BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029245
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Marchantia paleacea GN=RBCS PE=2 SV=1
Length = 180
Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 103/135 (76%), Gaps = 1/135 (0%)
Query: 58 WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE 117
W +KT +NGS+ CM+ W P NN KFE LSYLP LS D++AK+IDY++K GW PC+EFD
Sbjct: 45 WQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDV 104
Query: 118 VGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAY-PNAYIRCLAFNN 176
G V RE S MPGYYDGRYWTMWKLPMFGC DS+ +L EI+ECKK Y YIRCL F+N
Sbjct: 105 QGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDN 164
Query: 177 QKQGQCMSFLIQKPT 191
+Q QC SF++ +PT
Sbjct: 165 TRQVQCASFIVHQPT 179
>sp|P26574|RBS1_SOLTU Ribulose bisphosphate carboxylase small chain 1, chloroplastic
OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1
Length = 181
Score = 198 bits (503), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/155 (58%), Positives = 118/155 (76%), Gaps = 6/155 (3%)
Query: 39 YLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDS 96
+ GLK S A PV K ++ +S SNG + RCM+ W PIN KK+E LSYLP L+D+
Sbjct: 27 FTGLK--SAATFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQ 83
Query: 97 IAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 155
+ KE++Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L
Sbjct: 84 LLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLA 143
Query: 156 EIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
E+QECKK+YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 144 EVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKP 178
>sp|P26576|RBSB_SOLTU Ribulose bisphosphate carboxylase small chain 2B, chloroplastic
OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1
Length = 180
Score = 197 bits (501), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 117/153 (76%), Gaps = 2/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK T+ + K ++ +S SNG + RCM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL 84
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 KEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
+E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 145 EEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Capsicum annuum GN=RBCS PE=2 SV=1
Length = 187
Score = 197 bits (501), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 106/135 (78%), Gaps = 1/135 (0%)
Query: 60 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EV 118
+ SNG + CM W PIN KK+E LSYLP LSD+ + KEI+Y+L+KGW+PCLEF+ E
Sbjct: 46 TSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEH 105
Query: 119 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 178
G+V+RE+ + PGYYDGRYWTMWKLPMFGC D++Q+LNE+QE KKAYP A+IR + F+N +
Sbjct: 106 GFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVR 165
Query: 179 QGQCMSFLIQKPTTT 193
Q QC+SF+ KP T
Sbjct: 166 QVQCISFIAYKPEAT 180
>sp|P26577|RBSC_SOLTU Ribulose bisphosphate carboxylase small chain 2C, chloroplastic
OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1
Length = 180
Score = 197 bits (501), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 117/153 (76%), Gaps = 2/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK T+ + K ++ +S SNG + RCM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL 84
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 KEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
+E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 145 EEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
>sp|P32764|RBS3_SOLTU Ribulose bisphosphate carboxylase small chain 3, chloroplastic
OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1
Length = 181
Score = 197 bits (501), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK + + K++ + SNG + RCM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL 85
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE++Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 86 KEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 145
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
QE KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 146 QEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Larix laricina GN=RBCS PE=3 SV=1
Length = 189
Score = 197 bits (500), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 120/186 (64%), Gaps = 2/186 (1%)
Query: 5 SSLVFNSSGSSDVFNQCPKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVS 64
SS++ SS ++ P K S + G + P+SK + W KT S
Sbjct: 3 SSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTM--SNAGAEWEQKTTS 60
Query: 65 NGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRE 124
NGS+ RCM+ W P NKKFE LSYLP L+ + + KE++Y+LK W+PCLEF+E G + R
Sbjct: 61 NGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRV 120
Query: 125 NSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 184
PGYYDGRYW MWKLPMFGC ++SQ+LNE+ EC KAYPNA+IR + F+N +Q QC+S
Sbjct: 121 YGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCIS 180
Query: 185 FLIQKP 190
F++ KP
Sbjct: 181 FIVHKP 186
>sp|P26575|RBSA_SOLTU Ribulose bisphosphate carboxylase small chain 2A, chloroplastic
OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1
Length = 180
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 116/153 (75%), Gaps = 2/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK + + K ++ +S SNG + RCM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL 84
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 KEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
+E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 145 EEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
>sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Flaveria trinervia GN=RBCS PE=2 SV=1
Length = 173
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 113/154 (73%), Gaps = 3/154 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK + A PV + S SNG + +CMK W P+ KK+E LSYLP L++ +A
Sbjct: 20 FTGLK--ANAAFPVTKKVNGFSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLA 77
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE+DY+L+ W+PCLEF+ E G+V+REN+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 78 KEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 137
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 191
QECKK YP A+IR + F+N +Q QC+SF+ KPT
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPT 171
>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Pinus thunbergii GN=RBCS PE=2 SV=1
Length = 171
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 3/157 (1%)
Query: 37 SGYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLS 93
S + GLK T++ K S A W KT SNG + RCM+ W P N KFE LSYLP+L+
Sbjct: 14 SAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLT 73
Query: 94 DDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 153
++ + KE++Y+L+ W+PCLEFD G + R+ ++ PGYYDGRYW MWKLPMFGC ++SQ+
Sbjct: 74 EEQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQV 133
Query: 154 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
+NE++EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 134 INEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain 3B, chloroplastic
OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2
Length = 181
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%)
Query: 26 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 81
SA++ T+P + + GLK S A PV ++ SNG + CMK W PI K
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKK 65
Query: 82 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 140
KFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMW 125
Query: 141 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 194
KLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179
>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
Length = 183
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 112/152 (73%), Gaps = 3/152 (1%)
Query: 41 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 100
GLK S + PV + SNG + +CM+ W P+ KKFE LSYLP LS +S+AKE
Sbjct: 32 GLK--SSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89
Query: 101 IDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 159
+DY+L+K W+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ+L E++E
Sbjct: 90 VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149
Query: 160 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 191
KKAYP ++IR + F+N +Q QC+SF+ KP
Sbjct: 150 AKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181
>sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Raphanus sativus GN=RBCS PE=2 SV=1
Length = 181
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%)
Query: 26 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 81
SA++ T+ + + + GLK S A PV ++ SNG + CMK W PI K
Sbjct: 8 SAAVVTSQLQATMVAPFTGLK--SSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKK 65
Query: 82 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 140
KFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMW 125
Query: 141 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 194
KLP+FGC DS+Q+L E+QECKK YPNA IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPPSFT 179
>sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small chain 7, chloroplastic
OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1
Length = 173
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK S A PV + S SNG + +CMK W P+ K++E LSYLP+L++ +A
Sbjct: 20 FTGLK--SNAAFPVTKKVNDFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLA 77
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 78 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 137
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
>sp|P12468|RBS4_SOYBN Ribulose bisphosphate carboxylase small chain 4, chloroplastic
OS=Glycine max GN=RBCS-4 PE=3 SV=1
Length = 178
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 121/170 (71%), Gaps = 7/170 (4%)
Query: 26 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 81
S ++ T AG+G + GLK S A LP + + + SNG + +CM+ W P+ K
Sbjct: 8 SPAVTTVNRAGAGMVAPFTGLK--SMAGLPTRKTNNDITSIASNGGRVQCMQVWPPVGKK 65
Query: 82 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 140
KFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+++ GYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMW 125
Query: 141 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
KLPMFGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+ KP
Sbjct: 126 KLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175
>sp|P07180|RBS3A_SOLLC Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic
OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1
Length = 180
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 114/153 (74%), Gaps = 2/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK T+ + K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLL 84
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
EI+Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 SEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
QE KKAYP A++R + F+N +Q QC+SF+ KP
Sbjct: 145 QEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
>sp|P05349|RBS3B_SOLLC Ribulose bisphosphate carboxylase small chain 3B, chloroplastic
OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1
Length = 180
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 114/153 (74%), Gaps = 2/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK T+ + K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLL 84
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
EI+Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 SEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
QE KKAYP A++R + F+N +Q QC+SF+ KP
Sbjct: 145 QEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
>sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea
mays GN=RBCS PE=1 SV=1
Length = 170
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 117/169 (69%), Gaps = 5/169 (2%)
Query: 22 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 81
P M AS TA + GLK S A LPV + S VSNG + RCM+ W NK
Sbjct: 3 PTVMMASSATAVAP---FQGLK--STASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNK 57
Query: 82 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 141
KFE LSYLP LS D + K++DY+L+ GWIPCLEF +VG+V+RENS P YYDGRYWTMWK
Sbjct: 58 KFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWK 117
Query: 142 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
LPMFGCND++Q+ E+QE K+YP+A+ R + F+N KQ QC+SF+ KP
Sbjct: 118 LPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKP 166
>sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Malus sp. GN=RBCS PE=2 SV=1
Length = 183
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 114/154 (74%), Gaps = 3/154 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK +S + PV + SNG + +CM+ W P+ KKFE LSYLP LS +S+A
Sbjct: 30 FTGLKSSSAS--PVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLA 87
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE+DY+L+K W+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ+L E+
Sbjct: 88 KEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKEL 147
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 191
+E KKAYP ++IR + F+N +Q QC+SF+ KP
Sbjct: 148 EEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181
>sp|P00865|RBS1_SOYBN Ribulose bisphosphate carboxylase small chain 1, chloroplastic
OS=Glycine max GN=RBCS-1 PE=3 SV=1
Length = 178
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 120/170 (70%), Gaps = 7/170 (4%)
Query: 26 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 81
S ++ T AG+G + GLK S A P + + + SNG + +CM+ W PI K
Sbjct: 8 SPAVTTVNRAGAGMVAPFTGLK--SMAGFPTRKTNNDITSIASNGGRVQCMQVWPPIGKK 65
Query: 82 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 140
KFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+++ P YYDGRYWTMW
Sbjct: 66 KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMW 125
Query: 141 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
KLPMFGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+ KP
Sbjct: 126 KLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175
>sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small chain 3, chloroplastic
OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1
Length = 173
Score = 194 bits (492), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK S A PV + S SNG + +CMK W P+ K++E LSYLP+L++ +A
Sbjct: 20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLA 77
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 78 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 137
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
>sp|Q42823|RBS_GLYTA Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Glycine tabacina GN=RBCS PE=3 SV=1
Length = 178
Score = 194 bits (492), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 123/177 (69%), Gaps = 13/177 (7%)
Query: 25 MSASIFTAPV------AGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKT 74
M++S+ ++P AG+G + GLK S A P + + + SNG + +CM+
Sbjct: 1 MASSMISSPAVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQV 58
Query: 75 WNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYD 133
W KKFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+ + PGYYD
Sbjct: 59 WPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYD 118
Query: 134 GRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
GRYWTMWKLPMFGC D+SQ+L E+QE K AYPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 119 GRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKP 175
>sp|P07179|RBS2A_SOLLC Ribulose bisphosphate carboxylase small chain 2A, chloroplastic
OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2
Length = 180
Score = 193 bits (491), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 116/155 (74%), Gaps = 6/155 (3%)
Query: 39 YLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDS 96
+ GLK S A PV K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+
Sbjct: 26 FTGLK--SSATFPVTKKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQ 82
Query: 97 IAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 155
+ EI+Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L
Sbjct: 83 LLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLA 142
Query: 156 EIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
E+QE KKAYP A++R + F+N +Q QC+SF+ KP
Sbjct: 143 EVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
>sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small chain 5, chloroplastic
OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1
Length = 173
Score = 193 bits (490), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK S A PV + S SNG + +CMK W P+ K++E LSYLP+L++ +A
Sbjct: 20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLA 77
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 78 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 137
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
>sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small chain 1, chloroplastic
OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1
Length = 173
Score = 192 bits (489), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK + A PV + S SNG + +CMK W P+ KK+E LSYLP L++ +A
Sbjct: 20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLA 77
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 78 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 137
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain 1B, chloroplastic
OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1
Length = 181
Score = 192 bits (489), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 120/174 (68%), Gaps = 7/174 (4%)
Query: 26 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 81
SA++ T+P + + GLK S A PV ++ SNG + CMK W PI K
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKK 65
Query: 82 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 140
KFE LSYLP L+D +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMW 125
Query: 141 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 194
KLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179
>sp|P08706|RBS1_SOLLC Ribulose bisphosphate carboxylase small chain 1, chloroplastic
OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2
Length = 181
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK + + K++ + SNG + RCM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL 85
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
EI+Y+LK GW+PCLEF+ E G+V+REN+ PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 86 SEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 145
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
QE KKAYP A++R + F+N +Q QC+SF+ KP
Sbjct: 146 QEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 178
>sp|P22433|RBS2_NICSY Ribulose bisphosphate carboxylase small chain S41, chloroplastic
OS=Nicotiana sylvestris PE=3 SV=1
Length = 181
Score = 192 bits (488), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 116/153 (75%), Gaps = 2/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS++ +
Sbjct: 27 FTGLKSATSFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLL 85
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
+E++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 86 REVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 145
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
+E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 146 EEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Brassica napus GN=RBCS PE=2 SV=2
Length = 181
Score = 192 bits (488), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 120/173 (69%), Gaps = 5/173 (2%)
Query: 26 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKK 82
SA++ T+P + + GLK +S A + + + VSNG + CMK W P+ KK
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK-SSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKK 66
Query: 83 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWK 141
FE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWK
Sbjct: 67 FETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWK 126
Query: 142 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 194
LP+FGC DS+Q+L E+QECK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 127 LPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 179
>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Lactuca sativa GN=RBCS PE=2 SV=1
Length = 181
Score = 192 bits (488), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 104/128 (81%), Gaps = 1/128 (0%)
Query: 64 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 122
SNG + +CMK W PI KK+E LSYLP LSD++++KEIDY+++ WIPCLEF+ E G+V+
Sbjct: 50 SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVY 109
Query: 123 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 182
RE+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK YPNA+IR + F+N +Q QC
Sbjct: 110 REHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQC 169
Query: 183 MSFLIQKP 190
+SF++ KP
Sbjct: 170 ISFIVAKP 177
>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1
Length = 178
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 83/145 (57%), Positives = 105/145 (72%)
Query: 46 SKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYML 105
S A PV A SSK SNG + RCM+ W P KKFE LSYLP L+ + + +E+DY++
Sbjct: 31 SSAAFPVTRKFADSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLI 90
Query: 106 KKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYP 165
+ GWIPC+EF +VG+V+RE PGYYDGRYWTMWKLPMFGC DSSQ+L E+ EC KAYP
Sbjct: 91 RNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYP 150
Query: 166 NAYIRCLAFNNQKQGQCMSFLIQKP 190
+ + R + F+N +Q QC+SFL KP
Sbjct: 151 DYFNRIIGFDNTRQVQCISFLTYKP 175
>sp|Q42822|RBS_GLYTO Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Glycine tomentella GN=RBCS PE=3 SV=1
Length = 178
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/177 (50%), Positives = 122/177 (68%), Gaps = 13/177 (7%)
Query: 25 MSASIFTAPV------AGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKT 74
M++S+ ++P AG+G + GLK S A P + + + SNG + +CM+
Sbjct: 1 MASSMISSPAVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQV 58
Query: 75 WNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYD 133
W KKFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+REN + PGYYD
Sbjct: 59 WPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYD 118
Query: 134 GRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
GRYWTMWKLP+FGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+ KP
Sbjct: 119 GRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175
>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain 2B, chloroplastic
OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2
Length = 181
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 119/174 (68%), Gaps = 7/174 (4%)
Query: 26 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 81
S ++ T+P + + GLK S A PV ++ SNG + CMK W PI K
Sbjct: 8 STAVVTSPAQATMVAPFTGLK--SSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKK 65
Query: 82 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 140
KFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMW 125
Query: 141 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 194
KLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179
>sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small chain 4, chloroplastic
OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1
Length = 178
Score = 191 bits (486), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK S A P S SNG + +CMK W P+ KK+E LSYLP+L++ +A
Sbjct: 25 FTGLK--SNAAFPATKKANDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLA 82
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 83 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 142
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 143 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175
>sp|P10647|RBS0_SOLTU Ribulose bisphosphate carboxylase small chain C, chloroplastic
OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1
Length = 181
Score = 191 bits (486), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 112/153 (73%), Gaps = 1/153 (0%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK + + K++ + SNG + RCM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL 85
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE++Y+LK GW+PCLEF+ E G+V+RE++ PGYYDGRYWTMWKLPMFGC D +Q+L E+
Sbjct: 86 KEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEV 145
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
QE K AYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 146 QEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
>sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small chain F1, chloroplastic
OS=Brassica napus GN=RBCS F1 PE=3 SV=1
Length = 181
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 7/174 (4%)
Query: 26 SASIFTAPVAGS---GYLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNK 81
SA++ T+P + + GLK S A PV + + + SNG + CMK W P+ K
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKK 65
Query: 82 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 140
KFE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMW 125
Query: 141 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 194
KLP+FGC DS+Q+L E+QECK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 179
>sp|P69249|RBS_TOBAC Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Nicotiana tabacum GN=RBCS PE=1 SV=1
Length = 180
Score = 190 bits (483), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 114/153 (74%), Gaps = 2/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS + +
Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLL 84
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
E++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 SEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
+E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 145 EEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
>sp|P69250|RBS1_NICSY Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1
Length = 180
Score = 190 bits (483), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 114/153 (74%), Gaps = 2/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS + +
Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLL 84
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
E++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 SEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
+E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 145 EEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
>sp|Q41351|RBS_STELP Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Stellaria longipes GN=RBCS PE=2 SV=1
Length = 180
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 112/154 (72%), Gaps = 4/154 (2%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 97
+ GLK S A PV ++ SNG + RCM+ W PIN KK+E LSYLP LS + +
Sbjct: 26 FTGLK--SNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQL 83
Query: 98 AKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE 156
EI+Y+LK GW+PCLEF+ E G+V+RE++ PGYYDGRYWTMWKLPMFGC D++Q+ E
Sbjct: 84 LSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAE 143
Query: 157 IQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
+QE KKAYP+A+IR + F+N +Q QC+SF+ KP
Sbjct: 144 VQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177
>sp|Q96542|RBS_BETPN Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Betula pendula GN=RBCS1 PE=2 SV=1
Length = 182
Score = 190 bits (482), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 107/132 (81%), Gaps = 1/132 (0%)
Query: 60 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EV 118
+ SNG + +CM+ W P+ KKFE LSYLP LS + +AKE+DY+L+K IPCLEF+ E
Sbjct: 48 TSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEH 107
Query: 119 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 178
G+V+RE+++ PGYYDGRYWTMWKLPMFGCNDSSQ+L E++ECKKAYP+A+IR + F+N++
Sbjct: 108 GFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKR 167
Query: 179 QGQCMSFLIQKP 190
Q Q +SF+ KP
Sbjct: 168 QVQIISFIAYKP 179
>sp|Q39748|RBS6_FLAPR Ribulose bisphosphate carboxylase small chain 6, chloroplastic
OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1
Length = 173
Score = 190 bits (482), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK + A PV + S SNG + +CMK W P+ KK+ LSYLP+L++ +A
Sbjct: 20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLA 77
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS Q++ E+
Sbjct: 78 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKEL 137
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain 1A, chloroplastic
OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2
Length = 180
Score = 190 bits (482), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 104/136 (76%), Gaps = 1/136 (0%)
Query: 60 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EV 118
+ SNG + CM+ W PI KKFE LSYLP L+D +AKE+DY+++ WIPC+EF+ E
Sbjct: 44 TSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEH 103
Query: 119 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 178
G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK YPNA+IR + F+N +
Sbjct: 104 GFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTR 163
Query: 179 QGQCMSFLIQKPTTTT 194
Q QC+SF+ KP + T
Sbjct: 164 QVQCISFIAYKPPSFT 179
>sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic
OS=Triticum aestivum PE=3 SV=2
Length = 174
Score = 189 bits (481), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 120/169 (71%), Gaps = 6/169 (3%)
Query: 22 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 81
P M++S T + + GLK T A LPV S +VSNG + RCM+ W K
Sbjct: 3 PAVMASSATTV----APFQGLKST--AGLPVSRRSRGSLGSVSNGGRIRCMQVWPIEGIK 56
Query: 82 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 141
KFE LSYLP LS ++++K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWK
Sbjct: 57 KFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWK 116
Query: 142 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
LPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 117 LPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 165
>sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small chain 2, chloroplastic
OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1
Length = 178
Score = 189 bits (480), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 76/128 (59%), Positives = 104/128 (81%), Gaps = 1/128 (0%)
Query: 64 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 122
SNG + +CMK W P+ K++E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+
Sbjct: 48 SNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVY 107
Query: 123 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 182
REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC
Sbjct: 108 RENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQC 167
Query: 183 MSFLIQKP 190
+SF+ KP
Sbjct: 168 ISFIASKP 175
>sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small chain 2, chloroplastic
OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1
Length = 179
Score = 189 bits (480), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 39 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 97
++GLK S + PV + ++ S SNG + +CMK W + KKFE LSYLP+LS +S+
Sbjct: 28 FVGLK--SASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESL 85
Query: 98 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E
Sbjct: 86 LKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEA 145
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
ECKK YP A+IR + F+N +Q QC+SF+++KP
Sbjct: 146 AECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic
OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1
Length = 179
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 97
++GLK TS PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+
Sbjct: 28 FVGLKSTSA--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESL 85
Query: 98 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E
Sbjct: 86 LKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEA 145
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
ECKK YP A+IR + F+N +Q QC+SF++++P
Sbjct: 146 AECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178
>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic
OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1
Length = 179
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 97
++GLK S + PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+
Sbjct: 28 FVGLK--SASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESL 85
Query: 98 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E
Sbjct: 86 LKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEA 145
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
ECKK YP A+IR + F+N +Q QC+SF+++KP
Sbjct: 146 AECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|P18960|RBS_SILPR Ribulose bisphosphate carboxylase small chain, chloroplastic
OS=Silene pratensis GN=RBCS PE=2 SV=1
Length = 177
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/154 (56%), Positives = 117/154 (75%), Gaps = 4/154 (2%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK TS + K ++ +S +NG + CM+ W P N KKFE LSYLP+LS++S+
Sbjct: 25 FSGLKSTSAFPVSRKSNVDITS-LATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLL 83
Query: 99 KEIDYMLKKGWIPCLEFDEVG--YVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE 156
KEI+Y+L KGW+PCLEF EVG +V+REN+K PGYYDGRYWTMWKLPMFGC D+SQ+ E
Sbjct: 84 KEINYLLIKGWVPCLEF-EVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAE 142
Query: 157 IQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
+ ECK AYP+A++R + F+N++Q QC+SF+ KP
Sbjct: 143 VVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176
>sp|P26573|RBS8_NICPL Ribulose bisphosphate carboxylase small chain 8B, chloroplastic
OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1
Length = 180
Score = 187 bits (476), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 112/153 (73%), Gaps = 2/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 98
+ GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS + +
Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLL 84
Query: 99 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
EI+Y+LK GW+PCLEF+ E G+V+RE+ PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 SEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
+E KKAYP A++R + F+N +Q QC+SF+ KP
Sbjct: 145 EEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
>sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain 5, chloroplastic
OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1
Length = 179
Score = 187 bits (475), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
Query: 39 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 97
++GLK S + PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+
Sbjct: 28 FVGLK--SASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESL 85
Query: 98 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 157
K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC ++Q++ E
Sbjct: 86 LKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEA 145
Query: 158 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 190
ECKK YP A+IR + F+N +Q QC+SF+++KP
Sbjct: 146 AECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,492,808
Number of Sequences: 539616
Number of extensions: 3123687
Number of successful extensions: 6296
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5986
Number of HSP's gapped (non-prelim): 183
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)