq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE 183 (196)
-..+|++.....-...-+.=-|+ |-... .+..++-.+-..+.++.....++.+++-++.|++||++.|.+-++
T Consensus 69 a~~l~i~~~tvs~~l~~Le~~Gl-i~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 147 (160)
T 3boq_A 69 SGALKVTNGNVSGLVNRLIKDGM-VVKAMSADDRRSFSAKLTDAGLTTFKQASEAHNRILAELLRAVSDQDMVEASAALR 147 (160)
T ss_dssp HHHCSSCCSCHHHHHHHHHHHTS-EEEC--------CEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHCCChhhHHHHHHHHHHCCC-EEeecCCCCCCeEEEEEChhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44788888877777777766665 22211 012233333355666677777888888999999999999988877
Q ss_pred HHHh
Q 029243 184 EEKR 187 (196)
Q Consensus 184 ~Ek~ 187 (196)
.-.+
T Consensus 148 ~l~~ 151 (160)
T 3boq_A 148 GILE 151 (160)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
No 40
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=50.20 E-value=38 Score=23.58 Aligned_cols=98 Identities=10% Similarity=0.032 Sum_probs=54.1
Q ss_pred ccccchhhhhhhHHHHHHHHHH-HHhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHHH
Q 029243 85 FGYTRKDVLLIGVGVTVIGYGL-KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLRD 157 (196)
Q Consensus 85 fgMtR~DVI~IGlgvfllGg~l-y~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~kd 157 (196)
+|++..+...+-..-- -|+.- --.-..+|++.....-...-+-=-|+ |-..- .+..+.-.+--.+.++..+
T Consensus 33 ~~lt~~~~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Gl-v~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 110 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEGRNL-VRRERNPSDQRSFQLFLTDEGLAIHLHAEL 110 (142)
T ss_dssp CCCCHHHHHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHHTTS-EEC----------CCEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCC-EeeccCCCCCCeeeeEECHHHHHHHHHHHH
Confidence 6777766544433321 12111 12244778887776666666655554 11111 0112222233445666677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 158 YEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 158 YE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
..++..+.-++.|++||++.|.+-+++
T Consensus 111 ~~~~~~~~~~~~l~~~e~~~l~~~l~~ 137 (142)
T 3ech_A 111 IMSRVHDELFAPLTPVEQATLVHLLDQ 137 (142)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 778888888999999999999887765
No 41
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=49.49 E-value=4 Score=27.98 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=19.1
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhhHHhCCCc
Q 029243 87 YTRKDVLLIGVGVTVIGYGLKSGLELFGVDP 117 (196)
Q Consensus 87 MtR~DVI~IGlgvfllGg~ly~gLq~~GlD~ 117 (196)
|| .||+.||-|. +|..+-+.|...|++-
T Consensus 1 Mt-~dV~IIGaGp--aGL~aA~~La~~G~~V 28 (336)
T 3kkj_A 1 MT-VPIAIIGTGI--AGLSAAQALTAAGHQV 28 (336)
T ss_dssp -C-CCEEEECCSH--HHHHHHHHHHHTTCCE
T ss_pred CC-CCEEEECcCH--HHHHHHHHHHHCCCCE
Confidence 44 6899999997 4444555577778753
No 42
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=48.84 E-value=24 Score=24.21 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=53.7
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYA 152 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SY---------lfRV~tk~MTY~ 152 (196)
.++|++..+...+.... --|.. .--.-..+|++.....-...-+.=-|+ +-.. .+..--+-..+.
T Consensus 28 ~~~~lt~~~~~iL~~l~-~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gl----i~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 28 SPLDITAAQFKVLCSIR-CAACITPVELKKVLSVDLGALTRMLDRLVCKGW----VERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp TTTTSCHHHHHHHHHHH-HHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTS----EEEEECTTCSSCEEEEECHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHH-hcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCC----EEecCCcccCceeEeEEChhHHHHH
Confidence 35677766654443322 11211 112235778877766666666555554 3321 122222223445
Q ss_pred HHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 029243 153 QQLRDYED-KVMQKRLEGLTEAELEALIEQVE 183 (196)
Q Consensus 153 qQ~kdYE~-avLQKRleeLtpEEle~L~aEIE 183 (196)
++..+.-+ +..+.-++.|+++|++.+.+-++
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 134 (138)
T 1jgs_A 103 EQCHQLVGQDLHQELTKNLTADEVATLEYLLK 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55555445 77778899999999999887654
No 43
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.63 E-value=38 Score=23.26 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=48.9
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029243 110 LELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 183 (196)
Q Consensus 110 Lq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE 183 (196)
-+.+|++...+.-...-+.=-|+ |--.- .+.+..-.+-..+..+.....++.+++-++.++++|++.|.+-++
T Consensus 59 a~~l~~s~~~vs~~l~~L~~~gl-v~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 137 (146)
T 2fbh_A 59 AQSVGVEGPTLARLLDGLESQGL-VRRLAVAEDRRAKHIVLTPKADVLIADIEAIAASVRNDVLTGIDESEQALCQQVLL 137 (146)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTS-EEEECCBTTBCSCEEEECTTHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHhCCChhhHHHHHHHHHHCCC-eeecCCCcccCeeeeEECHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45778877766666666655554 22111 112333344456677777777888888999999999998887776
Q ss_pred H
Q 029243 184 E 184 (196)
Q Consensus 184 ~ 184 (196)
+
T Consensus 138 ~ 138 (146)
T 2fbh_A 138 R 138 (146)
T ss_dssp H
T ss_pred H
Confidence 5
No 44
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=48.29 E-value=16 Score=25.27 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=20.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 029243 162 VMQKRLEGLTEAELEALIEQVEEEKRR 188 (196)
Q Consensus 162 vLQKRleeLtpEEle~L~aEIE~Ek~~ 188 (196)
.|-+++|..+ ++++...+++++||+.
T Consensus 21 ~L~~~lE~~~-~~Lee~t~~L~~EK~k 46 (66)
T 3hls_A 21 KLTQELEMLT-DRLQLTLRALEDEKKK 46 (66)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3777777766 7888999999988875
No 45
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=47.81 E-value=36 Score=23.19 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=44.6
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029243 110 LELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIE 180 (196)
Q Consensus 110 Lq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SY---------lfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~a 180 (196)
-..+|++.....-...-+-=-| |+-.. .++.-.+--.+.++..+.-++..++-++.++++|++.+.+
T Consensus 59 a~~l~~~~~tvs~~l~~L~~~g----lv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~ 134 (140)
T 2nnn_A 59 GRLTAMDAATIKGVVERLDKRG----LIQRSADPDDGRRLLVSLSPAGRAELEAGLAAAREINRQALAPLSLQEQETLRG 134 (140)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTT----CEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC----CEEeeCCCCCCCeeeeEECHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4467877665555555554444 44332 2333333345566666666788888999999999999887
Q ss_pred HHH
Q 029243 181 QVE 183 (196)
Q Consensus 181 EIE 183 (196)
-++
T Consensus 135 ~l~ 137 (140)
T 2nnn_A 135 LLA 137 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 46
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=46.92 E-value=52 Score=22.71 Aligned_cols=97 Identities=9% Similarity=-0.031 Sum_probs=53.1
Q ss_pred CccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHHH
Q 029243 84 PFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYAQ 153 (196)
Q Consensus 84 pfgMtR~DVI~IGlgvfllGg~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SY---------lfRV~tk~MTY~q 153 (196)
++|++..+..++-...---|.. .--.-..+|++.....-...-+-=-| ||--. .++.--+--.+.+
T Consensus 30 ~~~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~g----lv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (147)
T 2hr3_A 30 ADPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGG----LIVRHADPQDGRRTRVSLSSEGRRNLY 105 (147)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEEEC------CCEEEECHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCC----CEeeCCCCCCCCceeeEECHHHHHHHH
Confidence 5777766654433222101111 12223467776666555555555544 34221 1222222234455
Q ss_pred HHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 029243 154 QLRDYEDKVMQKRLE-GLTEAELEALIEQVEE 184 (196)
Q Consensus 154 Q~kdYE~avLQKRle-eLtpEEle~L~aEIE~ 184 (196)
+...-.++..++-++ .|+++|++.|.+-++.
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 137 (147)
T 2hr3_A 106 GNRAKREEWLVRAMHACLDESERALLAAAGPL 137 (147)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 555555778888898 9999999998885544
No 47
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=45.66 E-value=13 Score=24.97 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.8
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 029243 166 RLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 166 RleeLtpEEle~L~aEIE~E 185 (196)
+-|..+|||+++|..|+..-
T Consensus 13 kkegfspeelaaleselqal 32 (48)
T 1g6u_A 13 KKEGFSPEELAALESELQAL 32 (48)
T ss_dssp HHTTCSHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHH
Confidence 44789999999999998763
No 48
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=44.38 E-value=38 Score=22.75 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=38.0
Q ss_pred CCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 029243 114 GVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 114 GlD~~~AGiwsQ~lLVlGlvvgWv~SYlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~E 185 (196)
|--..+...+..+.=++|+-+.|+... + -+.+.+-..+..|+|++++++ +.++..
T Consensus 41 g~~~p~~~~l~~la~~l~v~~~~l~~~-------~---------~~~~~~~~~~~~l~~~~~~~~-~~l~~~ 95 (98)
T 3lfp_A 41 GKHAPDFEMANRLAKVLKIPVSYLYTP-------E---------DDLAQIILTWNELNEQERKRI-NFYIRK 95 (98)
T ss_dssp TSSCCCHHHHHHHHHHHTSCGGGGGCC-------C---------HHHHHHHHHHTTCCHHHHHHH-HHHHTT
T ss_pred CCCCCCHHHHHHHHHHHCcCHHHHhCC-------C---------hhHHHHHHHHHhCCHHHHHHH-HHHHHh
Confidence 444556666777777778877777543 1 123456688999999999999 776653
No 49
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=43.95 E-value=59 Score=22.99 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=46.0
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029243 110 LELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIE 180 (196)
Q Consensus 110 Lq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S---------YlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~a 180 (196)
-+.+|++.....-...-+-=-|+ |-- +.++.-.+--.+.++......+.+++-++.|++||++.|.+
T Consensus 73 a~~l~is~~tvs~~l~~Le~~Gl----i~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~ 148 (162)
T 3cjn_A 73 GIFAVVEQSTLSRALDGLQADGL----VRREVDSDDQRSSRVYLTPAGRAVYDRLWPHMRASHDRMFQGITPQERQAFLA 148 (162)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTS----EEEEEC--CCSSEEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHHCCC----EEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34667766555555555544443 332 12233333345666677777888888999999999999888
Q ss_pred HHHHHH
Q 029243 181 QVEEEK 186 (196)
Q Consensus 181 EIE~Ek 186 (196)
-+++-.
T Consensus 149 ~l~~l~ 154 (162)
T 3cjn_A 149 TLNKML 154 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776633
No 50
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=43.47 E-value=26 Score=25.28 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 161 KVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 161 avLQKRleeLtpEEle~L~aEIE~ 184 (196)
+.++.-++.||+||++.|.+-+++
T Consensus 98 ~~~~~~~~~ls~eE~~~L~~lL~~ 121 (138)
T 2g9w_A 98 AALVHFVERVGADEADALRRALAE 121 (138)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666889999999988877765
No 51
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=42.06 E-value=18 Score=27.23 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHhcc
Q 029243 167 LEGLTEAELEALIEQVEEEKRRL 189 (196)
Q Consensus 167 leeLtpEEle~L~aEIE~Ek~~~ 189 (196)
|++|++|+++++.+.|++-++..
T Consensus 79 ~~~L~~eDQ~~I~~~i~~~~~~~ 101 (117)
T 1uw0_A 79 WEELEDNEKEQITQHIADLSSKA 101 (117)
T ss_dssp TTTSCHHHHHHHHHHHHHHHCCS
T ss_pred hHHCCHHHHHHHHHHHHHhhccC
Confidence 68999999999999999865543
No 52
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=41.64 E-value=57 Score=21.79 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=41.8
Q ss_pred hC-CCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHh
Q 029243 113 FG-VDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRL-EGLTEAELEALIEQVEEEKR 187 (196)
Q Consensus 113 ~G-lD~~~AGiwsQ~lLVlGlvvgWv~SYlfRV~tk~MTY~qQ~kdYE~avLQKRl-eeLtpEEle~L~aEIE~Ek~ 187 (196)
-| -...+...+..+.-++|+-+.|+...- ..+.-.....+-....+...+ +.||++|++.+.+-++.-+.
T Consensus 36 ~g~~~~p~~~~l~~ia~~l~v~~~~l~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~l~~e~~~~i~~~i~~l~~ 107 (111)
T 1b0n_A 36 RNLQTNPSIQFLEKVSAVLDVSVHTLLDEK-----HETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQKWRKS 107 (111)
T ss_dssp TTCCSCCCHHHHHHHHHHHTCCHHHHHCCT-----TCC-----CCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHCcCHHHHhcCC-----CCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 35 445566667777777777777776432 111111111122244566778 99999999999988876443
No 53
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=40.82 E-value=14 Score=27.28 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=19.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccc
Q 029243 167 LEGLTEAELEALIEQVEEEKRRLA 190 (196)
Q Consensus 167 leeLtpEEle~L~aEIE~Ek~~~~ 190 (196)
|++|++|+++++.+-||+..-.+.
T Consensus 81 ~~~L~~eDq~~i~~~~e~g~~~p~ 104 (106)
T 2dmj_A 81 FSELRWDDQQKVKKTAEAGGSGPS 104 (106)
T ss_dssp TTTSCHHHHHHHHHHHHHCSSCCC
T ss_pred hHHCCHHHHHHHHHHHHhCCCCCC
Confidence 789999999999999987554443
No 54
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=39.47 E-value=47 Score=23.30 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=60.2
Q ss_pred CCccccchhhhhhhHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheeee-----------eeeeeecCCcc
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVST-----------YIFRVSNKEMT 150 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~ly-~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S-----------YlfRV~tk~MT 150 (196)
.++|+|..+...+... --|..-. -.-..+|++.....-...-+-=-|+ |.- +....-.+-..
T Consensus 32 ~~~~lt~~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Gl----v~r~~~~~~~D~R~~~~~lT~~G~~ 105 (151)
T 3kp7_A 32 TEYGISAEQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLNAEL----VKLEKPDSNTDQRLKIIKLSNKGKK 105 (151)
T ss_dssp HHHTCCHHHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTS----EEC-----------CCBEECHHHHH
T ss_pred hcCCCCHHHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC----EEeeCCCCCCCCCeeEEEECHhHHH
Confidence 4577777776655544 2222222 2245788888777766666665554 331 22223333344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 151 YAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 151 Y~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
+.++.....++.+++-++.+++||++.+.+-++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 139 (151)
T 3kp7_A 106 YIKERKAIMSHIASDMTSDFDSKEIEKVRQVLEI 139 (151)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5666666667888888999999999988877765
No 55
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=39.19 E-value=6.7 Score=30.79 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=16.6
Q ss_pred cccchhhhhhhHHHHHHHHHHHHhhHHhCCC
Q 029243 86 GYTRKDVLLIGVGVTVIGYGLKSGLELFGVD 116 (196)
Q Consensus 86 gMtR~DVI~IGlgvfllGg~ly~gLq~~GlD 116 (196)
||..-||+.||-|. +|..+-+.|...|++
T Consensus 1 ~Me~yDViIVGaGp--aGl~~A~~La~~G~~ 29 (397)
T 3oz2_A 1 GMETYDVLVVGGGP--GGSTAARYAAKYGLK 29 (397)
T ss_dssp CEEEEEEEEECCSH--HHHHHHHHHHHTTCC
T ss_pred CCCCCCEEEECcCH--HHHHHHHHHHHCCCc
Confidence 67777777777776 333333345555553
No 56
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=36.63 E-value=24 Score=25.62 Aligned_cols=36 Identities=11% Similarity=0.337 Sum_probs=29.6
Q ss_pred ccHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 149 MTYAQQLRDYE--------DKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 149 MTY~qQ~kdYE--------~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
=-|.++++.|. ...+.+-+++||+|..+.+..=++.
T Consensus 40 ~~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 40 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp SHHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67999999998 4567788999999999887665554
No 57
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=36.43 E-value=25 Score=28.59 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=26.0
Q ss_pred ecCCccHH-----HHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHH
Q 029243 145 SNKEMTYA-----QQLRDYEDKVMQKRLEGLTEA---ELEALIEQVEE 184 (196)
Q Consensus 145 ~tk~MTY~-----qQ~kdYE~avLQKRleeLtpE---Ele~L~aEIE~ 184 (196)
.+|||+|. ...++.|.+.+++.|..||++ |+..|-.|-|+
T Consensus 81 ~tGDi~~~~~~~~~~~~~~E~~A~~~l~~~LP~~~~~e~~~Lw~EyE~ 128 (200)
T 3kh1_A 81 DAGDTFIHDEAGNEDKEERERKAAARLFGLLPPDQAAEYSALWQEYEA 128 (200)
T ss_dssp HHCCCCTTCCC---CHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HhCCccccccccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHc
Confidence 45555553 234677888888888889864 55566666553
No 58
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=36.35 E-value=8.2 Score=30.55 Aligned_cols=25 Identities=8% Similarity=0.368 Sum_probs=16.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccc
Q 029243 166 RLEGLTEAELEALIEQVEEEKRRLA 190 (196)
Q Consensus 166 RleeLtpEEle~L~aEIE~Ek~~~~ 190 (196)
.++.|++||++.+++++++|+...+
T Consensus 186 g~~~l~~~ei~~~l~~~~~~~~~~~ 210 (219)
T 3h4p_a 186 GVKIFEDEEIEKILDSMKAKPKKKT 210 (219)
T ss_dssp EEEECCHHHHHHHHHHCC-------
T ss_pred CeEEcCHHHHHHHHHHhhccccccc
Confidence 3788999999999999988766544
No 59
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=36.20 E-value=8 Score=30.89 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=16.6
Q ss_pred cccchhhhhhhHHHHHHHHHHHHhhHHhCC
Q 029243 86 GYTRKDVLLIGVGVTVIGYGLKSGLELFGV 115 (196)
Q Consensus 86 gMtR~DVI~IGlgvfllGg~ly~gLq~~Gl 115 (196)
||.+.||+.||-|+. |..+-+.|...|+
T Consensus 1 gm~~~dVvIvG~G~a--Gl~~A~~La~~G~ 28 (397)
T 3cgv_A 1 GMETYDVLVVGGGPG--GSTAARYAAKYGL 28 (397)
T ss_dssp CEEEEEEEEECCSHH--HHHHHHHHHHTTC
T ss_pred CCccCCEEEECcCHH--HHHHHHHHHHCCC
Confidence 577778888887763 3333333444454
No 60
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=35.96 E-value=17 Score=35.54 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 029243 155 LRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRR 188 (196)
Q Consensus 155 ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~ 188 (196)
++.|.++.-.|.+++|++||++++++++.+|=+.
T Consensus 111 ~~~~a~~~~g~~~~~l~~~~~~~~~~~~~~elr~ 144 (800)
T 3ayf_A 111 QDYKAKERYNKPFADLTDDEKSIIREQVIKEMRK 144 (800)
T ss_dssp HHHHTC-------CCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhCcchhhcCHHHHHHHHHHHHHHHHh
Confidence 3444456667899999999999999999887654
No 61
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=35.54 E-value=21 Score=25.21 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=43.1
Q ss_pred HHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029243 111 ELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQ 181 (196)
Q Consensus 111 q~~GlD~~~AGiwsQ~lLVlGlvvgWv~S---------YlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aE 181 (196)
..+|++.....-...-+-=-| ||.- +.++.--+-..+.++.....++..++-++.|++||++.|.+-
T Consensus 65 ~~l~i~~~tvs~~l~~Le~~G----lv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~ 140 (155)
T 3cdh_A 65 KLSLMEQSRMTRIVDQMDARG----LVTRVADAKDKRRVRVRLTDDGRALAESLVASARAHETRLLSALADTDAARIKGV 140 (155)
T ss_dssp HHTTCCHHHHHHHHHHHHHTT----SEEECC------CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHTTTSGGGGHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHCC----CEEeccCCCcCCeeEeEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 456766655555555544444 3432 223333333455566666667788888999999998888777
Q ss_pred HHH
Q 029243 182 VEE 184 (196)
Q Consensus 182 IE~ 184 (196)
+++
T Consensus 141 l~~ 143 (155)
T 3cdh_A 141 LRT 143 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 62
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=35.35 E-value=31 Score=23.61 Aligned_cols=71 Identities=10% Similarity=0.115 Sum_probs=41.1
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHH-HHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 029243 110 LELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYA-QQLRDYEDKVMQKRLEGLTEAELEALI 179 (196)
Q Consensus 110 Lq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SY---------lfRV~tk~MTY~-qQ~kdYE~avLQKRleeLtpEEle~L~ 179 (196)
-..+|++.....-...-+-=-| |+-.. .++.-.+--.+. ++..+..++..+.-++.++++|++.|.
T Consensus 52 a~~l~is~~~vs~~l~~L~~~g----li~~~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~ 127 (142)
T 3bdd_A 52 QERLQIDRAAVTRHLKLLEESG----YIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQAIKTSMNQILTVEESEQFL 127 (142)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTT----SEEEEECSSSTTCEEEEECHHHHHHHTTSCCHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC----CEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3467776666555555555444 33321 122211222333 444445567777788999999999888
Q ss_pred HHHHH
Q 029243 180 EQVEE 184 (196)
Q Consensus 180 aEIE~ 184 (196)
+-+++
T Consensus 128 ~~l~~ 132 (142)
T 3bdd_A 128 ATLDK 132 (142)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 63
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=35.25 E-value=5.1 Score=29.55 Aligned_cols=30 Identities=7% Similarity=0.180 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 029243 152 AQQLRDYEDKVMQKRLEGLTEAELEALIEQV 182 (196)
Q Consensus 152 ~qQ~kdYE~avLQKRleeLtpEEle~L~aEI 182 (196)
.++.+......+++.++++. +++++|.++.
T Consensus 105 ~~~~~~~~~~~l~~~~~~l~-~~l~~le~~~ 134 (139)
T 3eff_K 105 VRHSEKAAEEAYTRTTRALH-ERFDRLERML 134 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34444444555666654443 3444444433
No 64
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=35.23 E-value=46 Score=23.26 Aligned_cols=71 Identities=25% Similarity=0.286 Sum_probs=44.4
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeee-----------eeeeeecCCccHHHHHHHH--HHHHHHHHHhcCCHHHHH
Q 029243 110 LELFGVDPLQAGNVVEVIVVLGLTLGWVST-----------YIFRVSNKEMTYAQQLRDY--EDKVMQKRLEGLTEAELE 176 (196)
Q Consensus 110 Lq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S-----------YlfRV~tk~MTY~qQ~kdY--E~avLQKRleeLtpEEle 176 (196)
-..+|++.....-...-+.=-| ||-. +.++.-.+-..+.++..+- -.+.++.-++.|++||++
T Consensus 62 a~~l~~~~~tvs~~l~~Le~~G----lv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~ 137 (154)
T 2qww_A 62 TKRLIITGSSAAANVDGLISLG----LVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANAFMYKAMMKVFENLTENEIE 137 (154)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTT----SEEESCC--CTTCTTCEEEECHHHHHHHHHHHSCHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC----CEEecCcCCCCCCceeEeEECHHHHHHHHHHHhhHHHHHHHHHHHhcCCHHHHH
Confidence 4467777655555444444444 4443 1233333334455555555 667788889999999999
Q ss_pred HHHHHHHH
Q 029243 177 ALIEQVEE 184 (196)
Q Consensus 177 ~L~aEIE~ 184 (196)
.|.+-++.
T Consensus 138 ~l~~~l~~ 145 (154)
T 2qww_A 138 ELIRLNKK 145 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887765
No 65
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=34.86 E-value=72 Score=27.28 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=16.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q 029243 165 KRLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 165 KRleeLtpEEle~L~aEIE~E 185 (196)
++...++++|++.+++++.+.
T Consensus 55 ~~~~~~s~~~l~~~~~~~~~a 75 (280)
T 3ukm_A 55 EEHECLSEQQLEQFLGRVLEA 75 (280)
T ss_dssp HHCTTCCHHHHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHH
Confidence 455679999999999987664
No 66
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=34.69 E-value=11 Score=28.80 Aligned_cols=25 Identities=8% Similarity=0.307 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Q 029243 160 DKVMQKRLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 160 ~avLQKRleeLtpEEle~L~aEIE~E 185 (196)
...+++++++|. +|+++|.++++++
T Consensus 140 ~~~l~~~i~~L~-~~l~~le~~~~~~ 164 (166)
T 3pjs_K 140 EEAYTRTTRALH-ERFDRLERMLDDN 164 (166)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence 344566665554 5556665555543
No 67
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=34.53 E-value=15 Score=28.62 Aligned_cols=21 Identities=48% Similarity=0.548 Sum_probs=18.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 029243 164 QKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 164 QKRleeLtpEEle~L~aEIE~ 184 (196)
.+|..+||+||+++|.++|++
T Consensus 42 ~~r~~~Lt~~ei~~l~~~i~~ 62 (126)
T 2vqe_M 42 ATRVKDLTEAEVVRLREYVEN 62 (126)
T ss_dssp TSBGGGCCHHHHHHHHHHHHT
T ss_pred ccccCcCCHHHHHHHHHHHHH
Confidence 468899999999999999974
No 68
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=34.40 E-value=24 Score=23.11 Aligned_cols=26 Identities=27% Similarity=0.586 Sum_probs=19.0
Q ss_pred HHHHHH-HHHHHHHHhcCCHHHHHHHH
Q 029243 154 QLRDYE-DKVMQKRLEGLTEAELEALI 179 (196)
Q Consensus 154 Q~kdYE-~avLQKRleeLtpEEle~L~ 179 (196)
|...|+ +..+.+|=.-||+|||.+++
T Consensus 6 ~~~~~~~~~ei~~RNrpltDEeLD~mL 32 (39)
T 3lqv_P 6 QLQAWRWEREIDERNRPLSDEELDAMF 32 (39)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHTC
T ss_pred HHHHHHhhccchhhcCCCCHHHHHHhC
Confidence 444444 55788888899999998874
No 69
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=33.73 E-value=28 Score=23.92 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=15.9
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 029243 166 RLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 166 RleeLtpEEle~L~aEIE~E 185 (196)
-+.+||+|||.+.+.|+.+|
T Consensus 5 elr~~s~~EL~~~l~elk~E 24 (66)
T 1r73_A 5 ELRNYTDEELKNLLEEKKRQ 24 (66)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 36788999998888888765
No 70
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=33.67 E-value=1.3e+02 Score=21.84 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=32.5
Q ss_pred cCCcc---HHHHHHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHHHhccccC
Q 029243 146 NKEMT---YAQQLRDYE-----DKVMQKRLEGLTEAELEALIEQVEEEKRRLASG 192 (196)
Q Consensus 146 tk~MT---Y~qQ~kdYE-----~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~~ 192 (196)
++.|| |--|.|+.. +.++++--..||++|++.+.+-.+--..+...|
T Consensus 3 ~~~Mtk~d~L~k~Rrc~s~eTLEkv~e~~~y~Lt~~el~~f~~AaDHR~AEL~~~ 57 (72)
T 1jw2_A 3 EKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMN 57 (72)
T ss_dssp STTCCHHHHHHHHHTSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred cccccHHHHHHHHHhcCcHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhC
Confidence 34576 444444443 788888889999999999988666554444444
No 71
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=32.62 E-value=34 Score=24.96 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 029243 157 DYEDKVMQKRLEGLTEAELEALIEQ 181 (196)
Q Consensus 157 dYE~avLQKRleeLtpEEle~L~aE 181 (196)
.|++--+..++++|+++|+-+++.+
T Consensus 66 ~~k~l~l~~~~~~ls~~~~~~lm~~ 90 (120)
T 3fz4_A 66 SYRALGLKDKLHQLSLDEAANLLAS 90 (120)
T ss_dssp HHHHTTHHHHGGGCCHHHHHHHHHH
T ss_pred chhhcCcccccccCCHHHHHHHHHh
Confidence 5666777888999999999888765
No 72
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=32.60 E-value=56 Score=22.82 Aligned_cols=62 Identities=6% Similarity=0.140 Sum_probs=40.6
Q ss_pred hCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 113 FGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 113 ~GlD~~~AGiwsQ~lLVlGlvvgWv~SYlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
-|--..+...+..+.-++|+.+.|+...- ..... .-....+...++.|++++++.+.+-++.
T Consensus 47 ~g~~~p~~~~l~~ia~~l~v~~~~l~~~~----~~~~~------~~~~~~l~~~~~~l~~~~~~~i~~~i~~ 108 (126)
T 3ivp_A 47 NKGQHPSLQVLYDLVSLLNVSVDEFFLPA----SSQVK------STKRRQLENKIDNFTDADLVIMESVADG 108 (126)
T ss_dssp HSCCCCCHHHHHHHHHHHTCCSHHHHSCC----CCCCC------CHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCcCHHHHhCCC----ccccc------hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35445666777777777777777766531 11111 1234567788999999999998877765
No 73
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=32.07 E-value=74 Score=26.04 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=38.2
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHH-----HH--hcCCHHHHHHHHHHH
Q 029243 110 LELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQK-----RL--EGLTEAELEALIEQV 182 (196)
Q Consensus 110 Lq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SYlfRV~tk~MTY~qQ~kdYE~avLQK-----Rl--eeLtpEEle~L~aEI 182 (196)
-..-|=-.+.+-=+..++=-+|. ..|+- .-...+.+|++.+-.| |+ ..||+||+.++|+|+
T Consensus 61 a~~~~RKTI~~eDVl~Al~~LgF-----~~fv~-------~lk~~L~~yre~~~~kkr~~~K~~~sg~~~Eel~~~Qqel 128 (179)
T 1jfi_B 61 CNKSEKKTISPEHVIQALESLGF-----GSYIS-------EVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQEL 128 (179)
T ss_dssp HHHTTCSSBCHHHHHHHHHHHTT-----GGGHH-------HHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHcCCCcCCHHHHHHHHHhcCh-----HHHHH-------HHHHHHHHHHHHHHhCccccchhhccCCCHHHHHHHHHHH
Confidence 34556677777777777666664 12221 2233444555444433 23 458999999999998
Q ss_pred HH
Q 029243 183 EE 184 (196)
Q Consensus 183 E~ 184 (196)
-+
T Consensus 129 f~ 130 (179)
T 1jfi_B 129 FA 130 (179)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 74
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=31.93 E-value=8.5 Score=31.55 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=18.4
Q ss_pred CCccccchhhhhhhHHHHHHHHHHHHhhHHhCCC
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVD 116 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~ly~gLq~~GlD 116 (196)
.|-.+++.||+.||-|+. |..+-+.|...|++
T Consensus 17 ~~~~~~~~dV~IVGaG~a--Gl~~A~~La~~G~~ 48 (407)
T 3rp8_A 17 NLYFQGHMKAIVIGAGIG--GLSAAVALKQSGID 48 (407)
T ss_dssp ------CCEEEEECCSHH--HHHHHHHHHHTTCE
T ss_pred cccCCCCCEEEEECCCHH--HHHHHHHHHhCCCC
Confidence 344445679999999984 44455556666764
No 75
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=31.75 E-value=13 Score=28.22 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=19.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhcc
Q 029243 166 RLEGLTEAELEALIEQVEEEKRRL 189 (196)
Q Consensus 166 RleeLtpEEle~L~aEIE~Ek~~~ 189 (196)
=|++|++|+++++.+.|++-...+
T Consensus 74 G~~~L~~eDQ~~I~~~i~~~~~~~ 97 (114)
T 1v9x_A 74 GIESLRWEDQQKIRKYVESGAGSN 97 (114)
T ss_dssp TTTTSCHHHHHHHHHHHSSCSSST
T ss_pred ChHHCCHHHHHHHHHHHHHcCCCC
Confidence 468999999999999998754443
No 76
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=31.63 E-value=52 Score=22.64 Aligned_cols=35 Identities=26% Similarity=0.534 Sum_probs=27.6
Q ss_pred cHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 150 TYAQQLRDYE--------DKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 150 TY~qQ~kdYE--------~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
.|.+|++.|. ...+.+-++.||+|.++-+..=++.
T Consensus 20 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 20 SYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4999999998 4567788999999998876655544
No 77
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=30.59 E-value=23 Score=27.08 Aligned_cols=20 Identities=10% Similarity=0.121 Sum_probs=18.1
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 029243 165 KRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 165 KRleeLtpEEle~L~aEIE~ 184 (196)
+-|++|.+|+++++.+.||+
T Consensus 92 ~Gfd~L~~eDQekIkk~ie~ 111 (116)
T 3od8_A 92 DGFSELRWDDQQKVKKTAEA 111 (116)
T ss_dssp ETGGGSCHHHHHHHHHHHHC
T ss_pred cChHHCCHHHHHHHHHHHHc
Confidence 67899999999999999975
No 78
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=30.17 E-value=13 Score=28.01 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=16.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHh
Q 029243 167 LEGLTEAELEALIEQVEEEKR 187 (196)
Q Consensus 167 leeLtpEEle~L~aEIE~Ek~ 187 (196)
|++|++|+++++.+.|++-+.
T Consensus 81 f~~L~~eDQe~Ikk~i~~~~~ 101 (111)
T 3odc_A 81 FSLLATEDKEALKKQLPGVKS 101 (111)
T ss_dssp GGGSCHHHHHHHHHHSCC---
T ss_pred hHHCCHHHHHHHHHHHHhhcc
Confidence 789999999999998876543
No 79
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.75 E-value=17 Score=29.06 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 029243 164 QKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 164 QKRleeLtpEEle~L~aEIE~ 184 (196)
.+|..+||+||+++|.+.|+.
T Consensus 53 ~~r~g~Lt~~ei~~l~~~i~~ 73 (152)
T 3iz6_M 53 NKRAGELSAEEMDRLMAVVHN 73 (152)
T ss_dssp SSBTTTSCHHHHHHHHHHHHS
T ss_pred CcEeCcCCHHHHHHHHHHHHh
Confidence 578899999999999999974
No 80
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.65 E-value=18 Score=28.79 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH
Q 029243 164 QKRLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 164 QKRleeLtpEEle~L~aEIE~E 185 (196)
.+|..+||+||+++|.+.|+..
T Consensus 48 ~~r~g~Lt~~ei~~i~~~i~~~ 69 (148)
T 3j20_O 48 FMKAGYLTDEQVKKIEEILADP 69 (148)
T ss_dssp SSCTTBCCHHHHHHHHHHHHCH
T ss_pred CceeccCCHHHHHHHHHHHhcc
Confidence 5788999999999999999753
No 81
>3ngm_A Extracellular lipase; secret lipase, hydrolase; 2.80A {Gibberella zeae}
Probab=29.35 E-value=32 Score=29.59 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=18.1
Q ss_pred HHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHhcccc
Q 029243 153 QQLRDYEDKVM--QKRLEGLTEAELEALIEQVEEEKRRLAS 191 (196)
Q Consensus 153 qQ~kdYE~avL--QKRleeLtpEEle~L~aEIE~Ek~~~~~ 191 (196)
.++|+|+.+.= -+.-++|+||||++-+.+.-++.++-..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T 3ngm_A 272 ISWRRYRSAKRESISERATMTDAELEKKLNSYVEMDKEYIK 312 (319)
T ss_dssp ------------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceecccccccccccccCCCcHHHHHHHHHHHHHHHHHHh
Confidence 45788884432 2234689999999988888776655433
No 82
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=29.04 E-value=19 Score=25.84 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=18.4
Q ss_pred eeecCCccHHHHHHHHHHHHHHHH
Q 029243 143 RVSNKEMTYAQQLRDYEDKVMQKR 166 (196)
Q Consensus 143 RV~tk~MTY~qQ~kdYE~avLQKR 166 (196)
|-+.-++.|++|+++||+...++|
T Consensus 126 R~i~pn~~f~~qL~~~e~~l~~~~ 149 (151)
T 2e0t_A 126 RGIIPNRGFLRQLLALDRRLRQGL 149 (151)
T ss_dssp SCSCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhc
Confidence 434678999999999998766554
No 83
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=28.80 E-value=99 Score=22.33 Aligned_cols=28 Identities=11% Similarity=0.305 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 029243 159 EDKVMQKRLEGLTEAELEALIEQVEEEK 186 (196)
Q Consensus 159 E~avLQKRleeLtpEEle~L~aEIE~Ek 186 (196)
+..+.+.....+++||+.+|.+|.+++-
T Consensus 99 ~~~~~~~~~~~~~~eel~~l~~~~~~~~ 126 (134)
T 4ham_A 99 KETILDLVYLGVNIEEIHKLADEYSQDI 126 (134)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455556666789999999998887753
No 84
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=28.72 E-value=78 Score=23.20 Aligned_cols=102 Identities=14% Similarity=0.021 Sum_probs=59.7
Q ss_pred CCccccchhhhhhhHHHHHHH----HHHHHhhHHhCCCcccchhHHHHHHHhhhhhheee-----eeeeeeecCCccHHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIG----YGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS-----TYIFRVSNKEMTYAQ 153 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllG----g~ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~-----SYlfRV~tk~MTY~q 153 (196)
.++|++..+..++-.+. --| .-.--+-..+|++.....-...-+-=-|++.--.. .+.++.--+-..+.+
T Consensus 63 ~~~glt~~~~~iL~~L~-~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 141 (181)
T 2fbk_A 63 AASGLNAAGWDLLLTLY-RSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 141 (181)
T ss_dssp HTTTCCHHHHHHHHHHH-HHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHH-HcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 45677766654443322 122 11223345788888887777777776665211100 112233333344555
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 029243 154 QLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 154 Q~kdYE~avLQKRleeLtpEEle~L~aEIE~E 185 (196)
+...--.+.+++-++.|++||++.|.+-+++-
T Consensus 142 ~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~l 173 (181)
T 2fbk_A 142 HLLPAHLATTQRVLAPLSAQEQRTLEELAGRM 173 (181)
T ss_dssp HHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 55555577788889999999999988877663
No 85
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=28.28 E-value=12 Score=27.92 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 029243 163 MQKRLEGLTEAELEALIEQ 181 (196)
Q Consensus 163 LQKRleeLtpEEle~L~aE 181 (196)
+.++.++++.||++.+.+-
T Consensus 115 ~~~~~~~l~~~~i~~l~~~ 133 (137)
T 4h33_A 115 LISETPDLTKEEIAVVEQF 133 (137)
T ss_dssp -------------------
T ss_pred HHHhhhhccHHHHHHHHHH
Confidence 3445566777776655443
No 86
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=28.13 E-value=62 Score=22.28 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=50.9
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeee------eeeeeecCCccHHHHH
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST------YIFRVSNKEMTYAQQL 155 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~S------YlfRV~tk~MTY~qQ~ 155 (196)
.++|++..+..++....- -|.. .--.-..+|++.....-...-+.=-|+ |--... +.+..-.+-..+.++.
T Consensus 31 ~~~~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gl-i~r~~~~~d~R~~~~~lT~~G~~~~~~~ 108 (142)
T 2bv6_A 31 KKYNLTYPQFLVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQVDL-IKRERSEVDQREVFIHLTDKSETIRPEL 108 (142)
T ss_dssp HHHTCCHHHHHHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTS-EEEEECSSSTTCEEEEECHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCC-EEeecCCCCcceEEEEEChHHHHHHHHH
Confidence 356676666544433221 1211 112244778877766666666555554 211111 1222222233344444
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 029243 156 RDYEDKVMQKRLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 156 kdYE~avLQKRleeLtpEEle~L~aEIE~E 185 (196)
....++ +.+.+ .|+++|++.|.+-+++-
T Consensus 109 ~~~~~~-~~~~~-~l~~~e~~~l~~~l~~~ 136 (142)
T 2bv6_A 109 SNASDK-VASAS-SLSQDEVKELNRLLGKV 136 (142)
T ss_dssp TTHHHH-HHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHh-CCCHHHHHHHHHHHHHH
Confidence 444344 34556 99999999998877653
No 87
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.02 E-value=71 Score=22.71 Aligned_cols=34 Identities=15% Similarity=0.364 Sum_probs=27.0
Q ss_pred cCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 029243 146 NKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 146 tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~E 185 (196)
.+.|||.+ ...|.+.+..|+++.+++...=|.+.
T Consensus 15 ~~~mT~eE------K~~Ls~~I~~Lp~e~L~~Vi~II~~~ 48 (90)
T 2jns_A 15 CKPMSYEE------KRQLSLDINKLPGEKLGRVVHIIQSR 48 (90)
T ss_dssp CCCCCHHH------HHHHHHHHTTSCHHHHTTHHHHHHTT
T ss_pred CCCCCHHH------HHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 36799875 45799999999999999877666553
No 88
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.88 E-value=40 Score=23.62 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=16.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHH
Q 029243 166 RLEGLTEAELEALIEQVEEEK 186 (196)
Q Consensus 166 RleeLtpEEle~L~aEIE~Ek 186 (196)
-+.+||+|||.+.+.|+.+|-
T Consensus 5 elr~~s~~EL~~~L~elk~EL 25 (72)
T 3j21_W 5 EIREMSIEEIDAKIRELRLQL 25 (72)
T ss_dssp HHHHSCHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHH
Confidence 467899999988888887653
No 89
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=27.82 E-value=80 Score=21.06 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 029243 160 DKVMQKRLEGLTEAELEALIEQVEEEKRR 188 (196)
Q Consensus 160 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 188 (196)
...|-++..+||++|.+.-.++-++++++
T Consensus 39 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~ 67 (82)
T 1wz6_A 39 TKILADWWAVLDPKEKQKYTDMAKEYKDA 67 (82)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 34677888999999999988887776654
No 90
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=27.55 E-value=84 Score=20.51 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 029243 160 DKVMQKRLEGLTEAELEALIEQVEEEKRR 188 (196)
Q Consensus 160 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 188 (196)
...|-++..+||++|.+.-.++-++++.+
T Consensus 36 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~ 64 (76)
T 1hry_A 36 SKQLGYQWKMLTEAEKWPFFQEAQKLQAM 64 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45677888999999999888777766543
No 91
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=27.19 E-value=52 Score=21.41 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=15.7
Q ss_pred hcCCHHHHHHHHHHHHHHHh
Q 029243 168 EGLTEAELEALIEQVEEEKR 187 (196)
Q Consensus 168 eeLtpEEle~L~aEIE~Ek~ 187 (196)
.|||++|+.+|..|--+.|-
T Consensus 2 sels~~ekaRlrRERR~aKi 21 (38)
T 3zs9_C 2 SELTEAEKRRLLRERRQKKF 21 (38)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHH
Confidence 48999999999999877664
No 92
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=27.12 E-value=42 Score=23.38 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=15.8
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 029243 166 RLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 166 RleeLtpEEle~L~aEIE~E 185 (196)
-|.+||++||.+.+.|+.+|
T Consensus 8 elr~~s~~EL~~~l~elk~E 27 (71)
T 1vq8_V 8 EIRDMTPAEREAELDDLKTE 27 (71)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 46788999988888877765
No 93
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=27.08 E-value=42 Score=21.42 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHHH
Q 029243 171 TEAELEALIEQVEEE 185 (196)
Q Consensus 171 tpEEle~L~aEIE~E 185 (196)
+|||+.+|.+|-...
T Consensus 13 tpeelkklkeeakka 27 (36)
T 2ki0_A 13 TPEELKKLKEEAKKA 27 (36)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 799999998876543
No 94
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=26.92 E-value=15 Score=30.69 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=19.4
Q ss_pred hhhhhhhHHHHHHHHHHHHhhHHhCCC
Q 029243 90 KDVLLIGVGVTVIGYGLKSGLELFGVD 116 (196)
Q Consensus 90 ~DVI~IGlgvfllGg~ly~gLq~~GlD 116 (196)
.||+.||-|+..|- ++|...++-|.+
T Consensus 11 ~DVvIIGaGisGLs-aA~~L~k~~G~~ 36 (513)
T 4gde_A 11 VDVLVIGAGPTGLG-AAKRLNQIDGPS 36 (513)
T ss_dssp EEEEEECCSHHHHH-HHHHHHHHCCSC
T ss_pred CCEEEECCcHHHHH-HHHHHHhhCCCC
Confidence 68999999998877 455555555765
No 95
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=26.86 E-value=31 Score=25.18 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 029243 157 DYEDKVMQKRLEGLTEAELEALIEQ 181 (196)
Q Consensus 157 dYE~avLQKRleeLtpEEle~L~aE 181 (196)
.|++--+..|+++|+++|+-+++.+
T Consensus 67 ~~k~l~l~~k~~~ls~~~~~~lm~~ 91 (120)
T 3gkx_A 67 VYKELKLSSKLPTMTEEEQIALLAT 91 (120)
T ss_dssp HHHHTTHHHHGGGSCHHHHHHHHTT
T ss_pred hhhhcCcchhcccCCHHHHHHHHHh
Confidence 5666677888999999999888754
No 96
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=26.82 E-value=90 Score=19.98 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 029243 160 DKVMQKRLEGLTEAELEALIEQVEEEKR 187 (196)
Q Consensus 160 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 187 (196)
...+-++..+||++|.+.-.+.-++++.
T Consensus 30 ~k~lg~~Wk~ls~~eK~~y~~~A~~~k~ 57 (67)
T 3fgh_A 30 LKTVKENWKNLSDSEKELYIQHAKEDET 57 (67)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 4567778899999999988877666554
No 97
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=26.69 E-value=35 Score=23.55 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=15.4
Q ss_pred HhcCCHHHHHHHHHHHHHH
Q 029243 167 LEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 167 leeLtpEEle~L~aEIE~E 185 (196)
|.+||+|||.+.+.|+..|
T Consensus 6 lr~~s~~EL~~~l~elk~E 24 (67)
T 2zjr_V 6 MRNLQATDFAKEIDARKKE 24 (67)
T ss_dssp TTTSCHHHHHHHHHTHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 5688999998888887765
No 98
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=26.67 E-value=79 Score=21.66 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.3
Q ss_pred hcCCHHHHHHHHHHHHHH
Q 029243 168 EGLTEAELEALIEQVEEE 185 (196)
Q Consensus 168 eeLtpEEle~L~aEIE~E 185 (196)
+.||+||++.|.+-+++-
T Consensus 106 ~~ls~ee~~~l~~~L~~~ 123 (126)
T 1sd4_A 106 EELNNKEIEELRDILNDI 123 (126)
T ss_dssp TCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 589999999999888653
No 99
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=26.42 E-value=34 Score=27.22 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=19.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccc
Q 029243 167 LEGLTEAELEALIEQVEEEKRRLA 190 (196)
Q Consensus 167 leeLtpEEle~L~aEIE~Ek~~~~ 190 (196)
+..++++|++.+.+++++++.+.+
T Consensus 202 ~~~l~~~ei~~~~~~~~~~~~~~~ 225 (235)
T 1q5q_H 202 AVHVSEETTSELARRIVAERTEQG 225 (235)
T ss_dssp EEECCHHHHHHHHHHHHHHHHTC-
T ss_pred eEEeCHHHHHHHHHHHHHHHhhCC
Confidence 567999999999999988766544
No 100
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=26.38 E-value=50 Score=23.25 Aligned_cols=35 Identities=11% Similarity=0.359 Sum_probs=27.5
Q ss_pred cHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 150 TYAQQLRDYE--------DKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 150 TY~qQ~kdYE--------~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
.|.++++.|. ...+.+-++.||+|.++-+..=++.
T Consensus 22 ~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 22 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4999999998 4567788999999998876655544
No 101
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.14 E-value=1.1e+02 Score=20.95 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 029243 160 DKVMQKRLEGLTEAELEALIEQVEEEK 186 (196)
Q Consensus 160 ~avLQKRleeLtpEEle~L~aEIE~Ek 186 (196)
...|-++..+||++|.+.-.++-++++
T Consensus 39 sk~lg~~Wk~ls~eeK~~y~~~A~~~k 65 (92)
T 2cs1_A 39 TLQIEELWKTLSEEEKLKYEEKATKDL 65 (92)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 345777889999999988877665543
No 102
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=26.01 E-value=17 Score=28.89 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 029243 164 QKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 164 QKRleeLtpEEle~L~aEIE~ 184 (196)
.+|..+||+||+++|.+.|+.
T Consensus 55 ~~r~g~Lt~~ei~~l~~~i~~ 75 (146)
T 3u5c_S 55 HKRAGELTQEELERIVQIMQN 75 (146)
T ss_dssp TSCSSSCCHHHHHHHHHHHTC
T ss_pred CceeccCCHHHHHHHHHHHHh
Confidence 678899999999999999964
No 103
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=25.73 E-value=91 Score=19.84 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 029243 160 DKVMQKRLEGLTEAELEALIEQVEEEKRR 188 (196)
Q Consensus 160 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 188 (196)
...+-++..+||++|.+.-.++-++++.+
T Consensus 34 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~ 62 (71)
T 4a3n_A 34 SKMLGKSWKALTLAEKRPFVEEAERLRVQ 62 (71)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34567788899999999988877766543
No 104
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.60 E-value=89 Score=21.15 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 029243 161 KVMQKRLEGLTEAELEALIEQVEEEKR 187 (196)
Q Consensus 161 avLQKRleeLtpEEle~L~aEIE~Ek~ 187 (196)
..|-++..+||++|.+.-.++-++++.
T Consensus 50 k~lg~~Wk~ls~~eK~~y~~~A~~~k~ 76 (86)
T 2eqz_A 50 KKCSERWKTMSGKEKSKFDEMAKADKV 76 (86)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 356677889999998887776666554
No 105
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=25.28 E-value=21 Score=27.22 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=17.0
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 029243 164 QKRLEGLTEAELEALIEQV 182 (196)
Q Consensus 164 QKRleeLtpEEle~L~aEI 182 (196)
.+|..+||+||+++|.+.|
T Consensus 41 ~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 41 DVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp TCCSTTCCHHHHHHHHHHH
T ss_pred ccCcccCCHHHHHHHHHHH
Confidence 4678999999999999988
No 106
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=25.25 E-value=22 Score=28.55 Aligned_cols=21 Identities=19% Similarity=0.291 Sum_probs=18.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 029243 164 QKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 164 QKRleeLtpEEle~L~aEIE~ 184 (196)
.+|..+||+||+++|.+.|+.
T Consensus 55 ~~r~~~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 55 NARAGLLTEDQCNKITDLIAD 75 (155)
T ss_dssp SSCSSCSCHHHHHHHHHHHHS
T ss_pred ccccccCCHHHHHHHHHHHhC
Confidence 458899999999999999975
No 107
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=25.21 E-value=56 Score=22.87 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=17.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHH
Q 029243 165 KRLEGLTEAELEALIEQVEEEK 186 (196)
Q Consensus 165 KRleeLtpEEle~L~aEIE~Ek 186 (196)
+-+.+||+|||.+.+.|+.+|-
T Consensus 11 ~elr~~s~eEL~~~L~elk~EL 32 (72)
T 3v2d_2 11 EEARKLSPVELEKLVREKKREL 32 (72)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHH
Confidence 4577899999988888887753
No 108
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=24.95 E-value=31 Score=27.45 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHhc
Q 029243 167 LEGLTEAELEALIEQVEEEKRR 188 (196)
Q Consensus 167 leeLtpEEle~L~aEIE~Ek~~ 188 (196)
+..++++|++.+.++++++++.
T Consensus 219 ~~~l~~~ei~~~~~~~~~~~~~ 240 (241)
T 1ryp_D 219 IVALSSEEINQYVTQIEQEKQE 240 (241)
T ss_dssp EEECCHHHHHHHHHHHTHHHHC
T ss_pred EEECCHHHHHHHHHHHhhhhcc
Confidence 7789999999999999877653
No 109
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=24.62 E-value=1.3e+02 Score=20.40 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=15.9
Q ss_pred HHHHH--hcCCHHHHHHHHHHHH
Q 029243 163 MQKRL--EGLTEAELEALIEQVE 183 (196)
Q Consensus 163 LQKRl--eeLtpEEle~L~aEIE 183 (196)
+..-+ +.||+||++.|.+-++
T Consensus 99 ~~~~~~~~~ls~ee~~~l~~~L~ 121 (123)
T 1okr_A 99 VLNFVEKEDLSQDEIEELRNILN 121 (123)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 33445 8999999999987653
No 110
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=24.61 E-value=30 Score=23.62 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=14.7
Q ss_pred HhcCCHHHHHHHHHHHHHH
Q 029243 167 LEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 167 leeLtpEEle~L~aEIE~E 185 (196)
+.+||+|||.+.+.|+.+|
T Consensus 6 lr~~s~~EL~~~l~elk~E 24 (63)
T 3r8s_Y 6 LREKSVEELNTELLNLLRE 24 (63)
T ss_dssp TTSCHHHHHHHHHHHHTHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 5678888888888777665
No 111
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=24.48 E-value=99 Score=20.40 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 029243 160 DKVMQKRLEGLTEAELEALIEQVEEEKR 187 (196)
Q Consensus 160 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 187 (196)
...|-++..+||+||.+.-.++-++++.
T Consensus 34 sk~lg~~Wk~ls~eeK~~y~~~A~~~k~ 61 (80)
T 1gt0_D 34 SKRLGAEWKLLSETEKRPFIDEAKRLRA 61 (80)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3467788899999999988877776554
No 112
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=24.25 E-value=15 Score=29.19 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=29.5
Q ss_pred eeeecCCccHHH-HHHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHH
Q 029243 142 FRVSNKEMTYAQ-QLRDYEDK---VMQKRLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 142 fRV~tk~MTY~q-Q~kdYE~a---vLQKRleeLtpEEle~L~aEIE~E 185 (196)
||..+..||=.+ |++.|++. ++. +-+++||+++|.+++++.
T Consensus 11 ~~~~~~~ls~~~~~~~~f~~dGyvvl~---~~l~~e~v~~l~~~~~~~ 55 (288)
T 2rdq_A 11 YTDCTPLLGDRAALDSFYEEHGYLFLR---NVLDRDLVKTVAEQMREG 55 (288)
T ss_dssp CCCCGGGTTCHHHHHHHHHHHSEEEEC---SCSCHHHHHHHHHHHHHH
T ss_pred cccCCcccCCHHHHHHHHHhCCEEEEe---CCCCHHHHHHHHHHHHHH
Confidence 456666776554 68888754 222 468999999999999974
No 113
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=23.84 E-value=39 Score=27.01 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=20.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhcc
Q 029243 166 RLEGLTEAELEALIEQVEEEKRRL 189 (196)
Q Consensus 166 RleeLtpEEle~L~aEIE~Ek~~~ 189 (196)
.+.-++|+|++.+.+++++++++.
T Consensus 220 ~~~~l~~~ei~~~~~~~~~~~~~~ 243 (246)
T 1j2p_A 220 TFKEVSPEELKPYVERANERIREL 243 (246)
T ss_dssp CCEECCHHHHHHHHHHHHHHHHHH
T ss_pred ceEECCHHHHHHHHHHHHHHHHHh
Confidence 377899999999999998877654
No 114
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=23.83 E-value=66 Score=23.15 Aligned_cols=93 Identities=16% Similarity=0.085 Sum_probs=53.2
Q ss_pred CCccccchhhhhhhHHHHHHHH-H-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecC-------------
Q 029243 83 TPFGYTRKDVLLIGVGVTVIGY-G-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNK------------- 147 (196)
Q Consensus 83 ~pfgMtR~DVI~IGlgvfllGg-~-ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SYlfRV~tk------------- 147 (196)
.|||+|-.+.-.+.+....=++ . .--.-..+|+|.....-.+.-+-=-|+ +-|.-+.
T Consensus 29 ~~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Gl--------v~r~~~~~DrR~~~l~LT~~ 100 (147)
T 4b8x_A 29 KPYGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGL--------VAKRPNPNDGRGTLATITDK 100 (147)
T ss_dssp GGGTCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTS--------EEEEECC----CEEEEECHH
T ss_pred HHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCC--------EEEeecCCcCceeEEEECHH
Confidence 5778776664433222111111 1 122345788888777666666655553 3333332
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243 148 EMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 184 (196)
Q Consensus 148 ~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 184 (196)
-....++.....++ +++.|+.|++||++.|.+=+++
T Consensus 101 G~~~~~~~~~~~~~-~~~~l~~l~~ee~~~l~~~L~~ 136 (147)
T 4b8x_A 101 GREVVEAATRDLMA-MDFGLGAYDAEECGEIFAMLRP 136 (147)
T ss_dssp HHHHHHHHHHHHHH-TGGGTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHH
Confidence 22344555544443 5778999999999988877765
No 115
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=23.44 E-value=30 Score=22.55 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=12.9
Q ss_pred cCCccHHHHHHHHH
Q 029243 146 NKEMTYAQQLRDYE 159 (196)
Q Consensus 146 tk~MTY~qQ~kdYE 159 (196)
.+.|.|.+|-+.|+
T Consensus 5 hG~MD~~~hE~Ty~ 18 (43)
T 1qle_D 5 HGEMDIRHQQATFA 18 (43)
T ss_dssp TTCSCCHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 47899999999998
No 116
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=23.38 E-value=1.1e+02 Score=20.54 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 029243 160 DKVMQKRLEGLTEAELEALIEQVEEEKR 187 (196)
Q Consensus 160 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 187 (196)
...|-++..+||+||.+.-.++-++++.
T Consensus 34 sk~lg~~Wk~ls~eeK~~y~~~A~~~k~ 61 (86)
T 2lef_A 34 NQILGRRWHALSREEQAKYYELARKERQ 61 (86)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3467778899999999988877776554
No 117
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=23.30 E-value=80 Score=22.66 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=18.5
Q ss_pred CCCCCCcccc----chhhhhhhHHHHHHHHHHH
Q 029243 79 DQTETPFGYT----RKDVLLIGVGVTVIGYGLK 107 (196)
Q Consensus 79 ~~~~~pfgMt----R~DVI~IGlgvfllGg~ly 107 (196)
.++.-||-|. |+.=|.++..+|++|.++.
T Consensus 4 ~~e~dpF~YDY~tLRigGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 4 VDKGSPFYYDWESLQLGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp TSTTSGGGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcccchHHheecchhhHHHHHHHHHHHH
Confidence 3455899983 5555666666677775543
No 118
>2qe9_A Uncharacterized protein YIZA; DINB/YFIT-like putative metalloenzymes fold, structural GENO joint center for structural genomics, JCSG; HET: CIT; 1.90A {Bacillus subtilis}
Probab=23.29 E-value=79 Score=23.40 Aligned_cols=27 Identities=19% Similarity=0.110 Sum_probs=20.8
Q ss_pred cHHHHHHHHH---HHHHHHHHhcCCHHHHH
Q 029243 150 TYAQQLRDYE---DKVMQKRLEGLTEAELE 176 (196)
Q Consensus 150 TY~qQ~kdYE---~avLQKRleeLtpEEle 176 (196)
++.+++-+|- ++.+.+.++.||+|++.
T Consensus 18 ~~~~~l~~y~~w~r~~l~~~l~~L~ee~l~ 47 (178)
T 2qe9_A 18 QGMMKFFEYNWQVRDQWFTWCHQLTTEELL 47 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHh
Confidence 4556666663 67889999999999875
No 119
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=23.06 E-value=93 Score=21.15 Aligned_cols=27 Identities=7% Similarity=0.120 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 029243 161 KVMQKRLEGLTEAELEALIEQVEEEKR 187 (196)
Q Consensus 161 avLQKRleeLtpEEle~L~aEIE~Ek~ 187 (196)
..|-++..+||+||.+.-.++-++++.
T Consensus 50 k~lg~~Wk~ls~eeK~~y~~~A~~~k~ 76 (87)
T 2e6o_A 50 VILGDRWKKMKNEERRMYTLEAKALAE 76 (87)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 457778889999999888877776554
No 120
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=22.38 E-value=17 Score=30.41 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=18.9
Q ss_pred cccchhhhhhhHHHHHHHHHHHHhhHHhC
Q 029243 86 GYTRKDVLLIGVGVTVIGYGLKSGLELFG 114 (196)
Q Consensus 86 gMtR~DVI~IGlgvfllGg~ly~gLq~~G 114 (196)
||.+.||+.||-|+..+. .-+-|...|
T Consensus 1 ~m~~~~v~IiGaG~~Gl~--~A~~L~~~g 27 (475)
T 3lov_A 1 GMSSKRLVIVGGGITGLA--AAYYAERAF 27 (475)
T ss_dssp CCCSCEEEEECCBHHHHH--HHHHHHHHC
T ss_pred CCCcccEEEECCCHHHHH--HHHHHHHhC
Confidence 688899999999986555 333344445
No 121
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.79 E-value=1.8e+02 Score=21.60 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=25.4
Q ss_pred eecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 029243 144 VSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEK 186 (196)
Q Consensus 144 V~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek 186 (196)
++|.+++..+.++.|+... ++++.| .++++.|+.|+++.+
T Consensus 77 ~~n~~~~~~~l~~~~~~e~--~~~~~L-~~~i~~Le~el~~~R 116 (117)
T 3kin_B 77 SVNLELTAEEWKKKYEKEK--EKNKAL-KSVIQHLEVELNRWR 116 (117)
T ss_dssp CCCBCCCHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHT
T ss_pred eecCcCCHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHhh
Confidence 5677888888888887542 233322 246666777776654
No 122
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=21.77 E-value=98 Score=21.23 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 029243 160 DKVMQKRLEGLTEAELEALIEQVEEEKRR 188 (196)
Q Consensus 160 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 188 (196)
...|-++..+||+||.+.-.++-++++.+
T Consensus 52 sk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~ 80 (90)
T 1wgf_A 52 TRLLARMWNDLSEKKKAKYKAREAALKAQ 80 (90)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34677788999999999998888877654
No 123
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=21.73 E-value=49 Score=26.21 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=18.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHh
Q 029243 167 LEGLTEAELEALIEQVEEEKR 187 (196)
Q Consensus 167 leeLtpEEle~L~aEIE~Ek~ 187 (196)
+.-++++|++.+.++++++++
T Consensus 220 ~~~~~~~ei~~~~~~~~~~~~ 240 (242)
T 1ryp_E 220 FKIYDNEKTAELIKELKEKEA 240 (242)
T ss_dssp EEECCHHHHHHHHHHHHHHHT
T ss_pred eEECCHHHHHHHHHHHhhhhc
Confidence 678999999999999987764
No 124
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=21.18 E-value=50 Score=23.42 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=16.5
Q ss_pred eecCCccHHHHHHHHHHHHH
Q 029243 144 VSNKEMTYAQQLRDYEDKVM 163 (196)
Q Consensus 144 V~tk~MTY~qQ~kdYE~avL 163 (196)
.+.-+.-|++|+++||+..+
T Consensus 124 ~~~pn~~f~~qL~~~e~~l~ 143 (144)
T 3ezz_A 124 IISPNFSFMGQLLQFESQVL 143 (144)
T ss_dssp TCCCCHHHHHHHHHHHHHHH
T ss_pred ccCCCHhHHHHHHHHHHHHh
Confidence 36778899999999997654
No 125
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.10 E-value=46 Score=24.46 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=16.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q 029243 165 KRLEGLTEAELEALIEQVEEE 185 (196)
Q Consensus 165 KRleeLtpEEle~L~aEIE~E 185 (196)
+-|.+||+|||.+.+.|+.+|
T Consensus 6 ~ELR~~S~eEL~~~L~eLK~E 26 (86)
T 3jyw_X 6 YELRTKSKEQLASQLVDLKKE 26 (86)
T ss_dssp HHHHTSCHHHHHHHHHHHTTT
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 347789999998888887655
No 126
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=20.87 E-value=1.2e+02 Score=23.66 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhc
Q 029243 157 DYEDKVMQKRLEG 169 (196)
Q Consensus 157 dYE~avLQKRlee 169 (196)
+|+++..++-+++
T Consensus 114 rYe~~e~~~~l~~ 126 (144)
T 2a9u_A 114 RYEEAEVRKKLEE 126 (144)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 127
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=20.87 E-value=1.2e+02 Score=19.72 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 029243 160 DKVMQKRLEGLTEAELEALIEQVEEEKR 187 (196)
Q Consensus 160 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 187 (196)
...|-++..+||++|.+.-.++-+++++
T Consensus 34 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 61 (79)
T 3u2b_C 34 SKRLGKRWKLLKDSDKIPFIQEAERLRL 61 (79)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4456777889999999988877766554
No 128
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=20.41 E-value=1.6e+02 Score=21.35 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=22.3
Q ss_pred HHHHHHHHH-----HHHHHHHhcCCHHHHHHHHHHH
Q 029243 152 AQQLRDYED-----KVMQKRLEGLTEAELEALIEQV 182 (196)
Q Consensus 152 ~qQ~kdYE~-----avLQKRleeLtpEEle~L~aEI 182 (196)
.+|+++|.+ ..|..--..||++|+++|.+=|
T Consensus 145 ~~~l~~~~~g~~~~~~Mp~~~~~Ls~~ei~~l~~yl 180 (183)
T 1h1o_A 145 IQQLTYFHNGTRVNTLMNQIAKNITVAQMKDVAAYL 180 (183)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcchHHHHHhCCHHHHHHHHHHH
Confidence 356777765 5676555679999999987654
No 129
>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3
Probab=20.37 E-value=15 Score=28.48 Aligned_cols=27 Identities=11% Similarity=0.324 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 029243 160 DKVMQKRLEGLTEAELEALIEQVEEEK 186 (196)
Q Consensus 160 ~avLQKRleeLtpEEle~L~aEIE~Ek 186 (196)
.+.++++++.|..+++++|++.+++.+
T Consensus 184 ~~~i~~~~~~~~~~~~~~l~~~~~~~~ 210 (212)
T 3eev_A 184 ESWLKESMQSLCSSDIEGLYLNWQSKA 210 (212)
T ss_dssp HHHHHHTHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhc
Confidence 678888888888778888888887654
No 130
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=20.06 E-value=1.2e+02 Score=21.44 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=7.9
Q ss_pred hcCCHHHHHHHHHH
Q 029243 168 EGLTEAELEALIEQ 181 (196)
Q Consensus 168 eeLtpEEle~L~aE 181 (196)
+.|+|++.++|.++
T Consensus 76 ~~~~~~~~~~~~~~ 89 (101)
T 1v63_A 76 KSLSPQDRAAYKEY 89 (101)
T ss_dssp HHSCTTHHHHHHHH
T ss_pred hhCCHHHHHHHHHH
Confidence 34566666655555
Done!