Query 029244
Match_columns 196
No_of_seqs 238 out of 1732
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:48:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2890 HemK Methylase of poly 99.6 1.2E-14 2.7E-19 127.5 9.1 113 70-186 58-171 (280)
2 PRK14966 unknown domain/N5-glu 99.5 2.5E-14 5.4E-19 132.0 10.1 111 70-186 200-311 (423)
3 KOG3115 Methyltransferase-like 99.5 5.4E-15 1.2E-19 125.3 4.6 96 92-188 20-130 (249)
4 TIGR03533 L3_gln_methyl protei 99.5 5.5E-14 1.2E-18 123.1 10.3 113 70-186 66-183 (284)
5 PRK01544 bifunctional N5-gluta 99.5 3.2E-14 7E-19 133.8 9.2 113 70-186 61-200 (506)
6 TIGR00536 hemK_fam HemK family 99.5 5.4E-14 1.2E-18 122.6 9.8 113 70-186 60-176 (284)
7 PRK11805 N5-glutamine S-adenos 99.5 1E-13 2.2E-18 122.9 10.0 112 70-186 78-195 (307)
8 TIGR03704 PrmC_rel_meth putati 99.5 2.2E-13 4.8E-18 117.4 9.0 111 70-187 32-145 (251)
9 TIGR00091 tRNA (guanine-N(7)-) 99.4 2.7E-13 5.9E-18 112.0 8.2 74 113-188 6-79 (194)
10 PF02390 Methyltransf_4: Putat 99.4 7.3E-13 1.6E-17 110.5 8.9 76 110-187 4-79 (195)
11 TIGR03534 RF_mod_PrmC protein- 99.4 4.2E-12 9.1E-17 106.5 10.6 112 70-186 35-148 (251)
12 PF12847 Methyltransf_18: Meth 99.4 3.4E-12 7.3E-17 94.5 8.8 59 125-184 2-61 (112)
13 PF13847 Methyltransf_31: Meth 99.4 2.9E-12 6.3E-17 101.1 8.6 64 124-188 3-67 (152)
14 PRK09328 N5-glutamine S-adenos 99.3 5E-12 1.1E-16 107.9 9.9 113 70-186 55-169 (275)
15 PF01209 Ubie_methyltran: ubiE 99.3 3.4E-12 7.3E-17 109.3 7.7 99 93-192 6-115 (233)
16 COG2226 UbiE Methylase involve 99.3 3.9E-12 8.5E-17 109.8 8.1 79 114-193 37-119 (238)
17 COG0220 Predicted S-adenosylme 99.3 4.5E-12 9.8E-17 108.6 8.1 75 113-188 37-111 (227)
18 PRK00121 trmB tRNA (guanine-N( 99.3 1.3E-11 2.9E-16 102.7 8.4 74 113-188 30-104 (202)
19 TIGR00138 gidB 16S rRNA methyl 99.2 3.9E-11 8.5E-16 98.8 8.6 64 124-188 42-105 (181)
20 KOG2904 Predicted methyltransf 99.2 3.7E-11 8E-16 105.9 8.6 109 70-182 92-206 (328)
21 PRK14121 tRNA (guanine-N(7)-)- 99.2 3.8E-11 8.2E-16 110.2 8.9 71 116-187 114-184 (390)
22 PRK00107 gidB 16S rRNA methylt 99.2 7.1E-11 1.5E-15 98.2 8.6 64 125-189 46-109 (187)
23 TIGR00080 pimt protein-L-isoas 99.2 1.3E-10 2.7E-15 97.2 9.5 65 124-188 77-141 (215)
24 PF13649 Methyltransf_25: Meth 99.2 3.5E-11 7.6E-16 88.7 5.4 62 128-191 1-65 (101)
25 PF05175 MTS: Methyltransferas 99.2 1.3E-10 2.8E-15 94.1 8.2 64 124-188 31-94 (170)
26 TIGR02469 CbiT precorrin-6Y C5 99.1 3.5E-10 7.6E-15 84.3 9.4 62 124-186 19-80 (124)
27 COG2263 Predicted RNA methylas 99.1 3.7E-10 8E-15 94.8 9.6 73 114-189 34-107 (198)
28 TIGR02752 MenG_heptapren 2-hep 99.1 4.2E-10 9E-15 94.0 9.0 66 124-190 45-111 (231)
29 PRK08287 cobalt-precorrin-6Y C 99.1 4.6E-10 9.9E-15 91.6 9.1 61 124-185 31-91 (187)
30 PRK15451 tRNA cmo(5)U34 methyl 99.1 3.2E-10 6.9E-15 96.9 8.4 67 124-191 56-125 (247)
31 PRK11207 tellurite resistance 99.1 5.7E-10 1.2E-14 92.5 9.5 71 116-189 22-92 (197)
32 PLN02672 methionine S-methyltr 99.1 2.5E-10 5.5E-15 115.5 8.5 103 85-188 76-197 (1082)
33 PRK07402 precorrin-6B methylas 99.1 4.4E-10 9.6E-15 92.4 8.4 62 124-186 40-101 (196)
34 PLN02233 ubiquinone biosynthes 99.1 6.5E-10 1.4E-14 96.1 8.6 67 124-191 73-143 (261)
35 PRK13944 protein-L-isoaspartat 99.0 1.2E-09 2.5E-14 91.1 9.4 65 124-188 72-137 (205)
36 TIGR00740 methyltransferase, p 99.0 9E-10 1.9E-14 93.1 8.5 67 124-191 53-122 (239)
37 COG2230 Cfa Cyclopropane fatty 99.0 8E-10 1.7E-14 97.6 8.2 69 123-194 71-140 (283)
38 PRK13942 protein-L-isoaspartat 99.0 2.1E-09 4.6E-14 90.2 10.0 65 124-188 76-140 (212)
39 PLN02244 tocopherol O-methyltr 99.0 2.2E-09 4.8E-14 96.2 9.0 65 124-190 118-183 (340)
40 TIGR02021 BchM-ChlM magnesium 98.9 2.6E-09 5.7E-14 89.0 8.0 62 124-188 55-117 (219)
41 COG2242 CobL Precorrin-6B meth 98.9 3.2E-09 7E-14 88.8 8.1 64 124-188 34-97 (187)
42 PRK14103 trans-aconitate 2-met 98.9 3.1E-09 6.7E-14 90.8 7.8 65 117-189 22-86 (255)
43 PRK01683 trans-aconitate 2-met 98.9 4.7E-09 1E-13 89.2 8.7 67 116-188 23-89 (258)
44 TIGR00477 tehB tellurite resis 98.9 6.6E-09 1.4E-13 86.0 9.2 60 125-188 31-90 (195)
45 PRK01544 bifunctional N5-gluta 98.9 2.5E-09 5.4E-14 100.9 7.5 72 114-187 338-409 (506)
46 TIGR02143 trmA_only tRNA (urac 98.9 3E-09 6.5E-14 96.1 7.5 73 113-188 186-258 (353)
47 PRK11036 putative S-adenosyl-L 98.9 3E-09 6.5E-14 91.0 7.1 62 124-188 44-106 (255)
48 PRK03522 rumB 23S rRNA methylu 98.9 2.5E-09 5.3E-14 94.7 6.7 61 125-188 174-234 (315)
49 PF08241 Methyltransf_11: Meth 98.9 1.6E-09 3.6E-14 76.6 4.5 60 129-193 1-60 (95)
50 PF05958 tRNA_U5-meth_tr: tRNA 98.9 1.6E-09 3.4E-14 97.9 5.2 72 113-187 185-256 (352)
51 PRK11873 arsM arsenite S-adeno 98.9 5.8E-09 1.3E-13 89.6 8.4 65 124-189 77-142 (272)
52 COG2813 RsmC 16S RNA G1207 met 98.9 1.1E-08 2.4E-13 91.1 10.0 98 96-194 129-227 (300)
53 PF13659 Methyltransf_26: Meth 98.9 3.6E-09 7.9E-14 78.9 5.9 61 126-188 2-63 (117)
54 PRK00377 cbiT cobalt-precorrin 98.9 6.5E-09 1.4E-13 85.9 8.0 63 124-187 40-104 (198)
55 PRK15001 SAM-dependent 23S rib 98.9 9E-09 2E-13 94.2 9.3 61 125-186 229-292 (378)
56 COG4123 Predicted O-methyltran 98.9 5E-09 1.1E-13 91.1 7.0 65 124-189 44-109 (248)
57 smart00828 PKS_MT Methyltransf 98.9 1.1E-08 2.4E-13 84.9 8.6 61 127-188 2-63 (224)
58 PRK05031 tRNA (uracil-5-)-meth 98.9 5.1E-09 1.1E-13 94.8 7.1 72 113-187 195-266 (362)
59 PLN02336 phosphoethanolamine N 98.9 4.3E-09 9.3E-14 97.3 6.7 63 124-189 266-328 (475)
60 COG4106 Tam Trans-aconitate me 98.8 5.8E-09 1.2E-13 89.6 6.7 71 114-190 20-90 (257)
61 PLN02396 hexaprenyldihydroxybe 98.8 7E-09 1.5E-13 93.0 7.5 63 125-190 132-195 (322)
62 PF02353 CMAS: Mycolic acid cy 98.8 6.2E-09 1.3E-13 91.2 6.7 64 124-189 62-126 (273)
63 TIGR00537 hemK_rel_arch HemK-r 98.8 1.2E-08 2.7E-13 82.6 7.9 62 124-189 19-80 (179)
64 PRK13168 rumA 23S rRNA m(5)U19 98.8 8.1E-09 1.8E-13 95.5 7.7 61 124-187 297-357 (443)
65 PRK12335 tellurite resistance 98.8 2E-08 4.3E-13 87.7 9.7 59 125-187 121-179 (287)
66 PRK07580 Mg-protoporphyrin IX 98.8 1.7E-08 3.6E-13 83.8 8.8 60 123-185 62-122 (230)
67 PRK00312 pcm protein-L-isoaspa 98.8 2.4E-08 5.1E-13 83.0 9.6 60 124-186 78-137 (212)
68 PRK13943 protein-L-isoaspartat 98.8 1.6E-08 3.4E-13 90.8 9.0 65 124-188 80-144 (322)
69 TIGR03587 Pse_Me-ase pseudamin 98.8 1.4E-08 3E-13 85.2 7.6 57 124-186 43-99 (204)
70 COG2265 TrmA SAM-dependent met 98.8 5.6E-09 1.2E-13 97.1 5.7 74 113-189 281-355 (432)
71 PF01135 PCMT: Protein-L-isoas 98.8 6.6E-09 1.4E-13 87.9 5.6 64 124-187 72-135 (209)
72 PRK09489 rsmC 16S ribosomal RN 98.8 3.2E-08 6.9E-13 89.3 10.3 60 125-186 197-256 (342)
73 COG2518 Pcm Protein-L-isoaspar 98.8 3.1E-08 6.8E-13 84.2 9.4 70 114-186 62-131 (209)
74 PRK00274 ksgA 16S ribosomal RN 98.8 1.1E-08 2.5E-13 88.9 6.9 62 124-191 42-103 (272)
75 PRK11088 rrmA 23S rRNA methylt 98.8 2E-08 4.3E-13 86.9 8.3 62 124-190 85-148 (272)
76 smart00650 rADc Ribosomal RNA 98.8 2.3E-08 5E-13 80.6 8.0 63 124-191 13-75 (169)
77 PRK14967 putative methyltransf 98.8 3E-08 6.5E-13 83.3 8.8 61 124-187 36-96 (223)
78 COG2227 UbiG 2-polyprenyl-3-me 98.8 5E-09 1.1E-13 90.7 3.9 63 124-190 59-121 (243)
79 PLN02585 magnesium protoporphy 98.8 2.7E-08 5.8E-13 89.0 8.6 61 124-187 144-209 (315)
80 TIGR00479 rumA 23S rRNA (uraci 98.8 1.8E-08 4E-13 92.5 7.4 61 124-187 292-352 (431)
81 PRK05785 hypothetical protein; 98.7 1.7E-08 3.7E-13 85.7 6.4 57 125-191 52-108 (226)
82 PRK14968 putative methyltransf 98.7 6.3E-08 1.4E-12 77.5 8.8 61 124-187 23-85 (188)
83 TIGR02085 meth_trns_rumB 23S r 98.7 2.4E-08 5.2E-13 90.7 6.9 61 125-188 234-294 (374)
84 PF08242 Methyltransf_12: Meth 98.7 1.1E-09 2.4E-14 80.0 -1.5 57 129-186 1-57 (99)
85 TIGR02072 BioC biotin biosynth 98.7 4.1E-08 8.9E-13 80.8 7.6 60 125-189 35-94 (240)
86 PRK14896 ksgA 16S ribosomal RN 98.7 3.5E-08 7.6E-13 85.1 7.4 63 124-191 29-91 (258)
87 TIGR02716 C20_methyl_CrtF C-20 98.7 4.6E-08 1E-12 85.7 8.2 62 124-187 149-211 (306)
88 PRK00216 ubiE ubiquinone/menaq 98.7 5.4E-08 1.2E-12 80.4 8.2 65 124-189 51-117 (239)
89 PRK06202 hypothetical protein; 98.7 2.7E-08 5.7E-13 83.8 6.3 62 124-189 60-125 (232)
90 PRK08317 hypothetical protein; 98.7 9.4E-08 2E-12 78.4 9.3 64 124-189 19-83 (241)
91 PRK04266 fibrillarin; Provisio 98.7 5.4E-08 1.2E-12 83.1 8.0 60 124-186 72-131 (226)
92 PLN02490 MPBQ/MSBQ methyltrans 98.7 4.9E-08 1.1E-12 88.3 8.0 63 124-190 113-175 (340)
93 TIGR00406 prmA ribosomal prote 98.7 6.5E-08 1.4E-12 84.8 8.6 61 124-186 159-220 (288)
94 PTZ00338 dimethyladenosine tra 98.7 5.5E-08 1.2E-12 86.2 8.0 65 124-191 36-101 (294)
95 TIGR01177 conserved hypothetic 98.7 5.1E-08 1.1E-12 86.8 7.8 63 124-189 182-244 (329)
96 PRK10909 rsmD 16S rRNA m(2)G96 98.7 5.1E-08 1.1E-12 81.9 7.4 62 124-187 53-114 (199)
97 KOG1540 Ubiquinone biosynthesi 98.7 7.5E-08 1.6E-12 84.5 8.6 78 115-192 87-176 (296)
98 TIGR00446 nop2p NOL1/NOP2/sun 98.7 5.7E-08 1.2E-12 84.2 7.7 65 124-188 71-135 (264)
99 PF03848 TehB: Tellurite resis 98.7 1E-07 2.2E-12 80.1 8.8 62 124-189 30-91 (192)
100 PF06325 PrmA: Ribosomal prote 98.7 4.6E-08 9.9E-13 86.9 6.8 59 115-176 153-211 (295)
101 PRK14904 16S rRNA methyltransf 98.7 8.2E-08 1.8E-12 88.9 8.7 65 124-188 250-314 (445)
102 PRK14901 16S rRNA methyltransf 98.7 6.6E-08 1.4E-12 89.3 7.9 65 124-188 252-316 (434)
103 PRK00517 prmA ribosomal protei 98.7 6.4E-08 1.4E-12 82.9 7.2 58 124-183 119-177 (250)
104 PRK14903 16S rRNA methyltransf 98.7 7.1E-08 1.5E-12 89.4 8.0 65 124-188 237-301 (431)
105 PRK15068 tRNA mo(5)U34 methylt 98.7 1E-07 2.3E-12 85.1 8.8 65 123-189 121-186 (322)
106 PRK10258 biotin biosynthesis p 98.7 7.4E-08 1.6E-12 81.7 7.5 59 124-190 42-100 (251)
107 PRK06922 hypothetical protein; 98.7 6.3E-08 1.4E-12 94.0 7.8 63 124-188 418-480 (677)
108 PTZ00098 phosphoethanolamine N 98.7 8.9E-08 1.9E-12 82.9 8.1 67 119-189 47-113 (263)
109 PRK14902 16S rRNA methyltransf 98.6 9.3E-08 2E-12 88.4 8.5 64 124-188 250-314 (444)
110 COG2264 PrmA Ribosomal protein 98.6 7.2E-08 1.6E-12 86.0 7.2 60 114-176 153-212 (300)
111 TIGR03840 TMPT_Se_Te thiopurin 98.6 1.4E-07 3.1E-12 79.7 8.5 73 114-189 24-108 (213)
112 PLN02781 Probable caffeoyl-CoA 98.6 1.3E-07 2.7E-12 80.9 8.0 63 125-187 69-132 (234)
113 KOG1271 Methyltransferases [Ge 98.6 6.3E-08 1.4E-12 81.6 5.9 61 125-186 68-129 (227)
114 KOG3420 Predicted RNA methylas 98.6 2.7E-08 5.8E-13 81.2 3.5 70 119-191 43-112 (185)
115 TIGR01444 fkbM_fam methyltrans 98.6 1.8E-07 3.9E-12 72.3 7.7 59 127-186 1-59 (143)
116 TIGR00755 ksgA dimethyladenosi 98.6 1.2E-07 2.6E-12 81.3 7.2 62 124-190 29-90 (253)
117 TIGR03438 probable methyltrans 98.6 1.5E-07 3.2E-12 83.1 7.8 62 124-186 63-126 (301)
118 KOG2187 tRNA uracil-5-methyltr 98.6 3.6E-08 7.7E-13 93.0 3.5 63 124-189 383-445 (534)
119 cd02440 AdoMet_MTases S-adenos 98.6 2.3E-07 4.9E-12 64.4 6.7 60 127-188 1-60 (107)
120 PLN03075 nicotianamine synthas 98.6 2.6E-07 5.7E-12 82.3 8.4 65 124-189 123-191 (296)
121 PRK10901 16S rRNA methyltransf 98.5 2.7E-07 5.9E-12 85.0 8.5 63 124-188 244-306 (427)
122 TIGR01983 UbiG ubiquinone bios 98.5 2.7E-07 5.8E-12 76.4 7.6 62 125-189 46-107 (224)
123 PRK04457 spermidine synthase; 98.5 1.4E-07 3E-12 82.0 6.1 63 124-187 66-129 (262)
124 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 3.3E-07 7E-12 75.0 7.5 64 124-189 39-102 (223)
125 PRK13255 thiopurine S-methyltr 98.5 4.5E-07 9.9E-12 76.9 8.6 64 124-190 37-112 (218)
126 TIGR00095 RNA methyltransferas 98.5 3.7E-07 8E-12 75.8 7.6 61 124-186 49-110 (189)
127 PHA03411 putative methyltransf 98.5 3.1E-07 6.8E-12 81.1 7.4 59 125-189 65-123 (279)
128 PF01596 Methyltransf_3: O-met 98.5 2.7E-07 5.9E-12 77.9 6.3 63 125-187 46-109 (205)
129 PRK11727 23S rRNA mA1618 methy 98.5 4.9E-07 1.1E-11 81.3 8.2 57 124-181 114-172 (321)
130 PRK15128 23S rRNA m(5)C1962 me 98.5 3.4E-07 7.4E-12 84.2 7.3 63 124-188 220-284 (396)
131 TIGR00452 methyltransferase, p 98.5 8.2E-07 1.8E-11 79.5 8.9 65 123-189 120-185 (314)
132 PRK11705 cyclopropane fatty ac 98.4 6.2E-07 1.3E-11 82.0 7.8 59 124-187 167-225 (383)
133 PLN02476 O-methyltransferase 98.4 6.4E-07 1.4E-11 79.1 7.2 64 125-188 119-183 (278)
134 PF09445 Methyltransf_15: RNA 98.4 3.8E-07 8.2E-12 74.9 4.9 60 127-189 2-62 (163)
135 PF01170 UPF0020: Putative RNA 98.4 1.2E-06 2.7E-11 72.0 7.7 65 124-189 28-102 (179)
136 PRK11783 rlmL 23S rRNA m(2)G24 98.4 7.5E-07 1.6E-11 87.1 7.3 61 125-187 539-601 (702)
137 PF02475 Met_10: Met-10+ like- 98.4 9.7E-07 2.1E-11 74.5 6.9 65 124-189 101-166 (200)
138 KOG1270 Methyltransferases [Co 98.4 3.2E-07 6.9E-12 80.6 4.1 60 126-188 91-156 (282)
139 PHA03412 putative methyltransf 98.4 9.1E-07 2E-11 76.8 6.8 59 124-188 49-110 (241)
140 PRK00050 16S rRNA m(4)C1402 me 98.4 1.1E-06 2.5E-11 78.1 7.5 76 110-188 5-81 (296)
141 TIGR00563 rsmB ribosomal RNA s 98.4 1.4E-06 3E-11 80.4 8.0 63 124-187 238-301 (426)
142 PLN02336 phosphoethanolamine N 98.3 1.7E-06 3.6E-11 80.1 8.4 57 124-185 37-93 (475)
143 PRK04338 N(2),N(2)-dimethylgua 98.3 1.1E-06 2.5E-11 80.5 6.6 62 126-188 59-120 (382)
144 smart00138 MeTrc Methyltransfe 98.3 1.1E-06 2.4E-11 76.4 6.1 64 125-189 100-199 (264)
145 COG2519 GCD14 tRNA(1-methylade 98.3 4.2E-06 9E-11 73.1 9.6 67 123-190 93-161 (256)
146 PF05401 NodS: Nodulation prot 98.3 8.8E-07 1.9E-11 74.9 5.2 65 121-190 40-104 (201)
147 TIGR02081 metW methionine bios 98.3 1.6E-06 3.4E-11 71.2 6.6 54 124-186 13-66 (194)
148 PF07021 MetW: Methionine bios 98.3 1.3E-06 2.7E-11 73.6 5.8 54 124-186 13-66 (193)
149 PRK05134 bifunctional 3-demeth 98.3 2.1E-06 4.6E-11 71.8 7.2 61 124-188 48-108 (233)
150 PRK11188 rrmJ 23S rRNA methylt 98.3 1.5E-06 3.3E-11 73.0 5.9 53 124-187 51-103 (209)
151 TIGR00438 rrmJ cell division p 98.2 2E-06 4.3E-11 70.3 5.5 51 124-186 32-83 (188)
152 PF13679 Methyltransf_32: Meth 98.2 2.5E-06 5.3E-11 67.3 5.8 61 124-186 25-93 (141)
153 COG4122 Predicted O-methyltran 98.2 5.1E-06 1.1E-10 71.2 7.8 64 124-188 59-125 (219)
154 KOG1499 Protein arginine N-met 98.2 3.7E-06 8E-11 76.2 7.1 62 125-189 61-123 (346)
155 PTZ00146 fibrillarin; Provisio 98.2 5.7E-06 1.2E-10 73.7 7.7 61 124-186 132-192 (293)
156 PLN02589 caffeoyl-CoA O-methyl 98.2 4.7E-06 1E-10 72.4 7.1 64 125-188 80-144 (247)
157 PRK04148 hypothetical protein; 98.2 6E-06 1.3E-10 65.9 7.1 59 120-188 12-71 (134)
158 COG0030 KsgA Dimethyladenosine 98.1 5.2E-06 1.1E-10 72.8 6.7 62 125-191 31-92 (259)
159 PF08704 GCD14: tRNA methyltra 98.1 8.4E-06 1.8E-10 70.9 7.7 61 124-185 40-102 (247)
160 PRK00811 spermidine synthase; 98.1 8.7E-06 1.9E-10 71.4 7.9 64 124-188 76-144 (283)
161 PF13489 Methyltransf_23: Meth 98.1 4.5E-06 9.8E-11 64.6 5.1 39 123-164 21-59 (161)
162 PRK13256 thiopurine S-methyltr 98.1 1.9E-05 4E-10 67.9 8.7 78 109-189 27-117 (226)
163 KOG3010 Methyltransferase [Gen 98.1 3E-06 6.5E-11 73.8 3.7 84 109-195 16-102 (261)
164 COG4976 Predicted methyltransf 98.1 1.5E-06 3.2E-11 75.6 1.7 41 125-168 126-166 (287)
165 TIGR00478 tly hemolysin TlyA f 98.0 2.3E-05 5E-10 67.3 7.2 39 124-164 75-113 (228)
166 COG2520 Predicted methyltransf 98.0 1.5E-05 3.2E-10 72.4 6.2 65 124-190 188-253 (341)
167 KOG1541 Predicted protein carb 97.9 7.9E-06 1.7E-10 70.8 3.7 42 124-168 50-91 (270)
168 PF05724 TPMT: Thiopurine S-me 97.9 2.1E-05 4.6E-10 66.9 5.4 74 114-190 27-112 (218)
169 PLN02366 spermidine synthase 97.9 4.7E-05 1E-09 68.0 7.8 64 123-187 90-157 (308)
170 COG1041 Predicted DNA modifica 97.9 2.7E-05 5.8E-10 70.8 6.1 65 124-191 197-262 (347)
171 PF05185 PRMT5: PRMT5 arginine 97.9 4.5E-05 9.7E-10 71.5 7.8 65 125-190 187-256 (448)
172 PRK11783 rlmL 23S rRNA m(2)G24 97.8 5E-05 1.1E-09 74.4 7.9 64 125-189 191-297 (702)
173 COG4076 Predicted RNA methylas 97.8 2.2E-05 4.8E-10 66.7 4.7 65 126-193 34-98 (252)
174 PRK11933 yebU rRNA (cytosine-C 97.8 5.9E-05 1.3E-09 71.1 8.0 64 124-187 113-176 (470)
175 PF02527 GidB: rRNA small subu 97.8 5.5E-05 1.2E-09 63.0 6.9 59 127-186 51-109 (184)
176 COG0116 Predicted N6-adenine-s 97.8 1.9E-05 4.2E-10 72.5 4.5 65 126-190 193-296 (381)
177 TIGR00417 speE spermidine synt 97.8 8.2E-05 1.8E-09 64.6 7.8 62 124-186 72-137 (270)
178 PF08003 Methyltransf_9: Prote 97.8 8.9E-05 1.9E-09 66.6 7.9 66 122-189 113-179 (315)
179 TIGR00308 TRM1 tRNA(guanine-26 97.8 5.3E-05 1.1E-09 69.5 6.4 64 126-189 46-109 (374)
180 PF00398 RrnaAD: Ribosomal RNA 97.8 5.5E-05 1.2E-09 65.4 6.1 63 124-191 30-92 (262)
181 KOG2899 Predicted methyltransf 97.7 3.9E-05 8.5E-10 67.2 4.7 46 125-171 59-104 (288)
182 KOG2730 Methylase [General fun 97.7 1.9E-05 4.2E-10 68.3 2.4 61 125-188 95-156 (263)
183 KOG4300 Predicted methyltransf 97.7 4.3E-05 9.4E-10 65.7 4.5 62 125-188 77-139 (252)
184 PRK03612 spermidine synthase; 97.7 7.4E-05 1.6E-09 70.9 6.5 63 124-187 297-366 (521)
185 PF03602 Cons_hypoth95: Conser 97.7 9.7E-05 2.1E-09 61.3 6.4 70 114-186 33-103 (183)
186 PF04816 DUF633: Family of unk 97.7 0.00013 2.8E-09 61.7 7.0 62 128-190 1-63 (205)
187 PRK01581 speE spermidine synth 97.7 6.9E-05 1.5E-09 68.8 5.6 64 124-188 150-220 (374)
188 COG0357 GidB Predicted S-adeno 97.7 9.8E-05 2.1E-09 63.2 6.0 65 125-190 68-132 (215)
189 PF00891 Methyltransf_2: O-met 97.7 0.00017 3.8E-09 60.8 7.4 54 124-185 100-153 (241)
190 PF08123 DOT1: Histone methyla 97.6 0.00016 3.5E-09 61.2 7.1 62 124-186 42-112 (205)
191 PF10294 Methyltransf_16: Puta 97.6 9.8E-05 2.1E-09 60.2 5.5 60 124-185 45-107 (173)
192 KOG3191 Predicted N6-DNA-methy 97.6 0.00015 3.3E-09 61.2 6.6 60 125-186 44-104 (209)
193 KOG0820 Ribosomal RNA adenine 97.5 0.00026 5.6E-09 63.0 6.8 67 124-193 58-127 (315)
194 KOG1500 Protein arginine N-met 97.5 0.00031 6.6E-09 64.5 6.8 63 124-189 177-240 (517)
195 PF05971 Methyltransf_10: Prot 97.4 0.00061 1.3E-08 61.0 7.7 69 113-183 85-162 (299)
196 KOG1661 Protein-L-isoaspartate 97.3 0.001 2.3E-08 57.2 7.4 101 89-190 36-159 (237)
197 PF03291 Pox_MCEL: mRNA cappin 97.3 0.00046 1E-08 62.3 5.6 60 124-185 62-131 (331)
198 COG0500 SmtA SAM-dependent met 97.2 0.0021 4.6E-08 44.8 7.5 58 128-186 52-109 (257)
199 PF12147 Methyltransf_20: Puta 97.2 0.0015 3.2E-08 58.6 8.0 64 124-187 135-200 (311)
200 TIGR02987 met_A_Alw26 type II 97.1 0.00064 1.4E-08 64.2 5.3 59 125-183 32-97 (524)
201 COG1092 Predicted SAM-dependen 97.1 0.00083 1.8E-08 62.2 5.6 63 125-189 218-282 (393)
202 PF02384 N6_Mtase: N-6 DNA Met 97.1 0.00071 1.5E-08 59.2 4.6 62 124-186 46-116 (311)
203 PF06080 DUF938: Protein of un 97.1 0.0014 3.1E-08 55.7 6.1 68 117-186 19-87 (204)
204 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.0 0.0019 4E-08 56.9 6.8 64 124-187 85-148 (283)
205 PLN02823 spermine synthase 97.0 0.0019 4.2E-08 58.5 6.8 64 124-188 103-170 (336)
206 COG0742 N6-adenine-specific me 97.0 0.0031 6.6E-08 53.0 7.5 61 124-186 43-104 (187)
207 PF10672 Methyltrans_SAM: S-ad 97.0 0.0027 5.7E-08 56.5 7.5 70 114-187 115-186 (286)
208 TIGR00006 S-adenosyl-methyltra 96.9 0.0043 9.3E-08 55.7 8.0 77 110-188 6-82 (305)
209 KOG1663 O-methyltransferase [S 96.8 0.0037 8E-08 54.2 6.9 63 125-187 74-137 (237)
210 COG0144 Sun tRNA and rRNA cyto 96.8 0.0062 1.3E-07 55.4 8.5 65 124-188 156-221 (355)
211 PRK11524 putative methyltransf 96.8 0.0029 6.3E-08 55.4 6.1 59 109-171 193-252 (284)
212 PF01555 N6_N4_Mtase: DNA meth 96.7 0.0016 3.5E-08 52.9 3.9 56 108-167 175-231 (231)
213 PRK13699 putative methylase; P 96.7 0.0047 1E-07 52.8 6.6 62 108-173 147-209 (227)
214 COG3897 Predicted methyltransf 96.7 0.0012 2.7E-08 56.2 2.8 66 124-193 79-144 (218)
215 TIGR03439 methyl_EasF probable 96.7 0.0062 1.3E-07 54.9 7.4 62 124-186 76-143 (319)
216 PF01728 FtsJ: FtsJ-like methy 96.7 0.00078 1.7E-08 54.4 1.5 36 124-160 23-59 (181)
217 PF09243 Rsm22: Mitochondrial 96.7 0.0048 1E-07 54.1 6.5 48 124-171 33-80 (274)
218 KOG2361 Predicted methyltransf 96.6 0.0015 3.4E-08 57.1 3.1 45 127-171 74-119 (264)
219 KOG1501 Arginine N-methyltrans 96.5 0.0047 1E-07 58.5 5.9 61 125-187 67-128 (636)
220 KOG2915 tRNA(1-methyladenosine 96.5 0.017 3.7E-07 51.6 8.6 62 124-186 105-168 (314)
221 PF07757 AdoMet_MTase: Predict 96.4 0.0025 5.5E-08 49.4 2.6 45 114-161 48-92 (112)
222 PF07091 FmrO: Ribosomal RNA m 96.4 0.013 2.8E-07 51.4 7.4 68 116-185 96-164 (251)
223 PF05219 DREV: DREV methyltran 96.2 0.007 1.5E-07 53.4 4.7 40 125-167 95-134 (265)
224 PF11599 AviRa: RRNA methyltra 96.0 0.0078 1.7E-07 52.1 4.1 47 124-170 51-98 (246)
225 KOG1975 mRNA cap methyltransfe 96.0 0.011 2.4E-07 53.9 5.2 60 124-185 117-182 (389)
226 COG3963 Phospholipid N-methylt 95.9 0.015 3.2E-07 48.7 4.9 59 124-188 48-107 (194)
227 PF01564 Spermine_synth: Sperm 95.8 0.023 5.1E-07 49.0 6.3 66 123-189 75-144 (246)
228 PHA01634 hypothetical protein 95.7 0.024 5.3E-07 45.7 5.2 49 123-173 27-75 (156)
229 PRK10742 putative methyltransf 95.6 0.029 6.2E-07 49.2 5.8 61 125-188 89-158 (250)
230 PF01795 Methyltransf_5: MraW 95.4 0.016 3.5E-07 52.1 3.8 77 110-188 6-82 (310)
231 COG2384 Predicted SAM-dependen 95.4 0.045 9.9E-07 47.3 6.2 59 126-185 18-77 (226)
232 PF13578 Methyltransf_24: Meth 95.2 0.012 2.6E-07 43.3 1.8 58 129-187 1-61 (106)
233 COG0421 SpeE Spermidine syntha 95.1 0.049 1.1E-06 48.3 5.7 63 126-189 78-144 (282)
234 KOG1122 tRNA and rRNA cytosine 95.0 0.12 2.7E-06 48.6 8.4 121 64-188 175-305 (460)
235 PF03059 NAS: Nicotianamine sy 94.9 0.061 1.3E-06 47.7 5.9 63 126-189 122-188 (276)
236 COG0293 FtsJ 23S rRNA methylas 94.6 0.059 1.3E-06 46.0 4.8 53 124-187 45-97 (205)
237 KOG4058 Uncharacterized conser 94.5 0.05 1.1E-06 45.1 3.9 62 124-187 72-134 (199)
238 KOG2940 Predicted methyltransf 94.3 0.052 1.1E-06 47.9 3.9 68 124-195 72-139 (325)
239 PRK11760 putative 23S rRNA C24 94.2 0.11 2.4E-06 47.7 6.0 55 124-188 211-265 (357)
240 COG0275 Predicted S-adenosylme 94.2 0.22 4.7E-06 45.0 7.7 73 115-188 14-86 (314)
241 cd00315 Cyt_C5_DNA_methylase C 94.1 0.065 1.4E-06 46.8 4.2 55 127-189 2-56 (275)
242 PF04989 CmcI: Cephalosporin h 93.7 0.024 5.3E-07 48.3 0.6 77 108-187 16-97 (206)
243 PF00145 DNA_methylase: C-5 cy 93.1 0.22 4.7E-06 42.8 5.7 54 127-189 2-55 (335)
244 KOG3987 Uncharacterized conser 92.9 0.017 3.6E-07 50.2 -1.6 41 125-168 113-153 (288)
245 PF05891 Methyltransf_PK: AdoM 92.5 0.14 3E-06 44.2 3.5 63 125-190 56-119 (218)
246 COG1189 Predicted rRNA methyla 92.4 0.18 3.8E-06 44.1 4.1 62 122-189 77-138 (245)
247 PF01269 Fibrillarin: Fibrilla 92.0 0.88 1.9E-05 39.5 7.9 62 124-187 73-134 (229)
248 PF05206 TRM13: Methyltransfer 91.9 0.28 6E-06 43.1 4.8 65 124-190 18-88 (259)
249 PF02636 Methyltransf_28: Puta 91.7 0.2 4.2E-06 43.0 3.6 46 126-171 20-72 (252)
250 COG2521 Predicted archaeal met 91.6 0.063 1.4E-06 47.3 0.5 62 124-187 134-197 (287)
251 KOG2651 rRNA adenine N-6-methy 91.6 0.27 5.9E-06 46.0 4.6 43 124-168 153-195 (476)
252 PF02005 TRM: N2,N2-dimethylgu 91.5 0.35 7.6E-06 44.6 5.3 63 126-188 51-115 (377)
253 KOG2078 tRNA modification enzy 91.3 0.098 2.1E-06 49.3 1.5 62 124-188 249-312 (495)
254 PF01739 CheR: CheR methyltran 91.2 0.16 3.5E-06 42.7 2.5 42 125-167 32-82 (196)
255 COG1867 TRM1 N2,N2-dimethylgua 90.7 0.47 1E-05 43.9 5.2 65 125-190 53-117 (380)
256 COG1352 CheR Methylase of chem 90.5 0.44 9.5E-06 42.1 4.7 43 125-167 97-147 (268)
257 PF05050 Methyltransf_21: Meth 90.3 0.77 1.7E-05 35.3 5.5 53 130-183 1-60 (167)
258 PF05148 Methyltransf_8: Hypot 89.8 0.28 6E-06 42.3 2.8 54 123-195 71-124 (219)
259 PF01861 DUF43: Protein of unk 89.7 2.5 5.4E-05 37.1 8.6 74 115-191 35-108 (243)
260 KOG4589 Cell division protein 89.5 0.45 9.7E-06 40.8 3.8 34 124-158 69-103 (232)
261 PRK10611 chemotaxis methyltran 89.4 0.47 1E-05 42.2 4.1 43 126-168 117-166 (287)
262 COG1889 NOP1 Fibrillarin-like 89.4 1.1 2.4E-05 38.7 6.1 61 123-186 75-135 (231)
263 COG0286 HsdM Type I restrictio 89.4 0.63 1.4E-05 44.2 5.1 62 124-185 186-251 (489)
264 KOG1227 Putative methyltransfe 89.1 0.15 3.3E-06 46.2 0.7 49 124-174 194-243 (351)
265 COG0863 DNA modification methy 88.8 1.4 3E-05 37.7 6.4 46 124-172 222-267 (302)
266 PF04672 Methyltransf_19: S-ad 88.6 0.81 1.8E-05 40.5 4.9 62 125-187 69-133 (267)
267 KOG3045 Predicted RNA methylas 87.8 0.49 1.1E-05 42.4 3.0 52 123-195 179-230 (325)
268 TIGR00675 dcm DNA-methyltransf 87.7 0.72 1.6E-05 41.1 4.1 53 128-188 1-53 (315)
269 KOG1331 Predicted methyltransf 86.5 0.28 6.1E-06 43.9 0.8 59 123-192 44-102 (293)
270 PRK00536 speE spermidine synth 85.9 1.6 3.5E-05 38.4 5.3 46 122-170 70-115 (262)
271 PF02254 TrkA_N: TrkA-N domain 85.7 1.5 3.3E-05 32.2 4.4 48 133-187 4-52 (116)
272 COG3129 Predicted SAM-dependen 85.6 0.96 2.1E-05 40.0 3.6 56 124-181 78-136 (292)
273 PF03141 Methyltransf_29: Puta 85.3 0.49 1.1E-05 45.3 1.8 38 126-168 119-161 (506)
274 KOG2912 Predicted DNA methylas 85.1 1.9 4.1E-05 39.8 5.3 70 112-182 84-160 (419)
275 KOG1269 SAM-dependent methyltr 84.4 1.1 2.4E-05 41.3 3.6 65 126-192 112-177 (364)
276 KOG3178 Hydroxyindole-O-methyl 84.1 1.7 3.7E-05 39.8 4.7 54 125-185 178-231 (342)
277 COG4262 Predicted spermidine s 83.3 2.5 5.5E-05 39.7 5.5 65 124-189 289-360 (508)
278 COG0270 Dcm Site-specific DNA 83.1 1.8 3.9E-05 38.7 4.4 59 125-190 3-61 (328)
279 COG1565 Uncharacterized conser 83.1 3.2 7E-05 38.4 6.0 50 122-172 75-132 (370)
280 cd08283 FDH_like_1 Glutathione 82.1 3.1 6.8E-05 37.3 5.6 44 124-168 184-228 (386)
281 COG3510 CmcI Cephalosporin hyd 81.8 4 8.7E-05 35.2 5.7 74 108-186 53-129 (237)
282 KOG2360 Proliferation-associat 81.7 3.1 6.6E-05 39.0 5.4 64 124-187 213-276 (413)
283 PRK07102 short chain dehydroge 81.4 8.8 0.00019 31.5 7.7 60 127-187 3-63 (243)
284 PRK08213 gluconate 5-dehydroge 81.0 10 0.00022 31.5 8.0 70 115-187 3-73 (259)
285 COG1568 Predicted methyltransf 79.0 5.4 0.00012 36.2 5.8 66 124-191 152-217 (354)
286 KOG2811 Uncharacterized conser 78.2 2.8 6.2E-05 39.1 4.0 61 126-188 184-247 (420)
287 PRK07326 short chain dehydroge 77.5 11 0.00024 30.5 7.1 58 125-186 6-65 (237)
288 PRK10458 DNA cytosine methylas 77.1 4.8 0.00011 38.2 5.4 59 126-188 89-147 (467)
289 KOG1098 Putative SAM-dependent 76.6 2.5 5.5E-05 41.9 3.3 36 124-159 44-79 (780)
290 PLN02668 indole-3-acetate carb 75.0 5.5 0.00012 37.1 5.0 20 126-145 65-84 (386)
291 PRK07454 short chain dehydroge 74.0 21 0.00046 29.1 7.9 61 125-187 6-67 (241)
292 COG1063 Tdh Threonine dehydrog 73.9 6.5 0.00014 35.3 5.1 41 127-168 171-212 (350)
293 PRK07904 short chain dehydroge 73.6 12 0.00026 31.4 6.4 62 125-187 8-72 (253)
294 PRK06124 gluconate 5-dehydroge 72.8 19 0.0004 29.7 7.3 60 124-186 10-71 (256)
295 PRK08945 putative oxoacyl-(acy 72.6 19 0.00042 29.5 7.4 59 125-185 12-72 (247)
296 KOG3924 Putative protein methy 72.5 2.6 5.7E-05 39.5 2.3 62 123-185 191-261 (419)
297 KOG2920 Predicted methyltransf 72.5 2.7 5.7E-05 37.6 2.2 38 124-163 116-153 (282)
298 PF07942 N2227: N2227-like pro 71.6 6.7 0.00015 34.8 4.5 43 124-169 56-98 (270)
299 PRK08703 short chain dehydroge 71.4 18 0.00039 29.5 6.9 60 125-186 6-67 (239)
300 KOG0024 Sorbitol dehydrogenase 71.4 9.5 0.00021 35.1 5.5 43 124-167 169-212 (354)
301 PRK06949 short chain dehydroge 70.6 26 0.00057 28.7 7.7 60 125-186 9-69 (258)
302 PRK06172 short chain dehydroge 70.5 26 0.00057 28.8 7.7 61 125-187 7-68 (253)
303 PRK06940 short chain dehydroge 70.3 16 0.00034 31.1 6.4 58 127-187 4-61 (275)
304 KOG2793 Putative N2,N2-dimethy 69.2 8.1 0.00018 33.9 4.5 40 126-168 88-127 (248)
305 PRK06125 short chain dehydroge 68.6 31 0.00067 28.6 7.8 60 125-186 7-68 (259)
306 PRK07666 fabG 3-ketoacyl-(acyl 68.0 35 0.00075 27.8 7.8 60 125-187 7-68 (239)
307 PRK07523 gluconate 5-dehydroge 67.6 31 0.00067 28.4 7.6 60 125-186 10-70 (255)
308 PF04445 SAM_MT: Putative SAM- 67.5 17 0.00037 31.6 6.1 60 126-188 77-145 (234)
309 PRK05599 hypothetical protein; 67.4 20 0.00043 29.8 6.4 59 128-187 3-61 (246)
310 PRK07576 short chain dehydroge 65.4 39 0.00085 28.3 7.9 60 125-186 9-69 (264)
311 PRK07814 short chain dehydroge 65.0 39 0.00084 28.2 7.7 60 125-187 10-71 (263)
312 PRK08643 acetoin reductase; Va 64.9 38 0.00081 27.9 7.6 60 126-187 3-63 (256)
313 PF01234 NNMT_PNMT_TEMT: NNMT/ 64.4 4.1 9E-05 35.8 1.7 47 124-172 56-102 (256)
314 PRK06181 short chain dehydroge 63.9 42 0.00091 27.7 7.7 58 127-187 3-62 (263)
315 PRK12384 sorbitol-6-phosphate 63.8 43 0.00093 27.6 7.7 59 126-186 3-64 (259)
316 KOG2671 Putative RNA methylase 63.8 3.5 7.6E-05 38.4 1.2 60 124-186 208-276 (421)
317 PF02086 MethyltransfD12: D12 63.5 10 0.00022 31.7 3.9 54 114-170 9-63 (260)
318 PRK08251 short chain dehydroge 63.4 46 0.00099 27.1 7.8 61 126-187 3-65 (248)
319 PF12692 Methyltransf_17: S-ad 62.8 18 0.00038 29.9 4.9 44 114-158 18-61 (160)
320 TIGR03206 benzo_BadH 2-hydroxy 62.2 48 0.001 26.9 7.6 60 125-186 3-63 (250)
321 KOG2352 Predicted spermine/spe 61.2 5.5 0.00012 38.2 2.0 45 125-170 296-340 (482)
322 PRK06914 short chain dehydroge 61.2 50 0.0011 27.6 7.8 61 126-187 4-66 (280)
323 PRK12939 short chain dehydroge 60.8 55 0.0012 26.5 7.7 61 125-187 7-68 (250)
324 PF11899 DUF3419: Protein of u 60.7 23 0.0005 32.8 6.0 45 124-171 35-79 (380)
325 PRK07062 short chain dehydroge 60.7 50 0.0011 27.3 7.6 61 125-187 8-71 (265)
326 PRK08340 glucose-1-dehydrogena 60.3 43 0.00093 27.8 7.1 57 127-186 2-59 (259)
327 KOG2352 Predicted spermine/spe 59.8 22 0.00047 34.2 5.7 63 127-192 51-113 (482)
328 PRK05786 fabG 3-ketoacyl-(acyl 59.4 58 0.0013 26.3 7.7 59 125-186 5-64 (238)
329 COG1064 AdhP Zn-dependent alco 59.2 14 0.0003 33.9 4.2 42 125-168 167-209 (339)
330 PF04072 LCM: Leucine carboxyl 59.0 16 0.00034 29.7 4.2 59 126-186 80-141 (183)
331 PRK09496 trkA potassium transp 59.0 18 0.00039 32.9 5.0 54 126-186 232-286 (453)
332 PRK07774 short chain dehydroge 58.8 64 0.0014 26.3 7.8 60 125-187 6-67 (250)
333 PRK09135 pteridine reductase; 58.6 62 0.0013 26.1 7.7 62 125-187 6-69 (249)
334 PRK10669 putative cation:proto 58.6 18 0.00039 34.5 5.1 47 133-186 423-470 (558)
335 KOG1709 Guanidinoacetate methy 58.4 23 0.00049 31.2 5.1 59 124-185 101-159 (271)
336 PF00107 ADH_zinc_N: Zinc-bind 58.2 19 0.00042 26.5 4.3 32 134-167 1-32 (130)
337 PRK06113 7-alpha-hydroxysteroi 57.6 64 0.0014 26.6 7.7 60 125-187 11-72 (255)
338 PRK05650 short chain dehydroge 56.7 59 0.0013 27.1 7.5 59 127-187 2-61 (270)
339 PRK03659 glutathione-regulated 56.5 22 0.00048 34.5 5.4 47 133-187 406-454 (601)
340 KOG0821 Predicted ribosomal RN 55.7 14 0.0003 32.7 3.5 62 123-187 49-110 (326)
341 TIGR01963 PHB_DH 3-hydroxybuty 55.4 67 0.0014 26.1 7.4 59 127-187 3-62 (255)
342 PRK12829 short chain dehydroge 54.6 61 0.0013 26.5 7.1 60 124-187 10-70 (264)
343 PRK07109 short chain dehydroge 54.5 73 0.0016 28.1 7.9 61 125-187 8-69 (334)
344 PRK05875 short chain dehydroge 54.3 79 0.0017 26.3 7.8 62 125-187 7-70 (276)
345 PRK07231 fabG 3-ketoacyl-(acyl 53.6 68 0.0015 25.9 7.2 58 126-187 6-65 (251)
346 PF07279 DUF1442: Protein of u 53.3 62 0.0013 28.0 7.0 60 124-184 41-105 (218)
347 PRK08339 short chain dehydroge 53.0 80 0.0017 26.5 7.7 62 125-187 8-70 (263)
348 PRK12429 3-hydroxybutyrate deh 52.6 57 0.0012 26.6 6.6 59 126-186 5-64 (258)
349 PRK07677 short chain dehydroge 51.8 77 0.0017 26.0 7.3 59 126-186 2-61 (252)
350 PRK12826 3-ketoacyl-(acyl-carr 51.5 86 0.0019 25.3 7.4 61 125-187 6-67 (251)
351 PRK05867 short chain dehydroge 51.3 78 0.0017 26.0 7.2 60 125-186 9-69 (253)
352 PRK07024 short chain dehydroge 51.1 38 0.00082 28.1 5.3 57 127-186 4-61 (257)
353 COG1062 AdhC Zn-dependent alco 51.0 42 0.00091 31.2 5.9 43 124-167 185-228 (366)
354 PRK03562 glutathione-regulated 51.0 33 0.00072 33.5 5.6 52 126-187 401-454 (621)
355 cd05188 MDR Medium chain reduc 50.5 45 0.00098 26.9 5.6 42 124-167 134-176 (271)
356 cd08237 ribitol-5-phosphate_DH 50.2 38 0.00083 29.7 5.4 43 124-167 163-207 (341)
357 COG1255 Uncharacterized protei 49.6 46 0.00099 26.5 5.1 47 126-186 15-62 (129)
358 PLN02253 xanthoxin dehydrogena 49.5 84 0.0018 26.3 7.3 60 125-187 18-78 (280)
359 PTZ00357 methyltransferase; Pr 49.1 59 0.0013 33.4 6.9 63 127-189 703-777 (1072)
360 KOG1252 Cystathionine beta-syn 49.0 29 0.00064 32.1 4.6 64 96-163 185-253 (362)
361 KOG1253 tRNA methyltransferase 48.9 7.1 0.00015 37.7 0.6 63 124-186 109-172 (525)
362 TIGR02415 23BDH acetoin reduct 48.8 1E+02 0.0022 25.1 7.5 56 128-186 3-60 (254)
363 PRK06194 hypothetical protein; 48.6 65 0.0014 27.0 6.5 59 126-186 7-66 (287)
364 cd08254 hydroxyacyl_CoA_DH 6-h 48.5 48 0.001 28.1 5.7 42 124-167 165-207 (338)
365 KOG2782 Putative SAM dependent 48.5 32 0.0007 30.4 4.5 56 114-170 33-88 (303)
366 PF00106 adh_short: short chai 48.3 47 0.001 25.2 5.1 57 128-187 3-64 (167)
367 PF03492 Methyltransf_7: SAM d 47.9 15 0.00032 33.2 2.5 22 124-145 16-37 (334)
368 PRK08217 fabG 3-ketoacyl-(acyl 47.8 1.1E+02 0.0024 24.7 7.5 59 125-186 5-65 (253)
369 TIGR01500 sepiapter_red sepiap 47.5 84 0.0018 26.0 6.9 59 127-187 2-67 (256)
370 PRK09880 L-idonate 5-dehydroge 47.5 48 0.001 29.0 5.6 42 125-167 170-212 (343)
371 PRK13394 3-hydroxybutyrate deh 47.2 1.2E+02 0.0026 24.8 7.7 61 125-187 7-68 (262)
372 PRK08085 gluconate 5-dehydroge 47.0 1.1E+02 0.0024 25.1 7.5 60 125-186 9-69 (254)
373 PRK15057 UDP-glucose 6-dehydro 46.9 23 0.0005 32.6 3.6 34 134-167 7-40 (388)
374 PRK01747 mnmC bifunctional tRN 46.6 28 0.00062 33.9 4.4 35 125-159 58-103 (662)
375 PRK07831 short chain dehydroge 46.6 1.1E+02 0.0025 25.2 7.5 60 126-186 18-80 (262)
376 PRK07035 short chain dehydroge 46.4 1.1E+02 0.0025 24.9 7.5 60 125-187 8-69 (252)
377 PRK05565 fabG 3-ketoacyl-(acyl 46.3 1.1E+02 0.0024 24.5 7.3 59 126-187 6-67 (247)
378 KOG0822 Protein kinase inhibit 46.0 43 0.00093 33.0 5.3 64 126-190 369-436 (649)
379 PRK05653 fabG 3-ketoacyl-(acyl 45.9 1.3E+02 0.0028 24.1 7.6 59 126-186 6-65 (246)
380 PRK08862 short chain dehydroge 45.8 1E+02 0.0023 25.4 7.2 59 125-186 5-65 (227)
381 PRK06196 oxidoreductase; Provi 45.2 89 0.0019 27.0 6.9 57 125-187 26-83 (315)
382 PRK09186 flagellin modificatio 45.1 1.1E+02 0.0025 24.8 7.3 61 125-186 4-66 (256)
383 KOG1596 Fibrillarin and relate 43.9 31 0.00068 30.9 3.8 55 124-185 156-215 (317)
384 TIGR00497 hsdM type I restrict 43.9 48 0.001 31.4 5.4 49 126-174 219-270 (501)
385 KOG2198 tRNA cytosine-5-methyl 43.2 68 0.0015 29.9 6.0 65 124-188 155-222 (375)
386 PLN02780 ketoreductase/ oxidor 42.3 1.3E+02 0.0028 26.5 7.5 60 125-185 53-114 (320)
387 PRK06197 short chain dehydroge 42.2 1.5E+02 0.0033 25.2 7.9 64 124-188 15-80 (306)
388 PRK15182 Vi polysaccharide bio 42.1 30 0.00065 32.3 3.7 39 126-166 7-45 (425)
389 PF07101 DUF1363: Protein of u 42.1 8.5 0.00018 29.6 0.0 19 128-146 6-24 (124)
390 KOG0022 Alcohol dehydrogenase, 41.9 60 0.0013 30.1 5.4 43 124-167 192-235 (375)
391 PRK07775 short chain dehydroge 41.9 1.6E+02 0.0036 24.6 7.9 60 125-186 10-70 (274)
392 PRK09291 short chain dehydroge 41.8 1.4E+02 0.0031 24.3 7.4 58 126-186 3-62 (257)
393 PRK06138 short chain dehydroge 41.6 1.4E+02 0.0031 24.1 7.3 60 125-187 5-65 (252)
394 TIGR03201 dearomat_had 6-hydro 41.4 66 0.0014 28.2 5.6 42 124-167 166-208 (349)
395 PRK07453 protochlorophyllide o 40.9 1.3E+02 0.0028 26.0 7.3 61 125-187 6-67 (322)
396 PRK06198 short chain dehydroge 40.9 1.4E+02 0.0031 24.4 7.2 60 125-186 6-67 (260)
397 PRK07832 short chain dehydroge 40.8 95 0.0021 25.9 6.3 57 128-186 3-61 (272)
398 KOG1201 Hydroxysteroid 17-beta 40.8 98 0.0021 28.0 6.5 59 124-187 37-98 (300)
399 PRK07890 short chain dehydroge 39.9 1.8E+02 0.0038 23.7 7.7 59 126-186 6-65 (258)
400 PRK07067 sorbitol dehydrogenas 39.8 1.3E+02 0.0027 24.8 6.8 56 126-186 7-63 (257)
401 PRK08293 3-hydroxybutyryl-CoA 39.6 86 0.0019 27.1 5.9 42 127-169 5-46 (287)
402 PRK05866 short chain dehydroge 39.5 1.6E+02 0.0035 25.3 7.6 61 125-187 40-101 (293)
403 PRK07806 short chain dehydroge 39.4 1.5E+02 0.0033 24.0 7.2 59 126-187 7-68 (248)
404 PRK08303 short chain dehydroge 38.6 1.3E+02 0.0028 26.2 7.0 61 125-187 8-79 (305)
405 PRK08265 short chain dehydroge 38.5 1.5E+02 0.0032 24.6 7.1 58 125-187 6-64 (261)
406 PLN02989 cinnamyl-alcohol dehy 38.5 1E+02 0.0022 26.5 6.2 62 125-187 5-68 (325)
407 PRK08267 short chain dehydroge 38.2 93 0.002 25.6 5.7 57 127-187 3-60 (260)
408 PRK07063 short chain dehydroge 37.5 1.9E+02 0.0041 23.8 7.5 62 125-187 7-70 (260)
409 COG1748 LYS9 Saccharopine dehy 37.2 91 0.002 29.1 6.0 56 126-188 2-60 (389)
410 PRK07097 gluconate 5-dehydroge 36.9 1.9E+02 0.0041 23.9 7.4 61 125-187 10-71 (265)
411 PRK07533 enoyl-(acyl carrier p 36.5 1.5E+02 0.0034 24.6 6.9 60 125-186 10-71 (258)
412 PRK12823 benD 1,6-dihydroxycyc 36.4 1.8E+02 0.0039 23.8 7.2 58 126-186 9-67 (260)
413 PLN02353 probable UDP-glucose 36.2 63 0.0014 30.7 4.8 39 127-166 3-43 (473)
414 PRK07478 short chain dehydroge 36.0 2.1E+02 0.0046 23.3 7.6 60 126-187 7-67 (254)
415 PRK06935 2-deoxy-D-gluconate 3 36.0 1.9E+02 0.0042 23.7 7.3 61 124-187 14-75 (258)
416 PRK06114 short chain dehydroge 36.0 2E+02 0.0043 23.6 7.4 60 125-186 8-69 (254)
417 PF03721 UDPG_MGDP_dh_N: UDP-g 35.9 68 0.0015 26.3 4.5 36 128-166 3-40 (185)
418 PRK08628 short chain dehydroge 35.9 1.8E+02 0.0038 23.8 7.1 59 125-186 7-66 (258)
419 PRK06200 2,3-dihydroxy-2,3-dih 35.7 1.8E+02 0.004 23.9 7.2 57 125-186 6-63 (263)
420 PRK08277 D-mannonate oxidoredu 35.7 2E+02 0.0044 23.9 7.5 60 125-187 10-71 (278)
421 PLN02896 cinnamyl-alcohol dehy 35.6 1.5E+02 0.0033 25.9 7.0 61 124-187 9-70 (353)
422 PRK12481 2-deoxy-D-gluconate 3 35.5 1.7E+02 0.0037 24.1 7.0 59 125-187 8-67 (251)
423 PRK05855 short chain dehydroge 35.4 1.2E+02 0.0027 27.8 6.6 60 126-187 316-376 (582)
424 COG0677 WecC UDP-N-acetyl-D-ma 35.2 25 0.00055 33.3 2.0 39 126-166 10-49 (436)
425 PF05575 V_cholerae_RfbT: Vibr 35.1 57 0.0012 27.8 3.9 55 113-169 69-123 (286)
426 COG5379 BtaA S-adenosylmethion 34.9 87 0.0019 29.0 5.2 45 124-171 63-107 (414)
427 PRK09072 short chain dehydroge 34.9 2.2E+02 0.0047 23.5 7.5 59 125-187 5-65 (263)
428 PRK12745 3-ketoacyl-(acyl-carr 34.7 2E+02 0.0043 23.4 7.2 59 126-186 3-63 (256)
429 COG0569 TrkA K+ transport syst 34.6 78 0.0017 26.8 4.8 48 134-186 7-55 (225)
430 TIGR02818 adh_III_F_hyde S-(hy 34.0 1E+02 0.0022 27.4 5.6 43 124-167 185-228 (368)
431 PRK09242 tropinone reductase; 34.0 2.3E+02 0.005 23.2 7.5 61 125-186 9-71 (257)
432 PRK08594 enoyl-(acyl carrier p 33.2 1.5E+02 0.0032 24.8 6.3 60 125-187 7-71 (257)
433 TIGR03451 mycoS_dep_FDH mycoth 33.1 1.1E+02 0.0023 26.9 5.6 43 124-167 176-219 (358)
434 PRK06182 short chain dehydroge 33.0 1.7E+02 0.0036 24.4 6.5 54 126-187 4-58 (273)
435 PF02737 3HCDH_N: 3-hydroxyacy 33.0 1.1E+02 0.0025 24.7 5.4 43 128-171 2-44 (180)
436 cd08232 idonate-5-DH L-idonate 32.8 1.1E+02 0.0023 26.3 5.4 42 124-166 165-207 (339)
437 KOG3048 Molecular chaperone Pr 32.5 23 0.0005 28.9 1.1 12 124-135 82-93 (153)
438 PRK12824 acetoacetyl-CoA reduc 32.1 1.8E+02 0.004 23.3 6.5 57 127-187 4-64 (245)
439 PRK09496 trkA potassium transp 32.1 95 0.0021 28.2 5.2 48 133-186 6-54 (453)
440 TIGR01202 bchC 2-desacetyl-2-h 32.0 96 0.0021 26.8 5.0 42 125-167 145-187 (308)
441 PRK09424 pntA NAD(P) transhydr 31.8 97 0.0021 29.9 5.4 42 124-167 164-206 (509)
442 cd08255 2-desacetyl-2-hydroxye 31.8 1.2E+02 0.0027 25.0 5.5 42 125-167 98-140 (277)
443 PRK05854 short chain dehydroge 31.4 2.4E+02 0.0052 24.4 7.5 62 125-187 14-77 (313)
444 PRK05876 short chain dehydroge 31.3 2.5E+02 0.0053 23.7 7.4 61 125-187 6-67 (275)
445 PRK05993 short chain dehydroge 31.3 1.6E+02 0.0036 24.7 6.3 53 126-186 5-58 (277)
446 PRK12743 oxidoreductase; Provi 31.1 2.6E+02 0.0057 22.9 7.4 60 126-187 3-64 (256)
447 TIGR03366 HpnZ_proposed putati 30.9 1.3E+02 0.0027 25.5 5.5 43 124-167 120-163 (280)
448 TIGR01832 kduD 2-deoxy-D-gluco 30.9 2.5E+02 0.0055 22.7 7.2 59 125-187 5-64 (248)
449 PRK10538 malonic semialdehyde 30.6 1.5E+02 0.0033 24.2 5.8 54 128-186 3-57 (248)
450 PRK06139 short chain dehydroge 30.4 2.3E+02 0.0049 25.1 7.2 60 125-186 7-67 (330)
451 KOG2798 Putative trehalase [Ca 30.2 1.3E+02 0.0029 27.9 5.6 42 125-169 151-192 (369)
452 PRK12828 short chain dehydroge 30.1 2.2E+02 0.0047 22.6 6.5 57 126-186 8-65 (239)
453 PRK12935 acetoacetyl-CoA reduc 30.1 3E+02 0.0064 22.2 7.5 61 125-187 6-68 (247)
454 PLN02740 Alcohol dehydrogenase 29.7 1.2E+02 0.0027 27.0 5.4 43 124-167 198-241 (381)
455 PRK12827 short chain dehydroge 29.5 3E+02 0.0064 22.0 7.5 60 126-187 7-71 (249)
456 COG4301 Uncharacterized conser 29.5 1.2E+02 0.0026 27.3 5.2 47 124-171 78-128 (321)
457 PRK08993 2-deoxy-D-gluconate 3 29.3 2.4E+02 0.0052 23.2 6.8 58 125-186 10-68 (253)
458 PRK06179 short chain dehydroge 29.2 1.4E+02 0.003 24.8 5.3 51 126-186 5-56 (270)
459 PRK08589 short chain dehydroge 29.1 2.7E+02 0.0058 23.3 7.2 60 125-187 6-66 (272)
460 COG5459 Predicted rRNA methyla 29.0 53 0.0012 31.0 3.0 46 124-169 113-158 (484)
461 KOG3201 Uncharacterized conser 29.0 28 0.00061 29.4 1.1 47 125-172 30-77 (201)
462 PRK07041 short chain dehydroge 28.3 2.3E+02 0.005 22.6 6.4 52 134-187 5-57 (230)
463 PRK08219 short chain dehydroge 28.3 1.2E+02 0.0026 24.1 4.7 54 127-186 5-58 (227)
464 PF03435 Saccharop_dh: Sacchar 28.1 1.9E+02 0.004 25.9 6.3 54 128-187 1-58 (386)
465 PF03514 GRAS: GRAS domain fam 28.0 1.4E+02 0.0031 27.2 5.7 47 124-171 110-167 (374)
466 TIGR02685 pter_reduc_Leis pter 27.9 2.7E+02 0.0059 23.0 7.0 61 126-187 2-64 (267)
467 PRK06720 hypothetical protein; 27.8 3.2E+02 0.0069 21.8 7.5 59 125-186 16-76 (169)
468 cd05278 FDH_like Formaldehyde 27.6 1.7E+02 0.0036 25.1 5.7 41 125-166 168-209 (347)
469 PF13561 adh_short_C2: Enoyl-( 27.3 2.1E+02 0.0046 23.3 6.2 53 132-186 1-55 (241)
470 PRK06101 short chain dehydroge 26.6 1.9E+02 0.004 23.6 5.6 55 127-187 3-58 (240)
471 PRK06924 short chain dehydroge 26.4 1.7E+02 0.0037 23.8 5.4 56 127-187 3-60 (251)
472 TIGR03325 BphB_TodD cis-2,3-di 26.3 2.8E+02 0.0061 22.8 6.8 56 125-186 5-62 (262)
473 PRK08278 short chain dehydroge 26.3 2.8E+02 0.0061 23.2 6.8 61 125-187 6-74 (273)
474 PRK08309 short chain dehydroge 26.2 3.1E+02 0.0068 22.2 6.9 56 127-186 2-58 (177)
475 cd08281 liver_ADH_like1 Zinc-d 25.9 1.7E+02 0.0036 25.9 5.6 41 126-167 193-234 (371)
476 PRK06701 short chain dehydroge 25.9 2.6E+02 0.0056 23.9 6.6 60 125-186 46-107 (290)
477 PRK07417 arogenate dehydrogena 25.8 1.4E+02 0.003 25.7 4.9 37 128-167 3-41 (279)
478 TIGR02622 CDP_4_6_dhtase CDP-g 25.8 1.8E+02 0.0038 25.4 5.7 58 125-186 4-63 (349)
479 PRK08264 short chain dehydroge 25.6 2.5E+02 0.0054 22.6 6.2 53 125-186 6-60 (238)
480 PRK07819 3-hydroxybutyryl-CoA 25.5 2.2E+02 0.0047 24.9 6.1 42 126-170 6-49 (286)
481 TIGR02822 adh_fam_2 zinc-bindi 25.4 1.8E+02 0.0039 25.3 5.6 42 124-167 165-207 (329)
482 PRK07201 short chain dehydroge 25.3 2.2E+02 0.0048 27.1 6.6 61 125-187 371-432 (657)
483 PRK06123 short chain dehydroge 25.3 3.1E+02 0.0067 22.1 6.7 59 126-186 3-63 (248)
484 cd08245 CAD Cinnamyl alcohol d 25.1 2E+02 0.0043 24.4 5.8 41 124-166 162-203 (330)
485 TIGR00027 mthyl_TIGR00027 meth 24.9 2.1E+02 0.0046 24.7 5.9 59 124-185 81-142 (260)
486 cd08230 glucose_DH Glucose deh 24.5 1.9E+02 0.0041 25.3 5.6 41 124-166 172-216 (355)
487 COG3146 Uncharacterized protei 24.1 30 0.00066 32.1 0.5 13 3-15 299-313 (387)
488 PRK07530 3-hydroxybutyryl-CoA 24.0 2.2E+02 0.0049 24.4 5.9 44 126-170 5-48 (292)
489 PLN02827 Alcohol dehydrogenase 23.6 1.9E+02 0.0041 25.9 5.5 42 124-166 193-235 (378)
490 PRK05872 short chain dehydroge 23.6 3.2E+02 0.007 23.2 6.8 58 125-186 9-68 (296)
491 PRK08507 prephenate dehydrogen 23.3 1.7E+02 0.0038 24.9 5.0 38 128-166 3-42 (275)
492 PRK08415 enoyl-(acyl carrier p 23.1 4E+02 0.0087 22.6 7.2 61 125-187 5-67 (274)
493 PLN02540 methylenetetrahydrofo 22.9 1.6E+02 0.0034 29.0 5.1 62 124-185 27-98 (565)
494 PRK07985 oxidoreductase; Provi 22.8 3.8E+02 0.0083 22.9 7.1 60 125-186 49-111 (294)
495 PRK15181 Vi polysaccharide bio 22.8 1.6E+02 0.0035 25.8 4.9 60 126-187 16-81 (348)
496 PRK06079 enoyl-(acyl carrier p 22.7 3.4E+02 0.0074 22.4 6.6 58 125-186 7-66 (252)
497 PRK07825 short chain dehydroge 22.6 2.3E+02 0.005 23.5 5.6 54 126-186 6-61 (273)
498 PRK12744 short chain dehydroge 22.5 4.3E+02 0.0094 21.6 7.4 61 125-187 8-73 (257)
499 PRK08263 short chain dehydroge 22.3 4.1E+02 0.0089 22.1 7.1 55 126-186 4-60 (275)
500 PRK06180 short chain dehydroge 22.1 4.1E+02 0.009 22.1 7.1 55 126-186 5-61 (277)
No 1
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.2e-14 Score=127.45 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=92.0
Q ss_pred hhHHHHhhhcCCCCccccccccceeeEecccCCCCC-CCCCCCChhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCC
Q 029244 70 DLVALEFAELNLPVSNKITGELGHARIRQHVNPLSS-SFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPD 148 (196)
Q Consensus 70 ~~v~~~~~~~~L~~~~~i~g~~~~~r~r~hvnP~~~-~~~~p~~l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~ 148 (196)
+++.++...+|+ ++|.|...|+.++..+++-+. |.+.++.+.++...........|||||||+|.+++.+|+..|+
T Consensus 58 ~~~~rr~~~~P~---~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~ 134 (280)
T COG2890 58 ELLERRAEGEPV---AYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPD 134 (280)
T ss_pred HHHHHHHCCCCH---hHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcC
Confidence 577788888999 999999999999999999998 3344444555533221111127999999999999999999998
Q ss_pred CccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 149 SGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 149 ~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
.+|+|+|+|+++++.|++|++.+++.++.++..|..+
T Consensus 135 -~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~ 171 (280)
T COG2890 135 -AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE 171 (280)
T ss_pred -CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc
Confidence 8999999999999999999999998777777777654
No 2
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.54 E-value=2.5e-14 Score=132.03 Aligned_cols=111 Identities=17% Similarity=0.092 Sum_probs=92.7
Q ss_pred hhHHHHhhhcCCCCccccccccceeeEecccCCCCC-CCCCCCChhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCC
Q 029244 70 DLVALEFAELNLPVSNKITGELGHARIRQHVNPLSS-SFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPD 148 (196)
Q Consensus 70 ~~v~~~~~~~~L~~~~~i~g~~~~~r~r~hvnP~~~-~~~~p~~l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~ 148 (196)
+++.++...+|| |+|+|++.|+..+..++|.+. +.+.++.+.++...... ++.+|||||||+|.+++.+++..|.
T Consensus 200 ~~v~RR~~gePl---qYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~-~~~rVLDLGcGSG~IaiaLA~~~p~ 275 (423)
T PRK14966 200 RLAQRRLNGEPV---AYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP-ENGRVWDLGTGSGAVAVTVALERPD 275 (423)
T ss_pred HHHHHHHcCCCc---eeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC-CCCEEEEEeChhhHHHHHHHHhCCC
Confidence 578899999999 999999999999999999887 33333345555432222 3458999999999999999998888
Q ss_pred CccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 149 SGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 149 ~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
.+|+|+|+|++|++.|++|++.++. ++.++++|+.+
T Consensus 276 -a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e 311 (423)
T PRK14966 276 -AFVRASDISPPALETARKNAADLGA-RVEFAHGSWFD 311 (423)
T ss_pred -CEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhc
Confidence 7999999999999999999998875 79999999854
No 3
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=99.53 E-value=5.4e-15 Score=125.32 Aligned_cols=96 Identities=33% Similarity=0.483 Sum_probs=83.2
Q ss_pred ceeeEecccCCCCCC-CCCCCCh--hhHHHHccCC-----CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHH
Q 029244 92 GHARIRQHVNPLSSS-FTVPAPI--PDWSEVYKNP-----TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVK 163 (196)
Q Consensus 92 ~~~r~r~hvnP~~~~-~~~p~~l--~~w~~~f~~~-----~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~ 163 (196)
++||+|.|.||++++ +.+|... ++|...++.- ....+.|||||.|.+++.|+.++|+ ..++|+||+.+..+
T Consensus 20 r~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsd 98 (249)
T KOG3115|consen 20 RYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSD 98 (249)
T ss_pred HHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHH
Confidence 999999999999994 5777754 8999987642 3368999999999999999999999 89999999999999
Q ss_pred HHHHHHHHhC-------CCCeEEEEcccccCc
Q 029244 164 RAEFWVQELA-------LSNIALTLISRKNII 188 (196)
Q Consensus 164 ~A~~~~~~~g-------l~nI~f~~~Da~~L~ 188 (196)
+.+.+++.+. +.|+.++..++....
T Consensus 99 YVk~RI~ALR~~~a~~~~~ni~vlr~namk~l 130 (249)
T KOG3115|consen 99 YVKERIQALRRTSAEGQYPNISVLRTNAMKFL 130 (249)
T ss_pred HHHHHHHHHhccccccccccceeeeccchhhc
Confidence 9999999875 678888888876543
No 4
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.52 E-value=5.5e-14 Score=123.14 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=91.5
Q ss_pred hhHHHHh-hhcCCCCccccccccceeeEecccCCCCC-CCCCCCChhhHHH--HccCCCCCcEEEEeccccHHHHHHHHH
Q 029244 70 DLVALEF-AELNLPVSNKITGELGHARIRQHVNPLSS-SFTVPAPIPDWSE--VYKNPTLPLMVDIGSGSGRFLIWLARR 145 (196)
Q Consensus 70 ~~v~~~~-~~~~L~~~~~i~g~~~~~r~r~hvnP~~~-~~~~p~~l~~w~~--~f~~~~~~~ILDIGCGsG~~~i~LA~~ 145 (196)
+++.++. .++|| ++|.|++.|+...+.++|.+. +.+.++.+..+.. ........+|||+|||+|.+++.+++.
T Consensus 66 ~~~~rr~~~~~Pl---~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~ 142 (284)
T TIGR03533 66 ELIERRIEERIPV---AYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYA 142 (284)
T ss_pred HHHHHHHhCCCcH---HHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHH
Confidence 4788887 68999 999999999999999999888 3333333433322 121113358999999999999999999
Q ss_pred CCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEccccc
Q 029244 146 NPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKN 186 (196)
Q Consensus 146 ~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~ 186 (196)
.|+ .+|+|+|+++++++.|++|++.+++. +|.++.+|+.+
T Consensus 143 ~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~ 183 (284)
T TIGR03533 143 FPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA 183 (284)
T ss_pred CCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 887 78999999999999999999999885 69999999854
No 5
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.52 E-value=3.2e-14 Score=133.81 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=96.2
Q ss_pred hhHHHHhhhcCCCCccccccccceeeEecccCCCCC-CCCCCCChhhHHH-Hcc------------------------CC
Q 029244 70 DLVALEFAELNLPVSNKITGELGHARIRQHVNPLSS-SFTVPAPIPDWSE-VYK------------------------NP 123 (196)
Q Consensus 70 ~~v~~~~~~~~L~~~~~i~g~~~~~r~r~hvnP~~~-~~~~p~~l~~w~~-~f~------------------------~~ 123 (196)
+++.++..++|| ++|.|++.|+.+++.|+|-+. |.+.++.+++|.. .+. ..
T Consensus 61 ~~~~rr~~~ePl---qYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (506)
T PRK01544 61 KLLERRLKHEPI---AYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCND 137 (506)
T ss_pred HHHHHHHcCCCH---HHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence 588999999999 999999999999999999999 6666666777743 221 01
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~ 186 (196)
....|||||||+|.+++.++...|+ ..|+|+|+|+++++.|++|++.+++. ++.++.+|+.+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~ 200 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE 200 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh
Confidence 2347999999999999999999888 79999999999999999999988875 59999999754
No 6
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.52 E-value=5.4e-14 Score=122.64 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=93.3
Q ss_pred hhHHHHhhhcCCCCccccccccceeeEecccCCCCC-CCCCCCChhhHHH-Hc-cCCCCCcEEEEeccccHHHHHHHHHC
Q 029244 70 DLVALEFAELNLPVSNKITGELGHARIRQHVNPLSS-SFTVPAPIPDWSE-VY-KNPTLPLMVDIGSGSGRFLIWLARRN 146 (196)
Q Consensus 70 ~~v~~~~~~~~L~~~~~i~g~~~~~r~r~hvnP~~~-~~~~p~~l~~w~~-~f-~~~~~~~ILDIGCGsG~~~i~LA~~~ 146 (196)
.++.++...+|| ++|+|+..|+...+.++|.+. +.+.++.+.++.. .+ ......+|||||||+|.+++.++...
T Consensus 60 ~~~~~r~~~~pl---~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~ 136 (284)
T TIGR00536 60 RLVLRRVKGVPV---AYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF 136 (284)
T ss_pred HHHHHHHcCCCH---HHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC
Confidence 478899999999 999999999999999999887 3444444555432 22 22122589999999999999999999
Q ss_pred CCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEccccc
Q 029244 147 PDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKN 186 (196)
Q Consensus 147 p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~ 186 (196)
++ ..|+|+|+++++++.|++|++.+++.+ +.|+.+|+.+
T Consensus 137 ~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 137 PN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred CC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc
Confidence 87 789999999999999999999988864 9999999765
No 7
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=1e-13 Score=122.95 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=91.4
Q ss_pred hhHHHHh-hhcCCCCccccccccceeeEecccCCCCCCCCCCC--ChhhHHH--HccCCCCCcEEEEeccccHHHHHHHH
Q 029244 70 DLVALEF-AELNLPVSNKITGELGHARIRQHVNPLSSSFTVPA--PIPDWSE--VYKNPTLPLMVDIGSGSGRFLIWLAR 144 (196)
Q Consensus 70 ~~v~~~~-~~~~L~~~~~i~g~~~~~r~r~hvnP~~~~~~~p~--~l~~w~~--~f~~~~~~~ILDIGCGsG~~~i~LA~ 144 (196)
+++.++. ..+|| ++|+|++.|+...+.++|-+. ++.|+ .++.+.. .........|||+|||+|.+++.+++
T Consensus 78 ~~~~rr~~~~~Pl---~yi~g~~~F~g~~f~v~~~vl-ipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~ 153 (307)
T PRK11805 78 ELIERRINERIPA---AYLTNEAWFCGLEFYVDERVL-VPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAY 153 (307)
T ss_pred HHHHHHHHCCccH---HHHcCcceEcCcEEEECCCCc-CCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHH
Confidence 5788887 58999 999999999999999999887 34444 3334322 12221125799999999999999999
Q ss_pred HCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEccccc
Q 029244 145 RNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKN 186 (196)
Q Consensus 145 ~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~ 186 (196)
.+|. .+|+|+|+++++++.|++|++.+++. +|+++.+|+.+
T Consensus 154 ~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 195 (307)
T PRK11805 154 AFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA 195 (307)
T ss_pred HCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh
Confidence 9988 78999999999999999999999875 59999999754
No 8
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.46 E-value=2.2e-13 Score=117.39 Aligned_cols=111 Identities=17% Similarity=0.073 Sum_probs=88.7
Q ss_pred hhHHHHhhhcCCCCccccccccceeeEecccCCCCCC-CCCCCChhhHHHHccC--CCCCcEEEEeccccHHHHHHHHHC
Q 029244 70 DLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSS-FTVPAPIPDWSEVYKN--PTLPLMVDIGSGSGRFLIWLARRN 146 (196)
Q Consensus 70 ~~v~~~~~~~~L~~~~~i~g~~~~~r~r~hvnP~~~~-~~~p~~l~~w~~~f~~--~~~~~ILDIGCGsG~~~i~LA~~~ 146 (196)
++|+++..++|| |+|.|...|..++..++|.+.. .+.++.+.++...... ....+|||+|||+|.+++.+++..
T Consensus 32 ~~~~rr~~~~Pl---~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~ 108 (251)
T TIGR03704 32 AMVDRRVAGLPL---EHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL 108 (251)
T ss_pred HHHHHHHcCCCH---HHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC
Confidence 589999999999 9999999999999999998872 2223334444332221 123479999999999999999998
Q ss_pred CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 147 PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 147 p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+. .+|+|+|+++++++.|++|++.++ ++++++|+.+.
T Consensus 109 ~~-~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~ 145 (251)
T TIGR03704 109 DG-IELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDA 145 (251)
T ss_pred CC-CEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhh
Confidence 87 789999999999999999998765 47888887653
No 9
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.44 E-value=2.7e-13 Score=111.96 Aligned_cols=74 Identities=38% Similarity=0.680 Sum_probs=67.5
Q ss_pred hhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 113 l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
...|...|+. ..++|||||||+|.++..+|+.+|+ .+|+|||++++|++.|++++.+.+++||+++++|+.+++
T Consensus 6 ~~~~~~~f~~-~~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~ 79 (194)
T TIGR00091 6 KPDFATVFGN-KAPLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL 79 (194)
T ss_pred CCCHHHHhCC-CCceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH
Confidence 4679888875 5689999999999999999999998 899999999999999999999999999999999998654
No 10
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.41 E-value=7.3e-13 Score=110.55 Aligned_cols=76 Identities=38% Similarity=0.660 Sum_probs=66.8
Q ss_pred CCChhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 110 PAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 110 p~~l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+....+|...|+. ..+.+||||||.|.+++.+|+.+|+ .+++|||++.+.+..+.+++.+.+++|+.++++|+..+
T Consensus 4 ~~~~~~~~~~f~~-~~~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~ 79 (195)
T PF02390_consen 4 QNEPLDWQEIFGN-DNPLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL 79 (195)
T ss_dssp -SCTTCHHHHHTS-CCEEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH
T ss_pred ccCccCHHHHcCC-CCCeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH
Confidence 3355789999987 5679999999999999999999999 89999999999999999999999999999999999874
No 11
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.37 E-value=4.2e-12 Score=106.51 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=88.1
Q ss_pred hhHHHHhhhcCCCCccccccccceeeEecccCCCCCCCCCCC--ChhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCC
Q 029244 70 DLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPA--PIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNP 147 (196)
Q Consensus 70 ~~v~~~~~~~~L~~~~~i~g~~~~~r~r~hvnP~~~~~~~p~--~l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p 147 (196)
+.++++...+|| +++.+...|+..+..+++-+. .+.|. .+..|...........|||+|||+|.+++.+++..|
T Consensus 35 ~~~~~~~~~~pl---~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~ 110 (251)
T TIGR03534 35 ALLARRAKGEPV---AYILGEREFYGLDFKVSPGVL-IPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP 110 (251)
T ss_pred HHHHHHHcCCCH---HHHcccceEeceEEEECCCcc-cCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC
Confidence 467777788888 888888888888877776655 23333 233333222222345899999999999999999988
Q ss_pred CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 148 DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 148 ~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
. ..|+|+|+++++++.|++++...++.++.++.+|+.+
T Consensus 111 ~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 111 D-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE 148 (251)
T ss_pred C-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc
Confidence 8 7899999999999999999999888889999999865
No 12
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.37 E-value=3.4e-12 Score=94.48 Aligned_cols=59 Identities=27% Similarity=0.380 Sum_probs=53.9
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISR 184 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da 184 (196)
+.+|||||||+|.+++.+++.++. .+|+|||++++|++.|++++.+.+. .+|+|+++|+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPG-ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 468999999999999999998788 8999999999999999999966654 6799999999
No 13
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.36 E-value=2.9e-12 Score=101.05 Aligned_cols=64 Identities=30% Similarity=0.528 Sum_probs=57.8
Q ss_pred CCCcEEEEeccccHHHHHHH-HHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLA-RRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA-~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
.+.+|||||||+|.++..|+ +.+|. .+|+|||++++|++.|++++++.++.|++|+++|+.+++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~-~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~ 67 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPG-AKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP 67 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTT-SEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCC-CEEEEEECcHHHHHHhhcccccccccccceEEeehhccc
Confidence 35689999999999999999 55676 789999999999999999999999999999999999966
No 14
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.35 E-value=5e-12 Score=107.95 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=90.5
Q ss_pred hhHHHHhhhcCCCCccccccccceeeEecccCCCCC-CCCCCCChhhHHHH-ccCCCCCcEEEEeccccHHHHHHHHHCC
Q 029244 70 DLVALEFAELNLPVSNKITGELGHARIRQHVNPLSS-SFTVPAPIPDWSEV-YKNPTLPLMVDIGSGSGRFLIWLARRNP 147 (196)
Q Consensus 70 ~~v~~~~~~~~L~~~~~i~g~~~~~r~r~hvnP~~~-~~~~p~~l~~w~~~-f~~~~~~~ILDIGCGsG~~~i~LA~~~p 147 (196)
+++.++...+|+ ++|.|...|+.....++|.+. +.+..+.+.+|... ....+...|||+|||+|.+++.++...|
T Consensus 55 ~~~~~~~~~~p~---~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~ 131 (275)
T PRK09328 55 ALVARRAAGEPL---QYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP 131 (275)
T ss_pred HHHHHHHcCCCH---HHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC
Confidence 477788888899 999999999999999998776 33444445666542 2222456899999999999999999998
Q ss_pred CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 148 DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 148 ~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
. ..|+|+|+++++++.|++++......++.++.+|+.+
T Consensus 132 ~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 132 D-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE 169 (275)
T ss_pred C-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC
Confidence 8 7999999999999999999883334579999999754
No 15
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.33 E-value=3.4e-12 Score=109.31 Aligned_cols=99 Identities=17% Similarity=0.294 Sum_probs=52.7
Q ss_pred eeeEecccCCCCCCCCCCCCh------hhHHHHc----cCCCCCcEEEEeccccHHHHHHHHHC-CCCccEEEEecCHHH
Q 029244 93 HARIRQHVNPLSSSFTVPAPI------PDWSEVY----KNPTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKL 161 (196)
Q Consensus 93 ~~r~r~hvnP~~~~~~~p~~l------~~w~~~f----~~~~~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis~~m 161 (196)
-.+++..++.++..|+....+ ..|+... ...++..|||+|||+|.+++.+++.. ++ ..|+|+|+|++|
T Consensus 6 ~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~-~~v~~vD~s~~M 84 (233)
T PF01209_consen 6 EQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPN-GKVVGVDISPGM 84 (233)
T ss_dssp -------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHH
T ss_pred HHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCc-cEEEEecCCHHH
Confidence 345667777777777655432 3464432 22245699999999999999999885 45 789999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEcccccCcccCC
Q 029244 162 VKRAEFWVQELALSNIALTLISRKNIIREGS 192 (196)
Q Consensus 162 l~~A~~~~~~~gl~nI~f~~~Da~~L~~e~~ 192 (196)
++.|++++...+..||+++++|+++++.++.
T Consensus 85 L~~a~~k~~~~~~~~i~~v~~da~~lp~~d~ 115 (233)
T PF01209_consen 85 LEVARKKLKREGLQNIEFVQGDAEDLPFPDN 115 (233)
T ss_dssp HHHHHHHHHHTT--SEEEEE-BTTB--S-TT
T ss_pred HHHHHHHHHhhCCCCeeEEEcCHHHhcCCCC
Confidence 9999999999888899999999999987653
No 16
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=3.9e-12 Score=109.80 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=68.5
Q ss_pred hhHHHHcc----CCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 114 PDWSEVYK----NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 114 ~~w~~~f~----~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
..|..... ..++.+|||||||||.+++.+++..+. ..|+|+|+|+.|++.|++++.+.+..+|+|+.+|+++||.
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~-g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf 115 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF 115 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCC-ceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC
Confidence 56866432 124679999999999999999999987 8999999999999999999999888889999999999998
Q ss_pred cCCc
Q 029244 190 EGSC 193 (196)
Q Consensus 190 e~~~ 193 (196)
++-.
T Consensus 116 ~D~s 119 (238)
T COG2226 116 PDNS 119 (238)
T ss_pred CCCc
Confidence 7543
No 17
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.32 E-value=4.5e-12 Score=108.63 Aligned_cols=75 Identities=36% Similarity=0.649 Sum_probs=69.6
Q ss_pred hhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 113 l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
..+|.+.|+.+..+++||||||.|.+++.+|+++|+ .+++|||+....+..|.+++.+.+++||.+++.|+.++.
T Consensus 37 ~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l 111 (227)
T COG0220 37 PGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVL 111 (227)
T ss_pred cchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHH
Confidence 467999998765689999999999999999999999 899999999999999999999999999999999998654
No 18
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.28 E-value=1.3e-11 Score=102.74 Aligned_cols=74 Identities=32% Similarity=0.598 Sum_probs=66.7
Q ss_pred hhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccc-ccCc
Q 029244 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISR-KNII 188 (196)
Q Consensus 113 l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da-~~L~ 188 (196)
...|...|.. ++..|||||||+|.++..+++..|. .+|+|||++++|++.|++++...++.|+.++++|+ ..++
T Consensus 30 ~~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~ 104 (202)
T PRK00121 30 PLDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL 104 (202)
T ss_pred CCCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH
Confidence 3679999887 6689999999999999999999887 78999999999999999999988888999999999 5544
No 19
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.23 E-value=3.9e-11 Score=98.83 Aligned_cols=64 Identities=28% Similarity=0.198 Sum_probs=59.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
.+.+|||||||+|.+++.+|...+. .+|+|||++++|++.+++++++.+++|++++++|+.++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~ 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc
Confidence 3578999999999999999998887 789999999999999999999999888999999998874
No 20
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.22 E-value=3.7e-11 Score=105.94 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=89.1
Q ss_pred hhHHHHhhhcCCCCccccccccceeeEecccCCCCC-CCCCCCChhhHHHH-ccC---CCCCcEEEEeccccHHHHHHHH
Q 029244 70 DLVALEFAELNLPVSNKITGELGHARIRQHVNPLSS-SFTVPAPIPDWSEV-YKN---PTLPLMVDIGSGSGRFLIWLAR 144 (196)
Q Consensus 70 ~~v~~~~~~~~L~~~~~i~g~~~~~r~r~hvnP~~~-~~~~p~~l~~w~~~-f~~---~~~~~ILDIGCGsG~~~i~LA~ 144 (196)
++-.+|+++.|| |+|-|+..|..+.-...|.+. |.+++++.++|... ..+ .....|||+|||+|.+++.++.
T Consensus 92 ~~~~~R~~r~Pl---QYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~ 168 (328)
T KOG2904|consen 92 WACLQRYKRMPL---QYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLH 168 (328)
T ss_pred HHHHHHHhcCCh---hheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHh
Confidence 355688999999 999999999999999999999 55566566666432 111 1334799999999999999999
Q ss_pred HCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEc
Q 029244 145 RNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLI 182 (196)
Q Consensus 145 ~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~ 182 (196)
..|+ .+|+|||.|+.++..|.+|++++++.+ +..+.-
T Consensus 169 ~L~~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 169 GLPQ-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred cCCC-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEec
Confidence 9998 899999999999999999999998765 655533
No 21
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.22 E-value=3.8e-11 Score=110.16 Aligned_cols=71 Identities=23% Similarity=0.469 Sum_probs=63.6
Q ss_pred HHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 116 w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
....+....++.+||||||+|.+++.+|+.+|+ .+|+|||++++|++.|.+++.+.+++||.++.+|+..+
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l 184 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL 184 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh
Confidence 344454456789999999999999999999999 89999999999999999999999999999999999754
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.19 E-value=7.1e-11 Score=98.18 Aligned_cols=64 Identities=22% Similarity=0.135 Sum_probs=59.6
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
+.+|||||||+|.+++.+++..|. .+|+|+|++++|++.|++++++.+++|++++.+|+.++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~ 109 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ 109 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC
Confidence 568999999999999999998888 7999999999999999999999999889999999988754
No 23
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.18 E-value=1.3e-10 Score=97.24 Aligned_cols=65 Identities=23% Similarity=0.234 Sum_probs=57.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++.+|||||||+|.++..||+..+....|+|+|+++++++.|++++++.+++|++++.+|+.+..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC
Confidence 55799999999999999999986532579999999999999999999999999999999987643
No 24
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.18 E-value=3.5e-11 Score=88.73 Aligned_cols=62 Identities=23% Similarity=0.405 Sum_probs=51.7
Q ss_pred EEEEeccccHHHHHHHHHC---CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccC
Q 029244 128 MVDIGSGSGRFLIWLARRN---PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREG 191 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~~---p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~ 191 (196)
|||||||+|..+..+++.+ |. .+++|||++++|++.++++....+. +++|+++|+.+++..+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHS
T ss_pred CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccC
Confidence 7999999999999999986 44 5899999999999999999988776 7999999999887543
No 25
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.16 E-value=1.3e-10 Score=94.12 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=58.5
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
....|||||||+|.+++.+++..|+ .+|+++|+++++++.++++++.+++.+++++..|..+-.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~ 94 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL 94 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC
T ss_pred cCCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc
Confidence 3468999999999999999999998 789999999999999999999999988999999986533
No 26
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.14 E-value=3.5e-10 Score=84.34 Aligned_cols=62 Identities=26% Similarity=0.325 Sum_probs=56.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
.+.+|||||||+|.++..+++..|. .+|+|+|+++.+++.++++++..++.++.++.+|+.+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPE 80 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccc
Confidence 3468999999999999999999887 7899999999999999999998888889999998765
No 27
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.7e-10 Score=94.76 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=61.7
Q ss_pred hhHHH-HccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 114 PDWSE-VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 114 ~~w~~-~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
.-|.. ..++..+..|+|+|||||.+++..+...+. .|+|||+++++++.+++|+.+ ...+|.|+.+|+.++..
T Consensus 34 il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~~ 107 (198)
T COG2263 34 ILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFRG 107 (198)
T ss_pred HHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcCC
Confidence 34544 445556678999999999999999999876 799999999999999999998 45679999999988754
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.10 E-value=4.2e-10 Score=93.96 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=58.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHC-CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIRE 190 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e 190 (196)
++.+|||||||+|.++..+++.. +. ..|+|+|++++|++.|+++++..+++++.++.+|+.+++.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD 111 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC
Confidence 45699999999999999999885 45 68999999999999999999888888899999999877643
No 29
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.10 E-value=4.6e-10 Score=91.59 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=56.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRK 185 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~ 185 (196)
....|||||||+|.+++.+++.+|+ .+|+|+|+++++++.|+++++..++.+++++.+|+.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~ 91 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP 91 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch
Confidence 4568999999999999999999887 789999999999999999999888888999999875
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.09 E-value=3.2e-10 Score=96.90 Aligned_cols=67 Identities=10% Similarity=0.183 Sum_probs=58.3
Q ss_pred CCCcEEEEeccccHHHHHHHHH--CCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccCcccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARR--NPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNIIREG 191 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~--~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L~~e~ 191 (196)
++.+|||||||+|.+++.+++. .|+ .+|+|||+|++|++.|+++++..+.. +++++.+|+.+++.++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~-~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~ 125 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDN-CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN 125 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC
Confidence 4568999999999999999984 467 78999999999999999999887764 6999999998876554
No 31
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.09 E-value=5.7e-10 Score=92.47 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=58.7
Q ss_pred HHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 116 w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
+.+.+......+|||||||+|.+++.||+.. .+|+|+|+|++|++.++++++..++.|+++..+|+.+++.
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~ 92 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF 92 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc
Confidence 3333333344689999999999999999874 4699999999999999999999888889999999877643
No 32
>PLN02672 methionine S-methyltransferase
Probab=99.08 E-value=2.5e-10 Score=115.53 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=81.1
Q ss_pred cccccccceeeEecccCCCCC-CCCCCCChhhHHHHccCC--CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHH
Q 029244 85 NKITGELGHARIRQHVNPLSS-SFTVPAPIPDWSEVYKNP--TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKL 161 (196)
Q Consensus 85 ~~i~g~~~~~r~r~hvnP~~~-~~~~p~~l~~w~~~f~~~--~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~m 161 (196)
.+..|...|+.+...++|.+. |.+..+.+.+|....++. .+..|||||||+|.+++.+++.+|. ..|+|+|+|+++
T Consensus 76 ~~~~G~~~F~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~A 154 (1082)
T PLN02672 76 DDYEGFRNRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRA 154 (1082)
T ss_pred cCCCCeEEecCCceeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHH
Confidence 334488899999999999999 444444556663322211 2357999999999999999999987 789999999999
Q ss_pred HHHHHHHHHHhCC----------------CCeEEEEcccccCc
Q 029244 162 VKRAEFWVQELAL----------------SNIALTLISRKNII 188 (196)
Q Consensus 162 l~~A~~~~~~~gl----------------~nI~f~~~Da~~L~ 188 (196)
++.|++|++.+++ .+|+|+++|+.+..
T Consensus 155 l~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 155 VKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred HHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 9999999987643 36999999987644
No 33
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.08 E-value=4.4e-10 Score=92.45 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=56.9
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
.+.+|||||||+|.+++.+++..+. ..|+|||+++++++.+++++++.++.|++++.+|+.+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 4568999999999999999988887 7899999999999999999999998889999999864
No 34
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.05 E-value=6.5e-10 Score=96.14 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=56.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHC-CCCccEEEEecCHHHHHHHHHHHHH---hCCCCeEEEEcccccCcccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQE---LALSNIALTLISRKNIIREG 191 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis~~ml~~A~~~~~~---~gl~nI~f~~~Da~~L~~e~ 191 (196)
++.+|||||||+|.++..+++.. +. .+|+|+|+|++|++.|+++... ....+++++++|+.+++.++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~ 143 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD 143 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence 45689999999999999999875 45 6899999999999999987642 23457999999999987654
No 35
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.04 E-value=1.2e-09 Score=91.15 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=56.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L~ 188 (196)
++.+|||||||+|.++..+++..+...+|+|+|+++++++.|+++++..++. +++++.+|+.+..
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence 4468999999999999999988652258999999999999999999988875 5999999987643
No 36
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.03 E-value=9e-10 Score=93.09 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=57.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccCcccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNIIREG 191 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L~~e~ 191 (196)
++..|||||||+|.++..+++.. |+ .+|+|+|++++|++.|++++...+. .+++++.+|+.+++.+.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~-~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 122 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPN-VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN 122 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC
Confidence 45689999999999999999874 66 7899999999999999999887654 46999999999876543
No 37
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=8e-10 Score=97.65 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=62.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccCcccCCcC
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNIIREGSCR 194 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L~~e~~~~ 194 (196)
.++.+|||||||.|.+++.+|+.+ + .+|+||++|+++.+.+++++++.|+. ||++...|..++... +++
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~-v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~-fDr 140 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-G-VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP-FDR 140 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-C-CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc-cce
Confidence 467899999999999999999998 4 68999999999999999999999997 899999999887654 544
No 38
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.02 E-value=2.1e-09 Score=90.17 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=57.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++.+|||||||+|.++..+++..+....|+|+|+++++++.|+++++..++.||+++.+|+.+..
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~ 140 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY 140 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC
Confidence 45789999999999999999886422589999999999999999999999889999999987543
No 39
>PLN02244 tocopherol O-methyltransferase
Probab=98.97 E-value=2.2e-09 Score=96.17 Aligned_cols=65 Identities=25% Similarity=0.307 Sum_probs=57.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccCccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNIIRE 190 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L~~e 190 (196)
...+|||||||+|.++..|++.+ . .+|+|||+++.|++.|++++++.++. ++.|+.+|+.+++.+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g-~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~ 183 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-G-ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFE 183 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCC
Confidence 44689999999999999999987 3 57999999999999999999888874 699999999887654
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.95 E-value=2.6e-09 Score=89.01 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=54.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L~ 188 (196)
...+|||||||+|.++..+++.. ..|+|+|++++|++.|++++...+. .++.|..+|+.+++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC 117 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence 45789999999999999999864 4699999999999999999987775 47999999988766
No 41
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.94 E-value=3.2e-09 Score=88.77 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=59.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++..++|||||+|.+++.+|...|. .+|++||.++++++..++|+++.|.+|+.++.+|+-+..
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L 97 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL 97 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence 5569999999999999999988888 899999999999999999999999999999999987653
No 42
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.93 E-value=3.1e-09 Score=90.76 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=53.4
Q ss_pred HHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 117 ~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
...+....+..|||||||+|.++..+++.+|. .+|+|+|+|+.|++.|+++ +++++.+|+.+++.
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~ 86 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP 86 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC
Confidence 33333334578999999999999999999887 7899999999999998652 57899999987653
No 43
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.92 E-value=4.7e-09 Score=89.25 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=54.8
Q ss_pred HHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 116 w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
+.......+..+|||||||+|.++..+++.+|. .+|+|||++++|++.|+++. .++.|+.+|+.++.
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~ 89 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPA-ARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ 89 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC
Confidence 333333334568999999999999999999887 78999999999999998763 56889999987664
No 44
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.92 E-value=6.6e-09 Score=85.97 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=51.4
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
..+|||||||+|.+++.+|+.. ..|+|+|+++.|++.++++++..++. +.+..+|+...+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~ 90 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAA 90 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcc
Confidence 4689999999999999999864 46999999999999999999888874 788888876543
No 45
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.91 E-value=2.5e-09 Score=100.88 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=63.9
Q ss_pred hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 114 ~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
..|...|+. .++.+||||||.|.+++.+|+.+|+ .+++|||++...+..+.+++.+.+++|+.++..|+..+
T Consensus 338 i~~eklf~~-~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~ 409 (506)
T PRK01544 338 FSKEKLVNE-KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLI 409 (506)
T ss_pred CCHHHhCCC-CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 455555653 6799999999999999999999999 89999999999999999999999999999999987543
No 46
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.91 E-value=3e-09 Score=96.06 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=59.8
Q ss_pred hhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 113 l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
+..|...+....+..|||+|||+|.+++.|++... .|+|||++++|++.|++|++.+++.|++|+.+|+.++.
T Consensus 186 l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 186 MLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH
Confidence 34454433322224699999999999999999873 59999999999999999999999999999999998754
No 47
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.91 E-value=3e-09 Score=90.96 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=54.9
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L~ 188 (196)
...+|||||||+|.++..+++.. .+|+|+|++++|++.|++++...++ .+++++++|+.++.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA 106 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence 44689999999999999999874 4699999999999999999998886 47999999998764
No 48
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.91 E-value=2.5e-09 Score=94.75 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=55.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
+..|||+|||+|.+++.+|+.. ..|+|+|++++|++.|+++++.+++.|++|+.+|+.++.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~ 234 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA 234 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH
Confidence 4689999999999999999864 469999999999999999999999988999999998754
No 49
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.90 E-value=1.6e-09 Score=76.58 Aligned_cols=60 Identities=22% Similarity=0.439 Sum_probs=48.4
Q ss_pred EEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccCCc
Q 029244 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREGSC 193 (196)
Q Consensus 129 LDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~~~ 193 (196)
||||||+|.++..+++. +. .+|+|+|+++++++.++++... .++.+..+|+.+++.++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~-~~v~~~D~~~~~~~~~~~~~~~---~~~~~~~~d~~~l~~~~~s 60 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GG-ASVTGIDISEEMLEQARKRLKN---EGVSFRQGDAEDLPFPDNS 60 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TT-CEEEEEES-HHHHHHHHHHTTT---STEEEEESBTTSSSS-TT-
T ss_pred CEecCcCCHHHHHHHhc-cC-CEEEEEeCCHHHHHHHHhcccc---cCchheeehHHhCcccccc
Confidence 89999999999999998 55 6899999999999999998753 3466999999999876543
No 50
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.90 E-value=1.6e-09 Score=97.85 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=54.2
Q ss_pred hhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 113 l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+.+|...+..+....+||+.||.|.|++.||+... .|+|||+++++++.|++|++.++++|++|+.++++++
T Consensus 185 l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 185 LYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 34554444333334799999999999999999874 5999999999999999999999999999999888765
No 51
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.89 E-value=5.8e-09 Score=89.60 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=57.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHC-CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
++.+|||||||+|..++.+++.. +. .+|+|+|++++|++.|+++.+..++.++.|+.+|+++++.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~ 142 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV 142 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC
Confidence 45699999999999998888764 44 5799999999999999999998888899999999988764
No 52
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.1e-08 Score=91.07 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=71.8
Q ss_pred EecccCCCCCCCCCCCCh-hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC
Q 029244 96 IRQHVNPLSSSFTVPAPI-PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174 (196)
Q Consensus 96 ~r~hvnP~~~~~~~p~~l-~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl 174 (196)
.+.+-.|.+++......= .-..+.++.....+|||+|||.|.+++.+|+.+|+ ..++-+|++..+++.|++|++.+++
T Consensus 129 ~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~ 207 (300)
T COG2813 129 LTFKTLPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGV 207 (300)
T ss_pred eEEEeCCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCC
Confidence 344556666655443321 22344555444458999999999999999999998 8999999999999999999999999
Q ss_pred CCeEEEEcccccCcccCCcC
Q 029244 175 SNIALTLISRKNIIREGSCR 194 (196)
Q Consensus 175 ~nI~f~~~Da~~L~~e~~~~ 194 (196)
.|..++..|+.+=..+.++.
T Consensus 208 ~~~~v~~s~~~~~v~~kfd~ 227 (300)
T COG2813 208 ENTEVWASNLYEPVEGKFDL 227 (300)
T ss_pred CccEEEEecccccccccccE
Confidence 88766667765433334443
No 53
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.88 E-value=3.6e-09 Score=78.87 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=55.7
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccCc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNII 188 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L~ 188 (196)
.+|||+|||+|.+++.+++.. . .+++|+|+++..++.|+.++...++ .+++++.+|+.++.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 63 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP 63 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH
T ss_pred CEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch
Confidence 479999999999999999998 5 6899999999999999999999887 46999999998765
No 54
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.88 E-value=6.5e-09 Score=85.86 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=55.5
Q ss_pred CCCcEEEEeccccHHHHHHHHHC-CCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L 187 (196)
.+..|||||||+|.+++.+++.. +. .+|+|+|++++|++.++++++..++ .++.++.+|+.++
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI 104 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence 45689999999999999999864 44 6899999999999999999999884 6899999998764
No 55
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.87 E-value=9e-09 Score=94.21 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=54.6
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC---CCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL---SNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl---~nI~f~~~Da~~ 186 (196)
..+|||||||+|.+++.+++.+|+ .+|+++|+|+.|++.|++|++.++. .+++++..|+..
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 358999999999999999999998 8999999999999999999988764 368999988753
No 56
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.87 E-value=5e-09 Score=91.10 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=59.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L~~ 189 (196)
...+|||||||+|.+++.+|++.++ ..|+|||++++|.+.|+++++.+++. +|+++++|+.++..
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~ 109 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK 109 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh
Confidence 3579999999999999999999888 89999999999999999999988875 59999999987654
No 57
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.86 E-value=1.1e-08 Score=84.95 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=54.7
Q ss_pred cEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccCc
Q 029244 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNII 188 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L~ 188 (196)
+|||||||+|.++..+++.+++ .+|+|+|+++++++.+++++...++. ++.++..|+.+.+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~ 63 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP 63 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence 6999999999999999999887 78999999999999999999888874 5999999986543
No 58
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.86 E-value=5.1e-09 Score=94.79 Aligned_cols=72 Identities=19% Similarity=0.328 Sum_probs=59.5
Q ss_pred hhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 113 l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+.+|...+..+....+||++||+|.+++.+++... .|+|||+++++++.|++|+..++++|++|+.+|+.++
T Consensus 195 l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 195 MLEWALDATKGSKGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred HHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 45554433222234799999999999999998864 5999999999999999999999999999999999774
No 59
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.86 E-value=4.3e-09 Score=97.29 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
++.+|||||||+|.+++.+++.. + .+|+|+|+|++|++.|+++....+ .++.|..+|+.+++.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~-~-~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF-D-VHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTY 328 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCC
Confidence 45689999999999999999876 4 579999999999999998876333 369999999987653
No 60
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.85 E-value=5.8e-09 Score=89.64 Aligned_cols=71 Identities=23% Similarity=0.256 Sum_probs=58.7
Q ss_pred hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCccc
Q 029244 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIRE 190 (196)
Q Consensus 114 ~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e 190 (196)
.+.....+......|+|||||+|+.+-.|++++|+ ..|+|||-|++|++.|+++ +.|++|..+|+.+...+
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p~ 90 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKPE 90 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCCC
Confidence 34444444334458999999999999999999999 8999999999999999765 46899999999887664
No 61
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.85 E-value=7e-09 Score=92.99 Aligned_cols=63 Identities=25% Similarity=0.264 Sum_probs=53.5
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccCccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNIIRE 190 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L~~e 190 (196)
+.+|||||||+|.++..|++.. .+|+|||++++|++.|++++...+. .+|+++++|+++++.+
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~ 195 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE 195 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc
Confidence 3589999999999999999753 5799999999999999988765543 4799999999988654
No 62
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.84 E-value=6.2e-09 Score=91.24 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=51.5
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~L~~ 189 (196)
++.+|||||||.|.+++.+|+++ + .+|+||.+|++..+.+++++++.|+.+ +++...|..+++.
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g-~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-G-CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG 126 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-C-cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC
Confidence 56799999999999999999997 4 689999999999999999999999864 9999999988765
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.83 E-value=1.2e-08 Score=82.60 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=53.5
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
+..+|||||||+|.+++.+++..+ .|+|+|++++|++.++++++.++. +++++.+|+.+.+.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~ 80 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGVR 80 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccccC
Confidence 346799999999999999998864 499999999999999999988775 68999999866543
No 64
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.83 E-value=8.1e-09 Score=95.46 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=55.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++..|||+|||+|.+++.+|+.. ..|+|+|++++|++.|++|++.++++|++|+.+|+.+.
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED 357 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence 44689999999999999999886 36999999999999999999999998999999998753
No 65
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.83 E-value=2e-08 Score=87.71 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=52.5
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
..+|||||||+|.+++.+|+.. ..|+|+|+|++|++.++++++..++ ++++...|+...
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~ 179 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSA 179 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcc
Confidence 3589999999999999999874 4699999999999999999998888 799988888654
No 66
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.83 E-value=1.7e-08 Score=83.79 Aligned_cols=60 Identities=28% Similarity=0.339 Sum_probs=51.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccc
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRK 185 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~ 185 (196)
.+...|||||||+|.++..+++... .|+|+|++++|++.|+++....+. .++.+..+|+.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 122 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE 122 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch
Confidence 3456899999999999999998753 499999999999999999988776 46999999854
No 67
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.83 E-value=2.4e-08 Score=83.01 Aligned_cols=60 Identities=22% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++.+|||||||+|.++..+++... .|+++|+++++++.|++++++.++.|+.+..+|+.+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 137 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWK 137 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCccc
Confidence 456899999999999999998853 599999999999999999999999899999999765
No 68
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.82 E-value=1.6e-08 Score=90.76 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=57.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++..|||||||+|.+++.+++..+....|+|||++++|++.|++++++.+++|+.++.+|+.+..
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence 45689999999999999999987532469999999999999999999999989999999986543
No 69
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.81 E-value=1.4e-08 Score=85.16 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=49.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
....|||||||+|.++..|++..+. ..++|||+|++|++.|+++. .++.+..+|+.+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~ 99 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD 99 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence 4458999999999999999998776 78999999999999998764 357788888776
No 70
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=5.6e-09 Score=97.07 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=62.3
Q ss_pred hhhHHHHccCC-CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 113 IPDWSEVYKNP-TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 113 l~~w~~~f~~~-~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
+..|...+.+. ++..+||+-||.|.|++.||+... .|+|||+++++++.|++|++.++++|++|..+|++++..
T Consensus 281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 45565544332 446899999999999999998764 599999999999999999999999999999999987654
No 71
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.80 E-value=6.6e-09 Score=87.94 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=54.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|||||||+|+++..||+.......|++||+.+++++.|+++++..++.||.++.+|...-
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 5679999999999999999998643257999999999999999999999999999999997653
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.80 E-value=3.2e-08 Score=89.28 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=53.3
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..+|||||||+|.+++.+++.+|. ..|+++|+++.|++.|+++++.+++. .+++..|+..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~ 256 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFS 256 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEccccc
Confidence 357999999999999999999997 78999999999999999999988874 5777788654
No 73
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.1e-08 Score=84.19 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=60.1
Q ss_pred hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 114 ~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..|.+...-.++.+|||||||+|+.+..||+... +|+.||+.++..+.|++|++..|+.||.+.++|...
T Consensus 62 A~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~ 131 (209)
T COG2518 62 ARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK 131 (209)
T ss_pred HHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence 3444444333567999999999999999999974 599999999999999999999999999999999764
No 74
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.79 E-value=1.1e-08 Score=88.88 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=53.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREG 191 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~ 191 (196)
.+..|||||||+|.++..+++..+ +|+|+|++++|++.+++++.. ++++++.+|+.+++.+.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE 103 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH
Confidence 446899999999999999999965 499999999999999987642 57999999999876554
No 75
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.79 E-value=2e-08 Score=86.90 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=51.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCC--ccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDS--GNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIRE 190 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~--~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e 190 (196)
....|||||||+|.++..+++..+.. ..|+|+|+|++|++.|.++ ..++.+..+|+.+++.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~ 148 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFA 148 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCc
Confidence 34679999999999999999887641 2699999999999999765 25789999999988754
No 76
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.79 E-value=2.3e-08 Score=80.56 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=54.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREG 191 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~ 191 (196)
.+..|||||||+|.++..+++.. .+|+|+|+++.+++.+++++.. .+|++++.+|+.+++.++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPK 75 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccc
Confidence 34689999999999999999884 4699999999999999998854 457999999999876543
No 77
>PRK14967 putative methyltransferase; Provisional
Probab=98.78 E-value=3e-08 Score=83.32 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=52.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|||+|||+|.+++.+++.. . .+|+|+|+++++++.++++++..++ ++.++.+|+.+.
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~-~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~ 96 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-A-GSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA 96 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh
Confidence 45689999999999999999864 3 3799999999999999999988876 588999998654
No 78
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.77 E-value=5e-09 Score=90.67 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=56.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIRE 190 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e 190 (196)
.+.+|||||||-|.++..||+.. .+|+|+|+++++|+.|+..+.+.++. |.+.+.+++++...
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~ 121 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASA 121 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhc
Confidence 45799999999999999999997 46999999999999999999988864 88888888888765
No 79
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.77 E-value=2.7e-08 Score=88.99 Aligned_cols=61 Identities=20% Similarity=0.138 Sum_probs=51.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC-----CCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-----LSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g-----l~nI~f~~~Da~~L 187 (196)
++.+|||||||+|.+++.+++.. ..|+|+|+|++|++.|++++...+ ..++.|..+|+.++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc
Confidence 45689999999999999999874 469999999999999999987652 24688988988665
No 80
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.76 E-value=1.8e-08 Score=92.45 Aligned_cols=61 Identities=21% Similarity=0.308 Sum_probs=55.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+...|||+|||+|.+++.+|+... .|+|||++++|++.|++|++.+++.|++|+.+|+.++
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~ 352 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV 352 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH
Confidence 346899999999999999998753 5999999999999999999999999999999998763
No 81
>PRK05785 hypothetical protein; Provisional
Probab=98.75 E-value=1.7e-08 Score=85.69 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=47.5
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREG 191 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~ 191 (196)
...|||||||+|.++..+++.. . .+|+|+|+|++|++.|+++. .++++|+++++.+.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~-~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp~~d 108 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-K-YYVVALDYAENMLKMNLVAD--------DKVVGSFEALPFRD 108 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-C-CEEEEECCCHHHHHHHHhcc--------ceEEechhhCCCCC
Confidence 5689999999999999999986 4 57999999999999988641 35678888887543
No 82
>PRK14968 putative methyltransferase; Provisional
Probab=98.73 E-value=6.3e-08 Score=77.54 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=53.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC--eEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN--IALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n--I~f~~~Da~~L 187 (196)
++.+|||+|||+|.++..+++. . .+|+|+|+++++++.+++++...++.+ +.++.+|+.+.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~ 85 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--G-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP 85 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--c-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc
Confidence 4468999999999999999988 3 579999999999999999998888765 88988887553
No 83
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.72 E-value=2.4e-08 Score=90.69 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=54.9
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
..+|||+|||+|.+++.+|... ..|+|||+++++++.|++|++.++++|++|+.+|+.++.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~ 294 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA 294 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH
Confidence 3689999999999999999654 469999999999999999999999989999999997643
No 84
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.72 E-value=1.1e-09 Score=80.00 Aligned_cols=57 Identities=32% Similarity=0.500 Sum_probs=43.3
Q ss_pred EEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 129 LDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
||||||+|.++..+.+.+|. .+++|+|+|+.|++.|++++.+.+..+...+..+..+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~-~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 57 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPD-ARYTGVDISPSMLERARERLAELGNDNFERLRFDVLD 57 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-E-EEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS
T ss_pred CEeCccChHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCC
Confidence 79999999999999999888 8999999999999999999998776555555554444
No 85
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.72 E-value=4.1e-08 Score=80.84 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=52.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
...|||||||+|.++..+++..+. ..|+|+|+++++++.++++.. .++.++.+|+.+++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~ 94 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL 94 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC
Confidence 358999999999999999999987 789999999999999988754 378999999988764
No 86
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.71 E-value=3.5e-08 Score=85.12 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=54.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREG 191 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~ 191 (196)
++..|||||||+|.++..+++.. ..|+|||++++|++.+++++.. ..|++++.+|+.+++.+.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~~ 91 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLPE 91 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCchh
Confidence 45689999999999999999984 3699999999999999988754 468999999998876443
No 87
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.71 E-value=4.6e-08 Score=85.74 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=55.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L 187 (196)
+..+|||||||+|.+++.+++.+|+ .+++++|+ +++++.+++++++.++. +|+++.+|+.+.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~ 211 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE 211 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC
Confidence 3468999999999999999999998 89999997 89999999999998875 599999998753
No 88
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.71 E-value=5.4e-08 Score=80.40 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=56.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L~~ 189 (196)
+..+|||||||+|.++..+++..+ . .+|+|+|+++.+++.+++++...++ .++.++.+|+.+++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKT-GEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 346899999999999999999887 4 6899999999999999999876554 369999999987654
No 89
>PRK06202 hypothetical protein; Provisional
Probab=98.71 E-value=2.7e-08 Score=83.77 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=47.7
Q ss_pred CCCcEEEEeccccHHHHHHHHH----CCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARR----NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~----~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
....|||||||+|.++..|++. .+. .+|+|+|++++|++.|+++.... ++.+...|+..++.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~ 125 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLR-LEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVA 125 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCC-cEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccc
Confidence 4468999999999999999864 344 57999999999999998876433 45666666655543
No 90
>PRK08317 hypothetical protein; Provisional
Probab=98.70 E-value=9.4e-08 Score=78.41 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=53.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHC-CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
++..|||||||+|.++..++... |. .+|+|+|+++++++.++++.. ....++.+..+|+.+++.
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGLPF 83 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccCCC
Confidence 45689999999999999999987 66 689999999999999998833 233579999999877653
No 91
>PRK04266 fibrillarin; Provisional
Probab=98.70 E-value=5.4e-08 Score=83.14 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=52.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++.+|||+|||+|.++..+++..+. ..|+|+|++++|++.+.+++++. .||.++.+|+.+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~-g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~ 131 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEE-GVVYAVEFAPRPMRELLEVAEER--KNIIPILADARK 131 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCC
Confidence 4569999999999999999999875 68999999999999888887653 689999999864
No 92
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.69 E-value=4.9e-08 Score=88.27 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=54.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIRE 190 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e 190 (196)
.+.+|||||||+|.++..+++..+. .+|+|+|++++|++.|+++.. ..+++++.+|+.+++.+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~ 175 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFP 175 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCC
Confidence 3468999999999999999998877 689999999999999998764 34688999999887643
No 93
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.69 E-value=6.5e-08 Score=84.78 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=50.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~ 186 (196)
.+.+|||||||+|.+++.+++... .+|+|+|+++.|++.|++++..+++.+ +.+...|...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~ 220 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ 220 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc
Confidence 457999999999999999887643 479999999999999999999888754 6676666433
No 94
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.69 E-value=5.5e-08 Score=86.18 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=55.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC-CCCeEEEEcccccCcccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIALTLISRKNIIREG 191 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g-l~nI~f~~~Da~~L~~e~ 191 (196)
++..|||||||+|.++..+++... .|+|+|++++|++.+++++...+ .++++++.+|+.+++.+.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 456899999999999999998753 59999999999999999998766 468999999998765443
No 95
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.69 E-value=5.1e-08 Score=86.78 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=56.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
++..|||+|||+|.+++.++... ..++|+|++++|++.|++|++..++.++.++.+|+.+++.
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~ 244 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPL 244 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCc
Confidence 45689999999999999988763 4699999999999999999999998889999999998765
No 96
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.69 E-value=5.1e-08 Score=81.89 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=53.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.+.+|||+|||+|.+++.++.... ..|++||+++++++.+++|++.+++.|+.++.+|+.+.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~ 114 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF 114 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH
Confidence 346899999999999996544443 47999999999999999999999988999999998764
No 97
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.69 E-value=7.5e-08 Score=84.47 Aligned_cols=78 Identities=10% Similarity=0.216 Sum_probs=64.7
Q ss_pred hHHHHccC----CCCCcEEEEeccccHHHHHHHHHCCCC-----ccEEEEecCHHHHHHHHHHHHHhCCC-C--eEEEEc
Q 029244 115 DWSEVYKN----PTLPLMVDIGSGSGRFLIWLARRNPDS-----GNYLGLEIRQKLVKRAEFWVQELALS-N--IALTLI 182 (196)
Q Consensus 115 ~w~~~f~~----~~~~~ILDIGCGsG~~~i~LA~~~p~~-----~~ViGIDis~~ml~~A~~~~~~~gl~-n--I~f~~~ 182 (196)
.|.+.+.. .++..+||++||||.+++.+.+..+.. .+|+.+||+++|+..+++++.+.++. + +.++.+
T Consensus 87 lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 87 LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG 166 (296)
T ss_pred HHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC
Confidence 48776643 355799999999999999998876541 57999999999999999999887774 3 899999
Q ss_pred ccccCcccCC
Q 029244 183 SRKNIIREGS 192 (196)
Q Consensus 183 Da~~L~~e~~ 192 (196)
|+++||.+.-
T Consensus 167 dAE~LpFdd~ 176 (296)
T KOG1540|consen 167 DAEDLPFDDD 176 (296)
T ss_pred CcccCCCCCC
Confidence 9999997643
No 98
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.68 E-value=5.7e-08 Score=84.19 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=57.7
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++..|||+|||+|..++.+|...++...|+|+|+++++++.+++++++.++.||.++..|+..++
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~ 135 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG 135 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh
Confidence 45689999999999999999886532589999999999999999999999989999999987654
No 99
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.68 E-value=1e-07 Score=80.08 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=51.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
+..++||||||.|..++.||++. ..|+|+|+|+.+++.+++.+++.+++ |+....|+.+...
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~ 91 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDF 91 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhccc
Confidence 45699999999999999999996 56999999999999999999888886 9999999876544
No 100
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.67 E-value=4.6e-08 Score=86.95 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=47.9
Q ss_pred hHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC
Q 029244 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN 176 (196)
Q Consensus 115 ~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n 176 (196)
.|.+.+.. ++.+|||+|||||.+++..++.... .|+|+|+++.+++.|++|++.+++.+
T Consensus 153 ~~l~~~~~-~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 153 ELLEKYVK-PGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp HHHHHHSS-TTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred HHHHHhcc-CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCe
Confidence 44444433 4569999999999999999998754 79999999999999999999999865
No 101
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=8.2e-08 Score=88.94 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=57.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++..|||+|||+|..++.+++..+....|+|+|+++++++.+++++++.|+.||.++.+|+.+++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~ 314 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS 314 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc
Confidence 45689999999999999999875432589999999999999999999999988999999998764
No 102
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=6.6e-08 Score=89.28 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=58.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++..|||+|||+|..++.+++..+....|+|+|+++++++.++++++..|++||.++.+|+.+++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~ 316 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLL 316 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc
Confidence 45789999999999999999886432689999999999999999999999999999999998765
No 103
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.66 E-value=6.4e-08 Score=82.95 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=48.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLIS 183 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~D 183 (196)
.+.+|||||||+|.+++.+++..+. .|+|+|+++.+++.|+++++.+++ .++.+..+|
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~ 177 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVYLPQGD 177 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC
Confidence 4578999999999999988876543 599999999999999999998887 446665554
No 104
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=7.1e-08 Score=89.35 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=57.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++..|||+|||+|..++.++...++...|+|+|+++++++.+++++++.|+++|.++.+|+.+++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~ 301 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT 301 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh
Confidence 45689999999999999999886322689999999999999999999999988999999998765
No 105
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.65 E-value=1e-07 Score=85.10 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=52.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC-CCCeEEEEcccccCcc
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIALTLISRKNIIR 189 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g-l~nI~f~~~Da~~L~~ 189 (196)
..+.+|||||||+|.+++.++..++. .|+|||+|+.|+..++......+ -.+|+|+.+|+++++.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 35579999999999999999998765 59999999999976554433332 2479999999998875
No 106
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.65 E-value=7.4e-08 Score=81.72 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=48.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIRE 190 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e 190 (196)
....|||||||+|.++..+++.. ..|+|+|++++|++.|+++.. .+.++.+|+++++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLA 100 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCC
Confidence 34689999999999999998764 469999999999999987642 356888999887643
No 107
>PRK06922 hypothetical protein; Provisional
Probab=98.65 E-value=6.3e-08 Score=93.99 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=55.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++.+|||||||+|.++..+++.+|+ .+|+|+|+++.|++.|+++....+ .++.++++|+.+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~-~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp 480 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLS 480 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCc
Confidence 3468999999999999999999998 899999999999999999876555 36889999988765
No 108
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.65 E-value=8.9e-08 Score=82.92 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=54.2
Q ss_pred HccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 119 ~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
.+...++.+|||||||+|..+..+++.+ . .+|+|+|++++|++.|+++... ..++.+..+|+.+.+.
T Consensus 47 ~l~l~~~~~VLDiGcG~G~~a~~la~~~-~-~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~ 113 (263)
T PTZ00098 47 DIELNENSKVLDIGSGLGGGCKYINEKY-G-AHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDF 113 (263)
T ss_pred hCCCCCCCEEEEEcCCCChhhHHHHhhc-C-CEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCC
Confidence 3333355789999999999999999875 3 5799999999999999988653 2469999999887654
No 109
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.64 E-value=9.3e-08 Score=88.39 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=57.7
Q ss_pred CCCcEEEEeccccHHHHHHHHHC-CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++..|||+|||+|..++.+++.. +. ..|+|+|+++++++.+++++++.|+.+|.++.+|+.++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~ 314 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH 314 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc
Confidence 44689999999999999999876 45 689999999999999999999999988999999997753
No 110
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=7.2e-08 Score=85.96 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=51.9
Q ss_pred hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC
Q 029244 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN 176 (196)
Q Consensus 114 ~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n 176 (196)
..|.+.+.. ++..|||+|||+|.++|+.++.... .|+|+|+++-+++.|++|++.+++..
T Consensus 153 L~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~ 212 (300)
T COG2264 153 LEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVEL 212 (300)
T ss_pred HHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCch
Confidence 466665554 5678999999999999999999765 69999999999999999999998763
No 111
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.63 E-value=1.4e-07 Score=79.75 Aligned_cols=73 Identities=16% Similarity=0.037 Sum_probs=53.2
Q ss_pred hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHh------------CCCCeEEEE
Q 029244 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL------------ALSNIALTL 181 (196)
Q Consensus 114 ~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~------------gl~nI~f~~ 181 (196)
.+|...+..+++.+|||+|||.|..++.||.+. ..|+|||+|+.+++.+.++.... .-.+|++++
T Consensus 24 ~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (213)
T TIGR03840 24 VKHWPALGLPAGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC 100 (213)
T ss_pred HHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence 455444422245699999999999999999875 56999999999999864422100 113589999
Q ss_pred cccccCcc
Q 029244 182 ISRKNIIR 189 (196)
Q Consensus 182 ~Da~~L~~ 189 (196)
+|+.+++.
T Consensus 101 ~D~~~~~~ 108 (213)
T TIGR03840 101 GDFFALTA 108 (213)
T ss_pred ccCCCCCc
Confidence 99988764
No 112
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.62 E-value=1.3e-07 Score=80.90 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L 187 (196)
...|||||||+|..++++|...+....|+++|+++++++.|++++++.|+. +|+++.+|+.+.
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~ 132 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA 132 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Confidence 468999999999999999987653378999999999999999999999985 599999999765
No 113
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.62 E-value=6.3e-08 Score=81.57 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=55.4
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~ 186 (196)
.++|||||||.|.++..|++..-. ..++|||.|+++++.|+..++..+..| |+|.+.|+.+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~ 129 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD 129 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC
Confidence 359999999999999999988655 469999999999999999999999988 9999999875
No 114
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.7e-08 Score=81.19 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=58.9
Q ss_pred HccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccC
Q 029244 119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREG 191 (196)
Q Consensus 119 ~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~ 191 (196)
.+++..+.+++|||||.|.+.+..+-..++ .|+|+||++++++.+.+|+++..+ ++.++++|+.++...+
T Consensus 43 TygdiEgkkl~DLgcgcGmLs~a~sm~~~e--~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~ 112 (185)
T KOG3420|consen 43 TYGDIEGKKLKDLGCGCGMLSIAFSMPKNE--SVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKG 112 (185)
T ss_pred hhccccCcchhhhcCchhhhHHHhhcCCCc--eEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccC
Confidence 456667889999999999999777655444 699999999999999999999887 4799999998776543
No 115
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.60 E-value=1.8e-07 Score=72.31 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=53.2
Q ss_pred cEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
.++|||||.|.+++.+++.++. .+|+++|.++.+++.++++++.+++.|+.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999999999999987 7899999999999999999998888888888776653
No 116
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.60 E-value=1.2e-07 Score=81.34 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=53.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIRE 190 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e 190 (196)
+...|||||||+|.++..|++..+. |+|+|+++++++.++++... ..|++++.+|+.+++.+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP 90 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh
Confidence 4568999999999999999999754 99999999999999987643 46799999999887754
No 117
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.59 E-value=1.5e-07 Score=83.07 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=51.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~ 186 (196)
....|||+|||+|..+..|++..+ . .+|+|||+|++|++.+++++..... .+|.++++|+.+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~-~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQP-ARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccC-CeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 346899999999999999998875 3 5799999999999999999876431 247889999876
No 118
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3.6e-08 Score=92.95 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=57.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
....+||++||||.+++.+|+... .|+|||+++++++-|++|+..+|+.|.+|+++-++++..
T Consensus 383 ~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~ 445 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFP 445 (534)
T ss_pred CCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCccceeeeecchhhccc
Confidence 447999999999999999999874 599999999999999999999999999999997776543
No 119
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.57 E-value=2.3e-07 Score=64.41 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=50.2
Q ss_pred cEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
+|+|+|||+|.++..+++ .+. ..++++|+++++++.+++.....+..++.++..|+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPG-ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCC-CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc
Confidence 489999999999999998 445 689999999999999986555455567999999988765
No 120
>PLN03075 nicotianamine synthase; Provisional
Probab=98.55 E-value=2.6e-07 Score=82.25 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=52.8
Q ss_pred CCCcEEEEeccccHH--HHHHHHHCCCCccEEEEecCHHHHHHHHHHHHH-hCCCC-eEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRF--LIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-LALSN-IALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~--~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~-~gl~n-I~f~~~Da~~L~~ 189 (196)
...+|+|||||.|.+ .+.++..+|+ ..|+|+|+++++++.|++.+.. .++.+ |+|..+|+.++..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~-~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~ 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPT-TSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc
Confidence 457899999998844 3334456788 7999999999999999999965 77754 9999999987653
No 121
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.54 E-value=2.7e-07 Score=85.05 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=56.5
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++..|||+|||+|..++.+++..+. ..|+|+|+++++++.+++++++.|+. ++++.+|+.+++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~ 306 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPA 306 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccch
Confidence 4568999999999999999999876 68999999999999999999998875 789999997653
No 122
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.54 E-value=2.7e-07 Score=76.40 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=53.8
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
+..|||||||+|.++..+++..+ .++|+|+++++++.+++++...+..++++..+|+.+++.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 107 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE 107 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc
Confidence 56899999999999999988653 499999999999999999988776679999999877654
No 123
>PRK04457 spermidine synthase; Provisional
Probab=98.54 E-value=1.4e-07 Score=81.96 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=54.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L 187 (196)
....|||||||+|.++..+++..|+ ..|++||+++++++.|++++...+. ++++++.+|+.++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD-TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY 129 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence 4467999999999999999999998 8999999999999999998765443 5799999998654
No 124
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.52 E-value=3.3e-07 Score=74.98 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=54.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
++..|||+|||+|.++..+++..+....++|+|+++.+++.++++.. ...+++++.+|+.+++.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF 102 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC
Confidence 45799999999999999999988732479999999999999998875 33568999999987654
No 125
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.52 E-value=4.5e-07 Score=76.93 Aligned_cols=64 Identities=14% Similarity=0.070 Sum_probs=49.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHh------------CCCCeEEEEcccccCccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL------------ALSNIALTLISRKNIIRE 190 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~------------gl~nI~f~~~Da~~L~~e 190 (196)
++.+|||+|||.|..++.||.+. ..|+|||+++.+++.+.+..... .-.+|++.++|+.++..+
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 45699999999999999999874 56999999999999874321100 113589999999887544
No 126
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.51 E-value=3.7e-07 Score=75.77 Aligned_cols=61 Identities=15% Similarity=-0.043 Sum_probs=54.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~ 186 (196)
.+..+||++||+|.+++.++.+... .|++||+++++++.+++|++.+++. +++++.+|+.+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~ 110 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR 110 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence 3568999999999999999998754 6999999999999999999999885 69999999954
No 127
>PHA03411 putative methyltransferase; Provisional
Probab=98.50 E-value=3.1e-07 Score=81.15 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=50.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
..+|||+|||+|.+++.+++..+. .+|+|+|++++|++.++++. .++.++.+|+.++..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~ 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc
Confidence 358999999999999999988765 68999999999999998763 468899999987653
No 128
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.48 E-value=2.7e-07 Score=77.89 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=55.8
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L 187 (196)
...|||||||+|.-+++||+..|+..+|+.+|++++..+.|++++++.|+. +|+++.+|+.++
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV 109 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh
Confidence 368999999999999999998775489999999999999999999999985 599999998764
No 129
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.48 E-value=4.9e-07 Score=81.29 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=50.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHh-CCC-CeEEEE
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-ALS-NIALTL 181 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~-gl~-nI~f~~ 181 (196)
...++||||||+|.+...|+...+. ..|+|+||++.+++.|+++++.+ ++. .|.+..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~-~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~ 172 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYG-WRFVGSDIDPQALASAQAIISANPGLNGAIRLRL 172 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEE
Confidence 3468999999999999999988777 89999999999999999999998 775 477753
No 130
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.48 E-value=3.4e-07 Score=84.23 Aligned_cols=63 Identities=11% Similarity=0.005 Sum_probs=54.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC--CeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~--nI~f~~~Da~~L~ 188 (196)
.+.+|||+|||+|.+++..+.. +. ..|++||+++.+++.|++|++.++++ +++++.+|+.++.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga-~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l 284 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GC-SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL 284 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CC-CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH
Confidence 3468999999999999887654 33 47999999999999999999999985 7999999997753
No 131
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.45 E-value=8.2e-07 Score=79.50 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=50.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC-CCCeEEEEcccccCcc
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIALTLISRKNIIR 189 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g-l~nI~f~~~Da~~L~~ 189 (196)
.++.+|||||||+|.++..++..++. .|+|||+|+.|+..++......+ ..++.+..+|+++++.
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~ 185 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE 185 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC
Confidence 35579999999999999999988764 69999999999987544322222 2468889999888764
No 132
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.43 E-value=6.2e-07 Score=82.01 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=50.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|||||||+|.+++.+++..+ .+|+|+|+|+++++.|+++++ ++ ++++...|..++
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l 225 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL 225 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc
Confidence 456899999999999999998763 579999999999999999885 33 488888888765
No 133
>PLN02476 O-methyltransferase
Probab=98.42 E-value=6.4e-07 Score=79.12 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccCc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNII 188 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L~ 188 (196)
..+|||||||+|..++++|...|+...|+++|+++++++.|++++++.|+. +|+++.+|+.+..
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L 183 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESL 183 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 468999999999999999987664368999999999999999999999986 6999999987643
No 134
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.39 E-value=3.8e-07 Score=74.86 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=50.4
Q ss_pred cEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccCcc
Q 029244 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNIIR 189 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L~~ 189 (196)
.|+|+.||.|..++.+|+.+. +|++||+++..++.|+.|++-.|. +||.|+.+|..++..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~ 62 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLK 62 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGG
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHh
Confidence 699999999999999999974 599999999999999999999986 479999999887643
No 135
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.38 E-value=1.2e-06 Score=71.99 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=53.5
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCcc---------EEEEecCHHHHHHHHHHHHHhCCCC-eEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGN---------YLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~---------ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~L~~ 189 (196)
++..+||-.||+|.+++..|...++ .. ++|+|+++++++.|++|++..++.+ |.+.+.|+.+++.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~-~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~ 102 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGAN-IPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL 102 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTT-TSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhC-cccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc
Confidence 3468999999999999999988777 55 8999999999999999999998864 8999999999883
No 136
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.38 E-value=7.5e-07 Score=87.12 Aligned_cols=61 Identities=11% Similarity=-0.034 Sum_probs=54.1
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC--CeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~--nI~f~~~Da~~L 187 (196)
+.+|||||||+|.+++.++.... ..|++||+|+.+++.|++|++.+++. +++|+++|+.+.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~ 601 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW 601 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH
Confidence 46899999999999999998643 36999999999999999999999885 699999998654
No 137
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.37 E-value=9.7e-07 Score=74.47 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=51.7
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~L~~ 189 (196)
++..|+|+.||.|.|++.+|+..+. ..|+++|++|.+++..+++++.+++++ |..+.+|+.++..
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~-~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~ 166 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKA-KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP 166 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-S-SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred cceEEEEccCCccHHHHHHhhhcCc-cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence 4679999999999999999996655 689999999999999999999999876 8999999998765
No 138
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.37 E-value=3.2e-07 Score=80.64 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=46.8
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC--CC----eEEEEcccccCc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL--SN----IALTLISRKNII 188 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl--~n----I~f~~~Da~~L~ 188 (196)
.+|||+|||.|.++..||+.. +.|+|||++++|++.|++.....-. .+ ++|...|++.+.
T Consensus 91 ~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~ 156 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT 156 (282)
T ss_pred ceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc
Confidence 569999999999999999997 4599999999999999999432211 12 556666666543
No 139
>PHA03412 putative methyltransferase; Provisional
Probab=98.37 E-value=9.1e-07 Score=76.76 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=49.5
Q ss_pred CCCcEEEEeccccHHHHHHHHHC---CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN---PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~---p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
.+.+|||+|||+|.+++.++++. +. .+|+|||+++.+++.|+++. .++.++.+|+....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~-~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~ 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKP-REIVCVELNHTYYKLGKRIV-----PEATWINADALTTE 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCC-cEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhccc
Confidence 35699999999999999999874 34 58999999999999999774 35889999987543
No 140
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.36 E-value=1.1e-06 Score=78.14 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=59.8
Q ss_pred CCChhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 110 PAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 110 p~~l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
|..+.+..+.+...++..+||.+||.|..+..+++..+ + ..|+|+|++++|++.|++++.+ .++++++++|..++.
T Consensus 5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~-g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPK-GRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLK 81 (296)
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCC-CEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHH
Confidence 43333444444322446899999999999999999986 5 6899999999999999998865 467999999988753
No 141
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.35 E-value=1.4e-06 Score=80.36 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=53.5
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L 187 (196)
++..|||+|||+|..+..+++..+. ..|+|+|+++++++.+++++++.|+. .+.+..+|...+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~-~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQ-AQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP 301 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence 4578999999999999999998875 78999999999999999999999876 244466776544
No 142
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.34 E-value=1.7e-06 Score=80.15 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=47.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRK 185 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~ 185 (196)
+...|||||||+|.++..|++... .|+|||++++|++.+++.. ....|+.++.+|+.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~ 93 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESIN--GHYKNVKFMCADVT 93 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHh--ccCCceEEEEeccc
Confidence 346899999999999999999853 5999999999998876532 22467999999986
No 143
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.32 E-value=1.1e-06 Score=80.45 Aligned_cols=62 Identities=16% Similarity=-0.016 Sum_probs=56.2
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
..|||++||+|.+++.+|...+. ..|+++|+++++++.+++|++.++++++.++.+|+..+.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~-~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l 120 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV-EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL 120 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH
Confidence 47999999999999999988764 479999999999999999999999988999999987654
No 144
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.31 E-value=1.1e-06 Score=76.37 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=48.5
Q ss_pred CCcEEEEeccccH----HHHHHHHHCC-----CCccEEEEecCHHHHHHHHHHHHH----hC------------------
Q 029244 125 LPLMVDIGSGSGR----FLIWLARRNP-----DSGNYLGLEIRQKLVKRAEFWVQE----LA------------------ 173 (196)
Q Consensus 125 ~~~ILDIGCGsG~----~~i~LA~~~p-----~~~~ViGIDis~~ml~~A~~~~~~----~g------------------ 173 (196)
..+|+|+|||+|. +++.+++..+ + ..|+|+|+|++||+.|++.+-. .+
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~-~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPD-VKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCC-eEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 3589999999997 5666776654 3 5799999999999999985310 01
Q ss_pred ----C-CCeEEEEcccccCcc
Q 029244 174 ----L-SNIALTLISRKNIIR 189 (196)
Q Consensus 174 ----l-~nI~f~~~Da~~L~~ 189 (196)
+ .+|.|.+.|+.+.+.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~ 199 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP 199 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC
Confidence 1 258999999988654
No 145
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=4.2e-06 Score=73.15 Aligned_cols=67 Identities=30% Similarity=0.461 Sum_probs=59.2
Q ss_pred CCCCcEEEEeccccHHHHHHHH-HCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEcccccCccc
Q 029244 123 PTLPLMVDIGSGSGRFLIWLAR-RNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKNIIRE 190 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~-~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~L~~e 190 (196)
.++.+|+|.|+|+|.++..||. ..|. .+|+.+|+.++.++.|++|+.+.++.| |++..+|+.+...+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~-G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPE-GHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCC-ceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 3567999999999999999996 5566 799999999999999999999999877 99999998876544
No 146
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.31 E-value=8.8e-07 Score=74.91 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=48.9
Q ss_pred cCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCccc
Q 029244 121 KNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIRE 190 (196)
Q Consensus 121 ~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e 190 (196)
+.+.-..+||+|||.|.++..||.+.. .++++|+++.+++.|+++.. +..||+|.++|+.+..++
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~P~ 104 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLA--GLPHVEWIQADVPEFWPE 104 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT---S
T ss_pred CccccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCCCC
Confidence 443445899999999999999999973 59999999999999999986 457899999999876443
No 147
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.30 E-value=1.6e-06 Score=71.21 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=44.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++..|||||||+|.++..+++.. . ..++|||+++++++.+++ .+++++.+|+.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~-~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~ 66 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-Q-VRGYGIEIDQDGVLACVA-------RGVNVIQGDLDE 66 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-C-CcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhh
Confidence 34689999999999999998764 3 468999999999988864 247788888865
No 148
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.29 E-value=1.3e-06 Score=73.61 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=45.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++.+|||||||.|.++..|.+. .+ ...+|||++++.+..+.++ | +.++++|+++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~-v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~ 66 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQ-VDGYGVEIDPDNVAACVAR----G---VSVIQGDLDE 66 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cC-CeEEEEecCHHHHHHHHHc----C---CCEEECCHHH
Confidence 4679999999999999999875 45 7899999999998877764 3 6689999875
No 149
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.29 E-value=2.1e-06 Score=71.77 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=52.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
.+..|||||||+|.++..+++.. ..|+|+|+++++++.+++++...+. ++.+...|+.+++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~ 108 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELA 108 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhh
Confidence 45689999999999999998864 4699999999999999999877665 5888888887764
No 150
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.27 E-value=1.5e-06 Score=73.03 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=42.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++..|||||||+|.++..+++..+....|+|||+++ | ..+.+|+++++|+.+.
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~ 103 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDE 103 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCCh
Confidence 456899999999999999999864326899999998 2 1345688888988774
No 151
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.22 E-value=2e-06 Score=70.26 Aligned_cols=51 Identities=10% Similarity=0.209 Sum_probs=41.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHC-CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++..|||||||+|.++..+++.. +. .+|+|+|+++.+ ...++.++++|+.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~-~~v~~vDis~~~-----------~~~~i~~~~~d~~~ 83 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGK-GRVIAVDLQPMK-----------PIENVDFIRGDFTD 83 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCC-ceEEEEeccccc-----------cCCCceEEEeeCCC
Confidence 45789999999999999999886 44 679999999865 23467888888765
No 152
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.22 E-value=2.5e-06 Score=67.26 Aligned_cols=61 Identities=28% Similarity=0.379 Sum_probs=51.6
Q ss_pred CCCcEEEEeccccHHHHHHHH-----HCCCCccEEEEecCHHHHHHHHHHHHHhC--C-CCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLAR-----RNPDSGNYLGLEIRQKLVKRAEFWVQELA--L-SNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~-----~~p~~~~ViGIDis~~ml~~A~~~~~~~g--l-~nI~f~~~Da~~ 186 (196)
....|+|+|||.|.++..|+. . ++ .+|+|||.++..++.+.++.++.+ + .++.+..+++.+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~-~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS-PN-LRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC-CC-CeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 446899999999999999999 4 55 789999999999999999998877 4 467777776654
No 153
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.20 E-value=5.1e-06 Score=71.17 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=57.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEE-cccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTL-ISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~-~Da~~L~ 188 (196)
+..+|||||++.|..+++||...| + .+++.||+++++.+.|++++++.|+.+ |.++. +|+.+..
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~-g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l 125 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDD-GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCC-CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence 346899999999999999999998 6 799999999999999999999999977 88888 5876543
No 154
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.20 E-value=3.7e-06 Score=76.24 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=54.8
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEcccccCcc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKNIIR 189 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~L~~ 189 (196)
.+.|||+|||+|.+++.-|+.+.. +|+|||-|.-+ +.|.+.+..+++.+ |+++++.++++.-
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~--~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L 123 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGAR--KVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL 123 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcc--eEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec
Confidence 479999999999999999998854 89999988766 99999999999988 9999999997643
No 155
>PTZ00146 fibrillarin; Provisional
Probab=98.18 E-value=5.7e-06 Score=73.70 Aligned_cols=61 Identities=11% Similarity=0.112 Sum_probs=47.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|||||||+|.++..+|........|++||++++|++...+.+.+. .||.++..|+..
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~ 192 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY 192 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC
Confidence 4568999999999999999998743268999999998765555544322 588999999864
No 156
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.18 E-value=4.7e-06 Score=72.37 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=56.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccCc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNII 188 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L~ 188 (196)
...|||||+++|.-+++||...|....|+.+|++++..+.|++++++.|+. +|+++.+|+.+..
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 368999999999999999987654378999999999999999999999974 5999999987653
No 157
>PRK04148 hypothetical protein; Provisional
Probab=98.18 E-value=6e-06 Score=65.85 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=45.9
Q ss_pred ccCCCCCcEEEEeccccH-HHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 120 YKNPTLPLMVDIGSGSGR-FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 120 f~~~~~~~ILDIGCGsG~-~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++...+.+|||||||+|. ++..|++.. ..|+|+|+++++++.++++ .+.++.+|+.+-.
T Consensus 12 ~~~~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~ 71 (134)
T PRK04148 12 YEKGKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPN 71 (134)
T ss_pred cccccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCC
Confidence 333345689999999995 999999774 4699999999998887664 2678888887543
No 158
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=5.2e-06 Score=72.76 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=54.1
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREG 191 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~ 191 (196)
+..|||||+|.|.++..|++... .|++||+++.++...++... ...|++++.+|+..+...+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchh
Confidence 46899999999999999999974 49999999999999988865 3468999999999877664
No 159
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.13 E-value=8.4e-06 Score=70.91 Aligned_cols=61 Identities=23% Similarity=0.310 Sum_probs=52.2
Q ss_pred CCCcEEEEeccccHHHHHHHHH-CCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRK 185 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~-~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~ 185 (196)
++.+|||-|+|+|.++..||+. .|. ..|+..|++++.++.|+++++..|+. ||++...|+.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~-G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPT-GHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTT-SEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCC-eEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 5679999999999999999975 566 89999999999999999999999985 7999999985
No 160
>PRK00811 spermidine synthase; Provisional
Probab=98.13 E-value=8.7e-06 Score=71.43 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=52.7
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC-----CCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-----LSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g-----l~nI~f~~~Da~~L~ 188 (196)
...+|||||||.|.++..+.+..+. .+|++||+++++++.|++.+...+ -.+++++.+|+..+.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~-~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l 144 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSV-EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV 144 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCC-CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH
Confidence 4568999999999999999876444 579999999999999999886532 246999999987643
No 161
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.11 E-value=4.5e-06 Score=64.57 Aligned_cols=39 Identities=31% Similarity=0.548 Sum_probs=34.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHH
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKR 164 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~ 164 (196)
.....|||||||+|.++..|++.. .+|+|+|+++.+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh
Confidence 466799999999999999998774 369999999999987
No 162
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.08 E-value=1.9e-05 Score=67.94 Aligned_cols=78 Identities=10% Similarity=0.059 Sum_probs=56.4
Q ss_pred CCCCh-hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHH------H------hCCC
Q 029244 109 VPAPI-PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQ------E------LALS 175 (196)
Q Consensus 109 ~p~~l-~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~------~------~gl~ 175 (196)
.|... ..|......+.+.+||+.|||.|.-+..||.+. ..|+|+|+|+.+++.+.++.. + ..-.
T Consensus 27 ~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~ 103 (226)
T PRK13256 27 SPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGD 103 (226)
T ss_pred CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccC
Confidence 34443 344333332245699999999999999999985 469999999999999866320 0 1113
Q ss_pred CeEEEEcccccCcc
Q 029244 176 NIALTLISRKNIIR 189 (196)
Q Consensus 176 nI~f~~~Da~~L~~ 189 (196)
+|+++++|+.+++.
T Consensus 104 ~i~~~~gD~f~l~~ 117 (226)
T PRK13256 104 DIEIYVADIFNLPK 117 (226)
T ss_pred ceEEEEccCcCCCc
Confidence 69999999999864
No 163
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.07 E-value=3e-06 Score=73.79 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=53.1
Q ss_pred CCCChhhHHHHcc--CCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccc
Q 029244 109 VPAPIPDWSEVYK--NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRK 185 (196)
Q Consensus 109 ~p~~l~~w~~~f~--~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~ 185 (196)
.|..+.+|-.... ......++|+|||+|.-++.+|..+. +|+|+|++++||+.|++.....-. ....+...++.
T Consensus 16 RP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v 92 (261)
T KOG3010|consen 16 RPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMV 92 (261)
T ss_pred CCCCcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccc
Confidence 3444467855321 12234899999999988888888864 499999999999988875432111 12344444455
Q ss_pred cCcccCCcCC
Q 029244 186 NIIREGSCRS 195 (196)
Q Consensus 186 ~L~~e~~~~~ 195 (196)
+|..-.+.+|
T Consensus 93 ~L~g~e~SVD 102 (261)
T KOG3010|consen 93 DLLGGEESVD 102 (261)
T ss_pred cccCCCccee
Confidence 5553344443
No 164
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.07 E-value=1.5e-06 Score=75.64 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=36.5
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHH
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW 168 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~ 168 (196)
-.++||||||||-.+..|-.+.. .++|||||+.|+++|.++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEK 166 (287)
T ss_pred cceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhc
Confidence 35899999999999999988763 599999999999999876
No 165
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.97 E-value=2.3e-05 Score=67.34 Aligned_cols=39 Identities=15% Similarity=0.355 Sum_probs=34.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKR 164 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~ 164 (196)
.+..+||||||+|.|+..+++... ..|+|||++++|+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHH
Confidence 456899999999999999999743 479999999998876
No 166
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.97 E-value=1.5e-05 Score=72.45 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=58.9
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEcccccCccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKNIIRE 190 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~L~~e 190 (196)
.+..|||+-+|.|.|++.+|+.... .|+++||+|.+++..++|++.+++.+ |..+.+|+.++..+
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~ 253 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE 253 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc
Confidence 3679999999999999999998754 39999999999999999999999987 99999999887655
No 167
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.93 E-value=7.9e-06 Score=70.76 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=36.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW 168 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~ 168 (196)
....|||||||+|..+-.|.... +.++|||||+.|++.|.++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~ 91 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVER 91 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHh
Confidence 45689999999999998887664 5799999999999999974
No 168
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.88 E-value=2.1e-05 Score=66.88 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=52.8
Q ss_pred hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHH-h-----------CCCCeEEEE
Q 029244 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-L-----------ALSNIALTL 181 (196)
Q Consensus 114 ~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~-~-----------gl~nI~f~~ 181 (196)
..|..........+||+.|||.|.-+..||.+. ..|+|||+|+.+++.+.+.... . ...+|++++
T Consensus 27 ~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 27 VEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 444443333345689999999999999999984 5799999999999998543221 0 123589999
Q ss_pred cccccCccc
Q 029244 182 ISRKNIIRE 190 (196)
Q Consensus 182 ~Da~~L~~e 190 (196)
+|..+++.+
T Consensus 104 gDfF~l~~~ 112 (218)
T PF05724_consen 104 GDFFELPPE 112 (218)
T ss_dssp S-TTTGGGS
T ss_pred cccccCChh
Confidence 999887764
No 169
>PLN02366 spermidine synthase
Probab=97.88 E-value=4.7e-05 Score=68.05 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=52.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHh--CC--CCeEEEEcccccC
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL--AL--SNIALTLISRKNI 187 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~--gl--~nI~f~~~Da~~L 187 (196)
+...+||+||||.|.++..+++..+. .+|+.|||++++++.|++.+... ++ .+++++.+|+.+.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v-~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~ 157 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSV-EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF 157 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH
Confidence 34568999999999999999876444 57999999999999999987653 22 3599999997544
No 170
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.87 E-value=2.7e-05 Score=70.83 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=57.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEc-ccccCcccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLI-SRKNIIREG 191 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~-Da~~L~~e~ 191 (196)
.+..|||=-||||.+++...... .+++|.|++.+|++-|+.|++..++.+..++.. |+.+++..+
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRD 262 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCC
Confidence 44699999999999999999885 579999999999999999999999888877777 999988654
No 171
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.87 E-value=4.5e-05 Score=71.45 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=50.5
Q ss_pred CCcEEEEeccccHHHHHHHHH----CCCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccCccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARR----NPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNIIRE 190 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~----~p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L~~e 190 (196)
..+|+|||||+|-+....++. ... .+|++||.++.++...++++++++. ++|+++.+|++++..+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a-~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp 256 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGA-VKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP 256 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCE-SEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCC-eEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC
Confidence 468999999999998665443 233 5899999999999888888788888 4599999999988654
No 172
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.83 E-value=5e-05 Score=74.45 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=54.8
Q ss_pred CCcEEEEeccccHHHHHHHHHCC------------------------------------------CCccEEEEecCHHHH
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP------------------------------------------DSGNYLGLEIRQKLV 162 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p------------------------------------------~~~~ViGIDis~~ml 162 (196)
+..++|.+||+|.++|..|.+.. . ..++|+|++++++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~-~~i~G~Did~~av 269 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP-SKFYGSDIDPRVI 269 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC-ceEEEEECCHHHH
Confidence 46899999999999999987411 1 2599999999999
Q ss_pred HHHHHHHHHhCCCC-eEEEEcccccCcc
Q 029244 163 KRAEFWVQELALSN-IALTLISRKNIIR 189 (196)
Q Consensus 163 ~~A~~~~~~~gl~n-I~f~~~Da~~L~~ 189 (196)
+.|++|+...|+.+ |.|.++|+.+++.
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~ 297 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKN 297 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhccc
Confidence 99999999999865 9999999988753
No 173
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.83 E-value=2.2e-05 Score=66.74 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=57.5
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccCCc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREGSC 193 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~~~ 193 (196)
..+.|||+|+|.++...|+.. + +|++||.+|+..+.|.+|+.-.|..|++++.+|+.+...++-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A-~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~AD 98 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA-E--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENAD 98 (252)
T ss_pred hceeeccCCcchHHHHHHhhh-c--eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccc
Confidence 589999999999998888874 3 6999999999999999999888889999999999988776543
No 174
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.83 E-value=5.9e-05 Score=71.08 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=57.7
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++..|||+|+|.|.=+..+|....+...|+++|+++..++..++++++.|+.||.+...|...+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~ 176 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF 176 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh
Confidence 4578999999999999999998754368999999999999999999999999999999998765
No 175
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.83 E-value=5.5e-05 Score=63.01 Aligned_cols=59 Identities=34% Similarity=0.241 Sum_probs=54.3
Q ss_pred cEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+++|||+|-|-=++.||-..|+ .+|+.+|...+-+...+.-+.+.|++|++++++.+++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~-~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPD-LQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TT-SEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH
T ss_pred eEEecCCCCCChhHHHHHhCCC-CcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc
Confidence 7999999999999999999999 8999999999999999999999999999999999988
No 176
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.82 E-value=1.9e-05 Score=72.53 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=56.5
Q ss_pred CcEEEEeccccHHHHHHHHHCCCC-------------------------------c-------cEEEEecCHHHHHHHHH
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDS-------------------------------G-------NYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~-------------------------------~-------~ViGIDis~~ml~~A~~ 167 (196)
..++|-=||+|.++|..|.+.++- + .++|+|+++.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 479999999999999999887520 1 27799999999999999
Q ss_pred HHHHhCCCC-eEEEEcccccCccc
Q 029244 168 WVQELALSN-IALTLISRKNIIRE 190 (196)
Q Consensus 168 ~~~~~gl~n-I~f~~~Da~~L~~e 190 (196)
|++..|+.+ |+|.++|+..+..+
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~~ 296 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKEP 296 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCCCC
Confidence 999999865 99999999988765
No 177
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.80 E-value=8.2e-05 Score=64.61 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=50.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC----CCCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g----l~nI~f~~~Da~~ 186 (196)
...+|||||||+|.++..+.+..+. .+|+++|+++++++.+++.+...+ ..+++++.+|+.+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~-~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~ 137 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSV-EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK 137 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCc-ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH
Confidence 4459999999999999988877555 579999999999999999876532 2358888888754
No 178
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.78 E-value=8.9e-05 Score=66.58 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=47.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEcccccCcc
Q 029244 122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKNIIR 189 (196)
Q Consensus 122 ~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~L~~ 189 (196)
+-.+.+|||||||+|+++..|+...+. .|+|||.+..-+...+--.+-.|.++ +.++..-+++++.
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN 179 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc
Confidence 446789999999999999999999876 69999999887765443333334333 4555456666664
No 179
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.77 E-value=5.3e-05 Score=69.46 Aligned_cols=64 Identities=22% Similarity=0.150 Sum_probs=56.0
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
..|||+.||+|..++.++...+.-..|+++|+++++++.+++|++.+++.++.+++.|+..+..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~ 109 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR 109 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH
Confidence 4799999999999999999853214799999999999999999999998889999999886643
No 180
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.76 E-value=5.5e-05 Score=65.42 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=53.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREG 191 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~ 191 (196)
.+..|||||.|.|.++..|++.. .+|++||+++++++..+++.. ...|++++.+|+.++....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGG
T ss_pred CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHH
Confidence 45789999999999999999997 369999999999998888765 3468999999998876554
No 181
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.73 E-value=3.9e-05 Score=67.23 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=42.3
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHH
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE 171 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~ 171 (196)
...+|||||-+|.+++.+|+.+.. ..|+|+||++..|+.|+++++.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 468999999999999999999987 6899999999999999998763
No 182
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.71 E-value=1.9e-05 Score=68.27 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=55.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEcccccCc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKNII 188 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~L~ 188 (196)
.+.|+|.-||.|..++-.|.++|. |++|||++.-+.-|+.|++--|+.+ |+|+++|..++.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLA 156 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHH
Confidence 468999999999999999999876 9999999999999999999999865 999999987653
No 183
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.71 E-value=4.3e-05 Score=65.70 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=51.9
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeE-EEEcccccCc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIA-LTLISRKNII 188 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~-f~~~Da~~L~ 188 (196)
...+||||||+|...-.+- .-|. ..|+++|.+++|-+++.++++++...++. |+.++.++++
T Consensus 77 K~~vLEvgcGtG~Nfkfy~-~~p~-~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~ 139 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYP-WKPI-NSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP 139 (252)
T ss_pred ccceEEecccCCCCccccc-CCCC-ceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc
Confidence 3578999999998875443 2244 67999999999999999999998777777 9999999988
No 184
>PRK03612 spermidine synthase; Provisional
Probab=97.70 E-value=7.4e-05 Score=70.94 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=49.9
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHH--HHHh---CC--CCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW--VQEL---AL--SNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~--~~~~---gl--~nI~f~~~Da~~L 187 (196)
+..+|||||||+|..+..+++..+. .+|++||+++++++.++++ ..+. .+ ++++++.+|+.+.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v-~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~ 366 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDV-EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW 366 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCc-CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH
Confidence 4568999999999999999875443 4799999999999999984 2221 12 4699999998864
No 185
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.70 E-value=9.7e-05 Score=61.25 Aligned_cols=70 Identities=17% Similarity=0.100 Sum_probs=53.3
Q ss_pred hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEccccc
Q 029244 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKN 186 (196)
Q Consensus 114 ~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~ 186 (196)
.+|.... ...+..+|||.||+|.+++....+... .|+.||.+++.+...++|++..+..+ +.++..|+..
T Consensus 33 FniL~~~-~~~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~ 103 (183)
T PF03602_consen 33 FNILQPR-NLEGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK 103 (183)
T ss_dssp HHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH
T ss_pred HHHhccc-ccCCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH
Confidence 4555533 124679999999999999987777654 79999999999999999999999876 8999999653
No 186
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.68 E-value=0.00013 Score=61.72 Aligned_cols=62 Identities=18% Similarity=0.357 Sum_probs=51.3
Q ss_pred EEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEcccccCccc
Q 029244 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKNIIRE 190 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~L~~e 190 (196)
|+||||-=|.+.+.|.+.+.- ..++++|+++..++.|++++++.++.+ |.+..+|..+...+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~ 63 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKA-PKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP 63 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G
T ss_pred CceeccchhHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC
Confidence 689999999999999999876 689999999999999999999999765 99999996654443
No 187
>PRK01581 speE spermidine synthase; Validated
Probab=97.67 E-value=6.9e-05 Score=68.80 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=50.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHH--H---HHhC--CCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW--V---QELA--LSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~--~---~~~g--l~nI~f~~~Da~~L~ 188 (196)
...+||+||||.|..+..+.+..+. .+|++||++++|++.|++. + .+.. -.+++++.+|+.++.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v-~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL 220 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETV-LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL 220 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH
Confidence 4568999999999998888876555 5899999999999999962 1 1112 246999999988643
No 188
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=9.8e-05 Score=63.16 Aligned_cols=65 Identities=29% Similarity=0.182 Sum_probs=60.9
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIRE 190 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e 190 (196)
..+++|||+|.|-=++.||-.+|+ .+|+-||-..+-+..-+.-..+.+++|++++++.++++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~-~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~ 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPD-LKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccC-CcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc
Confidence 468999999999999999999999 78999999999999999999999999999999999988754
No 189
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.65 E-value=0.00017 Score=60.83 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=45.9
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRK 185 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~ 185 (196)
....|||||.|.|.+++.+++.+|+ .+++.+|+ |++++.+++ .++|+++.+|..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f 153 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE------ADRVEFVPGDFF 153 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH------TTTEEEEES-TT
T ss_pred CccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc------ccccccccccHH
Confidence 4468999999999999999999999 99999998 888888887 467999999986
No 190
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.64 E-value=0.00016 Score=61.19 Aligned_cols=62 Identities=23% Similarity=0.239 Sum_probs=44.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHH-------hCC--CCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-------LAL--SNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~-------~gl--~nI~f~~~Da~~ 186 (196)
+...++|||||.|...+..|...+- ...+|||+.+...+.|+...+. .|. ..+.+..+|..+
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~-~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGC-KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCC-cEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 4579999999999999999988765 4699999999999988765443 232 358888888754
No 191
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.63 E-value=9.8e-05 Score=60.24 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=41.9
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC---CCCeEEEEcccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA---LSNIALTLISRK 185 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g---l~nI~f~~~Da~ 185 (196)
.+..|||||||+|..++.+|+..+. ..|+..|..+ .++..+.|++.++ ..++.+...|-.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~-~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg 107 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGA-ARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWG 107 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TT
T ss_pred CCceEEEECCccchhHHHHHhccCC-ceEEEeccch-hhHHHHHHHHhccccccccccCcEEEec
Confidence 4579999999999999999998555 6899999999 9999999999876 245777766643
No 192
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00015 Score=61.16 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=50.8
Q ss_pred CCcEEEEeccccHHHHHHHHHC-CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
...++|||||+|..+..|++.. |+ ..++++||++.+++...+-++.++. ++..++.|...
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~-~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~ 104 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQ-ALYLATDINPEALEATLETARCNRV-HIDVVRTDLLS 104 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCC-ceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHh
Confidence 4689999999999999998765 55 7899999999999999998887764 47788888654
No 193
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.52 E-value=0.00026 Score=63.00 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=53.9
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccCc--ccCCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNII--REGSC 193 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L~--~e~~~ 193 (196)
+...|||||-|||+++..|-+... +|+++|+++.|+....++.+..... .+.++.+|....+ ..+.|
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~c 127 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGC 127 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCccccee
Confidence 346899999999999999999864 5999999999999999988644332 3899999987544 44444
No 194
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.47 E-value=0.00031 Score=64.46 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=53.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L~~ 189 (196)
.+.+|||+|||+|.+....|+.... +|++||-| +|.++|++.++.+++. .|.++.+-++++..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL 240 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL 240 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC
Confidence 4579999999999999888887654 79999965 6899999999888764 59999999998763
No 195
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.39 E-value=0.00061 Score=60.98 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=45.4
Q ss_pred hhhHHHHccC------CCCCcEEEEeccccHHHHHH-HHHCCCCccEEEEecCHHHHHHHHHHHHHh-CCC-CeEEEEcc
Q 029244 113 IPDWSEVYKN------PTLPLMVDIGSGSGRFLIWL-ARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-ALS-NIALTLIS 183 (196)
Q Consensus 113 l~~w~~~f~~------~~~~~ILDIGCGsG~~~i~L-A~~~p~~~~ViGIDis~~ml~~A~~~~~~~-gl~-nI~f~~~D 183 (196)
+..|...+.. +...++||||||.-.+=-.| ++.+ + .+++|.||+++.++.|+++++.+ ++. .|+++...
T Consensus 85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~-~-W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY-G-WSFVATDIDPKSLESARENVERNPNLESRIELRKQK 162 (299)
T ss_dssp HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc-C-CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence 4678664321 12357999999988764444 4554 5 89999999999999999999999 775 48887653
No 196
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.001 Score=57.22 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=68.8
Q ss_pred cccceeeEecccCCCCCCCCCCC---C--h-------hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCC-CCccEEEE
Q 029244 89 GELGHARIRQHVNPLSSSFTVPA---P--I-------PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNP-DSGNYLGL 155 (196)
Q Consensus 89 g~~~~~r~r~hvnP~~~~~~~p~---~--l-------~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGI 155 (196)
.+.-|+-.+.+.||..+.-+.+. . . .+....... ++..+||||+|+|+++.-+|.+.. ...+++||
T Consensus 36 dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~-pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GI 114 (237)
T KOG1661|consen 36 DRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQ-PGASFLDVGSGSGYLTACFARMVGATGGNVHGI 114 (237)
T ss_pred chhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhc-cCcceeecCCCccHHHHHHHHHhcCCCccccch
Confidence 55567777777888777322222 1 1 111111122 456899999999999999996643 21345999
Q ss_pred ecCHHHHHHHHHHHHHhC----------CCCeEEEEcccccCccc
Q 029244 156 EIRQKLVKRAEFWVQELA----------LSNIALTLISRKNIIRE 190 (196)
Q Consensus 156 Dis~~ml~~A~~~~~~~g----------l~nI~f~~~Da~~L~~e 190 (196)
|.-++.++.+++|+++.- -.++.++.+|......|
T Consensus 115 Eh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 115 EHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 999999999999998642 13578888998776554
No 197
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.27 E-value=0.00046 Score=62.31 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=43.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC-------C---CCeEEEEcccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-------L---SNIALTLISRK 185 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g-------l---~nI~f~~~Da~ 185 (196)
.+..|||||||.|.=+..+.+.... .++|+||+.+.|+.|+++..+.. . =...|+.+|..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f 131 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCF 131 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTC
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccc
Confidence 4579999999998888887776544 79999999999999999984321 1 12567788765
No 198
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.22 E-value=0.0021 Score=44.82 Aligned_cols=58 Identities=21% Similarity=0.387 Sum_probs=40.5
Q ss_pred EEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++|+|||+|... .++...+....++|+|+++.++..+.......+..++.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999977 4555544312699999999999995555443111116788888665
No 199
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.21 E-value=0.0015 Score=58.61 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=56.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCC-CccEEEEecCHHHHHHHHHHHHHhCCCCe-EEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQELALSNI-ALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~-~~~ViGIDis~~ml~~A~~~~~~~gl~nI-~f~~~Da~~L 187 (196)
...+||||.||.|...+......|. ...|.-.|.++..++.+++.+++.|+.+| +|.++|+.+.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 3458999999999999999888774 24799999999999999999999999996 9999998764
No 200
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.14 E-value=0.00064 Score=64.23 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=45.3
Q ss_pred CCcEEEEeccccHHHHHHHHHCCC-------CccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPD-------SGNYLGLEIRQKLVKRAEFWVQELALSNIALTLIS 183 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~-------~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~D 183 (196)
..+|||.|||+|.|++.++...+. ..+++|+|+++.++..++.++...+.-++.+...|
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d 97 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFN 97 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecc
Confidence 458999999999999999876631 14689999999999999999877652224444444
No 201
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.11 E-value=0.00083 Score=62.19 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=55.6
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC--CeEEEEcccccCcc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIALTLISRKNIIR 189 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~--nI~f~~~Da~~L~~ 189 (196)
+.+|||+.|=||.|++..|.-... .|++||+|..+++.|++|++-+|++ .+.|+++|+.++..
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~ 282 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLR 282 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHH
Confidence 578999999999999999987643 6999999999999999999999985 38999999987643
No 202
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.07 E-value=0.00071 Score=59.20 Aligned_cols=62 Identities=23% Similarity=0.216 Sum_probs=46.7
Q ss_pred CCCcEEEEeccccHHHHHHHHH-------CCCCccEEEEecCHHHHHHHHHHHHHhCCC--CeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARR-------NPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~-------~p~~~~ViGIDis~~ml~~A~~~~~~~gl~--nI~f~~~Da~~ 186 (196)
.+.+|+|.+||+|.|++.+.+. .+. ..++|+|+++.++..|+.++.-.++. +..+..+|...
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~-~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~ 116 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKE-INIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLE 116 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCC-EEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTT
T ss_pred ccceeechhhhHHHHHHHHHHhhccccccccc-ceeEeecCcHHHHHHHHhhhhhhcccccccccccccccc
Confidence 3457999999999999998874 255 68999999999999999988766643 35677888643
No 203
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.05 E-value=0.0014 Score=55.70 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=54.7
Q ss_pred HHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeE-EEEccccc
Q 029244 117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIA-LTLISRKN 186 (196)
Q Consensus 117 ~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~-f~~~Da~~ 186 (196)
...+++ ....|||||||||..+..+|+.+|. ....--|+++..+...+.++.+.++.|+. .+..|+..
T Consensus 19 ~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 19 KQYLPD-SGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred HHHhCc-cCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence 444543 2235999999999999999999999 89999999999998889999988888843 35555543
No 204
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.02 E-value=0.0019 Score=56.94 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=56.9
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++..|||+++|.|.=+..+|....+...|++.|++++.+...+.++++.|+.|+.....|...+
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~ 148 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKL 148 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHH
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccc
Confidence 5568999999999999999998874378999999999999999999999999999988887765
No 205
>PLN02823 spermine synthase
Probab=97.00 E-value=0.0019 Score=58.47 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=51.9
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC----CCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g----l~nI~f~~~Da~~L~ 188 (196)
...+||.||.|.|..+..+.+..+. .+|+.||+++++++.|++.+...+ -.+++++.+|+....
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~-~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L 170 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTV-EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL 170 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH
Confidence 3458999999999999988876555 579999999999999999875421 246999999987654
No 206
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.0031 Score=53.04 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=54.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~ 186 (196)
.+.++||+.+|+|.+++...-+... .++.||.+.+++...++|++..++ .++.++..|+..
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~ 104 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence 5689999999999999999888765 799999999999999999999885 468899999874
No 207
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.99 E-value=0.0027 Score=56.49 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=53.6
Q ss_pred hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC--CeEEEEcccccC
Q 029244 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIALTLISRKNI 187 (196)
Q Consensus 114 ~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~--nI~f~~~Da~~L 187 (196)
..|...+. .+.+|||+.|=+|.|++..+.-.. ..|+.||.|..+++.|++|++.+|++ +++|+..|+.+.
T Consensus 115 R~~v~~~~--~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~ 186 (286)
T PF10672_consen 115 RKWVRKYA--KGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF 186 (286)
T ss_dssp HHHHHHHC--TTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH
T ss_pred HHHHHHHc--CCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH
Confidence 34444443 457999999999999998776543 36999999999999999999999864 699999998764
No 208
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.89 E-value=0.0043 Score=55.70 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=59.3
Q ss_pred CCChhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 110 PAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 110 p~~l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
|..+.+..+.+...++..+||.=+|.|..+..+++..++ ..|+|+|.++++++.|+++++..+ .++++++++-.++.
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFF 82 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHH
Confidence 333333344443224468999999999999999998877 789999999999999999887543 46999998877653
No 209
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.83 E-value=0.0037 Score=54.23 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=56.6
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L 187 (196)
.++.||||.=+|.-++.+|...|++.+|+++|++++..+.+.+..+..|.. .|+++++++.+.
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALES 137 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhh
Confidence 368999999999999999999998799999999999999999999888875 499999987654
No 210
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0062 Score=55.37 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCC-CccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~-~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++..|||++++.|.=+..+|....+ +..|+++|+++..+...++|+++.|+.|+..+..|...++
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~ 221 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA 221 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccc
Confidence 5579999999999999999988754 1346999999999999999999999999999888876543
No 211
>PRK11524 putative methyltransferase; Provisional
Probab=96.80 E-value=0.0029 Score=55.38 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=45.0
Q ss_pred CCCChhhH-HHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHH
Q 029244 109 VPAPIPDW-SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE 171 (196)
Q Consensus 109 ~p~~l~~w-~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~ 171 (196)
.|+.+++. ...+.. .+..|||-.+|+|..+++..+.. .+++|+|++++-++.|+++++.
T Consensus 193 kP~~L~erlI~~~S~-~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 193 KPEALLKRIILASSN-PGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred ChHHHHHHHHHHhCC-CCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHh
Confidence 34444443 333433 66799999999999998777664 3699999999999999999864
No 212
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.75 E-value=0.0016 Score=52.87 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=39.2
Q ss_pred CCCCChhhH-HHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 108 TVPAPIPDW-SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 108 ~~p~~l~~w-~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
+.|..+++. ...+.+ ++..|||.-+|+|..+++..+.+ .+.+|+|++++.++.|++
T Consensus 175 ~kP~~l~~~lI~~~t~-~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKASTN-PGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhc-cceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 445555444 334444 56799999999999998877775 359999999999999875
No 213
>PRK13699 putative methylase; Provisional
Probab=96.71 E-value=0.0047 Score=52.79 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=47.4
Q ss_pred CCCCChhhHHH-HccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC
Q 029244 108 TVPAPIPDWSE-VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA 173 (196)
Q Consensus 108 ~~p~~l~~w~~-~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g 173 (196)
+.|..+..+.. .+.. ++..|||--||+|..+++..+.. .+++|+|++++-++.|.+++++..
T Consensus 147 ~kP~~l~~~~i~~~s~-~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 147 EKPVTSLQPLIESFTH-PNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCcHHHHHHHHHHhCC-CCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHHHH
Confidence 34555555433 3443 56799999999999998877764 369999999999999999987643
No 214
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.69 E-value=0.0012 Score=56.21 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=55.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccCCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREGSC 193 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~~~ 193 (196)
.+.+|||+|+|+|-.+|.-|+.... .|++.|+.+-.+...+.|++.+|. +|.|...|+-. ..+..+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~~~~~D 144 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-SPPAFD 144 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-CCccee
Confidence 4579999999999999999988754 799999999999999999998885 58998888766 444443
No 215
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.68 E-value=0.0062 Score=54.90 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=46.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHC----CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEE--EEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN----PDSGNYLGLEIRQKLVKRAEFWVQELALSNIAL--TLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~----p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f--~~~Da~~ 186 (196)
....++|+|||+|.=+..|-... .. ..+++||||.++++.+.+++....+.+|.+ +++|..+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~-~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKS-VDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCC-ceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 34579999999999765543322 23 579999999999999999998555566555 7887654
No 216
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.67 E-value=0.00078 Score=54.44 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=30.7
Q ss_pred CCCcEEEEeccccHHHHHHHHHC-CCCccEEEEecCHH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQK 160 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis~~ 160 (196)
+...+|||||++|.++-.+.+.. +. ..|+|||+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~-~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPA-GRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTE-EEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeeccccc-ceEEEEecccc
Confidence 45799999999999999999887 44 68999999887
No 217
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.66 E-value=0.0048 Score=54.06 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=40.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE 171 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~ 171 (196)
....|||+|||.|.-+.+....++....+++||.|+.|++.++.-++.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 345899999999998888777776436799999999999999987664
No 218
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.62 E-value=0.0015 Score=57.12 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=39.0
Q ss_pred cEEEEeccccHHHHHHHHHCCC-CccEEEEecCHHHHHHHHHHHHH
Q 029244 127 LMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQE 171 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p~-~~~ViGIDis~~ml~~A~~~~~~ 171 (196)
.|||||||.|+....+-+..|+ ...|++.|.|+.+++..+++...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~ 119 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY 119 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc
Confidence 7999999999999999887654 15799999999999999988653
No 219
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.55 E-value=0.0047 Score=58.45 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=50.4
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L 187 (196)
...|||||+|||.++...++...+ .|+++|.-..|.+.|++-..++|.. +|+++.---.++
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 357999999999999988888877 5999999999999999999999874 577765443333
No 220
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.017 Score=51.62 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=55.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHC-CCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~ 186 (196)
++.+|+|-|+|+|.++.++|+.. |. .+++-.|+.....+.|.+..++.++. |+++..-|+..
T Consensus 105 PGsvV~EsGTGSGSlShaiaraV~pt-Ghl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 105 PGSVVLESGTGSGSLSHAIARAVAPT-GHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG 168 (314)
T ss_pred CCCEEEecCCCcchHHHHHHHhhCcC-cceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence 56799999999999999999876 55 78999999999999999999999984 79998888753
No 221
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.39 E-value=0.0025 Score=49.39 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=34.2
Q ss_pred hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHH
Q 029244 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKL 161 (196)
Q Consensus 114 ~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~m 161 (196)
.-|...+...+.+.++|||||+|-+.--|.... ..-+|+|.+..-
T Consensus 48 ~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EG---y~G~GiD~R~Rk 92 (112)
T PF07757_consen 48 ELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEG---YPGWGIDARRRK 92 (112)
T ss_pred HHHhcccCCCCCCceEEccCCchHHHHHHHhCC---CCcccccccccc
Confidence 346666554455789999999999998888775 458999976543
No 222
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.39 E-value=0.013 Score=51.36 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=50.2
Q ss_pred HHHHccC-CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 029244 116 WSEVYKN-PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRK 185 (196)
Q Consensus 116 w~~~f~~-~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~ 185 (196)
|...|.. +...+|+|||||.==+++.+-...++ ..++|+||+..+++....-+...+. +..+...|..
T Consensus 96 Y~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~-a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~ 164 (251)
T PF07091_consen 96 YDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPG-ATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLL 164 (251)
T ss_dssp HHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TT
T ss_pred HHHHHhcCCCCchhhhhhccCCceehhhcccCCC-cEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeee
Confidence 3445554 23568999999999999988888777 8999999999999999999888875 4666666754
No 223
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.20 E-value=0.007 Score=53.38 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=34.3
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
...+||||.|.|.++..|+..+.+ |++.|+|+.|...-++
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSK 134 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHh
Confidence 357999999999999999999865 9999999999654443
No 224
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.04 E-value=0.0078 Score=52.11 Aligned_cols=47 Identities=17% Similarity=0.095 Sum_probs=37.7
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCC-ccEEEEecCHHHHHHHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDS-GNYLGLEIRQKLVKRAEFWVQ 170 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~-~~ViGIDis~~ml~~A~~~~~ 170 (196)
..-.+.|-+||+|+++..++-.+++. .+|+|-||++++++.|++|+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 34589999999999999998777542 469999999999999999973
No 225
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.02 E-value=0.011 Score=53.92 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=47.5
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC-CC-----CeEEEEcccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-LS-----NIALTLISRK 185 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g-l~-----nI~f~~~Da~ 185 (196)
....++|||||.|.=++..-+..-. .++|+||.+.-|+.|+++-+... .. .+.|+.+|..
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred cccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 4568999999999998888766543 69999999999999999877532 11 2788888864
No 226
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.85 E-value=0.015 Score=48.74 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=47.6
Q ss_pred CCCcEEEEeccccHHHHHHHHH-CCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~-~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
.+.-|||+|-|+|-++-++-.. .++ ..+++||.+++.+..-.+.. +.++++.+|+.++.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~-~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~ 107 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRP-ESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLR 107 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCc-cceEEEEeCHHHHHHHHHhC-----CCccccccchhhHH
Confidence 3457999999999999887654 455 68999999999998777653 45779999988775
No 227
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.84 E-value=0.023 Score=49.02 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=51.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC----CCCeEEEEcccccCcc
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIALTLISRKNIIR 189 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g----l~nI~f~~~Da~~L~~ 189 (196)
+...+||=||-|.|..+..+.+..+. ..|+.|||++++++.|++-+.... -.+++++.+|+..+..
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~-~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~ 144 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPV-ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK 144 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCc-ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH
Confidence 35679999999999999999876655 589999999999999999876532 2469999999876543
No 228
>PHA01634 hypothetical protein
Probab=95.66 E-value=0.024 Score=45.67 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=43.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA 173 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g 173 (196)
..+..|+|||.+-|.-++.++.+... .|+++|.++...+..+++++.+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhhhe
Confidence 35689999999999999999988765 79999999999999999887654
No 229
>PRK10742 putative methyltransferase; Provisional
Probab=95.57 E-value=0.029 Score=49.19 Aligned_cols=61 Identities=23% Similarity=0.140 Sum_probs=52.0
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHh------C--C-CCeEEEEcccccCc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL------A--L-SNIALTLISRKNII 188 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~------g--l-~nI~f~~~Da~~L~ 188 (196)
.+.|||+-+|+|..++.+|... ..|++||.++.+....+.+++.. + + .+++++.+|..++.
T Consensus 89 ~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L 158 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_pred CCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence 4689999999999999999884 46999999999999999998874 2 2 56999999987654
No 230
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.40 E-value=0.016 Score=52.14 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=53.0
Q ss_pred CCChhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 110 PAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 110 p~~l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
|..+.+-...+...++..+||.=-|.|..+..+.+..|+ ..|+|+|.++++++.|++++... -+++.++.++..++.
T Consensus 6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLD 82 (310)
T ss_dssp -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHH
T ss_pred cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHH
Confidence 443333334343334568999999999999999999998 89999999999999999887644 246999998876654
No 231
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.36 E-value=0.045 Score=47.27 Aligned_cols=59 Identities=25% Similarity=0.271 Sum_probs=52.8
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRK 185 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~ 185 (196)
..++||||-=|++.+.|-+.++- ..+++.|+++..++.|.+++.+.++. .++...+|..
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~-~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl 77 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPA-STAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL 77 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCc-ceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc
Confidence 34999999999999999999998 78999999999999999999998875 4777778764
No 232
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.16 E-value=0.012 Score=43.33 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=16.3
Q ss_pred EEEeccccHHHHHHHHHCCCCc--cEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccC
Q 029244 129 VDIGSGSGRFLIWLARRNPDSG--NYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNI 187 (196)
Q Consensus 129 LDIGCGsG~~~i~LA~~~p~~~--~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L 187 (196)
||||+..|..++.+++..++.. +++++|..+. .+.+++.+++.++. +++++.+|..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~ 61 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDF 61 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHH
Confidence 6999999999999988765412 5999999996 44455555555553 699999997654
No 233
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.06 E-value=0.049 Score=48.34 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=53.7
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhC----CCCeEEEEcccccCcc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIALTLISRKNIIR 189 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~g----l~nI~f~~~Da~~L~~ 189 (196)
++||-||-|.|..+..+.+..+. .+++.|||++++++.+++.+.... -..++++..|..++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~v-e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~ 144 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPV-ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR 144 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCc-ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH
Confidence 59999999999999999998877 789999999999999999876543 2458888899876543
No 234
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.04 E-value=0.12 Score=48.55 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=81.3
Q ss_pred ccccchhhHHHHhhhcCCCCccccccccc-eeeEecccCCCCCCCCCCC-Ch--hhHHH------HccCCCCCcEEEEec
Q 029244 64 KEIRSTDLVALEFAELNLPVSNKITGELG-HARIRQHVNPLSSSFTVPA-PI--PDWSE------VYKNPTLPLMVDIGS 133 (196)
Q Consensus 64 ~~~~~~~~v~~~~~~~~L~~~~~i~g~~~-~~r~r~hvnP~~~~~~~p~-~l--~~w~~------~f~~~~~~~ILDIGC 133 (196)
|..+...++.+-...+++ +++....+ ..++..-+-|+...-.+-+ .+ ..... +-++ ++.+|||+++
T Consensus 175 k~~rrd~~~~L~nrgv~~---~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~sS~Lpv~aL~Pq-~gERIlDmcA 250 (460)
T KOG1122|consen 175 KTRRRDLAVELSNRGVNL---DPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNASSFLPVMALDPQ-PGERILDMCA 250 (460)
T ss_pred chhhhhHHHHHHhcccCc---ccccccccceEEEecCccccCCchhhcccceeeccCcccceeeecCCC-CCCeecchhc
Confidence 555555566666666777 56653222 4444444444443211111 11 00011 1122 5679999999
Q ss_pred cccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 134 GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 134 GsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
..|.=+..+|....+...|+|.|.+...+.....++.+.|.+|......|..+++
T Consensus 251 APGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~ 305 (460)
T KOG1122|consen 251 APGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP 305 (460)
T ss_pred CCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc
Confidence 9999999999877665789999999999999999999999999888888887654
No 235
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.91 E-value=0.061 Score=47.71 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=40.1
Q ss_pred CcEEEEeccccH-HHHHHHHHC-CCCccEEEEecCHHHHHHHHHHHH-HhCCC-CeEEEEcccccCcc
Q 029244 126 PLMVDIGSGSGR-FLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQ-ELALS-NIALTLISRKNIIR 189 (196)
Q Consensus 126 ~~ILDIGCGsG~-~~i~LA~~~-p~~~~ViGIDis~~ml~~A~~~~~-~~gl~-nI~f~~~Da~~L~~ 189 (196)
.+|+=||||.== -++.|++.+ ++ +.|+++|+++++++.+++-+. ..++. .+.|+.+|+.+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~-~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~ 188 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPG-ARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY 188 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT---EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc
Confidence 489999999654 456667654 45 689999999999999998877 44554 49999999887653
No 236
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.61 E-value=0.059 Score=45.97 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=42.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++..|+|||+-.|.++..+++.......|+|||+.+-- .+.+|.++++|+.+-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~ 97 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDE 97 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCc
Confidence 45799999999999999999987653569999997742 235688888887643
No 237
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.05 Score=45.06 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=50.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L 187 (196)
+..+.+|||+|.|.+.+..|+..- .+-+|+|+++=.+.+++-.+-+.|.. ...|..-|+...
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 445899999999999999988762 36899999999999999888777764 477777776544
No 238
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=94.32 E-value=0.052 Score=47.87 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=51.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccCCcCC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREGSCRS 195 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~~~~~ 195 (196)
..|.++|||||-|.+...|-..+-+ .++-+|.|..|++.++.- +..++. +..+.+|-+.|+.+.-..|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~-qdp~i~-~~~~v~DEE~Ldf~ens~D 139 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDA-QDPSIE-TSYFVGDEEFLDFKENSVD 139 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhcc-CCCceE-EEEEecchhcccccccchh
Confidence 4578999999999999999877644 699999999999887753 222332 5677788888877654444
No 239
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=94.23 E-value=0.11 Score=47.71 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=38.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
.+..+|||||++|.++-.|.+.. ..|+|||..+ |- .++. ...+|..+.+|.....
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l~----~~L~--~~~~V~h~~~d~fr~~ 265 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-MA----QSLM--DTGQVEHLRADGFKFR 265 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-cC----Hhhh--CCCCEEEEeccCcccC
Confidence 45799999999999999999885 5799999554 21 1111 2235777666655443
No 240
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.19 E-value=0.22 Score=45.01 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=57.9
Q ss_pred hHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 115 ~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
+-.+.+...++...+|.=-|.|..+-.+-++.++..+++|+|.++.+++.|++.....+ +++.+++++..++.
T Consensus 14 E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~ 86 (314)
T COG0275 14 EVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLA 86 (314)
T ss_pred HHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHH
Confidence 33344433345799999999999999999998863569999999999999999988766 57999988765543
No 241
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.12 E-value=0.065 Score=46.80 Aligned_cols=55 Identities=20% Similarity=0.119 Sum_probs=42.6
Q ss_pred cEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
+++|+.||.|.+...+....-+ .++++|+++.+++.-+.|.. +. ++.+|+.++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~ 56 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDE 56 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCch
Confidence 5899999999999888876533 69999999999988887753 11 55677776654
No 242
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.65 E-value=0.024 Score=48.32 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=40.5
Q ss_pred CCCCChhhHHHHccCCCCCcEEEEeccccHHHHHHHHH---C-CCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEc
Q 029244 108 TVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARR---N-PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLI 182 (196)
Q Consensus 108 ~~p~~l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~---~-p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~ 182 (196)
+.|..+....+.+-......|+|+|.-.|.-++.+|.+ . ++ .+|+||||+.......... ...+ .+|+++++
T Consensus 16 q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~-~~VigiDIdir~~~~~a~e--~hp~~~rI~~i~G 92 (206)
T PF04989_consen 16 QYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGK-GKVIGIDIDIRPHNRKAIE--SHPMSPRITFIQG 92 (206)
T ss_dssp S-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT----EEEEEES-GTT--S-GGG--G----TTEEEEES
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCC-ceEEEEeCCcchhchHHHh--hccccCceEEEEC
Confidence 34554433334332223468999999999999988754 3 56 7899999965544322221 1111 46999999
Q ss_pred ccccC
Q 029244 183 SRKNI 187 (196)
Q Consensus 183 Da~~L 187 (196)
|..+.
T Consensus 93 ds~d~ 97 (206)
T PF04989_consen 93 DSIDP 97 (206)
T ss_dssp -SSST
T ss_pred CCCCH
Confidence 98654
No 243
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.13 E-value=0.22 Score=42.75 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=44.2
Q ss_pred cEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
+++||.||-|.+...|-+..-+ .+.++|+++.+++.-+.|.. ....+|+.++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~--~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~ 55 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFE--VVWAVEIDPDACETYKANFP-------EVICGDITEIDP 55 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEE--EEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHH
T ss_pred cEEEEccCccHHHHHHHhcCcE--EEEEeecCHHHHHhhhhccc-------cccccccccccc
Confidence 5899999999999999887644 69999999999988888763 677788887653
No 244
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=92.86 E-value=0.017 Score=50.21 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=35.5
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHH
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW 168 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~ 168 (196)
..++||||.|.|.++..|+..+.+ |++.|.|..|....+++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRLKKK 153 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHHhhc
Confidence 368999999999999999988744 99999999998776653
No 245
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=92.50 E-value=0.14 Score=44.16 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=42.1
Q ss_pred CCcEEEEeccccHHHHHH-HHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCccc
Q 029244 125 LPLMVDIGSGSGRFLIWL-ARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIRE 190 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~L-A~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e 190 (196)
....||.|+|-|+++-.+ .+.+ + .|--||..++.++.|++.+...+..-..+++.-++++.++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f-~--~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~ 119 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVF-D--EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE 119 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC--S--EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----
T ss_pred cceEEecccccchhHHHHHHHhc-C--EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC
Confidence 468999999999999866 4444 3 5999999999999999776542223367888888877654
No 246
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.36 E-value=0.18 Score=44.15 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=43.0
Q ss_pred CCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcc
Q 029244 122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIR 189 (196)
Q Consensus 122 ~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~ 189 (196)
+.++..+||||+-||.|+--+.+.... .|+|||..-..+..--++ +..-+.+...|+..+..
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~----d~rV~~~E~tN~r~l~~ 138 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRN----DPRVIVLERTNVRYLTP 138 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhc----CCcEEEEecCChhhCCH
Confidence 356789999999999999998887654 799999998777654432 21113444455554443
No 247
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=92.02 E-value=0.88 Score=39.52 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=46.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+||-||.++|.....++.....+..|+|||.++...+....-+++. +||-.+-.|+..-
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P 134 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHP 134 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSG
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCCh
Confidence 4579999999999999999998762278999999996655554444332 5888888888743
No 248
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.87 E-value=0.28 Score=43.10 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=45.9
Q ss_pred CCCcEEEEeccccHHHHHHHHHC-----CCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccCccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN-----PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNIIRE 190 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~-----p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L~~e 190 (196)
+...++|+|||.|.++.++++.. +. ..++.||...... ++..++..... ..++=+..|+.++...
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~-~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l~ 88 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSN-SRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDLS 88 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCC-ccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccchh
Confidence 34589999999999999999987 44 5799999865443 44444443321 2467778888877543
No 249
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.65 E-value=0.2 Score=42.97 Aligned_cols=46 Identities=26% Similarity=0.262 Sum_probs=35.4
Q ss_pred CcEEEEeccccHHHHHHHHHCCC-------CccEEEEecCHHHHHHHHHHHHH
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPD-------SGNYLGLEIRQKLVKRAEFWVQE 171 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~-------~~~ViGIDis~~ml~~A~~~~~~ 171 (196)
..|+|+|.|+|.++..+.....+ ..+++-||+|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 68999999999999888765433 14799999999998888777654
No 250
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=91.65 E-value=0.063 Score=47.29 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=49.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC--CCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL--SNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl--~nI~f~~~Da~~L 187 (196)
...+|||-|.|-|+.++...++... .|+-||.++..++.|.-|-=..++ .+|+++.+|+.++
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~ 197 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV 197 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH
Confidence 3568999999999999999998642 799999999999998776322222 2589999997654
No 251
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.60 E-value=0.27 Score=46.00 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=36.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW 168 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~ 168 (196)
+-+.++|+|.|.|.++..|+-.+. ..|.|||-+....+.|++-
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHHH
Confidence 346899999999999999998886 4799999998888877654
No 252
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=91.52 E-value=0.35 Score=44.55 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=51.1
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC--eEEEEcccccCc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN--IALTLISRKNII 188 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n--I~f~~~Da~~L~ 188 (196)
-.|||-=+|+|.=++.+++..++...|+.-|+++++++..++|++.+++.+ +++...|+..+.
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll 115 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL 115 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh
Confidence 489999999999999999995432579999999999999999999999875 889999987765
No 253
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.32 E-value=0.098 Score=49.34 Aligned_cols=62 Identities=13% Similarity=0.195 Sum_probs=54.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC--CeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~--nI~f~~~Da~~L~ 188 (196)
.+..|.|+.||.|-|++.++++. .+|++-|++++++++.+.++..+.++ +|..+..|+.++.
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred CcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 45689999999999999999986 67999999999999999999887764 4899999988765
No 254
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=91.25 E-value=0.16 Score=42.66 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=29.6
Q ss_pred CCcEEEEeccccHHHHHHH----HH----CC-CCccEEEEecCHHHHHHHHH
Q 029244 125 LPLMVDIGSGSGRFLIWLA----RR----NP-DSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA----~~----~p-~~~~ViGIDis~~ml~~A~~ 167 (196)
.-+|+..||++|.=...|| +. .+ + ..|+|.||++.+++.|++
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~-~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWD-FRILATDISPSALEKARA 82 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-S-EEEEEEES-HHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCc-eEEEEEECCHHHHHHHHh
Confidence 3589999999997554443 41 22 3 589999999999999976
No 255
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.67 E-value=0.47 Score=43.93 Aligned_cols=65 Identities=15% Similarity=-0.018 Sum_probs=55.5
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIRE 190 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e 190 (196)
...|+|-=+|+|.=+|..|...+. ..|+.=||++++++.+++|++.+...+...+..|+..+..+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~ 117 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE 117 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh
Confidence 468999999999999999999887 58999999999999999999988555677777887766544
No 256
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=90.51 E-value=0.44 Score=42.09 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=33.8
Q ss_pred CCcEEEEeccccH----HHHHHHHHCCC----CccEEEEecCHHHHHHHHH
Q 029244 125 LPLMVDIGSGSGR----FLIWLARRNPD----SGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 125 ~~~ILDIGCGsG~----~~i~LA~~~p~----~~~ViGIDis~~ml~~A~~ 167 (196)
.-+|+-.||++|. +++.|.+..+. ...|+|.||+..+|+.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 4589999999996 44555566641 2789999999999999975
No 257
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=90.29 E-value=0.77 Score=35.26 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=32.3
Q ss_pred EEecccc--HHHHHHH--HHCCCCccEEEEecCHHHHHHHHHH--HHHhCC-CCeEEEEcc
Q 029244 130 DIGSGSG--RFLIWLA--RRNPDSGNYLGLEIRQKLVKRAEFW--VQELAL-SNIALTLIS 183 (196)
Q Consensus 130 DIGCGsG--~~~i~LA--~~~p~~~~ViGIDis~~ml~~A~~~--~~~~gl-~nI~f~~~D 183 (196)
|||+..| .....+. ...+. ..|+++|.++..++..+++ +.-++. ..+++....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~-~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPG-GRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS---SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCC-CEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence 8999999 6666554 45566 7899999999999999998 554432 125555433
No 258
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=89.78 E-value=0.28 Score=42.29 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=27.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccCCcCC
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREGSCRS 195 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~~~~~ 195 (196)
++.-.|.|+|||.+.++..+... ..|.-.|+-.. |=.++.+|+.++|.++...|
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAP---------------NPRVTACDIANVPLEDESVD 124 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S-------EEEEESS-S---------------STTEEES-TTS-S--TT-EE
T ss_pred CCCEEEEECCCchHHHHHhcccC----ceEEEeeccCC---------------CCCEEEecCccCcCCCCcee
Confidence 34569999999999888554322 46888887542 22355688888887765544
No 259
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=89.66 E-value=2.5 Score=37.06 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=44.7
Q ss_pred hHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccC
Q 029244 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREG 191 (196)
Q Consensus 115 ~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~ 191 (196)
.|.....+-.+..||=||=+ =..++++|...+. .+|+-+||++.+++..++.+++.|++ |+.+..|+.+-.++.
T Consensus 35 ~~~~~~gdL~gk~il~lGDD-DLtSlA~al~~~~-~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~ 108 (243)
T PF01861_consen 35 ALMAERGDLEGKRILFLGDD-DLTSLALALTGLP-KRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEE 108 (243)
T ss_dssp HHHHHTT-STT-EEEEES-T-T-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TT
T ss_pred HHHHhcCcccCCEEEEEcCC-cHHHHHHHhhCCC-CeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHH
Confidence 45444444456789988833 3345666666655 68999999999999999999999987 999999988754443
No 260
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=89.53 E-value=0.45 Score=40.80 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=28.7
Q ss_pred CCCcEEEEeccccHHHHHHHHHC-CCCccEEEEecC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIR 158 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis 158 (196)
++.+|||+||..|.++.-..++. |+ ..|+|||+-
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~-g~v~gVDll 103 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPN-GMVLGVDLL 103 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCC-ceEEEEeee
Confidence 35689999999999998777765 88 789999974
No 261
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=89.44 E-value=0.47 Score=42.24 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=32.6
Q ss_pred CcEEEEeccccHHHHHHH----HHCCC---CccEEEEecCHHHHHHHHHH
Q 029244 126 PLMVDIGSGSGRFLIWLA----RRNPD---SGNYLGLEIRQKLVKRAEFW 168 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA----~~~p~---~~~ViGIDis~~ml~~A~~~ 168 (196)
-+|+..||++|.=...|| +..+. ...|+|+||++.+|+.|++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 589999999997554443 32211 15799999999999999875
No 262
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.41 E-value=1.1 Score=38.68 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=51.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
.++.+||=||..+|.....++...++ ..++|||.++.+...-..-+++. .||-.+..|+..
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~-G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~ 135 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGE-GRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARK 135 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCC-CcEEEEEecchhHHHHHHHHHhC--CCceeeecccCC
Confidence 35679999999999999999999987 78999999999987776666553 478888888764
No 263
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=89.37 E-value=0.63 Score=44.18 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=49.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCC---CccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPD---SGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRK 185 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~---~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~ 185 (196)
+..+|+|..||+|.+.+..++.... ...++|.|+++.....|+.|.--+|+. ++....+|..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl 251 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL 251 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence 3458999999999999888876642 156999999999999999999888876 4555556543
No 264
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=89.10 E-value=0.15 Score=46.21 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=41.1
Q ss_pred CCCcEEEEeccccHHHH-HHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC
Q 029244 124 TLPLMVDIGSGSGRFLI-WLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i-~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl 174 (196)
.+..|+|+..|-|+|++ .+.+... ..|+++|++|..++..+++++.++.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~~N~V 243 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAEANNV 243 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHHhcch
Confidence 34789999999999999 5555543 4799999999999999999987754
No 265
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=88.80 E-value=1.4 Score=37.75 Aligned_cols=46 Identities=26% Similarity=0.231 Sum_probs=39.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHh
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL 172 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~ 172 (196)
.+..|||--+|+|..++..-... ..++|+|++++-++.+.+++.+.
T Consensus 222 ~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 222 PGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHhh
Confidence 56799999999999987766654 36999999999999999998764
No 266
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=88.56 E-value=0.81 Score=40.55 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=39.0
Q ss_pred CCcEEEEecccc--HHHHHHHH-HCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSG--RFLIWLAR-RNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG--~~~i~LA~-~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
-..+||||||-= ...-.+|+ ..|+ .+|+=||+++-.+..++..+....-....++.+|+.+.
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~-aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p 133 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPD-ARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP 133 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT--EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCC-ceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence 358999999943 34455554 4688 89999999999999999887654322389999998753
No 267
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=87.80 E-value=0.49 Score=42.42 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=36.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccCCcCC
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREGSCRS 195 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~~~~~ 195 (196)
+.+.+|.|+|||.+.++. .-+ ..|+.+|+-.. |=+++.+|+.++|.+++..|
T Consensus 179 ~~~~vIaD~GCGEakiA~----~~~--~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svD 230 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----SER--HKVHSFDLVAV---------------NERVIACDMRNVPLEDESVD 230 (325)
T ss_pred cCceEEEecccchhhhhh----ccc--cceeeeeeecC---------------CCceeeccccCCcCccCccc
Confidence 456799999999998775 222 36888886321 34566788888887776654
No 268
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.68 E-value=0.72 Score=41.07 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=40.2
Q ss_pred EEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
|+|+.||.|.+...+-+..-+ .+.++|+++.+++.-+.|.. + .++.+|+.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~--~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~ 53 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK--CVFASEIDKYAQKTYEANFG-----N-KVPFGDITKIS 53 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe--EEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhh
Confidence 689999999999999766533 47889999999988887753 2 34456776654
No 269
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=86.50 E-value=0.28 Score=43.92 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=44.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccCC
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREGS 192 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~~ 192 (196)
+.+..++|+|||.|..+.. +|. ..++|.|++...+..+++. |. .....+|+.+++.+..
T Consensus 44 ~~gsv~~d~gCGngky~~~----~p~-~~~ig~D~c~~l~~~ak~~----~~--~~~~~ad~l~~p~~~~ 102 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV----NPL-CLIIGCDLCTGLLGGAKRS----GG--DNVCRADALKLPFREE 102 (293)
T ss_pred CCcceeeecccCCcccCcC----CCc-ceeeecchhhhhccccccC----CC--ceeehhhhhcCCCCCC
Confidence 3567999999999977643 466 6799999999998877653 21 1577799998887644
No 270
>PRK00536 speE spermidine synthase; Provisional
Probab=85.92 E-value=1.6 Score=38.39 Aligned_cols=46 Identities=7% Similarity=-0.057 Sum_probs=39.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHH
Q 029244 122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQ 170 (196)
Q Consensus 122 ~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~ 170 (196)
.+...+||=||-|.|..+..+.+. +. +|+-|||++++++.+++-+.
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~--~v~mVeID~~Vv~~~k~~lP 115 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT--HVDFVQADEKILDSFISFFP 115 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC--eeEEEECCHHHHHHHHHHCH
Confidence 345578999999999999999976 43 79999999999999999443
No 271
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.68 E-value=1.5 Score=32.20 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=33.9
Q ss_pred ccccHHHHHHHHHCCCCc-cEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 133 SGSGRFLIWLARRNPDSG-NYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 133 CGsG~~~i~LA~~~p~~~-~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
||.|.++..+++...+.. .|+.||.+++.++.++.. + +.++.+|..+.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~---~~~i~gd~~~~ 52 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G---VEVIYGDATDP 52 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T---SEEEES-TTSH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c---cccccccchhh
Confidence 688889988887653223 699999999997776643 3 67888887653
No 272
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.65 E-value=0.96 Score=39.98 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=42.1
Q ss_pred CCCcEEEEeccccHHHHHHHH-HCCCCccEEEEecCHHHHHHHHHHHHHh-CCCC-eEEEE
Q 029244 124 TLPLMVDIGSGSGRFLIWLAR-RNPDSGNYLGLEIRQKLVKRAEFWVQEL-ALSN-IALTL 181 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~-~~p~~~~ViGIDis~~ml~~A~~~~~~~-gl~n-I~f~~ 181 (196)
++..+||||.|--.+=-.+.- .+ . ..++|.||++..++.|+..+..+ ++.+ |++..
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-g-wrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~ 136 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-G-WRFVGSEIDSQSLSSAKAIISANPGLERAIRLRR 136 (292)
T ss_pred CceEEEeeccCcccccccccceee-c-ceeecCccCHHHHHHHHHHHHcCcchhhheeEEe
Confidence 456899999998777655543 33 3 67999999999999999999877 5543 55543
No 273
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=85.30 E-value=0.49 Score=45.31 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=26.6
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCH-----HHHHHHHHH
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQ-----KLVKRAEFW 168 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~-----~ml~~A~~~ 168 (196)
..+||||||+|.|+..|..++ |+.+-+.+ ..++.|.++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleR 161 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALER 161 (506)
T ss_pred EEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhc
Confidence 489999999999999998773 55544443 345555443
No 274
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=85.06 E-value=1.9 Score=39.79 Aligned_cols=70 Identities=23% Similarity=0.272 Sum_probs=49.6
Q ss_pred ChhhHHHHcc---CCCCCc---EEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEc
Q 029244 112 PIPDWSEVYK---NPTLPL---MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLI 182 (196)
Q Consensus 112 ~l~~w~~~f~---~~~~~~---ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~ 182 (196)
.+..|..... +.+... =+|||+|.-.+=-.+.....+ ..++|+|++..-+..|.++++++++.. |..+..
T Consensus 84 nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n-~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~ 160 (419)
T KOG2912|consen 84 NYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNN-WYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKV 160 (419)
T ss_pred hhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhcc-ceeeeeeccccccchhhccccccccccceeeEEe
Confidence 3578877442 112223 379999988877666544334 679999999999999999999988754 555544
No 275
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=84.40 E-value=1.1 Score=41.28 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=52.9
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEcccccCcccCC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKNIIREGS 192 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~L~~e~~ 192 (196)
..++|+|||.|.....++.... ..++|+|.++--+..+.......++.| -.++.+|+.+.+.|+.
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn 177 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDN 177 (364)
T ss_pred ccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCcc
Confidence 4799999999999999987653 579999999999999988888777754 4457788887776644
No 276
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=84.08 E-value=1.7 Score=39.83 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=44.6
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRK 185 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~ 185 (196)
....+|+|.|.|.++-.+...+|. |-|||.+..-+..+..... .| |+.+.+|..
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~---ik~infdlp~v~~~a~~~~-~g---V~~v~gdmf 231 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH---IKGINFDLPFVLAAAPYLA-PG---VEHVAGDMF 231 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC---CceeecCHHHHHhhhhhhc-CC---cceeccccc
Confidence 368999999999999999988887 9999999999888887764 33 666677754
No 277
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=83.34 E-value=2.5 Score=39.69 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=48.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHH--Hh---CC--CCeEEEEcccccCcc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQ--EL---AL--SNIALTLISRKNIIR 189 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~--~~---gl--~nI~f~~~Da~~L~~ 189 (196)
...++|-||-|.|--+..+-+ +|+..+|+-||++|+|++.++++.. +. .. +.++++..|+.+...
T Consensus 289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr 360 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR 360 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH
Confidence 346899999999988888775 5643689999999999999995432 21 12 248899999876543
No 278
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=83.09 E-value=1.8 Score=38.73 Aligned_cols=59 Identities=15% Similarity=0.056 Sum_probs=45.3
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIRE 190 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e 190 (196)
..+++||.||-|.+.+.+-...-+ -+.++|+++.+++.=+.|... ..++..|+.++..+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~--~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~ 61 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFE--IVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGE 61 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCe--EEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChh
Confidence 468999999999999999887644 699999999999887776532 45566666655443
No 279
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=83.07 E-value=3.2 Score=38.44 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=38.4
Q ss_pred CCCCCcEEEEeccccHHHHHHHHH----CC----CCccEEEEecCHHHHHHHHHHHHHh
Q 029244 122 NPTLPLMVDIGSGSGRFLIWLARR----NP----DSGNYLGLEIRQKLVKRAEFWVQEL 172 (196)
Q Consensus 122 ~~~~~~ILDIGCGsG~~~i~LA~~----~p----~~~~ViGIDis~~ml~~A~~~~~~~ 172 (196)
.|..-.++|||.|.|.++.-+.+. .| . ..+.-||+|++..+.=+++++..
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~-~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEA-LSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhc-ceEEEEecCHHHHHHHHHHHhcc
Confidence 344457999999999999777543 23 3 57999999999988877777644
No 280
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=82.07 E-value=3.1 Score=37.30 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=36.9
Q ss_pred CCCcEEEEeccc-cHHHHHHHHHCCCCccEEEEecCHHHHHHHHHH
Q 029244 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW 168 (196)
Q Consensus 124 ~~~~ILDIGCGs-G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~ 168 (196)
.+..||.+|+|. |..++.+|+..+. ..|+++|.+++.++.+++.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence 456899999998 9999999998764 3699999999998887764
No 281
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=81.79 E-value=4 Score=35.22 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=49.6
Q ss_pred CCCCChhhHHHHccCCCCCcEEEEeccccHHHHHHHHH---CCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 029244 108 TVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARR---NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISR 184 (196)
Q Consensus 108 ~~p~~l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~---~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da 184 (196)
.+|-.+....+..-......|+|+|.-.|..++..|.. ..+...|+|+||+-+.++.+..+ ..+|.|++++-
T Consensus 53 k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss 127 (237)
T COG3510 53 KSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSS 127 (237)
T ss_pred CCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCC
Confidence 44554444444443334468999999999998888754 22215799999998876655443 35688888876
Q ss_pred cc
Q 029244 185 KN 186 (196)
Q Consensus 185 ~~ 186 (196)
.+
T Consensus 128 ~d 129 (237)
T COG3510 128 TD 129 (237)
T ss_pred CC
Confidence 54
No 282
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.66 E-value=3.1 Score=38.97 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=55.5
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++..|+|++|-.|.=++.+|...++...++|+|.+.+.++.-++.+...|..++....+|....
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t 276 (413)
T KOG2360|consen 213 PGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT 276 (413)
T ss_pred CCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence 4579999999999999999976552278999999999999999999999988888888888763
No 283
>PRK07102 short chain dehydrogenase; Provisional
Probab=81.39 E-value=8.8 Score=31.49 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=41.4
Q ss_pred cEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 127 LMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+++=.| |+|.++..+++..- .+.+|++++.+++-.+...+.+...+-.++.++.+|+.+.
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDT 63 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence 577777 46777777776542 1157999999998776555555444445789999998764
No 284
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.04 E-value=10 Score=31.48 Aligned_cols=70 Identities=10% Similarity=0.024 Sum_probs=47.6
Q ss_pred hHHHHccCCCCCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 115 ~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.|...+.- .++++|=.| |+|.++..+++..- ...+|+.++.+.+-++.....+...+ .++.++.+|+.+.
T Consensus 3 ~~~~~~~~-~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d~ 73 (259)
T PRK08213 3 TVLELFDL-SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG-IDALWIAADVADE 73 (259)
T ss_pred cchhhhCc-CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEccCCCH
Confidence 35554432 456788888 67888888887642 11579999999887776666655433 3577888888753
No 285
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=79.01 E-value=5.4 Score=36.24 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=52.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREG 191 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~ 191 (196)
.+..|+=+| -.-..++++|-.+-. .+|.-|||++..+..-.+-+++.|++||..+.-|+.+-.++.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mp-k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~ 217 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMP-KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPED 217 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCC-ceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHH
Confidence 456788888 556666777755433 379999999999999999999999999999999988765543
No 286
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.23 E-value=2.8 Score=39.08 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=41.7
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEE---EecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLG---LEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViG---IDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
..++|+|||.|.++.+++.-.+. .+++- ||.....+..=.+...++. .-+.-++.|+++|.
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~-~~~~l~vlvdR~s~R~K~D~k~~~~~~-~vi~R~riDI~dLk 247 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQI-QNVYLFVLVDRKSSRLKFDRKLRNKNS-LVIKRIRIDIEDLK 247 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhcc-ccEEEEEeecccchhhhhhhhhhccCc-chhheeEeeHHhcC
Confidence 48999999999999999998887 67777 7776665544333332221 12555666776653
No 287
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.54 E-value=11 Score=30.50 Aligned_cols=58 Identities=14% Similarity=-0.043 Sum_probs=40.4
Q ss_pred CCcEEEEeccccHHHHHHHHHCC--CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP--DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p--~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..||=+| |+|.++..+++..- + .+|++++.+++......+.+.+. ..++++.+|+.+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEG-YKVAITARDQKELEEAAAELNNK--GNVLGLAADVRD 65 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCC-CEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCC
Confidence 35788888 57888888776542 3 57999999987766655554432 457888888764
No 288
>PRK10458 DNA cytosine methylase; Provisional
Probab=77.14 E-value=4.8 Score=38.25 Aligned_cols=59 Identities=10% Similarity=-0.061 Sum_probs=42.2
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
-+++||.||.|.+...+-...-+ .|.++|+++.+.+.=+.|.. ...+...+.+|+.++.
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~--~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQ--CVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDIT 147 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCE--EEEEEechHHHHHHHHHHcC--CCCccceeccChhhCc
Confidence 48999999999999998665433 68999999998877776641 1122345556666654
No 289
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=76.58 E-value=2.5 Score=41.90 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=31.5
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQ 159 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~ 159 (196)
+...||||||..|.++...++..|-+..|+|||+-|
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 446899999999999999999988667899999865
No 290
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=75.04 E-value=5.5 Score=37.08 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=17.2
Q ss_pred CcEEEEeccccHHHHHHHHH
Q 029244 126 PLMVDIGSGSGRFLIWLARR 145 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~ 145 (196)
-.|+|+|||+|.+++.+...
T Consensus 65 ~~iaDlGcs~G~ntl~~vs~ 84 (386)
T PLN02668 65 FTAVDLGCSSGSNTIHIIDV 84 (386)
T ss_pred eeEEEecCCCCccHHHHHHH
Confidence 47999999999999887655
No 291
>PRK07454 short chain dehydrogenase; Provisional
Probab=73.99 E-value=21 Score=29.08 Aligned_cols=61 Identities=13% Similarity=-0.043 Sum_probs=41.6
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.+.+|=.|+ +|.++..+++..- +..+|+.++.+++..+...+.+.+.+ .++.++.+|+.+.
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 67 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNP 67 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCH
Confidence 356788884 7777777776542 11579999999887666555554433 3588889998754
No 292
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=73.94 E-value=6.5 Score=35.33 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=36.5
Q ss_pred cEEEEeccc-cHHHHHHHHHCCCCccEEEEecCHHHHHHHHHH
Q 029244 127 LMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW 168 (196)
Q Consensus 127 ~ILDIGCGs-G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~ 168 (196)
.|+=+|||+ |.+++.+|+..+. ..|+.+|++++.++.|++.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEA 212 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHh
Confidence 799999996 7777888999887 7899999999999999874
No 293
>PRK07904 short chain dehydrogenase; Provisional
Probab=73.59 E-value=12 Score=31.39 Aligned_cols=62 Identities=6% Similarity=0.040 Sum_probs=43.0
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-C-CccEEEEecCHHH-HHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-D-SGNYLGLEIRQKL-VKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~-~~~ViGIDis~~m-l~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
...||=.|+ +|.++..+|+..- . ..+|+.++.+++. ++.+.+.+...+-.+++++.+|+.+.
T Consensus 8 ~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~ 72 (253)
T PRK07904 8 PQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDT 72 (253)
T ss_pred CcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCCh
Confidence 346888887 6778888876531 1 1579999988774 66666666655544789999998653
No 294
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=72.78 E-value=19 Score=29.72 Aligned_cols=60 Identities=8% Similarity=-0.041 Sum_probs=42.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
.++.+|=.| |+|.++..+++.+ .. .+|+.++.+++.++.....+++.+ .++.++.+|+.+
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAG-AHVLVNGRNAATLEAAVAALRAAG-GAAEALAFDIAD 71 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCC
Confidence 346788778 4677777777654 23 689999999887776666665544 347888888765
No 295
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=72.57 E-value=19 Score=29.50 Aligned_cols=59 Identities=7% Similarity=-0.092 Sum_probs=41.8
Q ss_pred CCcEEEEeccccHHHHHHHHHCC--CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP--DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRK 185 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p--~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~ 185 (196)
+..+|=.| |+|.++..+++.+- . .+|++++.+++.++...+.+.+.+..++.++..|+.
T Consensus 12 ~k~vlItG-~~g~iG~~la~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~ 72 (247)
T PRK08945 12 DRIILVTG-AGDGIGREAALTYARHG-ATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLL 72 (247)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 45788888 57788877776542 3 579999999887776666665555445777777774
No 296
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=72.54 E-value=2.6 Score=39.48 Aligned_cols=62 Identities=24% Similarity=0.278 Sum_probs=45.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHh-------CC--CCeEEEEcccc
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-------AL--SNIALTLISRK 185 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~-------gl--~nI~f~~~Da~ 185 (196)
.+.....|+|+|.|.....+|..... ..=+|+|+....-+.|..+.+.. |- ..+..+.++..
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhcc-ccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 35568999999999999999887766 67899999998888887765432 22 22666666543
No 297
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=72.50 E-value=2.7 Score=37.64 Aligned_cols=38 Identities=8% Similarity=0.110 Sum_probs=31.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVK 163 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~ 163 (196)
..++|||+|||.|.-.+....... ..+...|.+.+.++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc--ceeeeEecchhhee
Confidence 457899999999999998887753 36888898888873
No 298
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=71.63 E-value=6.7 Score=34.77 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=36.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWV 169 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~ 169 (196)
...+||=-|||-|+++..+|.+. ..+.|.|.|--|+-..+--+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiL 98 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFIL 98 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHH
Confidence 45789999999999999999994 46999999999987665543
No 299
>PRK08703 short chain dehydrogenase; Provisional
Probab=71.39 E-value=18 Score=29.52 Aligned_cols=60 Identities=10% Similarity=-0.046 Sum_probs=40.2
Q ss_pred CCcEEEEeccccHHHHHHHHHCC--CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP--DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p--~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+.++|=.|+ +|.++..+++.+. . .+|++++.+++.++.....+.+.+...+.++..|+.+
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 67 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAG-ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMS 67 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcC-CEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecc
Confidence 357888884 7777777776542 3 6799999999877766665554443345666677643
No 300
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.36 E-value=9.5 Score=35.13 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=37.2
Q ss_pred CCCcEEEEeccc-cHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCGs-G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
.+.+||=+|+|. |..++..|+.+.- ..|+.+|+.+..++.|++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK 212 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH
Confidence 456899999996 7777778888877 789999999999999987
No 301
>PRK06949 short chain dehydrogenase; Provisional
Probab=70.58 E-value=26 Score=28.70 Aligned_cols=60 Identities=8% Similarity=-0.007 Sum_probs=42.3
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..||=.| |+|.++..+++.+. ...+|++++.+++.++.....+...+ .++.++.+|+.+
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 69 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG-GAAHVVSLDVTD 69 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 46788888 67788888876653 21579999999988776666554433 357788888764
No 302
>PRK06172 short chain dehydrogenase; Provisional
Probab=70.51 E-value=26 Score=28.76 Aligned_cols=61 Identities=5% Similarity=-0.110 Sum_probs=42.2
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|=.|+ +|.++..+++.+- ...+|+.++.+++-++...+.+++.+ .++.++.+|+.+.
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 68 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG-GEALFVACDVTRD 68 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence 357888885 6677777765542 11579999999988776666665544 3588888888653
No 303
>PRK06940 short chain dehydrogenase; Provisional
Probab=70.27 E-value=16 Score=31.13 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=39.5
Q ss_pred cEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.+|=-|+ |.++..+|+.+....+|+.++.+++-++...+.+...+ .++.++.+|+.+.
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~ 61 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG-FDVSTQEVDVSSR 61 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEeecCCH
Confidence 3444454 57888888776444789999999877766655554433 2578888888653
No 304
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=69.17 E-value=8.1 Score=33.90 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=26.6
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHH
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW 168 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~ 168 (196)
..|||||+|+|-.++..|.... .+|.--|+-. .++.-..+
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~-~~~~L~~~ 127 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLG--AEVVLTDLPK-VVENLKFN 127 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhc--ceeccCCchh-hHHHHHHh
Confidence 4699999999988888887653 3566656544 33433333
No 305
>PRK06125 short chain dehydrogenase; Provisional
Probab=68.59 E-value=31 Score=28.58 Aligned_cols=60 Identities=7% Similarity=-0.103 Sum_probs=40.8
Q ss_pred CCcEEEEeccccHHHHHHHHHCC--CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP--DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p--~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++.+|=.|+ +|.++..+++.+- . .+|++++.+++.++.....+....-.++.++..|+.+
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 68 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEG-CHLHLVARDADALEALAADLRAAHGVDVAVHALDLSS 68 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 356777785 5557776665432 3 5799999999887776666654433457888888764
No 306
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.95 E-value=35 Score=27.77 Aligned_cols=60 Identities=10% Similarity=-0.104 Sum_probs=41.4
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.| |+|.++..+++.. .. ..|+.++.+++..+.....+...+ .++.++..|+.+.
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 68 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEG-VNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDY 68 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCH
Confidence 35677788 4788888887653 23 679999999877666555554333 3588888887543
No 307
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=67.64 E-value=31 Score=28.42 Aligned_cols=60 Identities=8% Similarity=-0.136 Sum_probs=42.9
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++++|=.| |+|.++..+++..- +..+|+.++.+++.++.....++..+ .++.++.+|+.+
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~D~~~ 70 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG-LSAHALAFDVTD 70 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-ceEEEEEccCCC
Confidence 46788888 57888888877542 12679999999988777666665544 247788888765
No 308
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=67.51 E-value=17 Score=31.64 Aligned_cols=60 Identities=23% Similarity=0.169 Sum_probs=39.3
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHH---HHHhC-C-----CCeEEEEcccccCc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW---VQELA-L-----SNIALTLISRKNII 188 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~---~~~~g-l-----~nI~f~~~Da~~L~ 188 (196)
+.|||.=+|-|.=++.+|... .+|+|+|.++-+....+.- ..... . .+|+++.+|..++.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L 145 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL 145 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC
T ss_pred CEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH
Confidence 589999999999999999764 4699999999876655543 33221 1 35999999987754
No 309
>PRK05599 hypothetical protein; Provisional
Probab=67.42 E-value=20 Score=29.82 Aligned_cols=59 Identities=5% Similarity=0.005 Sum_probs=40.7
Q ss_pred EEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+|=.|.+ +.++..+|+.+.+..+|+.++.+++.++...+.+++.+-..+.++..|+.+.
T Consensus 3 vlItGas-~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~ 61 (246)
T PRK05599 3 ILILGGT-SDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDL 61 (246)
T ss_pred EEEEeCc-cHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCH
Confidence 5666764 4567777765433367899999988888777777655533477888887654
No 310
>PRK07576 short chain dehydrogenase; Provisional
Probab=65.44 E-value=39 Score=28.27 Aligned_cols=60 Identities=15% Similarity=0.027 Sum_probs=39.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=.| |+|.++..+++.+. .+..|++++.+++.++...+.+...+ .++.++..|+.+
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~ 69 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG-PEGLGVSADVRD 69 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CceEEEECCCCC
Confidence 45777777 57777777765442 11579999999887766555554433 246777888764
No 311
>PRK07814 short chain dehydrogenase; Provisional
Probab=64.96 E-value=39 Score=28.17 Aligned_cols=60 Identities=7% Similarity=-0.066 Sum_probs=41.2
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.| |+|.++..+++.+ .. .+|++++.+++.++...+.+...+ ..+.++.+|+.+.
T Consensus 10 ~~~vlItG-asggIG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 71 (263)
T PRK07814 10 DQVAVVTG-AGRGLGAAIALAFAEAG-ADVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHP 71 (263)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 46788888 4677777777643 23 689999999887766655554433 3478888887653
No 312
>PRK08643 acetoin reductase; Validated
Probab=64.90 E-value=38 Score=27.88 Aligned_cols=60 Identities=8% Similarity=-0.027 Sum_probs=40.1
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+.+|=+| |+|.++..+++.+- ...+|+.++.+++.++.....+...+ .++.++.+|+.+.
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 63 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDR 63 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence 3566667 45667777765542 11579999999888777766665443 3577888888654
No 313
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=64.43 E-value=4.1 Score=35.76 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=32.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHh
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL 172 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~ 172 (196)
++.++||||||+-.+-+.-|...-+ +|+..|..+.-++..++++++.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~ 102 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKE 102 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCC
Confidence 3458999999996664444433322 5999999999999999988653
No 314
>PRK06181 short chain dehydrogenase; Provisional
Probab=63.95 E-value=42 Score=27.70 Aligned_cols=58 Identities=9% Similarity=-0.021 Sum_probs=38.8
Q ss_pred cEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 127 LMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.+|=.| |+|.++..+++.. .. .+|++++.+++..+...+.+...+ .++.++.+|+.+.
T Consensus 3 ~vlVtG-asg~iG~~la~~l~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 62 (263)
T PRK06181 3 VVIITG-ASEGIGRALAVRLARAG-AQLVLAARNETRLASLAQELADHG-GEALVVPTDVSDA 62 (263)
T ss_pred EEEEec-CCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 566667 4566777776543 23 579999999877766655554433 3588888887654
No 315
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=63.83 E-value=43 Score=27.57 Aligned_cols=59 Identities=10% Similarity=-0.049 Sum_probs=38.7
Q ss_pred CcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHh-CCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQEL-ALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~-gl~nI~f~~~Da~~ 186 (196)
..||=.| |+|.++..+++.+ .. .+|+.+|.+.+.++.....+... +-.++.++.+|+.+
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEG-YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC
Confidence 3577778 5677777776554 23 57999999987766555444332 21358888888764
No 316
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=63.80 E-value=3.5 Score=38.36 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=45.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHH-------HHHHHHHhCCCC--eEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKR-------AEFWVQELALSN--IALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~-------A~~~~~~~gl~n--I~f~~~Da~~ 186 (196)
++..|+|---|||.+++.-|+.. +.|+|.||+-.|+.. .+.|+++-|... +.++.+|..+
T Consensus 208 pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN 276 (421)
T ss_pred CCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccC
Confidence 46799999999999999998875 569999999999983 345666656322 5566666654
No 317
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=63.54 E-value=10 Score=31.73 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=35.3
Q ss_pred hhHHH-HccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHH
Q 029244 114 PDWSE-VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQ 170 (196)
Q Consensus 114 ~~w~~-~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~ 170 (196)
..|.. .++..+...++|.-||+|.+++.+.... ..|+.-|+++..+...+.-++
T Consensus 9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHHh
Confidence 45544 4443245799999999999999887632 469999999999888775444
No 318
>PRK08251 short chain dehydrogenase; Provisional
Probab=63.42 E-value=46 Score=27.14 Aligned_cols=61 Identities=10% Similarity=-0.007 Sum_probs=41.8
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhC-CCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELA-LSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~g-l~nI~f~~~Da~~L 187 (196)
+.+|=.| |+|.++..+++.+. ...+|+.++.+++.++.....+.... -.++.++.+|+.+.
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 65 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDH 65 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCH
Confidence 4577778 57888888776642 11579999999888776665554432 23588888888754
No 319
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=62.82 E-value=18 Score=29.89 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=28.4
Q ss_pred hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecC
Q 029244 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIR 158 (196)
Q Consensus 114 ~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis 158 (196)
.+|.......-...|||||=|+|.---.|-+.+|+ ..|+.+|..
T Consensus 18 L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~-R~I~vfDR~ 61 (160)
T PF12692_consen 18 LNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPD-RRIYVFDRA 61 (160)
T ss_dssp HHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--S-S-EEEEESS
T ss_pred HHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCC-CeEEEEeee
Confidence 46755332223356999999999999999999999 799999964
No 320
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.16 E-value=48 Score=26.92 Aligned_cols=60 Identities=8% Similarity=0.035 Sum_probs=40.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=.|+ +|.++..+++..- +..+|+.++.+.+........+.+.+ .++.++.+|+.+
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 63 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITD 63 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 356777775 6777777776532 11579999999887766666555433 358888888765
No 321
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=61.23 E-value=5.5 Score=38.16 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=40.1
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHH
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQ 170 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~ 170 (196)
...+|=+|=|.|.+...+-...|+ ..+++||+.++|++.|..+..
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~-~~i~~ve~dP~~l~va~q~f~ 340 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPK-FQITAVEIDPEMLEVATQYFG 340 (482)
T ss_pred cCcEEEEecCCCccccceeeecCc-cceeEEEEChhHhhccHhhhc
Confidence 457888999999999999888898 789999999999999998764
No 322
>PRK06914 short chain dehydrogenase; Provisional
Probab=61.22 E-value=50 Score=27.58 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=40.2
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L 187 (196)
..+|=.|+ +|.++..+++..- ++.+|++++.+++.++.........+. .++.++.+|+.+.
T Consensus 4 k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~ 66 (280)
T PRK06914 4 KIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQ 66 (280)
T ss_pred CEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCH
Confidence 45777774 5666777665421 125799999988877666555554443 3588889988764
No 323
>PRK12939 short chain dehydrogenase; Provisional
Probab=60.77 E-value=55 Score=26.51 Aligned_cols=61 Identities=3% Similarity=-0.178 Sum_probs=41.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.|. +|.++..+++.+- .+.+|++++.+++.+....+.++..+ .++.++.+|+.+.
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 68 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADP 68 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 356776664 6788888876542 11579999999887776666655433 3588888888653
No 324
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=60.72 E-value=23 Score=32.82 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=34.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE 171 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~ 171 (196)
++.+||=|.+| |+.++.+....|. +|++||+++..+...+-+.+.
T Consensus 35 ~~d~vl~ItSa-G~N~L~yL~~~P~--~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 35 PDDRVLTITSA-GCNALDYLLAGPK--RIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CCCeEEEEccC-CchHHHHHhcCCc--eEEEEeCCHHHHHHHHHHHHH
Confidence 45689999775 6666666667776 799999999999888877654
No 325
>PRK07062 short chain dehydrogenase; Provisional
Probab=60.66 E-value=50 Score=27.31 Aligned_cols=61 Identities=10% Similarity=-0.088 Sum_probs=41.4
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L 187 (196)
+..+|=.|+ +|.++..+++.+ .. .+|+.++.+++-++.+.+.+.+... .++.++..|+.+.
T Consensus 8 ~k~~lItGa-s~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 71 (265)
T PRK07062 8 GRVAVVTGG-SSGIGLATVELLLEAG-ASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDE 71 (265)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCH
Confidence 457888885 556666776654 23 6799999999887777666654321 2577888887654
No 326
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=60.34 E-value=43 Score=27.78 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=38.6
Q ss_pred cEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 127 LMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++|=.|. +|.++..+++.+- ...+|+.++.+++.++.+.+.+.+.+ ++.++.+|+.+
T Consensus 2 ~vlItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTAS-SRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--EVYAVKADLSD 59 (259)
T ss_pred eEEEEcC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCC
Confidence 3566675 4567777776542 11679999999988877776665433 57788888764
No 327
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=59.78 E-value=22 Score=34.20 Aligned_cols=63 Identities=8% Similarity=0.158 Sum_probs=48.0
Q ss_pred cEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCcccCC
Q 029244 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNIIREGS 192 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~~e~~ 192 (196)
+++-+|||.-.+...+-+-. . ..|+-+|+|+-.++....+-. ..-.-+.+...|+..+..+.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~-~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedE 113 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-F-EDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDE 113 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-C-CCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCc
Confidence 79999999999988887654 3 369999999999988877643 222237888888887766544
No 328
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.44 E-value=58 Score=26.26 Aligned_cols=59 Identities=12% Similarity=-0.040 Sum_probs=39.9
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..||=.|++ |.++..+++... .+.+|++++.+++.+....+.+... .+++++.+|+.+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCC
Confidence 3578888874 667777766542 1157999999988776654544432 368888888765
No 329
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=59.19 E-value=14 Score=33.93 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=32.1
Q ss_pred CCcEEEEec-cccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHH
Q 029244 125 LPLMVDIGS-GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW 168 (196)
Q Consensus 125 ~~~ILDIGC-GsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~ 168 (196)
+.+|+=+|+ |.|.+++.+|+... .+|+++|++++-++.|++-
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh
Confidence 345555544 57889999999654 5799999999998888764
No 330
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=58.98 E-value=16 Score=29.67 Aligned_cols=59 Identities=10% Similarity=0.168 Sum_probs=37.6
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC---CCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL---SNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl---~nI~f~~~Da~~ 186 (196)
..|+.||||.=.....+....++ ..++-||. +++++.-++.+++.+. .|.+++.+|+.+
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~-~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 141 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGG-VRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRD 141 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTT-EEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred cEEEEcCCCCCchHHHhhccccc-eEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence 48999999999999999887666 67777774 4455555555554421 246678888874
No 331
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=58.96 E-value=18 Score=32.93 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=36.6
Q ss_pred CcEEEEeccccHHHHHHHHHCCC-CccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~-~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..|+=+|+ |.++..+++...+ ...|+.||.+++.++..++.. .++.++.+|+.+
T Consensus 232 ~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~ 286 (453)
T PRK09496 232 KRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PNTLVLHGDGTD 286 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CCCeEEECCCCC
Confidence 45666555 7777777765422 157999999999887665532 346677788753
No 332
>PRK07774 short chain dehydrogenase; Provisional
Probab=58.85 E-value=64 Score=26.26 Aligned_cols=60 Identities=8% Similarity=-0.014 Sum_probs=40.0
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.| |+|.++..+++.+ .+ .+|+.++.+++........+...+ .++.++..|+.+.
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 67 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREG-ASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDP 67 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence 35677777 5677888877654 23 579999998876655555544322 3567788887654
No 333
>PRK09135 pteridine reductase; Provisional
Probab=58.64 E-value=62 Score=26.09 Aligned_cols=62 Identities=11% Similarity=-0.105 Sum_probs=38.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecC-HHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIR-QKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis-~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
...||=.|+ +|.++..+++.+- ...+|++++.+ ++..+.....+......++.++.+|+.+.
T Consensus 6 ~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 69 (249)
T PRK09135 6 AKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDP 69 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence 357888995 6788888776542 11679999975 33334333334333334578888887653
No 334
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=58.61 E-value=18 Score=34.50 Aligned_cols=47 Identities=19% Similarity=0.087 Sum_probs=33.6
Q ss_pred ccccHHHHHHHHHCCC-CccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 133 SGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 133 CGsG~~~i~LA~~~p~-~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
||.|.++..+++...+ +..|+.||.+++.++.+++ . +...+.+|+.+
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~---g~~~i~GD~~~ 470 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R---GIRAVLGNAAN 470 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C---CCeEEEcCCCC
Confidence 6677888888875421 1579999999998877763 1 35677787765
No 335
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=58.41 E-value=23 Score=31.24 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=45.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRK 185 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~ 185 (196)
++.+||+||.|.|.+...+-+..|. .=+-||-.++.++..+.+.-.. -.||.++.+--+
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~We 159 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWE 159 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhccccc-ccceEEEecchH
Confidence 5679999999999999999888887 4566899999998877764322 246777766544
No 336
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=58.19 E-value=19 Score=26.48 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=27.4
Q ss_pred cccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 134 GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 134 GsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
|.|.+++.+|+... .+|+++|.+++-++.+++
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh
Confidence 57899999999876 589999999998877764
No 337
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=57.65 E-value=64 Score=26.58 Aligned_cols=60 Identities=8% Similarity=-0.084 Sum_probs=40.1
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..||=+|+ +|.++..+++.. .. ..|+.++.+.+.++.....+...+ .++.++..|+.+.
T Consensus 11 ~k~vlVtG~-s~gIG~~la~~l~~~G-~~vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 72 (255)
T PRK06113 11 GKCAIITGA-GAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSE 72 (255)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 467888894 566666666543 23 568999998888776655554433 2477788887653
No 338
>PRK05650 short chain dehydrogenase; Provisional
Probab=56.70 E-value=59 Score=27.09 Aligned_cols=59 Identities=7% Similarity=-0.045 Sum_probs=39.0
Q ss_pred cEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 127 LMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+||=.|+ +|.++..+++..- ...+|+.++.+.+-++.....+...+ .++.++.+|+.+.
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 61 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG-GDGFYQRCDVRDY 61 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCH
Confidence 4566664 6667777765532 11579999999887776666655443 3588888888653
No 339
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=56.55 E-value=22 Score=34.53 Aligned_cols=47 Identities=17% Similarity=0.036 Sum_probs=34.2
Q ss_pred ccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 133 SGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 133 CGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
||.|.++..+++.. .+ ..++.||.+++.++.+++ .| ...+.+|+.+.
T Consensus 406 ~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~ 454 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANK-MRITVLERDISAVNLMRK----YG---YKVYYGDATQL 454 (601)
T ss_pred ecCchHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHh----CC---CeEEEeeCCCH
Confidence 67788888887643 23 579999999999887754 23 45777887653
No 340
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=55.73 E-value=14 Score=32.75 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=44.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 123 ~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
..+..|.+||-|.|.++..+....- .++.-||++...+.-.+...+... ....+..+|+..+
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~--~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADV--ARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRF 110 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcch--hheeeeeeccccChHHHHHhhcCC-cceEEecccccee
Confidence 4567899999999999999876643 368888888877776666555333 2466667776543
No 341
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=55.36 E-value=67 Score=26.08 Aligned_cols=59 Identities=7% Similarity=-0.004 Sum_probs=39.6
Q ss_pred cEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 127 LMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.+|=.| |+|.++..+++..- ...+|++++.+++..+.....+...+ .++.++.+|+.+.
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 62 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKE 62 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCH
Confidence 455566 57888888886542 11579999999877666555544333 3588888888653
No 342
>PRK12829 short chain dehydrogenase; Provisional
Probab=54.61 E-value=61 Score=26.52 Aligned_cols=60 Identities=5% Similarity=-0.036 Sum_probs=38.4
Q ss_pred CCCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.++|=+|. +|.++..+++..- +..+|++++.+++.++...+... +. ++.++.+|+.+.
T Consensus 10 ~~~~vlItGa-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~-~~~~~~~D~~~~ 70 (264)
T PRK12829 10 DGLRVLVTGG-ASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP--GA-KVTATVADVADP 70 (264)
T ss_pred CCCEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--cC-ceEEEEccCCCH
Confidence 4467888887 4777777766531 11579999998876654433332 22 467788887653
No 343
>PRK07109 short chain dehydrogenase; Provisional
Probab=54.48 E-value=73 Score=28.14 Aligned_cols=61 Identities=10% Similarity=-0.022 Sum_probs=42.0
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..||=.|+ +|.++..+++.+- .+.+|+.++.+++.++...+.++..+ .++.++.+|+.+.
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g-~~~~~v~~Dv~d~ 69 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG-GEALAVVADVADA 69 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEecCCCH
Confidence 356777774 5667777765431 12579999999988877777776555 3578888887653
No 344
>PRK05875 short chain dehydrogenase; Provisional
Probab=54.30 E-value=79 Score=26.32 Aligned_cols=62 Identities=6% Similarity=-0.098 Sum_probs=40.1
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhC-CCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELA-LSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~g-l~nI~f~~~Da~~L 187 (196)
+..+|=.|. +|.++..+++.+- ...+|++++.+++.++...+.+...+ ..++.++.+|+.+.
T Consensus 7 ~k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~ 70 (276)
T PRK05875 7 DRTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDE 70 (276)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCH
Confidence 357888885 4667777776432 11579999998877665555444332 24688888887653
No 345
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.64 E-value=68 Score=25.95 Aligned_cols=58 Identities=10% Similarity=0.036 Sum_probs=38.3
Q ss_pred CcEEEEeccccHHHHHHHHHCC--CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP--DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p--~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
..+|=+|+ +|.++..+++..- . .+|++++.+++.++.....+.. + .++.++.+|+.+.
T Consensus 6 ~~vlItGa-sg~iG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~~ 65 (251)
T PRK07231 6 KVAIVTGA-SSGIGEGIARRFAAEG-ARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSDE 65 (251)
T ss_pred cEEEEECC-CChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCCH
Confidence 46666665 5667777665532 3 5799999999877665555433 2 3478888887653
No 346
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=53.33 E-value=62 Score=28.02 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=44.5
Q ss_pred CCCcEEEEecccc----HHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEccc
Q 029244 124 TLPLMVDIGSGSG----RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISR 184 (196)
Q Consensus 124 ~~~~ILDIGCGsG----~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da 184 (196)
....|++++|+-| .+++..|.+... .+++.|-.+++-+...++.+...++.+ ++|+.+|.
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~Tg-GR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTG-GRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcC-CeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 3468999977654 344455555556 689999999998888888888778765 69988884
No 347
>PRK08339 short chain dehydrogenase; Provisional
Probab=53.01 E-value=80 Score=26.49 Aligned_cols=62 Identities=11% Similarity=0.027 Sum_probs=40.6
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|=.|++ |.++..+|+.+- ...+|+.++.+++.++...+.+.+..-.++.++.+|+.+.
T Consensus 8 ~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 70 (263)
T PRK08339 8 GKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKR 70 (263)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCH
Confidence 3567777765 445666665432 1157999999988877776666543223588888888754
No 348
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=52.64 E-value=57 Score=26.56 Aligned_cols=59 Identities=7% Similarity=0.023 Sum_probs=40.5
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..+|=.| |+|.++..+++.+- +..+|++++.+++..+.....+...+ .++.++.+|+.+
T Consensus 5 ~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 64 (258)
T PRK12429 5 KVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTD 64 (258)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 4566555 47888888887642 11579999999988776666555443 357888888764
No 349
>PRK07677 short chain dehydrogenase; Provisional
Probab=51.83 E-value=77 Score=26.03 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=37.6
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..+|=.|++. .++..+++.+- ...+|+.++.+++.++...+.+.+.+ .++.++.+|+.+
T Consensus 2 k~~lItG~s~-giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (252)
T PRK07677 2 KVVIITGGSS-GMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRN 61 (252)
T ss_pred CEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 3567677644 45655554431 11579999999887776666555443 357888888754
No 350
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=51.53 E-value=86 Score=25.28 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=40.8
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.||=.|+ +|.++..+++.+- ...+|++++.+++.+......+...+ .++.++.+|+.+.
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 67 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDR 67 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence 356887775 6777777765432 11579999999877766666555433 3588888888653
No 351
>PRK05867 short chain dehydrogenase; Provisional
Probab=51.31 E-value=78 Score=26.03 Aligned_cols=60 Identities=3% Similarity=-0.160 Sum_probs=40.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++.+|=.|++ |.++..+++..- ...+|+.++.+++.++.....+...+ .++.++.+|+.+
T Consensus 9 ~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 69 (253)
T PRK05867 9 GKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQ 69 (253)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 4678888864 556666665432 11579999999888777666665544 357788888764
No 352
>PRK07024 short chain dehydrogenase; Provisional
Probab=51.05 E-value=38 Score=28.05 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=37.0
Q ss_pred cEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 127 LMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++|=.|+ +|.++..+++... ...+|+.++.+++.++...+.+...+ ++.++.+|+.+
T Consensus 4 ~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 61 (257)
T PRK07024 4 KVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRD 61 (257)
T ss_pred EEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCC
Confidence 4666675 6677777776542 11579999999887765544432222 68888888865
No 353
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=50.99 E-value=42 Score=31.17 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=34.5
Q ss_pred CCCcEEEEecc-ccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCG-sG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
....+.=+||| .|.-++.-|+.... .+++|||++++-++.|++
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA-~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGA-GRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCC-ceEEEEeCCHHHHHHHHh
Confidence 44678888987 46666777787776 789999999999988875
No 354
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=50.99 E-value=33 Score=33.55 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=34.6
Q ss_pred CcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
..|+=+ |.|.++..+++.. .+ ..++.||.+++.++.+++ .| ...+.+|+.+.
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~ 454 (621)
T PRK03562 401 PRVIIA--GFGRFGQIVGRLLLSSG-VKMTVLDHDPDHIETLRK----FG---MKVFYGDATRM 454 (621)
T ss_pred CcEEEE--ecChHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHh----cC---CeEEEEeCCCH
Confidence 345554 5566666666532 23 579999999999988764 23 45677887754
No 355
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=50.53 E-value=45 Score=26.94 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCCcEEEEeccc-cHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCGs-G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
.+..||.+|+|. |..++.+++... .+|++++.+++..+.+++
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 456899999985 777788887764 479999999887776643
No 356
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=50.22 E-value=38 Score=29.75 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=29.9
Q ss_pred CCCcEEEEeccc-cHHHHHHHHH-CCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSGS-GRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCGs-G~~~i~LA~~-~p~~~~ViGIDis~~ml~~A~~ 167 (196)
.+..||=+|+|. |.+++.+++. ... .+|+++|.+++-++.+++
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~-~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPE-SKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCC-CcEEEEeCcHhHHHHHhh
Confidence 356788888763 3344566665 444 579999999988887754
No 357
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.56 E-value=46 Score=26.46 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=32.4
Q ss_pred CcEEEEecccc-HHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSG-RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG-~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
.+|+|+|-|.= ..+-.|++..- .|+++||.+. ++ + ..++++..|+.+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~---dv~atDI~~~-------~a---~-~g~~~v~DDitn 62 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF---DVLATDINEK-------TA---P-EGLRFVVDDITN 62 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC---cEEEEecccc-------cC---c-ccceEEEccCCC
Confidence 58999998753 34455666643 4999999988 11 1 247788888765
No 358
>PLN02253 xanthoxin dehydrogenase
Probab=49.48 E-value=84 Score=26.25 Aligned_cols=60 Identities=8% Similarity=-0.041 Sum_probs=38.6
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.| |+|.++..+++.+- ...+|+.++.+++..+...+.+. .-.++.++.+|+.+.
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~ 78 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG--GEPNVCFFHCDVTVE 78 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc--CCCceEEEEeecCCH
Confidence 35688778 56777887776542 11679999998776654444332 113578888887653
No 359
>PTZ00357 methyltransferase; Provisional
Probab=49.06 E-value=59 Score=33.37 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=42.2
Q ss_pred cEEEEeccccHHHHH---HHHHCCCCccEEEEecCHHHHHHHHHHHH-HhCCC--------CeEEEEcccccCcc
Q 029244 127 LMVDIGSGSGRFLIW---LARRNPDSGNYLGLEIRQKLVKRAEFWVQ-ELALS--------NIALTLISRKNIIR 189 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~---LA~~~p~~~~ViGIDis~~ml~~A~~~~~-~~gl~--------nI~f~~~Da~~L~~ 189 (196)
.|+=+|+|-|-+.-. .++...-..+|++||.++..+.....+.. ..... .|+++..|+.++..
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~ 777 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIAT 777 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccc
Confidence 589999999987643 33333222689999999775555544432 22232 28999999998753
No 360
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=48.95 E-value=29 Score=32.08 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=42.6
Q ss_pred EecccCCCCCCCCCCCC-hhhHHHHccCCCCCcEEEEeccccH----HHHHHHHHCCCCccEEEEecCHHHHH
Q 029244 96 IRQHVNPLSSSFTVPAP-IPDWSEVYKNPTLPLMVDIGSGSGR----FLIWLARRNPDSGNYLGLEIRQKLVK 163 (196)
Q Consensus 96 ~r~hvnP~~~~~~~p~~-l~~w~~~f~~~~~~~ILDIGCGsG~----~~i~LA~~~p~~~~ViGIDis~~ml~ 163 (196)
.+|.-||......+-.. .-.|.+.. +.+.++-.|.|||. ++..+.+++|+ ..|+|+|.....+.
T Consensus 185 l~Qf~np~Np~~hy~ttg~EI~~q~~---g~vDi~V~gaGTGGTitgvGRylke~~~~-~kVv~vdp~~S~~~ 253 (362)
T KOG1252|consen 185 LDQFHNPGNPLAHYETTGPEIWRQLD---GKVDIFVAGAGTGGTITGVGRYLKEQNPN-IKVVGVDPQESIVL 253 (362)
T ss_pred HHHhcCCCCcccccccccHHHHHHhc---CCCCEEEeccCCCceeechhHHHHHhCCC-CEEEEeCCCcceec
Confidence 34444554443323222 23476664 34678888999986 56778889999 99999999887664
No 361
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=48.88 E-value=7.1 Score=37.65 Aligned_cols=63 Identities=10% Similarity=0.054 Sum_probs=52.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCC-eEEEEccccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IALTLISRKN 186 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~n-I~f~~~Da~~ 186 (196)
+...|||-=|++|.-++..|+..|+-..|++-|.++..++..++|++.++..+ |.....|+..
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~ 172 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANV 172 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHH
Confidence 44689999999999999999998865679999999999999999998876554 5555666553
No 362
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=48.83 E-value=1e+02 Score=25.13 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=36.3
Q ss_pred EEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 128 MVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+|=.|+ +|.++..+++.. .. ..|+.++.+++.++...+.+...+ .++.++.+|+.+
T Consensus 3 ~lItG~-sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 60 (254)
T TIGR02415 3 ALVTGG-AQGIGKGIAERLAKDG-FAVAVADLNEETAKETAKEINQAG-GKAVAYKLDVSD 60 (254)
T ss_pred EEEeCC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCC
Confidence 555664 677777766543 23 579999988776665555554443 357788888764
No 363
>PRK06194 hypothetical protein; Provisional
Probab=48.60 E-value=65 Score=26.98 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=38.7
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
.++|=.|. +|.++..+++..- ...+|+.+|.+.+.++.....+...+ .++.++.+|+.+
T Consensus 7 k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d 66 (287)
T PRK06194 7 KVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG-AEVLGVRTDVSD 66 (287)
T ss_pred CEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 46776664 5666766665432 11579999999887766655554433 257888888865
No 364
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=48.50 E-value=48 Score=28.15 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=32.4
Q ss_pred CCCcEEEEecc-ccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCG-sG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
.+..||..|+| .|..++.+|+... .+|++++.+++..+.+++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH
Confidence 34577778876 4888899998875 469999999998877643
No 365
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=48.48 E-value=32 Score=30.41 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=45.7
Q ss_pred hhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHH
Q 029244 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQ 170 (196)
Q Consensus 114 ~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~ 170 (196)
.+-...+........+|.--|.|..+..+-++.++ ..++++|.+|-+-+.|+.-.+
T Consensus 33 devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se-~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 33 DEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSE-LKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred hhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcH-hhhhhhccChHHHHHHHHhhH
Confidence 33344444445678999999999999999999999 899999999999888876654
No 366
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=48.27 E-value=47 Score=25.20 Aligned_cols=57 Identities=9% Similarity=-0.086 Sum_probs=38.3
Q ss_pred EEEEeccccHHHHHHHHHC---CCCccEEEEecC--HHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 128 MVDIGSGSGRFLIWLARRN---PDSGNYLGLEIR--QKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~~---p~~~~ViGIDis--~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+|=+|++ |.++..+++.+ .. ..|+.+..+ .+.++....++...+ .++.+++.|+.+.
T Consensus 3 ~lItGa~-~giG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~ 64 (167)
T PF00106_consen 3 VLITGAS-SGIGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDP 64 (167)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSH
T ss_pred EEEECCC-CHHHHHHHHHHHhcCc-eEEEEeeecccccccccccccccccc-ccccccccccccc
Confidence 5556654 55666666543 23 478888888 666666666666666 6799999997643
No 367
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=47.95 E-value=15 Score=33.24 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=16.5
Q ss_pred CCCcEEEEeccccHHHHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARR 145 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~ 145 (196)
+.-+|+|+||..|..++.+...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHHH
Confidence 3458999999999999988765
No 368
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.76 E-value=1.1e+02 Score=24.70 Aligned_cols=59 Identities=10% Similarity=0.016 Sum_probs=40.0
Q ss_pred CCcEEEEeccccHHHHHHHHHCC--CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP--DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p--~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=+|+ +|.++..+++... . .+|+.++.+++.++.+.+.+...+ .++.++..|+.+
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 65 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKG-AKLALIDLNQEKLEEAVAECGALG-TEVRGYAANVTD 65 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 356887785 5666766665432 3 579999999887777666665443 357778888654
No 369
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=47.55 E-value=84 Score=25.99 Aligned_cols=59 Identities=7% Similarity=-0.032 Sum_probs=38.7
Q ss_pred cEEEEeccccHHHHHHHHHC------CCCccEEEEecCHHHHHHHHHHHHHhC-CCCeEEEEcccccC
Q 029244 127 LMVDIGSGSGRFLIWLARRN------PDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIALTLISRKNI 187 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~------p~~~~ViGIDis~~ml~~A~~~~~~~g-l~nI~f~~~Da~~L 187 (196)
.+|-.|++ |.++..+|+.+ .. .+|+.++.+++.++...+.+.... -.++.++.+|+.+.
T Consensus 2 ~vlItGas-~GIG~~~a~~la~~~~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~ 67 (256)
T TIGR01500 2 VCLVTGAS-RGFGRTIAQELAKCLKSPG-SVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAE 67 (256)
T ss_pred EEEEecCC-CchHHHHHHHHHHhhccCC-cEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCH
Confidence 35666764 55666665543 23 679999999888877776665421 12578888887653
No 370
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=47.47 E-value=48 Score=28.96 Aligned_cols=42 Identities=10% Similarity=0.076 Sum_probs=30.3
Q ss_pred CCcEEEEecc-ccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 125 ~~~ILDIGCG-sG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
+..||=+|+| .|.+++.+|+...- ..|+++|.+++.++.+++
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH
Confidence 4567767775 45666777777643 369999999998877754
No 371
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=47.22 E-value=1.2e+02 Score=24.77 Aligned_cols=61 Identities=8% Similarity=-0.101 Sum_probs=40.6
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|=.|+ +|.++..+++..- ...+|+.++.+++..+...+.+.+.+ .++.++.+|+.+.
T Consensus 7 ~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 68 (262)
T PRK13394 7 GKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG-GKAIGVAMDVTNE 68 (262)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC-ceEEEEECCCCCH
Confidence 356775554 5667766665432 11579999999988877777665544 3578888887653
No 372
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=47.03 E-value=1.1e+02 Score=25.08 Aligned_cols=60 Identities=8% Similarity=-0.061 Sum_probs=40.0
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=.| |+|.++..+++.+- +..+|+.++.+++.+......+...+ .++.++..|+.+
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 69 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG-IKAHAAPFNVTH 69 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEecCCCC
Confidence 35677777 56677777776542 11579999999887776666655443 346777788764
No 373
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=46.85 E-value=23 Score=32.60 Aligned_cols=34 Identities=15% Similarity=0.041 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 134 GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 134 GsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
|.|..+..+|.....+.+|+|+|++++.++..++
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 5555555555433222579999999999988775
No 374
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=46.64 E-value=28 Score=33.88 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=25.8
Q ss_pred CCcEEEEeccccHHHHHHHHHC-------CC----CccEEEEecCH
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN-------PD----SGNYLGLEIRQ 159 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~-------p~----~~~ViGIDis~ 159 (196)
.-.|+|+|-|+|...+...+.. |. ..+++++|..+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 3589999999999877766433 31 25799999643
No 375
>PRK07831 short chain dehydrogenase; Provisional
Probab=46.58 E-value=1.1e+02 Score=25.19 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=37.6
Q ss_pred CcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHH-hCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQE-LALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~-~gl~nI~f~~~Da~~ 186 (196)
+.+|=.|.+...++..+++.+ .. .+|+.+|.+++.++...+.+++ .+..++.++.+|+.+
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 80 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEG-ARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS 80 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 567777753113444444332 12 5699999998888777766654 233458888888764
No 376
>PRK07035 short chain dehydrogenase; Provisional
Probab=46.36 E-value=1.1e+02 Score=24.89 Aligned_cols=60 Identities=3% Similarity=-0.128 Sum_probs=39.7
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.|++ |.++..+++.+ .. .+|++++.+.+.++...+.+.+.+ .++.++..|+.+.
T Consensus 8 ~k~vlItGas-~gIG~~l~~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 69 (252)
T PRK07035 8 GKIALVTGAS-RGIGEAIAKLLAQQG-AHVIVSSRKLDGCQAVADAIVAAG-GKAEALACHIGEM 69 (252)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCH
Confidence 3567777865 55666665543 13 579999999887776666665443 3477778887644
No 377
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.29 E-value=1.1e+02 Score=24.53 Aligned_cols=59 Identities=10% Similarity=0.007 Sum_probs=39.5
Q ss_pred CcEEEEeccccHHHHHHHHHCC--CCccEEEE-ecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP--DSGNYLGL-EIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p--~~~~ViGI-Dis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
..+|=+| |+|.++..+++.+- . .+|+.+ +.+++.++.....+...+ .++.++.+|+.+.
T Consensus 6 ~~ilI~G-asg~iG~~la~~l~~~g-~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 67 (247)
T PRK05565 6 KVAIVTG-ASGGIGRAIAELLAKEG-AKVVIAYDINEEAAQELLEEIKEEG-GDAIAVKADVSSE 67 (247)
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence 4677677 47788887776532 3 578888 888877666555554433 3588888888654
No 378
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=45.99 E-value=43 Score=33.01 Aligned_cols=64 Identities=8% Similarity=0.078 Sum_probs=46.0
Q ss_pred CcEEEEeccccHHHHH---HHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCC-CeEEEEcccccCccc
Q 029244 126 PLMVDIGSGSGRFLIW---LARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIALTLISRKNIIRE 190 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~---LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~-nI~f~~~Da~~L~~e 190 (196)
.+|+=+|.|-|-+.-. .|+.......+++||.+|.++...+. ......+ .|+++..|+..+...
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap 436 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP 436 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc
Confidence 4688899999988644 34443333789999999999877665 2223333 499999999988753
No 379
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=45.92 E-value=1.3e+02 Score=24.05 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=39.7
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
.+||=.|+ +|.++..+++.+- ....|++++.+++..+.....+...+ .++.++.+|+.+
T Consensus 6 ~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 65 (246)
T PRK05653 6 KTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG-GEARVLVFDVSD 65 (246)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC-CceEEEEccCCC
Confidence 46777775 7888888776531 11469999999887766555554444 347788888764
No 380
>PRK08862 short chain dehydrogenase; Provisional
Probab=45.78 E-value=1e+02 Score=25.42 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=38.8
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++.+|=.|++.|. +..+++.+ .. .+|+.++.+++.++...+.+.+.+. .+..+..|+.+
T Consensus 5 ~k~~lVtGas~GI-G~aia~~la~~G-~~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~D~~~ 65 (227)
T PRK08862 5 SSIILITSAGSVL-GRTISCHFARLG-ATLILCDQDQSALKDTYEQCSALTD-NVYSFQLKDFS 65 (227)
T ss_pred CeEEEEECCccHH-HHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCC-CeEEEEccCCC
Confidence 3578888887754 44444433 23 5799999999988877776665542 46666677654
No 381
>PRK06196 oxidoreductase; Provisional
Probab=45.23 E-value=89 Score=26.97 Aligned_cols=57 Identities=7% Similarity=0.061 Sum_probs=37.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..||=.|+ +|.++..+++.+- .+.+|++++.+++.++.+...+ .++.++.+|+.+.
T Consensus 26 ~k~vlITGa-sggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l-----~~v~~~~~Dl~d~ 83 (315)
T PRK06196 26 GKTAIVTGG-YSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI-----DGVEVVMLDLADL 83 (315)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----hhCeEEEccCCCH
Confidence 357888885 5677777776542 1157999999987665544433 2367788887654
No 382
>PRK09186 flagellin modification protein A; Provisional
Probab=45.09 E-value=1.1e+02 Score=24.81 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=39.4
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHh-CCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQEL-ALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~-gl~nI~f~~~Da~~ 186 (196)
++++|=.|. +|.++..+|+..- ....|++++.+++.++.....+... +-..+.++.+|+.+
T Consensus 4 ~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d 66 (256)
T PRK09186 4 GKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD 66 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC
Confidence 356777776 4667777776542 1157999999888777666665332 22346777888765
No 383
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=43.90 E-value=31 Score=30.90 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=39.8
Q ss_pred CCCcEEEEeccccHHHHHHHHHC-CCCccEEEEecCHH----HHHHHHHHHHHhCCCCeEEEEcccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQK----LVKRAEFWVQELALSNIALTLISRK 185 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~-p~~~~ViGIDis~~----ml~~A~~~~~~~gl~nI~f~~~Da~ 185 (196)
+..+||=||.++|......+... |+ .-|++||.|.. ++..|+++ +||-.+.-|+.
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpe-G~VYAVEfs~rsGRdL~nmAkkR------tNiiPIiEDAr 215 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPE-GCVYAVEFSHRSGRDLINMAKKR------TNIIPIIEDAR 215 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCC-ceEEEEEecccchHHHHHHhhcc------CCceeeeccCC
Confidence 45789999999999998888775 55 88999999864 44444443 45555555543
No 384
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=43.88 E-value=48 Score=31.39 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=37.8
Q ss_pred CcEEEEeccccHHHHHHHHHCC---CCccEEEEecCHHHHHHHHHHHHHhCC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP---DSGNYLGLEIRQKLVKRAEFWVQELAL 174 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p---~~~~ViGIDis~~ml~~A~~~~~~~gl 174 (196)
..|.|..||+|.+++...+... +...++|-|....+...+..+..-.+.
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 4799999999999987654321 113599999999999999998765443
No 385
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=43.18 E-value=68 Score=29.93 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=47.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCC---CccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPD---SGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~---~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
++.+|||+|...|.=++.|-+..-. +..|++=|++...+......+......++.+...|+...+
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p 222 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFP 222 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecc
Confidence 4579999999999998777654321 1379999999999988888776555455555555555444
No 386
>PLN02780 ketoreductase/ oxidoreductase
Probab=42.29 E-value=1.3e+02 Score=26.50 Aligned_cols=60 Identities=10% Similarity=-0.066 Sum_probs=39.2
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhC-CCCeEEEEcccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELA-LSNIALTLISRK 185 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~g-l~nI~f~~~Da~ 185 (196)
+..+|=.|++ |.++..+|+.+. .+.+|+.++.+++.++...+.++... -.++..+..|+.
T Consensus 53 g~~~lITGAs-~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPT-DGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 3578888864 455555555431 11579999999998887777765432 124666777765
No 387
>PRK06197 short chain dehydrogenase; Provisional
Probab=42.22 E-value=1.5e+02 Score=25.25 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=42.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhC-CCCeEEEEcccccCc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELA-LSNIALTLISRKNII 188 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~g-l~nI~f~~~Da~~L~ 188 (196)
.+..||=.|+ +|.++..+|+.+- ...+|+.++.+.+..+.+.+.+.... -.++.++.+|+.+..
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~ 80 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLA 80 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHH
Confidence 3467887775 5677777776432 11579999998887776666554331 235888889887543
No 388
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=42.15 E-value=30 Score=32.26 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=28.8
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHH
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~ 166 (196)
.+|-=| |.|+.+..+|..+.+..+|+|+|++++.++..+
T Consensus 7 mkI~vI--GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 7 VKIAII--GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CeEEEE--CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 345555 567788777766544368999999999988766
No 389
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=42.06 E-value=8.5 Score=29.60 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=13.8
Q ss_pred EEEEeccccHHHHHHHHHC
Q 029244 128 MVDIGSGSGRFLIWLARRN 146 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~~ 146 (196)
-+|||||-|+-.-+--+..
T Consensus 6 NIDIGcG~GNTmda~fRsc 24 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSC 24 (124)
T ss_pred ccccccCCCcchhhhhhcc
Confidence 4799999998765554443
No 390
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.90 E-value=60 Score=30.08 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=32.5
Q ss_pred CCCcEEEEeccccHHHHHH-HHHCCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLIWL-ARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~L-A~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
++..+.=+|.|.=.++..+ |+.... .+++|||++++-.++|++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GA-srIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGA-SRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCc-ccEEEEecCHHHHHHHHh
Confidence 4467888888865555555 555555 689999999999988875
No 391
>PRK07775 short chain dehydrogenase; Provisional
Probab=41.85 E-value=1.6e+02 Score=24.60 Aligned_cols=60 Identities=7% Similarity=-0.203 Sum_probs=39.1
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
...+|=.|+ +|.++..+++..- +..+|+.++.+.+.......++...+ .++.++.+|+.+
T Consensus 10 ~~~vlVtGa-~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 70 (274)
T PRK07775 10 RRPALVAGA-SSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADG-GEAVAFPLDVTD 70 (274)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 356787774 6788888876543 11578888888776655544444333 357788888764
No 392
>PRK09291 short chain dehydrogenase; Provisional
Probab=41.79 E-value=1.4e+02 Score=24.27 Aligned_cols=58 Identities=12% Similarity=-0.002 Sum_probs=37.7
Q ss_pred CcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..||=.|+ +|.++..+++.+ .. .+|+++..+++..+.........+. ++.++.+|+.+
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 62 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKG-HNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTD 62 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCC
Confidence 35777776 566777666543 23 5799999887766555554444443 47888888765
No 393
>PRK06138 short chain dehydrogenase; Provisional
Probab=41.57 E-value=1.4e+02 Score=24.10 Aligned_cols=60 Identities=5% Similarity=-0.096 Sum_probs=38.8
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.|+ +|.++..+++.+- ...+|++++.+.+.+......+. .+ .++.++.+|+.+.
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~ 65 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVGSA 65 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCCCH
Confidence 356777787 5777777765431 11579999998877665554443 22 3478888887653
No 394
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=41.42 E-value=66 Score=28.16 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=32.4
Q ss_pred CCCcEEEEeccc-cHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCGs-G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
.+..||=+|+|. |..++.+|+... .+|+++|.+++.++.+++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 356788889875 777788888764 469999999998877743
No 395
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=40.90 E-value=1.3e+02 Score=25.96 Aligned_cols=61 Identities=10% Similarity=-0.016 Sum_probs=38.8
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.|. +|.++..+++.+- ...+|+.++.+.+..+.+.+.+...+ .++.++..|+.+.
T Consensus 6 ~k~vlVTGa-s~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 67 (322)
T PRK07453 6 KGTVIITGA-SSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP-DSYTIIHIDLGDL 67 (322)
T ss_pred CCEEEEEcC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC-CceEEEEecCCCH
Confidence 456777775 5667777665432 11579999988877665555443221 3588888887654
No 396
>PRK06198 short chain dehydrogenase; Provisional
Probab=40.86 E-value=1.4e+02 Score=24.39 Aligned_cols=60 Identities=7% Similarity=-0.022 Sum_probs=37.3
Q ss_pred CCcEEEEeccccHHHHHHHHHCCC-Ccc-EEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPD-SGN-YLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~-~~~-ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++.+|=.|. +|.++..+++..-. ... |+.++.+++.+......+.+.+ .++.++..|+.+
T Consensus 6 ~k~vlItGa-~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 67 (260)
T PRK06198 6 GKVALVTGG-TQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALG-AKAVFVQADLSD 67 (260)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 457887885 55577777665421 145 9999988776654444443322 247777888764
No 397
>PRK07832 short chain dehydrogenase; Provisional
Probab=40.83 E-value=95 Score=25.94 Aligned_cols=57 Identities=7% Similarity=-0.105 Sum_probs=34.1
Q ss_pred EEEEeccccHHHHHHHHHCC--CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 128 MVDIGSGSGRFLIWLARRNP--DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~~p--~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+|=.|. +|.++..+++..- . .+|+.++.+++.++...+.+...+-..+.++.+|+.+
T Consensus 3 vlItGa-s~giG~~la~~la~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 61 (272)
T PRK07832 3 CFVTGA-ASGIGRATALRLAAQG-AELFLTDRDADGLAQTVADARALGGTVPEHRALDISD 61 (272)
T ss_pred EEEeCC-CCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC
Confidence 444554 4566666655432 3 5788999888877666655554442234556677654
No 398
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.77 E-value=98 Score=28.04 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=44.4
Q ss_pred CCCcEEEEeccccH---HHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGR---FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~---~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.+..||==|.|.|. ++..+|++. ..++-.|++.+..+...+.+++.| .++....|+.+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg---~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~ 98 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG---AKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDR 98 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC---CeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCH
Confidence 45678887888773 445555554 458899999999999999988775 688888888654
No 399
>PRK07890 short chain dehydrogenase; Provisional
Probab=39.91 E-value=1.8e+02 Score=23.70 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=39.5
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
.++|=.|. +|.++..+|+.+- +..+|+.++.+++.++...+.+...+ .++.++..|+.+
T Consensus 6 k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 65 (258)
T PRK07890 6 KVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITD 65 (258)
T ss_pred CEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCC
Confidence 46776665 6667777665432 11579999999887766666655444 357888888764
No 400
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=39.75 E-value=1.3e+02 Score=24.77 Aligned_cols=56 Identities=9% Similarity=0.049 Sum_probs=37.1
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..+|=.| |+|.++..+++.+- .+.+|+.++.+.+.++...... + .++.++.+|+.+
T Consensus 7 ~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~ 63 (257)
T PRK07067 7 KVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G-PAAIAVSLDVTR 63 (257)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C-CceEEEEccCCC
Confidence 4677777 56777888876542 1157999999988765544332 2 357788888754
No 401
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.56 E-value=86 Score=27.06 Aligned_cols=42 Identities=12% Similarity=0.003 Sum_probs=27.9
Q ss_pred cEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHH
Q 029244 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWV 169 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~ 169 (196)
+|.=||+|.=...++..-.... ..|+.+|++++.++.+++++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHG-FDVTIYDISDEALEKAKERI 46 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHH
Confidence 5777888754333333222223 57999999999999887764
No 402
>PRK05866 short chain dehydrogenase; Provisional
Probab=39.46 E-value=1.6e+02 Score=25.28 Aligned_cols=61 Identities=8% Similarity=0.021 Sum_probs=40.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|=.|. +|.++..+++... ++.+|+.++.+++.++...+.+...+ ..+.++.+|+.+.
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~-~~~~~~~~Dl~d~ 101 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG-GDAMAVPCDLSDL 101 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 357888886 4566766665431 11579999999888776666655443 2477888887653
No 403
>PRK07806 short chain dehydrogenase; Provisional
Probab=39.40 E-value=1.5e+02 Score=23.99 Aligned_cols=59 Identities=7% Similarity=-0.126 Sum_probs=35.6
Q ss_pred CcEEEEeccccHHHHHHHHHC--CCCccEEEEecCH-HHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQ-KLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~-~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.++|-.|+ +|.++..+++.. .. .+|+++..+. +..+.....++..+ .++.++.+|+.+.
T Consensus 7 k~vlItGa-sggiG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 68 (248)
T PRK07806 7 KTALVTGS-SRGIGADTAKILAGAG-AHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDE 68 (248)
T ss_pred cEEEEECC-CCcHHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence 56888885 556777776543 23 5788888754 33444333343333 3577888887653
No 404
>PRK08303 short chain dehydrogenase; Provisional
Probab=38.62 E-value=1.3e+02 Score=26.19 Aligned_cols=61 Identities=5% Similarity=-0.157 Sum_probs=37.0
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCH----------HHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQ----------KLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~----------~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|-.|++. .++..+|+.+- .+.+|+.++.+. +.++...+.++..+ ..+.++.+|+.+.
T Consensus 8 ~k~~lITGgs~-GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~ 79 (305)
T PRK08303 8 GKVALVAGATR-GAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG-GRGIAVQVDHLVP 79 (305)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence 46788889654 47777776542 115788888763 34444444444433 2466778887653
No 405
>PRK08265 short chain dehydrogenase; Provisional
Probab=38.48 E-value=1.5e+02 Score=24.62 Aligned_cols=58 Identities=7% Similarity=-0.091 Sum_probs=36.3
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|=.|. +|.++..+++.+- ...+|+.++.+++.++...+.+ + .++.++.+|+.+.
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~ 64 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G-ERARFIATDITDD 64 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCH
Confidence 357777774 5667777665532 1157999999887554433322 2 3477888887653
No 406
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=38.45 E-value=1e+02 Score=26.45 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=37.3
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCC-CCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELAL-SNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl-~nI~f~~~Da~~L 187 (196)
+.+||=.| |+|.++..+++..- +...|+++..+.+............+. .+++++.+|+.+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~ 68 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDE 68 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCc
Confidence 45788888 57888888876542 115688877666543332222111122 3588888998764
No 407
>PRK08267 short chain dehydrogenase; Provisional
Probab=38.16 E-value=93 Score=25.60 Aligned_cols=57 Identities=7% Similarity=-0.131 Sum_probs=36.8
Q ss_pred cEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 127 LMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.+|=+|. +|.++..+++..- ...+|+.++.+++.++.....+. -.++.++.+|+.+.
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~ 60 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---AGNAWTGALDVTDR 60 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCceEEEEecCCCH
Confidence 4677775 4666666665432 11579999999887666544432 23588888888653
No 408
>PRK07063 short chain dehydrogenase; Provisional
Probab=37.49 E-value=1.9e+02 Score=23.75 Aligned_cols=62 Identities=10% Similarity=0.001 Sum_probs=41.5
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhC-CCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELA-LSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~g-l~nI~f~~~Da~~L 187 (196)
+..+|=.|++ |.++..+++.+- ...+|+.++.+++.++...+.+...+ -.++.++.+|+.+.
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 70 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDA 70 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCH
Confidence 4578888864 566666665432 11579999999988877776665421 13588888888653
No 409
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=37.22 E-value=91 Score=29.14 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=39.4
Q ss_pred CcEEEEeccccHHHHHHHHH---CCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccCc
Q 029244 126 PLMVDIGSGSGRFLIWLARR---NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNII 188 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~---~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L~ 188 (196)
.+||=||| |.++...|.. +.+ .+|+..|.+.+.++.+.... ..+++.++.|+.+.+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~----~~~v~~~~vD~~d~~ 60 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELI----GGKVEALQVDAADVD 60 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhc----cccceeEEecccChH
Confidence 46889999 5555555443 444 58999999999877766553 236888888887653
No 410
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=36.92 E-value=1.9e+02 Score=23.95 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=39.5
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.|++. .++..+++..- +..+|+.++.+++.++.....+...+ .++.++.+|+.+.
T Consensus 10 ~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 71 (265)
T PRK07097 10 GKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG-IEAHGYVCDVTDE 71 (265)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence 45688888754 44555554321 11579999999888777766665544 2578888888643
No 411
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.53 E-value=1.5e+02 Score=24.58 Aligned_cols=60 Identities=12% Similarity=-0.047 Sum_probs=35.0
Q ss_pred CCcEEEEecccc-HHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSG-RFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG-~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=.|.++| .++..+|+.+- ...+|+.++.+.+..+...+..++. ..+.++.+|+.+
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~ 71 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVRE 71 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCC
Confidence 467888898773 67777766542 1156888888765433333322222 234566777654
No 412
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=36.42 E-value=1.8e+02 Score=23.84 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=34.5
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+.+|=.|+ +|.++..+++.+- ...+|+.++.++. .....+.+...+ .++.++.+|+.+
T Consensus 9 k~vlVtGa-s~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~-~~~~~~~~D~~~ 67 (260)
T PRK12823 9 KVVVVTGA-AQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAG-GEALALTADLET 67 (260)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcC-CeEEEEEEeCCC
Confidence 56777785 5666666665432 1157999998864 333333333333 347778888765
No 413
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=36.17 E-value=63 Score=30.73 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=27.2
Q ss_pred cEEEEeccccHHHHH--HHHHCCCCccEEEEecCHHHHHHHH
Q 029244 127 LMVDIGSGSGRFLIW--LARRNPDSGNYLGLEIRQKLVKRAE 166 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~--LA~~~p~~~~ViGIDis~~ml~~A~ 166 (196)
+|.=||.|...+..+ ||+...+ .+|+|+|++++-++..+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g-~~V~gvD~~~~~v~~l~ 43 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPD-IEVVVVDISVPRIDAWN 43 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCC-CeEEEEECCHHHHHHHH
Confidence 466677777666555 4444334 57999999999987744
No 414
>PRK07478 short chain dehydrogenase; Provisional
Probab=36.05 E-value=2.1e+02 Score=23.35 Aligned_cols=60 Identities=7% Similarity=-0.081 Sum_probs=39.9
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
..+|=.|++ |.++..+++.+. ...+|+.++.+++.++...+.++..+ .++.++.+|+.+.
T Consensus 7 k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 67 (254)
T PRK07478 7 KVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG-GEAVALAGDVRDE 67 (254)
T ss_pred CEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence 467766664 556666665432 11579999999888777766666544 3578888887653
No 415
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=36.03 E-value=1.9e+02 Score=23.71 Aligned_cols=61 Identities=3% Similarity=-0.070 Sum_probs=37.1
Q ss_pred CCCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.+.++|=.|. +|.++..+++.+- ...+|+.++.+ +..+.+.+.+.+.+ .++.++.+|+.+.
T Consensus 14 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 75 (258)
T PRK06935 14 DGKVAIVTGG-NTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG-RKVTFVQVDLTKP 75 (258)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence 3467888887 4556666665431 11578888887 33444444444433 3588888888753
No 416
>PRK06114 short chain dehydrogenase; Provisional
Probab=35.98 E-value=2e+02 Score=23.62 Aligned_cols=60 Identities=5% Similarity=-0.041 Sum_probs=37.0
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHH-HHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQK-LVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~-ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++.+|=.| |+|.++..+|+..- ...+|+.++.+.+ .++...+.+...+ .++.++..|+.+
T Consensus 8 ~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 69 (254)
T PRK06114 8 GQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG-RRAIQIAADVTS 69 (254)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 45677777 56668877776542 1157999988653 3444444444433 357778888754
No 417
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=35.93 E-value=68 Score=26.31 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=19.1
Q ss_pred EEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHH
Q 029244 128 MVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAE 166 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~ 166 (196)
|-=||.| .+++.+|..+ .. .+|+|+|++++.++..+
T Consensus 3 I~ViGlG--yvGl~~A~~lA~~G-~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 3 IAVIGLG--YVGLPLAAALAEKG-HQVIGVDIDEEKVEALN 40 (185)
T ss_dssp EEEE--S--TTHHHHHHHHHHTT-SEEEEE-S-HHHHHHHH
T ss_pred EEEECCC--cchHHHHHHHHhCC-CEEEEEeCChHHHHHHh
Confidence 3445554 4444443322 22 57999999999887655
No 418
>PRK08628 short chain dehydrogenase; Provisional
Probab=35.87 E-value=1.8e+02 Score=23.83 Aligned_cols=59 Identities=5% Similarity=-0.061 Sum_probs=36.5
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=.|. +|.++..+|+.+- ...+|+.++.+++.. ...+.+...+ .++.++..|+.+
T Consensus 7 ~~~ilItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~-~~~~~~~~D~~~ 66 (258)
T PRK08628 7 DKVVIVTGG-ASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQ-PRAEFVQVDLTD 66 (258)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcC-CceEEEEccCCC
Confidence 356777775 5667777776542 115688888888766 3333333333 357888888765
No 419
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=35.72 E-value=1.8e+02 Score=23.94 Aligned_cols=57 Identities=9% Similarity=-0.046 Sum_probs=35.1
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=.|. +|.++..+++.+- ...+|+.++.+++.++...+.. + .++.++.+|+.+
T Consensus 6 ~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~ 63 (263)
T PRK06200 6 GQVALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---G-DHVLVVEGDVTS 63 (263)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCC
Confidence 357788885 4556666665431 1157999999987765443322 2 346777777654
No 420
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=35.67 E-value=2e+02 Score=23.91 Aligned_cols=60 Identities=12% Similarity=-0.012 Sum_probs=39.0
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.|.+ |.++..+++.+ .. .+|+.++.+++..+...+.+...+ .++.++.+|+.+.
T Consensus 10 ~k~vlVtGas-~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 71 (278)
T PRK08277 10 GKVAVITGGG-GVLGGAMAKELARAG-AKVAILDRNQEKAEAVVAEIKAAG-GEALAVKADVLDK 71 (278)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence 3567777764 45666665543 23 679999999887766655554433 3578888887653
No 421
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=35.58 E-value=1.5e+02 Score=25.90 Aligned_cols=61 Identities=8% Similarity=-0.104 Sum_probs=37.9
Q ss_pred CCCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.+.+||=.| |+|.++..+++..- ...+|++++.+.+.......... ...+++++.+|+.+.
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~ 70 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK--EGDRLRLFRADLQEE 70 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc--cCCeEEEEECCCCCH
Confidence 456788877 47888888887542 11579999887654332222211 124588888887653
No 422
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=35.47 E-value=1.7e+02 Score=24.14 Aligned_cols=59 Identities=8% Similarity=0.049 Sum_probs=35.3
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|-.|+ +|.++..+|+.+- ...+|+.++.+.. +...+.++..+ .++.++.+|+.+.
T Consensus 8 ~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~-~~~~~~~~Dl~~~ 67 (251)
T PRK12481 8 GKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG-RKFHFITADLIQQ 67 (251)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC-CeEEEEEeCCCCH
Confidence 467888885 5667777776532 1157888876542 22333333333 3578888887653
No 423
>PRK05855 short chain dehydrogenase; Validated
Probab=35.43 E-value=1.2e+02 Score=27.83 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=41.8
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.++|=+|. +|.++..+++... ...+|+.++.+.+.++...+.++..+. ++.++.+|+.+.
T Consensus 316 ~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~ 376 (582)
T PRK05855 316 KLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDA 376 (582)
T ss_pred CEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCH
Confidence 46776775 6777777776542 115799999998887776666655553 588888888654
No 424
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=35.17 E-value=25 Score=33.25 Aligned_cols=39 Identities=26% Similarity=0.243 Sum_probs=24.7
Q ss_pred CcEEEEeccccHHHHHHHHHCCC-CccEEEEecCHHHHHHHH
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAE 166 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~-~~~ViGIDis~~ml~~A~ 166 (196)
.+|-=|| -|++++.+|-.+.. +..|+|+||++..++..+
T Consensus 10 ~~I~ViG--LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln 49 (436)
T COG0677 10 ATIGVIG--LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN 49 (436)
T ss_pred eEEEEEc--cccccHHHHHHHHHcCCceEeEeCCHHHHHHHh
Confidence 3444454 55666665544321 157999999999887654
No 425
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=35.07 E-value=57 Score=27.85 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=41.5
Q ss_pred hhhHHHHccCCCCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHH
Q 029244 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWV 169 (196)
Q Consensus 113 l~~w~~~f~~~~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~ 169 (196)
+..|....-. .....+|||...|.|.-..|+...+ ..+++||.-.+|-...+-+.
T Consensus 69 mrhwivnhck-hdttyidiganvgtfcgiaarhitq-gkiiaiepltemensirmnv 123 (286)
T PF05575_consen 69 MRHWIVNHCK-HDTTYIDIGANVGTFCGIAARHITQ-GKIIAIEPLTEMENSIRMNV 123 (286)
T ss_pred hhHhhhhhcc-CCceEEEeccccccchhhhhhhccc-CceEEEechhhhhhheeeee
Confidence 4678665432 4468999999999999877877777 78999998888865554444
No 426
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=34.91 E-value=87 Score=28.97 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=35.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE 171 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~ 171 (196)
.+.+|+-||+|--+++..+++ .|. .|..||+++.-|...+-+++.
T Consensus 63 ~ghrivtigSGGcn~L~ylsr-~Pa--~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSR-APA--RIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCcEEEEecCCcchHHHHhhc-CCc--eeEEEeCCHHHHHHHHHHHHH
Confidence 346899999997767766665 565 699999999999888777664
No 427
>PRK09072 short chain dehydrogenase; Provisional
Probab=34.86 E-value=2.2e+02 Score=23.49 Aligned_cols=59 Identities=8% Similarity=-0.041 Sum_probs=38.2
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.|++ |.++..+++.. .. .+|++++.+++.++.....+ +.+ .++.++.+|+.+.
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~d~ 65 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAG-ARLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLTSE 65 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCCCH
Confidence 3567777764 55555555432 13 57999999988777665554 222 3588888888654
No 428
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.74 E-value=2e+02 Score=23.37 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=35.0
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCH-HHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQ-KLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~-~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+.+|=.| |+|.++..+++.+- ...+|+.++.+. +..+...+.++..+ .++.++.+|+.+
T Consensus 3 k~vlItG-~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 63 (256)
T PRK12745 3 PVALVTG-GRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALG-VEVIFFPADVAD 63 (256)
T ss_pred cEEEEeC-CCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcC-CceEEEEecCCC
Confidence 3566667 57778877776542 115688888653 33333333333323 358888888875
No 429
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=34.63 E-value=78 Score=26.76 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHCCCC-ccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 134 GSGRFLIWLARRNPDS-GNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 134 GsG~~~i~LA~~~p~~-~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
|-|.++..+|+...+. .+|+.||.+++.++...... -.++.+.+|+.+
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~-----~~~~~v~gd~t~ 55 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE-----LDTHVVIGDATD 55 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh-----cceEEEEecCCC
Confidence 4567777777654321 47999999999987743311 135666666654
No 430
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=34.03 E-value=1e+02 Score=27.37 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=30.6
Q ss_pred CCCcEEEEecc-ccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCG-sG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
.+..||=+|+| .|.+++.+|+...- .+|+++|.+++.++.+++
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 34567777875 36666777877643 369999999998877743
No 431
>PRK09242 tropinone reductase; Provisional
Probab=33.98 E-value=2.3e+02 Score=23.17 Aligned_cols=61 Identities=11% Similarity=-0.077 Sum_probs=39.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhC-CCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELA-LSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~g-l~nI~f~~~Da~~ 186 (196)
+..+|=.|+ +|.++..+++... ...+|+.++.+.+.++....++.... -.++.++.+|+.+
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSD 71 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC
Confidence 356777777 4556666665432 11579999999888777666665431 1357888888765
No 432
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.21 E-value=1.5e+02 Score=24.77 Aligned_cols=60 Identities=13% Similarity=-0.055 Sum_probs=34.6
Q ss_pred CCcEEEEeccc-cHHHHHHHHHCC-CCccEEEEecCH---HHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGS-GRFLIWLARRNP-DSGNYLGLEIRQ---KLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGs-G~~~i~LA~~~p-~~~~ViGIDis~---~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|=.|.++ +.++..+|+.+- ...+|+.++.+. +.++...+ +.+-.++.++..|+.+.
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~Dv~d~ 71 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELAD---TLEGQESLLLPCDVTSD 71 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHH---HcCCCceEEEecCCCCH
Confidence 46788889873 777777776542 115687776542 33332222 22113577778887643
No 433
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=33.06 E-value=1.1e+02 Score=26.93 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=30.5
Q ss_pred CCCcEEEEeccc-cHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCGs-G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
.+..||=+|+|. |..++.+|+...- ..|+++|.+++..+.+++
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 345677778753 6666777887643 359999999998877743
No 434
>PRK06182 short chain dehydrogenase; Validated
Probab=33.04 E-value=1.7e+02 Score=24.41 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=34.9
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+.+|=.|+ +|.++..+++.+- ...+|++++.+++.++... . .+++++.+|+.+.
T Consensus 4 k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~---~~~~~~~~Dv~~~ 58 (273)
T PRK06182 4 KVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S---LGVHPLSLDVTDE 58 (273)
T ss_pred CEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h---CCCeEEEeeCCCH
Confidence 56777784 5667888876542 2257999999887654321 1 2367778887653
No 435
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=33.04 E-value=1.1e+02 Score=24.72 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=26.3
Q ss_pred EEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHH
Q 029244 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE 171 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~ 171 (196)
|.=||+|+=.-.++..-...+ .+|+-+|.+++.++.+++.+++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAG-YEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCC-CcEEEEECChHHHHhhhhHHHH
Confidence 445677653322222222224 6899999999999999888765
No 436
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=32.76 E-value=1.1e+02 Score=26.29 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=30.5
Q ss_pred CCCcEEEEeccc-cHHHHHHHHHCCCCccEEEEecCHHHHHHHH
Q 029244 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166 (196)
Q Consensus 124 ~~~~ILDIGCGs-G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~ 166 (196)
.+..||-.|+|. |..++.+|+...- ..|++++.+++..+.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVAR 207 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHH
Confidence 345677788876 7778888887643 26999999888777544
No 437
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=32.50 E-value=23 Score=28.94 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=9.2
Q ss_pred CCCcEEEEeccc
Q 029244 124 TLPLMVDIGSGS 135 (196)
Q Consensus 124 ~~~~ILDIGCGs 135 (196)
....++|||+|.
T Consensus 82 ~~k~lVDIGTGY 93 (153)
T KOG3048|consen 82 NSKFLVDIGTGY 93 (153)
T ss_pred ccceeEeccCce
Confidence 346899999875
No 438
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=32.11 E-value=1.8e+02 Score=23.26 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=34.9
Q ss_pred cEEEEeccccHHHHHHHHHCC--CCccEEEEecCHHHHHHHHHHHHHhC--CCCeEEEEcccccC
Q 029244 127 LMVDIGSGSGRFLIWLARRNP--DSGNYLGLEIRQKLVKRAEFWVQELA--LSNIALTLISRKNI 187 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p--~~~~ViGIDis~~ml~~A~~~~~~~g--l~nI~f~~~Da~~L 187 (196)
++|=.| |+|.++..+|+.+- . .+|++++.++. +.+.+...... -.++.++..|+.+.
T Consensus 4 ~vlItG-~s~~iG~~la~~l~~~g-~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (245)
T PRK12824 4 IALVTG-AKRGIGSAIARELLNDG-YRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTDT 64 (245)
T ss_pred EEEEeC-CCchHHHHHHHHHHHcC-CEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCCH
Confidence 566667 57888888877542 3 57999988754 22332222211 12488888887753
No 439
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=32.08 E-value=95 Score=28.20 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=32.4
Q ss_pred ccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 133 SGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 133 CGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
||.|.++..+++... ....|+.+|.+++.++.+++. . ++.++.+|+.+
T Consensus 6 iG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~---~~~~~~gd~~~ 54 (453)
T PRK09496 6 VGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L---DVRTVVGNGSS 54 (453)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c---CEEEEEeCCCC
Confidence 355899988887532 115799999999987765532 1 36677777653
No 440
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=31.99 E-value=96 Score=26.75 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=30.1
Q ss_pred CCcEEEEecc-ccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 125 ~~~ILDIGCG-sG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
...+|=+|+| .|.+++.+|+...- ..|+++|.+++.++.|..
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATG 187 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhh
Confidence 4467777875 46777888887754 357788999888776653
No 441
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=31.82 E-value=97 Score=29.92 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=33.6
Q ss_pred CCCcEEEEeccc-cHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCGs-G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
.+.+|+=||+|. |..++..|+... +.|+++|++++.++.+++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 456899999996 666677777764 479999999998887765
No 442
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=31.77 E-value=1.2e+02 Score=25.01 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=30.6
Q ss_pred CCcEEEEeccc-cHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 125 LPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 125 ~~~ILDIGCGs-G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
+..+|=.|+|. |..++.+|+...- ..|++++.+++..+.+++
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEA 140 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHH
Confidence 45677678765 7777888887654 239999999888776554
No 443
>PRK05854 short chain dehydrogenase; Provisional
Probab=31.41 E-value=2.4e+02 Score=24.42 Aligned_cols=62 Identities=13% Similarity=0.028 Sum_probs=41.6
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhC-CCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELA-LSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~g-l~nI~f~~~Da~~L 187 (196)
+..+|=.|++ |.++..+|+..- ...+|+.+..+.+..+.+.+.+.+.. -.++.++.+|+.++
T Consensus 14 gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 14 GKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSL 77 (313)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCH
Confidence 4567777764 556666665432 11679999999888777776665432 23588899998764
No 444
>PRK05876 short chain dehydrogenase; Provisional
Probab=31.28 E-value=2.5e+02 Score=23.74 Aligned_cols=61 Identities=5% Similarity=-0.077 Sum_probs=39.9
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.|.+ |.++..+|+.+- ...+|+.++.+++.++...+.+...+ .++.++..|+.+.
T Consensus 6 ~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dv~d~ 67 (275)
T PRK05876 6 GRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG-FDVHGVMCDVRHR 67 (275)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEeCCCCCH
Confidence 3567777764 566666665431 11579999999887776666555444 2478888887653
No 445
>PRK05993 short chain dehydrogenase; Provisional
Probab=31.27 E-value=1.6e+02 Score=24.65 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=34.1
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+.||=.|+ +|.++..+|+.+. ...+|++++.+++.++... .. +++++.+|+.+
T Consensus 5 k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~----~~---~~~~~~~Dl~d 58 (277)
T PRK05993 5 RSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALE----AE---GLEAFQLDYAE 58 (277)
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HC---CceEEEccCCC
Confidence 46787886 5777777776542 1167999999887664332 11 36677777654
No 446
>PRK12743 oxidoreductase; Provisional
Probab=31.10 E-value=2.6e+02 Score=22.91 Aligned_cols=60 Identities=7% Similarity=-0.148 Sum_probs=36.8
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEe-cCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLE-IRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGID-is~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.++|=.|+ +|.++..+++.+- ...+|+.+. .+.+.++.....+...+ .++.++..|+.+.
T Consensus 3 k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 64 (256)
T PRK12743 3 QVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG-VRAEIRQLDLSDL 64 (256)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC-CceEEEEccCCCH
Confidence 35777785 5668888877542 114677764 35555555555554444 3588888887653
No 447
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=30.95 E-value=1.3e+02 Score=25.54 Aligned_cols=43 Identities=12% Similarity=-0.033 Sum_probs=29.0
Q ss_pred CCCcEEEEecc-ccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCG-sG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
.+..||=+|+| .|.+++.+|+...- ..|+++|.+++.++.+++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH
Confidence 34567777774 45555667776643 349999999888776654
No 448
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=30.88 E-value=2.5e+02 Score=22.65 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=36.0
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+.++|=.|++ |.++..+++.+- ...+|++++.+.. ..+.+.+++.+ .++.++..|+.+.
T Consensus 5 ~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~-~~~~~~~~D~~~~ 64 (248)
T TIGR01832 5 GKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALG-RRFLSLTADLSDI 64 (248)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcC-CceEEEECCCCCH
Confidence 4567777874 557777776542 1157999987652 33333343333 3578888887653
No 449
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=30.56 E-value=1.5e+02 Score=24.21 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=32.7
Q ss_pred EEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 128 MVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
||=+| |+|.++..+++.+. +..+|++++.+++.++.....+ + .++.++.+|+.+
T Consensus 3 vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~ 57 (248)
T PRK10538 3 VLVTG-ATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---G-DNLYIAQLDVRN 57 (248)
T ss_pred EEEEC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---c-cceEEEEecCCC
Confidence 34444 35667777776542 1157999999987655443322 2 247777888754
No 450
>PRK06139 short chain dehydrogenase; Provisional
Probab=30.44 E-value=2.3e+02 Score=25.09 Aligned_cols=60 Identities=8% Similarity=-0.026 Sum_probs=40.5
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=.|+ +|.++..+++.+. ...+|+.++.+++.++...+.++..+. ++.++..|+.+
T Consensus 7 ~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d 67 (330)
T PRK06139 7 GAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTD 67 (330)
T ss_pred CCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCC
Confidence 456777776 4556666665431 115799999999988877777765553 47777788764
No 451
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=30.22 E-value=1.3e+02 Score=27.88 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=35.1
Q ss_pred CCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHH
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWV 169 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~ 169 (196)
+..||--|||.|.++..||..++. +-|=|.|-=|+--..--+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~---~qGNEfSy~Mli~S~FiL 192 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFK---CQGNEFSYFMLICSSFIL 192 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccc---ccccHHHHHHHHHHHHHH
Confidence 568999999999999999999876 777799999986655444
No 452
>PRK12828 short chain dehydrogenase; Provisional
Probab=30.11 E-value=2.2e+02 Score=22.64 Aligned_cols=57 Identities=11% Similarity=-0.048 Sum_probs=33.4
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..+|=+| |+|.++..+++.+- +..+|++++.+++........+.. .++.++.+|+.+
T Consensus 8 k~vlItG-atg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~D~~~ 65 (239)
T PRK12828 8 KVVAITG-GFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA---DALRIGGIDLVD 65 (239)
T ss_pred CEEEEEC-CCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh---cCceEEEeecCC
Confidence 4566677 45777777776542 115799999877654433333322 235566666654
No 453
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=30.08 E-value=3e+02 Score=22.24 Aligned_cols=61 Identities=3% Similarity=-0.091 Sum_probs=36.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEec-CHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEI-RQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDi-s~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.| |+|.++..+++.+- ...+|+.+.. +++..+.....+...+ .++.++..|+.+.
T Consensus 6 ~~~~lItG-~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 68 (247)
T PRK12935 6 GKVAIVTG-GAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEG-HDVYAVQADVSKV 68 (247)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence 45788888 57888888887542 1146766543 4444443333343333 3588888887653
No 454
>PLN02740 Alcohol dehydrogenase-like
Probab=29.74 E-value=1.2e+02 Score=26.97 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=29.8
Q ss_pred CCCcEEEEecc-ccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCG-sG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
.+..||=+|+| .|..++.+|+...- .+|+++|.+++.++.+++
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHH
Confidence 34567777875 35555666776643 369999999998887754
No 455
>PRK12827 short chain dehydrogenase; Provisional
Probab=29.52 E-value=3e+02 Score=22.05 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=33.7
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEec----CHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEI----RQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDi----s~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
..+|=.| |+|.++..+|+..- ....|++++. +.+.++.........+ .++.++.+|+.+.
T Consensus 7 ~~ilItG-asg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 71 (249)
T PRK12827 7 RRVLITG-GSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAG-GKALGLAFDVRDF 71 (249)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 4677666 45767776665432 1146888764 3444443333333333 3578888887654
No 456
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=29.50 E-value=1.2e+02 Score=27.35 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=33.9
Q ss_pred CCCcEEEEeccccHHHH----HHHHHCCCCccEEEEecCHHHHHHHHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLI----WLARRNPDSGNYLGLEIRQKLVKRAEFWVQE 171 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i----~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~ 171 (196)
.....+|+|+|+-.=+. ++++..-- ..++.||++...++...+.+..
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~-~ryvpiDv~a~iL~~ta~ai~~ 128 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSL-LRYVPIDVSASILRATATAILR 128 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCc-ceeeeecccHHHHHHHHHHHHH
Confidence 34689999999876554 44554434 5799999999999776665543
No 457
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=29.28 E-value=2.4e+02 Score=23.16 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=35.2
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=.|+ +|.++..+++.+- ...+|++++.+.. +...+.+.+.+ .++.++..|+.+
T Consensus 10 ~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~-~~~~~~~~Dl~~ 68 (253)
T PRK08993 10 GKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG-RRFLSLTADLRK 68 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC-CeEEEEECCCCC
Confidence 357787886 6778888877652 1257898887643 22223333333 247778888764
No 458
>PRK06179 short chain dehydrogenase; Provisional
Probab=29.17 E-value=1.4e+02 Score=24.75 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=32.5
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..+|=.| |+|.++..+++.+- ...+|++++.+++..+ ...+++++.+|+.+
T Consensus 5 ~~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~D~~d 56 (270)
T PRK06179 5 KVALVTG-ASSGIGRATAEKLARAGYRVFGTSRNPARAA---------PIPGVELLELDVTD 56 (270)
T ss_pred CEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCChhhcc---------ccCCCeeEEeecCC
Confidence 4678888 46778888776532 1157999988765432 12356777777754
No 459
>PRK08589 short chain dehydrogenase; Validated
Probab=29.14 E-value=2.7e+02 Score=23.28 Aligned_cols=60 Identities=10% Similarity=-0.028 Sum_probs=36.5
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|=.|++ |.++..+++.+- ...+|+.++.+ +.++...+.+.+.+ .++.++..|+.+.
T Consensus 6 ~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 66 (272)
T PRK08589 6 NKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG-GKAKAYHVDISDE 66 (272)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC-CeEEEEEeecCCH
Confidence 3567767764 456666665431 11679999998 55555555554433 3577888887643
No 460
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.02 E-value=53 Score=31.00 Aligned_cols=46 Identities=26% Similarity=0.253 Sum_probs=33.5
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWV 169 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~ 169 (196)
....|||+|.|.|.-+.++-..+|+=..++-+|.|+..-+..-.-.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~ 158 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLA 158 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHH
Confidence 3457999999999998888888886234777788876655544433
No 461
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.02 E-value=28 Score=29.41 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=37.3
Q ss_pred CCcEEEEeccc-cHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHh
Q 029244 125 LPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL 172 (196)
Q Consensus 125 ~~~ILDIGCGs-G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~ 172 (196)
+..|||+|-|. |.-++.+|...|+ ..|.-.|-+++.++..++-...+
T Consensus 30 g~~ilelgggft~laglmia~~a~~-~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPD-SSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCC-ceEEEecCCHHHHHHHHHHHhcc
Confidence 35899999995 5555777888888 78999999999998887765443
No 462
>PRK07041 short chain dehydrogenase; Provisional
Probab=28.27 E-value=2.3e+02 Score=22.62 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 134 GSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 134 GsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
|+|.++..+++.+- .+.+|++++.+++.++.....+++ + .+++++.+|+.+.
T Consensus 5 as~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~~ 57 (230)
T PRK07041 5 GSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-G-APVRTAALDITDE 57 (230)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CceEEEEccCCCH
Confidence 45666666665531 115799999987766554444331 2 3578888887643
No 463
>PRK08219 short chain dehydrogenase; Provisional
Probab=28.25 E-value=1.2e+02 Score=24.08 Aligned_cols=54 Identities=11% Similarity=-0.063 Sum_probs=33.6
Q ss_pred cEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++|=.|+ +|.++..+++..-+..+|++++.+++.++...+. ..+++++.+|+.+
T Consensus 5 ~vlVtG~-~g~iG~~l~~~l~~~~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~D~~~ 58 (227)
T PRK08219 5 TALITGA-SRGIGAAIARELAPTHTLLLGGRPAERLDELAAE-----LPGATPFPVDLTD 58 (227)
T ss_pred EEEEecC-CcHHHHHHHHHHHhhCCEEEEeCCHHHHHHHHHH-----hccceEEecCCCC
Confidence 5676676 5667766665432114699999987765433322 1347788888865
No 464
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=28.09 E-value=1.9e+02 Score=25.94 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=31.7
Q ss_pred EEEEeccccHHHHHHHHH---CCCCc-cEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 128 MVDIGSGSGRFLIWLARR---NPDSG-NYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 128 ILDIGCGsG~~~i~LA~~---~p~~~-~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
|+=||+ |..+...++. .++ . +|+..|.+.+.++...+.+ ...++.++..|+.+.
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~-~~~v~va~r~~~~~~~~~~~~---~~~~~~~~~~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGP-FEEVTVADRNPEKAERLAEKL---LGDRVEAVQVDVNDP 58 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTC-E-EEEEEESSHHHHHHHHT-----TTTTEEEEE--TTTH
T ss_pred CEEEcC--cHHHHHHHHHHhcCCC-CCcEEEEECCHHHHHHHHhhc---cccceeEEEEecCCH
Confidence 456787 5555554433 333 2 7999999999876655443 335799999998754
No 465
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=28.00 E-value=1.4e+02 Score=27.25 Aligned_cols=47 Identities=21% Similarity=0.201 Sum_probs=35.7
Q ss_pred CCCcEEEEeccccHHHH----HHHHHC---CCCccEEEEec----CHHHHHHHHHHHHH
Q 029244 124 TLPLMVDIGSGSGRFLI----WLARRN---PDSGNYLGLEI----RQKLVKRAEFWVQE 171 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i----~LA~~~---p~~~~ViGIDi----s~~ml~~A~~~~~~ 171 (196)
....|+|+|-|.|.--. .||.+. |. .+||||+. +..-++.+.+++.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~-LrIT~i~~~~~~~~~~l~~~g~rL~~ 167 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPS-LRITGIGPPNSGSADELQETGRRLAE 167 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCe-EEEEeccCCCCCcHHHHHHHHHHHHH
Confidence 55789999999997544 445442 43 78999999 88888888887654
No 466
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=27.93 E-value=2.7e+02 Score=23.05 Aligned_cols=61 Identities=8% Similarity=-0.125 Sum_probs=34.2
Q ss_pred CcEEEEeccccHHHHHHHHHCC-CCccEEEEe-cCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLE-IRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGID-is~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+.+|=.|++.| ++..+++.+. ...+|+.++ .+++.++...+.+....-..+.++.+|+.+.
T Consensus 2 ~~~lITGas~g-IG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~ 64 (267)
T TIGR02685 2 PAAVVTGAAKR-IGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNS 64 (267)
T ss_pred CEEEEeCCCCc-HHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCc
Confidence 46777787644 7777776542 115677764 3445554444444322222466677887764
No 467
>PRK06720 hypothetical protein; Provisional
Probab=27.79 E-value=3.2e+02 Score=21.84 Aligned_cols=59 Identities=10% Similarity=-0.036 Sum_probs=34.9
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++.+|-.|.|. .++..++..+ .. .+|+.+|.+.+.++.+.+.+...+ ..+.++..|+.+
T Consensus 16 gk~~lVTGa~~-GIG~aia~~l~~~G-~~V~l~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 76 (169)
T PRK06720 16 GKVAIVTGGGI-GIGRNTALLLAKQG-AKVIVTDIDQESGQATVEEITNLG-GEALFVSYDMEK 76 (169)
T ss_pred CCEEEEecCCC-hHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 35677777654 3444444322 12 568888988887766655555434 236677777754
No 468
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=27.60 E-value=1.7e+02 Score=25.07 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=29.3
Q ss_pred CCcEEEEecc-ccHHHHHHHHHCCCCccEEEEecCHHHHHHHH
Q 029244 125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166 (196)
Q Consensus 125 ~~~ILDIGCG-sG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~ 166 (196)
+..||..|+| .|..++.+|+.... ..+++++.+++..+.++
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAK 209 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHH
Confidence 4566667775 47788888888753 36899988887766554
No 469
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=27.34 E-value=2.1e+02 Score=23.28 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=32.0
Q ss_pred ecc-ccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 132 GSG-SGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 132 GCG-sG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
|+| ++.++..+|+.+- +..+|+.++.+.+.++.+.+.+.+..- ..++..|+.+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~--~~~~~~D~~~ 55 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYG--AEVIQCDLSD 55 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT--SEEEESCTTS
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC--CceEeecCcc
Confidence 344 3455555555431 126799999999987666666554332 3357777753
No 470
>PRK06101 short chain dehydrogenase; Provisional
Probab=26.56 E-value=1.9e+02 Score=23.64 Aligned_cols=55 Identities=11% Similarity=0.001 Sum_probs=33.9
Q ss_pred cEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 127 LMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.+|=.|. +|.++..+++..- .+.+|+.++.+++.++.... . ..++.++.+|+.+.
T Consensus 3 ~vlItGa-s~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~----~-~~~~~~~~~D~~~~ 58 (240)
T PRK06101 3 AVLITGA-TSGIGKQLALDYAKQGWQVIACGRNQSVLDELHT----Q-SANIFTLAFDVTDH 58 (240)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----h-cCCCeEEEeeCCCH
Confidence 3555554 6777777776542 11679999998876543322 1 23577888887653
No 471
>PRK06924 short chain dehydrogenase; Provisional
Probab=26.45 E-value=1.7e+02 Score=23.75 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=34.0
Q ss_pred cEEEEeccccHHHHHHHHHCC-CCccEEEEecCH-HHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 127 LMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQ-KLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~-~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
.+|=+| |+|.++..+++.+. ++.+|++++.++ +.++... +..+ .+++++.+|+.+.
T Consensus 3 ~vlItG-asggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~---~~~~-~~~~~~~~D~~~~ 60 (251)
T PRK06924 3 YVIITG-TSQGLGEAIANQLLEKGTHVISISRTENKELTKLA---EQYN-SNLTFHSLDLQDV 60 (251)
T ss_pred EEEEec-CCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHH---hccC-CceEEEEecCCCH
Confidence 466666 57788888877652 115799998876 3332211 1112 3578888888653
No 472
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=26.33 E-value=2.8e+02 Score=22.83 Aligned_cols=56 Identities=7% Similarity=-0.054 Sum_probs=34.5
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=.|. +|.++..+++.+ .. .+|+.++.+.+.++.... ..+ .++.++.+|+.+
T Consensus 5 ~k~vlItGa-s~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~l~~---~~~-~~~~~~~~D~~~ 62 (262)
T TIGR03325 5 GEVVLVTGG-ASGLGRAIVDRFVAEG-ARVAVLDKSAAGLQELEA---AHG-DAVVGVEGDVRS 62 (262)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHh---hcC-CceEEEEeccCC
Confidence 356777786 456777776554 23 679999998876544322 112 346777777654
No 473
>PRK08278 short chain dehydrogenase; Provisional
Probab=26.30 E-value=2.8e+02 Score=23.22 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=35.9
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHH-------HHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKL-------VKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~m-------l~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.|+ +|.++..+++..- ...+|+.++.+.+. ++...+.+...+ .++.++.+|+.+.
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~D~~~~ 74 (273)
T PRK08278 6 GKTLFITGA-SRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG-GQALPLVGDVRDE 74 (273)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcC-CceEEEEecCCCH
Confidence 356777777 5566766665432 11579999876542 333333343333 3578888887653
No 474
>PRK08309 short chain dehydrogenase; Provisional
Probab=26.23 E-value=3.1e+02 Score=22.16 Aligned_cols=56 Identities=9% Similarity=-0.016 Sum_probs=31.3
Q ss_pred cEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 127 LMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 127 ~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+++=+|. +|... .+++..- ...+|+.++.+++..+....... ...++.++.+|+.+
T Consensus 2 ~vlVtGG-tG~gg-~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~--~~~~i~~~~~Dv~d 58 (177)
T PRK08309 2 HALVIGG-TGMLK-RVSLWLCEKGFHVSVIARREVKLENVKREST--TPESITPLPLDYHD 58 (177)
T ss_pred EEEEECc-CHHHH-HHHHHHHHCcCEEEEEECCHHHHHHHHHHhh--cCCcEEEEEccCCC
Confidence 3556663 45433 3544321 11578888988876554443332 12457888888764
No 475
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=25.95 E-value=1.7e+02 Score=25.88 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=28.4
Q ss_pred CcEEEEecc-ccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 126 PLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 126 ~~ILDIGCG-sG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
..||=+|+| .|.+++.+|+...- ..|+++|.+++.++.+++
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALARE 234 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH
Confidence 455557865 35566667776643 269999999998877753
No 476
>PRK06701 short chain dehydrogenase; Provisional
Probab=25.86 E-value=2.6e+02 Score=23.86 Aligned_cols=60 Identities=7% Similarity=-0.075 Sum_probs=35.9
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCH-HHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQ-KLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~-~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=.|. +|.++..+++.+- ...+|+.++.+. +.++.....++..+ .++.++.+|+.+
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 107 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSD 107 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 457888885 6666777766542 115688888774 33333333443333 357788888765
No 477
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=25.82 E-value=1.4e+02 Score=25.73 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=23.6
Q ss_pred EEEEeccc--cHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 128 MVDIGSGS--GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 128 ILDIGCGs--G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
|.=||+|. |.++..|.+. . ..|+++|.+++.++.+.+
T Consensus 3 I~IIG~G~mG~sla~~L~~~--g-~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL--G-HTVYGVSRRESTCERAIE 41 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC--C-CEEEEEECCHHHHHHHHH
Confidence 55567654 3344444433 3 469999999998877654
No 478
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=25.79 E-value=1.8e+02 Score=25.44 Aligned_cols=58 Identities=14% Similarity=0.061 Sum_probs=34.4
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+.+||=.| |+|.++..+++.. .. .+|++++.++........... .+ .++.++.+|+.+
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~Dl~~ 63 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELG-AEVYGYSLDPPTSPNLFELLN-LA-KKIEDHFGDIRD 63 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCC-CEEEEEeCCCccchhHHHHHh-hc-CCceEEEccCCC
Confidence 35677777 5777777777654 22 579999977654322222111 11 247777888764
No 479
>PRK08264 short chain dehydrogenase; Validated
Probab=25.64 E-value=2.5e+02 Score=22.56 Aligned_cols=53 Identities=6% Similarity=-0.011 Sum_probs=34.7
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCc-cEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSG-NYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~-~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=+| |+|.++..+|+.+- .+. +|+.++.+++.++. .+ .++.++.+|+.+
T Consensus 6 ~~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~~-~~~~~~~~D~~~ 60 (238)
T PRK08264 6 GKVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------LG-PRVVPLQLDVTD 60 (238)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------cC-CceEEEEecCCC
Confidence 35678788 47778877776542 114 79999988765432 12 357888888765
No 480
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.50 E-value=2.2e+02 Score=24.86 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=29.4
Q ss_pred CcEEEEeccc--cHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHH
Q 029244 126 PLMVDIGSGS--GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQ 170 (196)
Q Consensus 126 ~~ILDIGCGs--G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~ 170 (196)
.+|-=||+|+ +.++..++.. . ..|+.+|++++.++.+.+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G-~~V~l~d~~~~~~~~~~~~i~ 49 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--G-VDVLVFETTEELATAGRNRIE 49 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHH
Confidence 3677788873 3333344433 3 579999999999999877754
No 481
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=25.40 E-value=1.8e+02 Score=25.35 Aligned_cols=42 Identities=12% Similarity=-0.107 Sum_probs=30.1
Q ss_pred CCCcEEEEecc-ccHHHHHHHHHCCCCccEEEEecCHHHHHHHHH
Q 029244 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF 167 (196)
Q Consensus 124 ~~~~ILDIGCG-sG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~ 167 (196)
.+..||=.|+| .|.+++.+|+... .+|++++.+++-++.+++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence 34578878865 5556677777764 469999999988766654
No 482
>PRK07201 short chain dehydrogenase; Provisional
Probab=25.28 E-value=2.2e+02 Score=27.14 Aligned_cols=61 Identities=5% Similarity=-0.106 Sum_probs=41.3
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|=.|. +|.++..+++.+- .+.+|+.++.+++.++...+.+...+ .++.++.+|+.+.
T Consensus 371 ~k~vlItGa-s~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~ 432 (657)
T PRK07201 371 GKVVLITGA-SSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG-GTAHAYTCDLTDS 432 (657)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEecCCCH
Confidence 346776675 5677777776531 11579999999988777666665444 3588888887653
No 483
>PRK06123 short chain dehydrogenase; Provisional
Probab=25.25 E-value=3.1e+02 Score=22.10 Aligned_cols=59 Identities=7% Similarity=-0.091 Sum_probs=31.0
Q ss_pred CcEEEEeccccHHHHHHHHHCCC-CccEEEEec-CHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEI-RQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~-~~~ViGIDi-s~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..+|=.| |+|.++..+++.+-+ ...|+.++. +++..+.....+...+ .++.++..|+.+
T Consensus 3 ~~~lVtG-~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 63 (248)
T PRK06123 3 KVMIITG-ASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQG-GEALAVAADVAD 63 (248)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCC-CcEEEEEeccCC
Confidence 3577777 467777777655421 134655553 3444443333333333 246677777764
No 484
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=25.14 E-value=2e+02 Score=24.43 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=31.5
Q ss_pred CCCcEEEEecc-ccHHHHHHHHHCCCCccEEEEecCHHHHHHHH
Q 029244 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166 (196)
Q Consensus 124 ~~~~ILDIGCG-sG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~ 166 (196)
.+..||-+|+| .|..++.+|+... ..|++++.+++.++.++
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELAR 203 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 34577778887 7888888888764 47999999998877763
No 485
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=24.87 E-value=2.1e+02 Score=24.71 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=38.0
Q ss_pred CCCcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHHHhCC---CCeEEEEcccc
Q 029244 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL---SNIALTLISRK 185 (196)
Q Consensus 124 ~~~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~~~gl---~nI~f~~~Da~ 185 (196)
+...||.||||.=.-...+... ++ ..++-||. +++++.-++.+.+.+. .+.+++..|+.
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~-~~-~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWP-DG-TRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCC-CC-CeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 3457999999998888777422 23 45665553 3455555555555432 46889988875
No 486
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=24.49 E-value=1.9e+02 Score=25.27 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=28.6
Q ss_pred CCCcEEEEeccc-cHHHHHHHHHCCCCccEEEEec---CHHHHHHHH
Q 029244 124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEI---RQKLVKRAE 166 (196)
Q Consensus 124 ~~~~ILDIGCGs-G~~~i~LA~~~p~~~~ViGIDi---s~~ml~~A~ 166 (196)
.+..||=+|+|. |.+++.+|+... .+|++++. +++-++.++
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHH
Confidence 345778788864 667777888764 47999987 566665554
No 487
>COG3146 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.06 E-value=30 Score=32.06 Aligned_cols=13 Identities=54% Similarity=1.265 Sum_probs=10.7
Q ss_pred Cccchhhh--hhhhc
Q 029244 3 ASHLCLHY--CYYQS 15 (196)
Q Consensus 3 ~~~~~~~~--~~~~~ 15 (196)
+.|-|||+ ||||.
T Consensus 299 ed~p~LHFE~CYyQ~ 313 (387)
T COG3146 299 EDHPFLHFEVCYYQA 313 (387)
T ss_pred ccCCcchhHHHHhhH
Confidence 35889997 99995
No 488
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.01 E-value=2.2e+02 Score=24.43 Aligned_cols=44 Identities=11% Similarity=-0.089 Sum_probs=27.8
Q ss_pred CcEEEEeccccHHHHHHHHHCCCCccEEEEecCHHHHHHHHHHHH
Q 029244 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQ 170 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~~~~~ 170 (196)
.+|.=||+|.=...++..-.... ..|+.+|.+++.++.+.+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~ 48 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG-YDVLLNDVSADRLEAGLATIN 48 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHH
Confidence 35777888754433333222223 579999999999988765443
No 489
>PLN02827 Alcohol dehydrogenase-like
Probab=23.65 E-value=1.9e+02 Score=25.90 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCCcEEEEecc-ccHHHHHHHHHCCCCccEEEEecCHHHHHHHH
Q 029244 124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166 (196)
Q Consensus 124 ~~~~ILDIGCG-sG~~~i~LA~~~p~~~~ViGIDis~~ml~~A~ 166 (196)
.+..||=+|+| .|.+++.+|+...- ..|+++|.+++..+.++
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHH
Confidence 34577777764 35555667776643 35999999988777664
No 490
>PRK05872 short chain dehydrogenase; Provisional
Probab=23.58 E-value=3.2e+02 Score=23.24 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=35.5
Q ss_pred CCcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|=.|. +|.++..+++.+ .. .+|+.++.+++.++...+.+.. + ..+..+.+|+.+
T Consensus 9 gk~vlItGa-s~gIG~~ia~~l~~~G-~~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d 68 (296)
T PRK05872 9 GKVVVVTGA-ARGIGAELARRLHARG-AKLALVDLEEAELAALAAELGG-D-DRVLTVVADVTD 68 (296)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCC
Confidence 457777775 556666666654 23 5799999998876655444321 1 235555677654
No 491
>PRK08507 prephenate dehydrogenase; Validated
Probab=23.27 E-value=1.7e+02 Score=24.92 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=22.4
Q ss_pred EEEEeccc--cHHHHHHHHHCCCCccEEEEecCHHHHHHHH
Q 029244 128 MVDIGSGS--GRFLIWLARRNPDSGNYLGLEIRQKLVKRAE 166 (196)
Q Consensus 128 ILDIGCGs--G~~~i~LA~~~p~~~~ViGIDis~~ml~~A~ 166 (196)
|.=||+|. |.++..|.+.... ..|+++|.+++.++.+.
T Consensus 3 I~iIG~G~mG~sla~~l~~~g~~-~~v~~~d~~~~~~~~~~ 42 (275)
T PRK08507 3 IGIIGLGLMGGSLGLALKEKGLI-SKVYGYDHNELHLKKAL 42 (275)
T ss_pred EEEEccCHHHHHHHHHHHhcCCC-CEEEEEcCCHHHHHHHH
Confidence 45566654 3333444433222 36999999998876654
No 492
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.05 E-value=4e+02 Score=22.57 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=34.2
Q ss_pred CCcEEEEeccc-cHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGS-GRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGs-G~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
++.+|=.|.++ +.++..+|+.+- ++.+|+.++.+.+..+...+..++.+. . .++.+|+.+.
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~ 67 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKP 67 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCH
Confidence 35778888763 566666665432 125788888875433333333233332 2 4667777654
No 493
>PLN02540 methylenetetrahydrofolate reductase
Probab=22.86 E-value=1.6e+02 Score=29.03 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=48.5
Q ss_pred CCCcEEEEeccccH----HHHHHHHHCCCC------ccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 029244 124 TLPLMVDIGSGSGR----FLIWLARRNPDS------GNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRK 185 (196)
Q Consensus 124 ~~~~ILDIGCGsG~----~~i~LA~~~p~~------~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~ 185 (196)
-+|..++|--|.|. .++.+|....+. .++++.|.+...++.+...+.+.|+.||-.+.||.-
T Consensus 27 ~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp 98 (565)
T PLN02540 27 HGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPP 98 (565)
T ss_pred cCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 46889999888884 344555432110 458999999999999999999999999999999975
No 494
>PRK07985 oxidoreductase; Provisional
Probab=22.82 E-value=3.8e+02 Score=22.86 Aligned_cols=60 Identities=7% Similarity=-0.100 Sum_probs=34.5
Q ss_pred CCcEEEEeccccHHHHHHHHHCC-CCccEEEEecC--HHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIR--QKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p-~~~~ViGIDis--~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
+..+|-.|. +|.++..+|+.+- ...+|+.++.+ .+..+...+.+.+.+ .++.++.+|+.+
T Consensus 49 ~k~vlITGa-s~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 111 (294)
T PRK07985 49 DRKALVTGG-DSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG-RKAVLLPGDLSD 111 (294)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC-CeEEEEEccCCC
Confidence 357888885 5667767665432 11567777654 233333333333333 347777888765
No 495
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=22.76 E-value=1.6e+02 Score=25.82 Aligned_cols=60 Identities=13% Similarity=-0.043 Sum_probs=36.3
Q ss_pred CcEEEEeccccHHHHHHHHHCC--CCccEEEEecCHHHHHHHHHHH----HHhCCCCeEEEEcccccC
Q 029244 126 PLMVDIGSGSGRFLIWLARRNP--DSGNYLGLEIRQKLVKRAEFWV----QELALSNIALTLISRKNI 187 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~p--~~~~ViGIDis~~ml~~A~~~~----~~~gl~nI~f~~~Da~~L 187 (196)
.+||=.|. +|.++..|++..- . ..|+++|............. ......++.++.+|+.+.
T Consensus 16 ~~vlVtGa-tGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (348)
T PRK15181 16 KRWLITGV-AGFIGSGLLEELLFLN-QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKF 81 (348)
T ss_pred CEEEEECC-ccHHHHHHHHHHHHCC-CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCH
Confidence 56887774 8888888876642 3 47999997543221111111 111224588999998764
No 496
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.71 E-value=3.4e+02 Score=22.37 Aligned_cols=58 Identities=12% Similarity=0.001 Sum_probs=34.1
Q ss_pred CCcEEEEeccc-cHHHHHHHHHCC-CCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 125 LPLMVDIGSGS-GRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 125 ~~~ILDIGCGs-G~~~i~LA~~~p-~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
++.+|-.|.++ +.++..+|+.+- ...+|+.++.+.+..+. +++..-.++.++..|+.+
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~ 66 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKS----LQKLVDEEDLLVECDVAS 66 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHH----HHhhccCceeEEeCCCCC
Confidence 45788888774 567777776542 22578888876432222 222111347778888764
No 497
>PRK07825 short chain dehydrogenase; Provisional
Probab=22.57 E-value=2.3e+02 Score=23.46 Aligned_cols=54 Identities=9% Similarity=-0.023 Sum_probs=34.4
Q ss_pred CcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..+|=.|++ |.++..+++.. .. .+|+.++.+++.++...+.+ .++.++.+|+.+
T Consensus 6 ~~ilVtGas-ggiG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~D~~~ 61 (273)
T PRK07825 6 KVVAITGGA-RGIGLATARALAALG-ARVAIGDLDEALAKETAAEL-----GLVVGGPLDVTD 61 (273)
T ss_pred CEEEEeCCC-chHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh-----ccceEEEccCCC
Confidence 467777874 55666666543 23 57899999887765544332 246677777664
No 498
>PRK12744 short chain dehydrogenase; Provisional
Probab=22.47 E-value=4.3e+02 Score=21.56 Aligned_cols=61 Identities=7% Similarity=-0.020 Sum_probs=33.8
Q ss_pred CCcEEEEeccccHHHHHHHHHCCC-CccEEEEecC----HHHHHHHHHHHHHhCCCCeEEEEcccccC
Q 029244 125 LPLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIR----QKLVKRAEFWVQELALSNIALTLISRKNI 187 (196)
Q Consensus 125 ~~~ILDIGCGsG~~~i~LA~~~p~-~~~ViGIDis----~~ml~~A~~~~~~~gl~nI~f~~~Da~~L 187 (196)
+..+|=.|+ +|.++..+|+..-+ ..+|+.++.+ .+..+...+.+...+ .++.++..|+.+.
T Consensus 8 ~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 73 (257)
T PRK12744 8 GKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAG-AKAVAFQADLTTA 73 (257)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhC-CcEEEEecCcCCH
Confidence 356787784 66688787765431 1456666543 233333333333333 2577888887643
No 499
>PRK08263 short chain dehydrogenase; Provisional
Probab=22.28 E-value=4.1e+02 Score=22.06 Aligned_cols=55 Identities=5% Similarity=-0.103 Sum_probs=35.2
Q ss_pred CcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..||=.| |+|.++..+++.. .. ..|+.++.+++.++...... -..+.++.+|+.+
T Consensus 4 k~vlItG-asg~iG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~ 60 (275)
T PRK08263 4 KVWFITG-ASRGFGRAWTEAALERG-DRVVATARDTATLADLAEKY----GDRLLPLALDVTD 60 (275)
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHhc----cCCeeEEEccCCC
Confidence 4577777 4777777777654 23 57999999887765443321 1246677777754
No 500
>PRK06180 short chain dehydrogenase; Provisional
Probab=22.14 E-value=4.1e+02 Score=22.12 Aligned_cols=55 Identities=16% Similarity=0.053 Sum_probs=34.7
Q ss_pred CcEEEEeccccHHHHHHHHHC--CCCccEEEEecCHHHHHHHHHHHHHhCCCCeEEEEccccc
Q 029244 126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIALTLISRKN 186 (196)
Q Consensus 126 ~~ILDIGCGsG~~~i~LA~~~--p~~~~ViGIDis~~ml~~A~~~~~~~gl~nI~f~~~Da~~ 186 (196)
..+|=.|+ +|.++..+++.. .. .+|++++.+++.++.... ..-.++.++.+|+.+
T Consensus 5 ~~vlVtGa-sggiG~~la~~l~~~G-~~V~~~~r~~~~~~~l~~----~~~~~~~~~~~D~~d 61 (277)
T PRK06180 5 KTWLITGV-SSGFGRALAQAALAAG-HRVVGTVRSEAARADFEA----LHPDRALARLLDVTD 61 (277)
T ss_pred CEEEEecC-CChHHHHHHHHHHhCc-CEEEEEeCCHHHHHHHHh----hcCCCeeEEEccCCC
Confidence 46787787 456676766553 23 579999998876543222 122357777777754
Done!