BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029244
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
pdb|1YZH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
Length = 214
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS 175
W +++ N P+ V++GSG G F+ A++NPD NY+G++I++ ++ A V E+ +
Sbjct: 34 WRDLFGNDN-PIHVEVGSGKGAFVSGXAKQNPDI-NYIGIDIQKSVLSYALDKVLEVGVP 91
Query: 176 NIALTLIS 183
NI L +
Sbjct: 92 NIKLLWVD 99
>pdb|2FCA|A Chain A, The Structure Of Bstrmb
pdb|2FCA|B Chain B, The Structure Of Bstrmb
Length = 213
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS 175
W+ V+ N P+ +++G+G G+F+ +A++NPD NY+G+E+ + ++ A V++
Sbjct: 31 WNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDI-NYIGIELFKSVIVTAVQKVKDSEAQ 88
Query: 176 NIALTLIS 183
N+ L I
Sbjct: 89 NVKLLNID 96
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187
++D+G+G+G +L +L++ + G +++++++V A V +L L N+ + L S +N
Sbjct: 41 VLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEV-LKSEENK 99
Query: 188 I 188
I
Sbjct: 100 I 100
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 33.1 bits (74), Expect = 0.11, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
+SS+T P P + W P +P I SGR L+W + RN G G
Sbjct: 148 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPG 199
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 33.1 bits (74), Expect = 0.11, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
+SS+T P P + W P +P I SGR L+W + RN G G
Sbjct: 148 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPG 199
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 33.1 bits (74), Expect = 0.11, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
+SS+T P P + W P +P I SGR L+W + RN G G
Sbjct: 165 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPG 216
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 32.7 bits (73), Expect = 0.12, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
+SS+T P P + W P +P I SGR L+W + RN G G
Sbjct: 148 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPG 199
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 32.7 bits (73), Expect = 0.12, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
+SS+T P P + W P +P I SGR L+W + RN G G
Sbjct: 148 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPG 199
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 32.7 bits (73), Expect = 0.12, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
+SS+T P P + W P +P I SGR L+W + RN G G
Sbjct: 148 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPG 199
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 32.7 bits (73), Expect = 0.14, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 104 SSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRN 146
+SS+T P P + W P +P I SGR L+W + RN
Sbjct: 170 ASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRN 213
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187
+++IG+ G IW AR P G L LE A+ ++A N+ L + ++
Sbjct: 67 ILEIGTLGGYSTIWXARELPADGQLLTLE--------ADAHHAQVARENLQLAGVDQRVT 118
Query: 188 IREGSC 193
+REG
Sbjct: 119 LREGPA 124
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 131 IGSGSGRFLIWLARRNPDS------GNYLGLEIRQKLVKRAEFW 168
+ S FLI + R+P++ GN + LE RQ KRA+ W
Sbjct: 99 LDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 131 IGSGSGRFLIWLARRNPDS------GNYLGLEIRQKLVKRAEFW 168
+ S FLI + R+P++ GN + LE RQ KRA+ W
Sbjct: 99 LDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142
>pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb
pdb|3DXY|A Chain A, Crystal Structure Of Ectrmb In Complex With Sam
pdb|3DXZ|A Chain A, Crystal Structure Of Ectrmb In Complex With Sah
Length = 218
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI 177
P+ ++IG G G L+ +A+ P+ ++LG+E+ V E LSN+
Sbjct: 36 PVTLEIGFGMGASLVAMAKDRPEQ-DFLGIEVHSPGVGACLASAHEEGLSNL 86
>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
From Methanopyrus Kandleri
Length = 506
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 66 IRSTDLVALEFAELN-LPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPT 124
+RS L ALE + + +P + EL R +PL++ AP+P EV K
Sbjct: 167 VRSATLDALEVHKKDPIPEVHPDPAELEEFRELADKDPLTTFARAIAPLPGAEEVGKMLA 226
Query: 125 LPLMVDIGSGSGRFLIWLA 143
L L +G S R + LA
Sbjct: 227 LQLFSCVGKNSERLHVLLA 245
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 131 IGSGSGRFLIWLARRNPDS------GNYLGLEIRQKLVKRAEFW 168
+ S FLI + R+P++ GN + LE RQ KRA+ W
Sbjct: 99 LDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142
>pdb|3M1G|A Chain A, The Structure Of A Putative Glutathione S-Transferase From
Corynebacterium Glutamicum
pdb|3M1G|B Chain B, The Structure Of A Putative Glutathione S-Transferase From
Corynebacterium Glutamicum
pdb|3M1G|C Chain C, The Structure Of A Putative Glutathione S-Transferase From
Corynebacterium Glutamicum
Length = 362
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 77 AELN----LPVSNKITG-ELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNP 123
AE+N +PV ++G H R + +P + T+P PIP EV KNP
Sbjct: 307 AEINPTRIVPVGPDLSGFATPHGREKLGGSPFAEGVTLPGPIPAGEEV-KNP 357
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 91 LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
+ R Q V P SSF A + D E + ++D G GSG LAR SG
Sbjct: 87 MNMKRRTQIVYPKDSSFI--AMMLDVKEGDR------IIDTGVGSGAMCAVLARAVGSSG 138
Query: 151 NYLGLEIRQKLVKRAE 166
E R++ K AE
Sbjct: 139 KVFAYEKREEFAKLAE 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,110,077
Number of Sequences: 62578
Number of extensions: 185804
Number of successful extensions: 432
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 27
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)