BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029245
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UZD|C Chain C, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|F Chain F, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|I Chain I, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|J Chain J, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|M Chain M, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|P Chain P, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|T Chain T, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|W Chain W, Chlamydomonas,Spinach Chimeric Rubisco
Length = 134
Score = 176 bits (447), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 93/123 (75%), Gaps = 1/123 (0%)
Query: 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF-DEVGYVHRENSKMPG 130
M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF + G+V+RE+ PG
Sbjct: 1 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFATDHGFVYREHHNSPG 60
Query: 131 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
YYDGRYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M FL+Q+P
Sbjct: 61 YYDGRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 120
Query: 191 TTT 193
T
Sbjct: 121 KTA 123
>pdb|3RUB|S Chain S, Crystal Structure Of The Unactivated Form Of
Ribulose-1,5-Bisphosphate Carboxylase(Slash)oxygenase
From Tobacco Refined At 2.0-Angstroms Resolution
pdb|1RLC|S Chain S, Crystal Structure Of The Unactivated Ribulose 1,
5-Bisphosphate Carboxylase(Slash)oxygenase Complexed
With A Transition State Analog, 2-Carboxy-D-Arabinitol
1,5-Bisphosphate
pdb|1RLD|S Chain S, Solid-State Phase Transition In The Crystal Structure Of
Ribulose 1,5- Biphosphate Carboxylase(Slash)oxygenase
pdb|1RLD|T Chain T, Solid-State Phase Transition In The Crystal Structure Of
Ribulose 1,5- Biphosphate Carboxylase(Slash)oxygenase
pdb|1EJ7|S Chain S, Crystal Structure Of Unactivated Tobacco Rubisco With
Bound Phosphate Ions
Length = 123
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 97/120 (80%), Gaps = 1/120 (0%)
Query: 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPG 130
M+ W PIN KK+E LSYLP LS + + E++Y+LK GW+PCLEF+ E G+V+REN+K PG
Sbjct: 1 MQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPG 60
Query: 131 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
YYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 61 YYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 120
>pdb|4RUB|S Chain S, A Crystal Form Of Ribulose-1,5-Bisphosphate
Carboxylase(Slash) Oxygenase From Nicotiana Tabacum In
The Activated State
pdb|4RUB|T Chain T, A Crystal Form Of Ribulose-1,5-Bisphosphate
Carboxylase(Slash) Oxygenase From Nicotiana Tabacum In
The Activated State
pdb|4RUB|U Chain U, A Crystal Form Of Ribulose-1,5-Bisphosphate
Carboxylase(Slash) Oxygenase From Nicotiana Tabacum In
The Activated State
pdb|4RUB|V Chain V, A Crystal Form Of Ribulose-1,5-Bisphosphate
Carboxylase(Slash) Oxygenase From Nicotiana Tabacum In
The Activated State
Length = 123
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPG 130
M+ W PIN KK+E LSYLP LS + + E++Y+LK GW+PCLEF+ E G+V+REN+K PG
Sbjct: 1 MQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPG 60
Query: 131 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
YYDGRYWTMWKLPMFGC D++Q+L E+ E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 61 YYDGRYWTMWKLPMFGCTDATQVLAEVGEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 120
>pdb|4HHH|S Chain S, Structure Of Pisum Sativum Rubisco
pdb|4HHH|T Chain T, Structure Of Pisum Sativum Rubisco
pdb|4HHH|U Chain U, Structure Of Pisum Sativum Rubisco
pdb|4HHH|V Chain V, Structure Of Pisum Sativum Rubisco
Length = 123
Score = 169 bits (428), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 94/122 (77%), Gaps = 1/122 (0%)
Query: 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPG 130
M+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ + G+V+RE++K PG
Sbjct: 1 MQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELKKGFVYREHNKSPG 60
Query: 131 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
YYDGRYWTMWKLPMFG D +Q+L E+ E KK YP A++R + FNN +Q QC+SF+ P
Sbjct: 61 YYDGRYWTMWKLPMFGTTDPAQVLKELDEVKKEYPRAFVRVIGFNNVRQVQCISFIAHTP 120
Query: 191 TT 192
+
Sbjct: 121 ES 122
>pdb|3AXK|S Chain S, Structure Of Rice Rubisco In Complex With Nadp(H)
pdb|3AXK|T Chain T, Structure Of Rice Rubisco In Complex With Nadp(H)
Length = 129
Score = 166 bits (420), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 94/119 (78%)
Query: 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGY 131
M+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN + PGY
Sbjct: 2 MQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGY 61
Query: 132 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
YDGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F+N +Q QC+SF+ KP
Sbjct: 62 YDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQCISFIAYKP 120
>pdb|1AUS|S Chain S, Activated Unliganded Spinach Rubisco
pdb|8RUC|I Chain I, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
pdb|8RUC|J Chain J, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
pdb|8RUC|K Chain K, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
pdb|8RUC|L Chain L, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
pdb|1RBO|S Chain S, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
pdb|1RBO|C Chain C, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
pdb|1RBO|F Chain F, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
pdb|1RBO|I Chain I, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
pdb|1RCO|S Chain S, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|C Chain C, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|F Chain F, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|I Chain I, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|M Chain M, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|P Chain P, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1AA1|S Chain S, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
pdb|1AA1|C Chain C, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
pdb|1AA1|F Chain F, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
pdb|1AA1|I Chain I, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
pdb|1RCX|S Chain S, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|C Chain C, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|F Chain F, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|I Chain I, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|M Chain M, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|P Chain P, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|T Chain T, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|W Chain W, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RXO|S Chain S, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
pdb|1RXO|C Chain C, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
pdb|1RXO|F Chain F, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
pdb|1RXO|I Chain I, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
pdb|1RCO|T Chain T, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|W Chain W, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1UPM|C Chain C, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|F Chain F, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|I Chain I, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|M Chain M, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|P Chain P, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|S Chain S, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|T Chain T, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|W Chain W, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPP|I Chain I, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
pdb|1UPP|J Chain J, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
pdb|1UPP|K Chain K, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
pdb|1UPP|L Chain L, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
pdb|1AUS|T Chain T, Activated Unliganded Spinach Rubisco
pdb|1AUS|U Chain U, Activated Unliganded Spinach Rubisco
pdb|1AUS|V Chain V, Activated Unliganded Spinach Rubisco
Length = 123
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
Query: 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPG 130
M+ W +N KK+E LSYLP L+ D +A+++DY+L W+PCLEF+ + G+V+RE+ PG
Sbjct: 1 MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPG 60
Query: 131 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
YYDGRYWTMWKLPMFGC D +Q+LNE++ECKK YPNA+IR + F++ ++ QC+SF+ KP
Sbjct: 61 YYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKP 120
Query: 191 T 191
Sbjct: 121 A 121
>pdb|1IR1|S Chain S, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1IR1|T Chain T, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1IR1|U Chain U, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1IR1|V Chain V, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
Length = 123
Score = 164 bits (414), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 93/120 (77%), Gaps = 1/120 (0%)
Query: 73 KTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGY 131
K W N K++E LSYLP L+ D +A+++DY+L W+PCLEF+ + G+V+RE+ PGY
Sbjct: 2 KVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGY 61
Query: 132 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 191
YDGRYWTMWKLPMFGC D +Q+LNE++ECKK YPNA+IR + F++ +Q QC+SF+ KP
Sbjct: 62 YDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 121
>pdb|3AXM|S Chain S, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|T Chain T, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|U Chain U, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|V Chain V, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|W Chain W, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|X Chain X, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|Y Chain Y, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|Z Chain Z, Structure Of Rice Rubisco In Complex With 6pg
Length = 129
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 93/119 (78%)
Query: 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGY 131
M+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN + PGY
Sbjct: 2 MQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGY 61
Query: 132 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
YDGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 62 YDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 120
>pdb|1WDD|S Chain S, Crystal Structure Of Activated Rice Rubisco Complexed With
2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1WDD|W Chain W, Crystal Structure Of Activated Rice Rubisco Complexed With
2- Carboxyarabinitol-1,5-Bisphosphate
Length = 128
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 92/118 (77%)
Query: 73 KTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYY 132
+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN + PGYY
Sbjct: 2 QVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYY 61
Query: 133 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
DGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 62 DGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 119
>pdb|1GK8|I Chain I, Rubisco From Chlamydomonas Reinhardtii
pdb|1GK8|K Chain K, Rubisco From Chlamydomonas Reinhardtii
pdb|1GK8|M Chain M, Rubisco From Chlamydomonas Reinhardtii
pdb|1GK8|O Chain O, Rubisco From Chlamydomonas Reinhardtii
pdb|2V63|I Chain I, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|J Chain J, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|K Chain K, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|L Chain L, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|M Chain M, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|N Chain N, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|O Chain O, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|P Chain P, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V67|I Chain I, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|J Chain J, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|K Chain K, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|L Chain L, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|M Chain M, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|N Chain N, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|O Chain O, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|P Chain P, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V68|I Chain I, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|J Chain J, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|K Chain K, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|L Chain L, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|M Chain M, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|N Chain N, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|O Chain O, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|P Chain P, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V69|I Chain I, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|J Chain J, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|K Chain K, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|L Chain L, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|M Chain M, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|N Chain N, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|O Chain O, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|P Chain P, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V6A|I Chain I, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|J Chain J, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|K Chain K, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|L Chain L, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|M Chain M, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|N Chain N, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|O Chain O, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|P Chain P, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2VDH|I Chain I, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|J Chain J, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|K Chain K, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|L Chain L, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|M Chain M, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|N Chain N, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|O Chain O, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|P Chain P, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDI|I Chain I, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|J Chain J, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|K Chain K, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|L Chain L, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|M Chain M, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|N Chain N, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|O Chain O, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|P Chain P, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
Length = 140
Score = 159 bits (403), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 88/127 (69%), Gaps = 7/127 (5%)
Query: 74 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMPG- 130
W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++ G
Sbjct: 3 VWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGS 62
Query: 131 ----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 186
YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M FL
Sbjct: 63 VSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 122
Query: 187 IQKPTTT 193
+Q+P T
Sbjct: 123 VQRPKTA 129
>pdb|1UW9|C Chain C, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|F Chain F, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|I Chain I, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|J Chain J, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|M Chain M, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|P Chain P, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|T Chain T, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|W Chain W, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UWA|C Chain C, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|F Chain F, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|I Chain I, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|J Chain J, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|M Chain M, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|P Chain P, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|T Chain T, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|W Chain W, L290f Mutant Rubisco From Chlamydomonas
Length = 140
Score = 159 bits (402), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 89/129 (68%), Gaps = 7/129 (5%)
Query: 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMP 129
M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++
Sbjct: 1 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRF 60
Query: 130 G-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 184
G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M
Sbjct: 61 GSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMG 120
Query: 185 FLIQKPTTT 193
FL+Q+P +
Sbjct: 121 FLVQRPKSA 129
>pdb|1IR2|I Chain I, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|J Chain J, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|K Chain K, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|L Chain L, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|M Chain M, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|N Chain N, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|O Chain O, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|P Chain P, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|1 Chain 1, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|2 Chain 2, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|3 Chain 3, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|4 Chain 4, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|5 Chain 5, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|6 Chain 6, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|7 Chain 7, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|8 Chain 8, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
Length = 140
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 88/127 (69%), Gaps = 7/127 (5%)
Query: 74 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMPG- 130
W P+NNK FE SYLP LSD+ IA ++DY++ GWIPCLEF E YV E++ G
Sbjct: 3 VWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGS 62
Query: 131 ----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 186
YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M FL
Sbjct: 63 VSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 122
Query: 187 IQKPTTT 193
+Q+P +
Sbjct: 123 VQRPKSA 129
>pdb|1UZH|C Chain C, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|F Chain F, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|I Chain I, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|J Chain J, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|M Chain M, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|P Chain P, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|T Chain T, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|W Chain W, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
Length = 122
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 81/122 (66%), Gaps = 11/122 (9%)
Query: 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGY 131
M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E H +
Sbjct: 1 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAE----HSNPEEF--- 53
Query: 132 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 191
YWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M FL+Q+P
Sbjct: 54 ----YWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPK 109
Query: 192 TT 193
T
Sbjct: 110 TA 111
>pdb|2YBV|B Chain B, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|D Chain D, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|F Chain F, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|H Chain H, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|J Chain J, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|L Chain L, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|N Chain N, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|P Chain P, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|3ZXW|B Chain B, Structure Of Activated Rubisco From Thermosynechococcus
Elongatus Complexed With
2-Carboxyarabinitol-1,5-Diphosphate
pdb|3ZXW|D Chain D, Structure Of Activated Rubisco From Thermosynechococcus
Elongatus Complexed With
2-Carboxyarabinitol-1,5-Diphosphate
pdb|3ZXW|F Chain F, Structure Of Activated Rubisco From Thermosynechococcus
Elongatus Complexed With
2-Carboxyarabinitol-1,5-Diphosphate
pdb|3ZXW|H Chain H, Structure Of Activated Rubisco From Thermosynechococcus
Elongatus Complexed With
2-Carboxyarabinitol-1,5-Diphosphate
Length = 118
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 77/115 (66%), Gaps = 11/115 (9%)
Query: 81 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 140
+++E SYLP LSD IA++I Y + +G+ PC+EF+E N+++ RYWTMW
Sbjct: 8 RRYETFSYLPPLSDAQIARQIQYAIDQGYHPCVEFNETS-----NAEI------RYWTMW 56
Query: 141 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 195
KLP+F C ++ +LNE+Q+C+ YPN +IR +AF+N KQ Q MSF++ KP S
Sbjct: 57 KLPLFNCTNAQDVLNEVQQCRSEYPNCFIRVVAFDNIKQCQVMSFIVYKPNQANS 111
>pdb|1RSC|M Chain M, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|I Chain I, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|N Chain N, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|J Chain J, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|O Chain O, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|K Chain K, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|P Chain P, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
pdb|1RSC|L Chain L, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
Length = 111
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 70/111 (63%), Gaps = 11/111 (9%)
Query: 80 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 139
++FE SYLP LSD IA +I+YM+++G+ P +EF+E H + YWTM
Sbjct: 9 ERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNE----HSNPEEF-------YWTM 57
Query: 140 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
WKLP+F C Q+L+E++EC+ Y + YIR F+N K+ Q +SF++ +P
Sbjct: 58 WKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKECQTVSFIVHRP 108
>pdb|1RBL|M Chain M, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|I Chain I, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|N Chain N, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|J Chain J, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|O Chain O, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|K Chain K, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|P Chain P, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|L Chain L, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
Length = 109
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 69/111 (62%), Gaps = 11/111 (9%)
Query: 80 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 139
++FE SYLP LSD IA +I+YM+++G+ P +EF+E H + YWTM
Sbjct: 8 ERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNE----HSNPEEF-------YWTM 56
Query: 140 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
WKLP+F C Q+L+E++EC+ Y + YIR F+N K+ Q SF++ +P
Sbjct: 57 WKLPLFACAAPQQVLDEVRECRSEYGDCYIRVAGFDNIKECQTSSFIVHRP 107
>pdb|1SVD|M Chain M, The Structure Of Halothiobacillus Neapolitanus Rubisco
Length = 110
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 11/108 (10%)
Query: 82 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 141
K+E SYLP ++ + I +I Y + +GW P +E EV +NS +YW MWK
Sbjct: 12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEV-----KNSM------NQYWYMWK 60
Query: 142 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 189
LP FG + +L EI+ C+ AYP ++ +A++N Q ++F++ +
Sbjct: 61 LPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFVVYR 108
>pdb|1BXN|I Chain I, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
pdb|1BXN|J Chain J, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
pdb|1BXN|K Chain K, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
pdb|1BXN|L Chain L, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms
Length = 139
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 86 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 145
S+LP L+D+ I K+++Y L +GW LE+ + H N+ YW M+ LPMF
Sbjct: 8 FSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDP--HPRNT---------YWEMFGLPMF 56
Query: 146 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 190
D++ IL EI + +PN YIR AF++ + MSF++ +P
Sbjct: 57 DLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRP 103
>pdb|4F0H|B Chain B, Unactivated Rubisco With Oxygen Bound
pdb|4F0K|B Chain B, Unactivated Rubisco With Magnesium And Carbon Dioxide
Bound
pdb|4F0M|B Chain B, Unactivated Rubisco With Magnesium And A Water Molecule
Bound
Length = 138
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 13/108 (12%)
Query: 85 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 144
S+LP L+D+ I K+IDYM+ K +E+ +H NS +W MW LP+
Sbjct: 7 TFSFLPDLTDEQIKKQIDYMISKKLAIGIEY--TNDIHPRNS---------FWEMWGLPL 55
Query: 145 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 190
F D + +L EI C+KA N YI+ + F++++ + +SF++ +P
Sbjct: 56 FEVTDPAPVLFEINACRKAKSNFYIKVVGFSSERGIESTIISFIVNRP 103
>pdb|1BWV|S Chain S, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|U Chain U, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|W Chain W, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|Y Chain Y, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
Length = 138
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 85 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 144
S+LP L+D+ I K+IDYM+ K +E+ +H N+ YW +W LP+
Sbjct: 7 TFSFLPDLTDEQIKKQIDYMISKKLAIGIEY--TNDIHPRNA---------YWEIWGLPL 55
Query: 145 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 190
F D + +L EI C+KA N YI+ + F++ + + +SF++ +P
Sbjct: 56 FDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRP 103
>pdb|1IWA|B Chain B, Rubisco From Galdieria Partita
pdb|1IWA|D Chain D, Rubisco From Galdieria Partita
pdb|1IWA|F Chain F, Rubisco From Galdieria Partita
pdb|1IWA|H Chain H, Rubisco From Galdieria Partita
pdb|1IWA|J Chain J, Rubisco From Galdieria Partita
pdb|1IWA|L Chain L, Rubisco From Galdieria Partita
pdb|1IWA|N Chain N, Rubisco From Galdieria Partita
pdb|1IWA|P Chain P, Rubisco From Galdieria Partita
Length = 138
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 85 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 144
S+LP L+D+ I K+IDYM+ K +E+ +H N+ YW +W LP+
Sbjct: 7 TFSFLPDLTDEQIKKQIDYMISKKLAIGIEY--TNDIHPRNA---------YWEIWGLPL 55
Query: 145 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 190
F D + +L EI C+KA N YI+ + F++ + + +SF++ +P
Sbjct: 56 FDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRP 103
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 123 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 178
RE P + G +T+ L MFG + S I+N Q C A + + + +N+K
Sbjct: 141 REGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEK 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,265,150
Number of Sequences: 62578
Number of extensions: 259694
Number of successful extensions: 633
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 29
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)