Query 029245
Match_columns 196
No_of_seqs 195 out of 464
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 15:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdd_S Ribulose bisphosphate c 100.0 6.4E-75 2.2E-79 462.8 16.3 124 72-195 1-124 (128)
2 1gk8_I Ribulose bisphosphate c 100.0 1.9E-73 6.7E-78 459.9 15.3 123 72-194 1-130 (140)
3 3zxw_B Ribulose bisphosphate c 100.0 1E-64 3.4E-69 399.3 13.0 111 72-195 1-111 (118)
4 1rbl_M Ribulose 1,5 bisphospha 100.0 2.2E-63 7.4E-68 387.1 14.0 107 72-191 2-108 (109)
5 1svd_M Ribulose bisphosphate c 100.0 5.1E-62 1.7E-66 379.9 14.0 107 72-191 4-110 (110)
6 1bwv_S Rubisco, protein (ribul 100.0 3.1E-57 1.1E-61 364.8 13.2 102 81-193 3-106 (138)
7 1bxn_I Rubisco, protein (ribul 100.0 3.5E-57 1.2E-61 364.9 10.5 102 81-193 3-106 (139)
8 4f0h_B Ribulose bisphosphate c 100.0 9.5E-56 3.3E-60 356.1 13.6 101 82-193 4-106 (138)
9 3frm_A Uncharacterized conserv 87.9 0.73 2.5E-05 37.2 5.2 60 105-172 13-75 (254)
10 3hxa_A Pterin-4-alpha-carbinol 62.1 5.4 0.00019 29.7 2.9 63 89-169 5-68 (104)
11 1cc5_A Cytochrome C5; electron 55.9 7 0.00024 26.6 2.4 18 90-107 66-83 (83)
12 1ru0_A DCOH-like protein dcohm 51.6 11 0.00038 27.9 3.1 61 89-168 7-69 (105)
13 3m91_B Prokaryotic ubiquitin-l 46.7 11 0.00038 24.9 2.1 22 149-170 15-36 (44)
14 3oon_A Outer membrane protein 46.4 19 0.00064 26.2 3.6 29 149-177 31-59 (123)
15 3ph2_B Cytochrome C6; photosyn 45.6 15 0.0005 23.9 2.6 18 90-107 64-81 (86)
16 3td3_A Outer membrane protein 45.0 22 0.00074 25.9 3.7 28 149-176 28-55 (123)
17 2hqs_H Peptidoglycan-associate 43.6 22 0.00076 26.0 3.6 29 149-177 20-48 (118)
18 1gdv_A Cytochrome C6; RED ALGA 42.0 18 0.00061 23.4 2.6 17 90-106 63-79 (85)
19 2do7_A Cullin-4B, CUL-4B; heli 39.6 32 0.0011 25.7 4.0 27 86-117 59-85 (101)
20 1q02_A Sequestosome 1; helical 39.4 21 0.00072 24.3 2.6 22 89-110 2-23 (52)
21 1kx2_A Mono-heme C-type cytoch 38.8 18 0.00061 24.0 2.3 18 90-107 63-80 (81)
22 2d0s_A Cytochrome C, cytochrom 38.2 22 0.00074 23.1 2.6 18 90-107 61-78 (79)
23 2aiz_P Outer membrane protein 37.0 31 0.0011 25.9 3.6 29 149-177 44-72 (134)
24 3dmi_A Cytochrome C6; electron 36.7 31 0.0011 22.4 3.2 18 90-107 65-82 (88)
25 2kgw_A Outer membrane protein 36.4 27 0.00091 25.7 3.1 28 149-176 38-65 (129)
26 1a56_A C-551, ferricytochrome 35.1 24 0.00083 23.0 2.4 18 90-107 63-80 (81)
27 3cuq_C Vacuolar protein-sortin 34.3 28 0.00095 28.4 3.1 37 91-143 68-104 (176)
28 1e29_A Cytochrome C549; electr 33.7 24 0.00082 26.2 2.5 24 84-107 99-122 (135)
29 1gks_A Cytochrome C551; haloph 33.2 27 0.00092 23.0 2.4 17 91-107 61-77 (78)
30 1rh4_A Right-handed coiled coi 32.9 19 0.00067 22.3 1.5 13 95-107 5-17 (35)
31 3h20_A Replication protein B; 32.6 53 0.0018 29.5 4.8 71 87-178 74-153 (323)
32 3dr0_A Cytochrome C6; photosyn 31.8 24 0.00081 23.0 1.9 18 90-107 70-87 (93)
33 3jst_A Putative pterin-4-alpha 31.7 21 0.00073 25.9 1.9 59 90-168 4-63 (97)
34 3cyp_B Chemotaxis protein MOTB 31.7 33 0.0011 25.7 2.9 30 149-178 18-48 (138)
35 2ce0_A Cytochrome C6; chloropl 31.1 33 0.0011 23.1 2.7 20 88-107 75-94 (105)
36 1c75_A Cytochrome C-553; heme, 31.0 36 0.0012 21.7 2.7 18 90-107 53-70 (71)
37 2exv_A Cytochrome C-551; alpha 31.0 38 0.0013 21.8 2.8 17 91-107 65-81 (82)
38 1f1f_A Cytochrome C6; heme, pr 30.5 35 0.0012 22.2 2.6 16 91-106 68-83 (89)
39 1ayg_A Cytochrome C-552; elect 29.9 39 0.0013 22.0 2.8 17 91-107 63-79 (80)
40 2zxy_A Cytochrome C552, cytoch 29.2 27 0.00091 22.6 1.8 18 90-107 69-86 (87)
41 1unn_C POL IV, DNA polymerase 29.1 78 0.0027 22.6 4.5 29 146-174 69-98 (115)
42 2k1s_A Inner membrane lipoprot 28.7 49 0.0017 25.0 3.5 29 149-177 48-76 (149)
43 3iyk_G VP2; icosahedral virus; 28.5 52 0.0018 31.8 4.3 54 91-148 459-529 (600)
44 3pzs_A PM kinase, pyridoxamine 28.1 76 0.0026 26.0 4.8 62 89-177 54-116 (289)
45 2hgc_A YJCQ protein; SR346, st 27.1 46 0.0016 25.0 3.0 29 91-119 27-55 (102)
46 2plc_A PI-PLC, phosphatidylino 27.1 39 0.0013 28.4 2.9 26 147-172 79-104 (274)
47 1r26_A Thioredoxin; redox-acti 26.9 1E+02 0.0035 21.7 4.8 66 77-177 11-77 (125)
48 2v6u_A Pterin-4A-carbinolamine 26.9 21 0.00072 26.3 1.1 59 90-169 7-67 (104)
49 4g68_A ABC transporter; transp 26.7 82 0.0028 26.8 4.9 36 135-175 66-102 (456)
50 3cu4_A Cytochrome C family pro 26.4 41 0.0014 21.9 2.4 17 91-107 67-83 (85)
51 2fqx_A Membrane lipoprotein TM 26.2 35 0.0012 28.1 2.5 33 144-178 192-226 (318)
52 3dfg_A Xcrecx, regulatory prot 26.0 44 0.0015 26.0 2.8 29 80-111 121-149 (162)
53 1cno_A Cytochrome C552; electr 24.9 50 0.0017 21.8 2.7 19 90-108 65-83 (87)
54 3tdu_C Cullin-1, CUL-1; E2:E3, 24.6 63 0.0021 22.8 3.2 18 93-110 46-63 (77)
55 1cch_A Cytochrome C551; electr 24.4 56 0.0019 20.9 2.7 17 91-107 65-81 (82)
56 2r32_A GCN4-PII/tumor necrosis 24.1 36 0.0012 27.9 2.1 30 105-143 131-160 (166)
57 1c53_A Cytochrome C553; electr 24.0 47 0.0016 21.6 2.3 17 90-106 62-78 (79)
58 2v9v_A Selenocysteine-specific 23.6 1.4E+02 0.0048 21.3 5.1 65 84-167 21-85 (135)
59 2vrq_A Alpha-L-arabinofuranosi 23.5 29 0.00099 31.6 1.5 74 93-173 134-212 (496)
60 3c1d_A Protein ORAA, regulator 23.5 52 0.0018 25.3 2.8 29 80-111 119-147 (159)
61 3dp5_A OMCF, cytochrome C fami 23.4 49 0.0017 22.9 2.4 17 91-107 81-97 (99)
62 3zzp_A TS9, ribosomal protein 22.8 53 0.0018 23.1 2.5 33 72-104 35-68 (77)
63 1xb4_A VPS25, hypothetical 23. 22.5 72 0.0025 26.5 3.6 45 91-143 84-128 (202)
64 3ldt_A Outer membrane protein, 22.1 64 0.0022 25.1 3.1 29 149-177 68-96 (169)
65 3o2p_E Cell division control p 21.9 74 0.0025 23.0 3.2 18 93-110 58-75 (88)
66 2vyo_A ECU11_0510, chitooligos 21.8 67 0.0023 26.2 3.3 16 149-164 99-114 (254)
67 3ug3_A Alpha-L-arabinofuranosi 21.4 1.3E+02 0.0045 28.0 5.5 74 93-175 150-231 (504)
68 2zon_G Cytochrome C551; nitrit 21.3 53 0.0018 21.5 2.2 17 91-107 69-85 (87)
69 3aaf_A Werner syndrome ATP-dep 21.3 85 0.0029 23.8 3.6 28 83-110 56-83 (134)
70 3s06_A Motility protein B; pep 21.1 68 0.0023 24.6 3.0 29 149-177 46-75 (166)
71 1cyi_A Cytochrome C6, cytochro 20.8 75 0.0026 20.7 2.9 17 91-107 66-82 (90)
72 4erh_A Outer membrane protein 20.7 64 0.0022 24.1 2.8 29 149-177 36-66 (148)
73 1ls9_A Cytochrome C6; omega lo 20.6 76 0.0026 20.8 2.9 17 91-107 69-85 (91)
74 2fu4_A Ferric uptake regulatio 20.5 1.4E+02 0.0047 19.6 4.2 30 90-119 48-77 (83)
75 3ea1_A 1-phosphatidylinositol 20.1 64 0.0022 28.1 3.0 25 148-172 89-113 (298)
No 1
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=100.00 E-value=6.4e-75 Score=462.79 Aligned_cols=124 Identities=53% Similarity=1.100 Sum_probs=121.0
Q ss_pred eeeeccCCccccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCCCCHH
Q 029245 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSS 151 (196)
Q Consensus 72 m~vw~p~~~kkfET~SyLPpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~tD~s 151 (196)
||||||+|+||||||||||||||+||++||+|||+|||+|||||+|++|+||+|++||||||++||+|||||||||+|++
T Consensus 1 m~vw~p~~~~~~~tfSyLP~lt~eqI~kQI~Yll~qGw~p~lEf~d~~~~~R~~~~~~~~~~~~yW~mWkLPmFg~td~~ 80 (128)
T 1wdd_S 1 XQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDAT 80 (128)
T ss_dssp CCCCCSSSCCCCSTTTTSSCCCHHHHHHHHHHHHHTTCEEEEEEESCCSCBCSSCCSTTCCBSCCCEEESCCCTTCCCHH
T ss_pred CcccCCCCCccccccccCCCCCHHHHHHHHHHHHHCCCeeeEEecCCCceeeccCCCCCcccCCcccccCccCccCCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEEeeecCCCeEEEEEEEecCCCCCC
Q 029245 152 QILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 195 (196)
Q Consensus 152 qVL~EieeC~k~~P~~YVRLiGfDn~rQvq~~sfIV~RP~~~~~ 195 (196)
|||+||++|+++|||+|||||||||++|+||+|||||||.+.+.
T Consensus 81 ~Vl~El~~C~k~~P~~YVRligfDn~~q~q~~sfIv~RP~~~~~ 124 (128)
T 1wdd_S 81 QVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGCEE 124 (128)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEEECCTTC--
T ss_pred HHHHHHHHHHHHCCCCeEEEEEEeCCCCEEEEEEEEECCCCccc
Confidence 99999999999999999999999999999999999999998753
No 2
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=100.00 E-value=1.9e-73 Score=459.92 Aligned_cols=123 Identities=56% Similarity=1.080 Sum_probs=118.3
Q ss_pred eeeeccCCccccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecC-------CCCCCccCCcceeecCCCC
Q 029245 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHREN-------SKMPGYYDGRYWTMWKLPM 144 (196)
Q Consensus 72 m~vw~p~~~kkfET~SyLPpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~-------~~sp~yyd~rYWtMWKLPm 144 (196)
||||+|+|+||||||||||||||+||++||+|||+|||+|||||+|++++||+| ++|||||||+||+||||||
T Consensus 1 m~vw~p~~~~~~etfSyLP~lt~eqI~kQI~YlL~qGw~p~lEf~d~~~~~r~~~~~~~~~~~~~~yyd~~YW~mWkLPm 80 (140)
T 1gk8_I 1 XMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPM 80 (140)
T ss_dssp CCCCCCSSCCCCSTTTTSSCCCHHHHHHHHHHHHHTTCEEEEEEECGGGTSCBCGGGGGCSSCCTTCCBTSSCEEESCCC
T ss_pred CcccCCcCCceecccccCCCCCHHHHHHHHHHHHHCCCEeeEEeccCCcceecccccccccccCCCcCcCCeeeeCCcCC
Confidence 899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCeEEEEeeecCCCeEEEEEEEecCCCCC
Q 029245 145 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 194 (196)
Q Consensus 145 Fg~tD~sqVL~EieeC~k~~P~~YVRLiGfDn~rQvq~~sfIV~RP~~~~ 194 (196)
|||+|++|||+||++|+|+|||+|||||||||++|+||+|||||||.+..
T Consensus 81 Fg~td~~qVl~El~~C~k~~P~~YVRligfDn~~q~q~~sfIV~RP~~~~ 130 (140)
T 1gk8_I 81 FGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTAR 130 (140)
T ss_dssp TTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEEECC----
T ss_pred cCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCCCEEEEEEEeECCCCCC
Confidence 99999999999999999999999999999999999999999999998753
No 3
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=100.00 E-value=1e-64 Score=399.34 Aligned_cols=111 Identities=49% Similarity=1.019 Sum_probs=91.0
Q ss_pred eeeeccCCccccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCCCCHH
Q 029245 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSS 151 (196)
Q Consensus 72 m~vw~p~~~kkfET~SyLPpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~tD~s 151 (196)
|||||+ +|||||||||||||||||++||+|||+|||+|||||+|+++ |+++||+|||||||||+|++
T Consensus 1 m~~~p~--~kkfeTfSyLP~Lt~eqI~kQV~yll~qGw~~~lE~~d~~~-----------~~~~yW~mWklPmf~~~d~~ 67 (118)
T 3zxw_B 1 MKTLPK--ERRYETFSYLPPLSDAQIARQIQYAIDQGYHPCVEFNETSN-----------AEIRYWTMWKLPLFNCTNAQ 67 (118)
T ss_dssp ---------------CCSCCCCHHHHHHHHHHHHHHTCEEEEEEESCCC-----------TTCCCCEEESSCCTTCCCHH
T ss_pred CCcCCC--CccccccccCCCCCHHHHHHHHHHHHhCCCeeEEEeccCCC-----------cccCEEeecccCCcCCCCHH
Confidence 899996 79999999999999999999999999999999999999875 45999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEEeeecCCCeEEEEEEEecCCCCCC
Q 029245 152 QILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 195 (196)
Q Consensus 152 qVL~EieeC~k~~P~~YVRLiGfDn~rQvq~~sfIV~RP~~~~~ 195 (196)
|||+||++|+++|||+|||||||||++|+||+|||||||+++.+
T Consensus 68 ~Vl~Ele~C~k~~p~~yVRliGfD~~~q~q~~sfIv~RP~~~~p 111 (118)
T 3zxw_B 68 DVLNEVQQCRSEYPNCFIRVVAFDNIKQCQVMSFIVYKPNQANS 111 (118)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEEECC-----
T ss_pred HHHHHHHHHHHHCCCceEEEEEEeCCcCEEEEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999999987643
No 4
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=100.00 E-value=2.2e-63 Score=387.06 Aligned_cols=107 Identities=45% Similarity=0.944 Sum_probs=103.7
Q ss_pred eeeeccCCccccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCCCCHH
Q 029245 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSS 151 (196)
Q Consensus 72 m~vw~p~~~kkfET~SyLPpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~tD~s 151 (196)
||+|+ |+||||||||||||||+||++||+|||+|||+|||||+|++++ +|+||+|||||||||+|++
T Consensus 2 ~~~~~--~~~~~etfSyLP~lt~eqI~kQI~Yll~qGw~p~lEf~d~~~~-----------~~~yW~mwklPmf~~~d~~ 68 (109)
T 1rbl_M 2 MKTLP--KERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNEHSNP-----------EEFYWTMWKLPLFACAAPQ 68 (109)
T ss_dssp CCCCC--CCCCCSTTTTSSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCT-----------TCCCCEECSSCCTTCCCHH
T ss_pred CccCC--CcccccccccCCCCCHHHHHHHHHHHHHCCCEEEEEeccCccc-----------cccEEeecccCCcCCCCHH
Confidence 89998 7899999999999999999999999999999999999998865 4999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEEeeecCCCeEEEEEEEecCC
Q 029245 152 QILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 191 (196)
Q Consensus 152 qVL~EieeC~k~~P~~YVRLiGfDn~rQvq~~sfIV~RP~ 191 (196)
|||+||++|+++|||+|||||||||++|+||+|||||||+
T Consensus 69 ~Vl~Ele~C~k~~p~~yVRligfD~~~q~q~~sfIv~RP~ 108 (109)
T 1rbl_M 69 QVLDEVRECRSEYGDCYIRVAGFDNIKECQTSSFIVHRPG 108 (109)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHCCCCeEEEEEEeCCCcEEEEEEEeeCCC
Confidence 9999999999999999999999999999999999999996
No 5
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=100.00 E-value=5.1e-62 Score=379.88 Aligned_cols=107 Identities=34% Similarity=0.781 Sum_probs=102.1
Q ss_pred eeeeccCCccccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCCCCHH
Q 029245 72 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSS 151 (196)
Q Consensus 72 m~vw~p~~~kkfET~SyLPpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~tD~s 151 (196)
||.|+ |+||||||||||||||+||++||+|||+|||+|||||+|++++ +|+||+|||||||||+|++
T Consensus 4 ~~~~~--~~~~~etfSyLP~lt~eqI~kQV~Yll~qGw~p~iEf~d~~~~-----------~~~yW~mwklPmf~~~d~~ 70 (110)
T 1svd_M 4 MQDYK--QSLKYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNS-----------MNQYWYMWKLPFFGEQNVD 70 (110)
T ss_dssp CCCCC--CCCCCSTTTTSCCCCHHHHHHHHHHHHHTTCEEEEEEECGGGT-----------TCSCCEEESCCCTTCCCHH
T ss_pred ccccC--CCccccccccCCCCCHHHHHHHHHHHHHCCCeeEEEeccCCcc-----------CCcEEeecccCCcCCCCHH
Confidence 55664 8999999999999999999999999999999999999998854 4999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEEeeecCCCeEEEEEEEecCC
Q 029245 152 QILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 191 (196)
Q Consensus 152 qVL~EieeC~k~~P~~YVRLiGfDn~rQvq~~sfIV~RP~ 191 (196)
|||+||++|+++|||+|||||||||++|+||+|||||||+
T Consensus 71 ~Vl~El~~C~k~~p~~yVRligfD~~~q~q~~sfIv~RP~ 110 (110)
T 1svd_M 71 NVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFVVYRGN 110 (110)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHCCCCeEEEEEEeCCCCEEEEEEEeeCCC
Confidence 9999999999999999999999999999999999999995
No 6
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=100.00 E-value=3.1e-57 Score=364.79 Aligned_cols=102 Identities=33% Similarity=0.691 Sum_probs=97.0
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCCCCHHHHHHHHHHH
Q 029245 81 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQEC 160 (196)
Q Consensus 81 kkfET~SyLPpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~tD~sqVL~EieeC 160 (196)
.+||||||||||||+||++||+|||+|||+|||||+|++|+ | |+||+|||||||||+|++|||+||++|
T Consensus 3 ~~~etfSyLP~ltdeqI~kQI~Yll~qGw~p~iEf~d~~~~-r----------~~yW~mWkLPmF~~td~~~Vl~Ele~C 71 (138)
T 1bwv_S 3 ITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHP-R----------NAYWEIWGLPLFDVTDPAAVLFEINAC 71 (138)
T ss_dssp CCCSTTTTSCCCCHHHHHHHHHHHHHTTCEEEEEEESCCCT-T----------CCCCEECSSCBCSCCCHHHHHHHHHHH
T ss_pred eecceeccCCCCCHHHHHHHHHHHHHCCCeeeEEecCCCCC-c----------cCEEeccCCCCcCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999866 4 999999999999999999999999999
Q ss_pred HHHCCCCeEEEEeeecCCCeE--EEEEEEecCCCC
Q 029245 161 KKAYPNAYIRCLAFNNQKQGQ--CMSFLIQKPTTT 193 (196)
Q Consensus 161 ~k~~P~~YVRLiGfDn~rQvq--~~sfIV~RP~~~ 193 (196)
+++|||+|||||||||++|+| |+|||||||.+.
T Consensus 72 ~k~~p~~YVRliGfD~~~~~qs~~~sfIV~RP~~~ 106 (138)
T 1bwv_S 72 RKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHE 106 (138)
T ss_dssp HHHCTTSEEEEEEEECCTTTCEEEEEEEEECCSCC
T ss_pred HHHCCCCeEEEEEEeCCCceEEEEEEEEEECCCCC
Confidence 999999999999999999655 999999999754
No 7
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=100.00 E-value=3.5e-57 Score=364.87 Aligned_cols=102 Identities=36% Similarity=0.768 Sum_probs=97.3
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCCCCHHHHHHHHHHH
Q 029245 81 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQEC 160 (196)
Q Consensus 81 kkfET~SyLPpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~tD~sqVL~EieeC 160 (196)
.+||||||||||||+||++||+|||+|||+|||||+|++|+ | |+||+|||||||||+|++|||+||++|
T Consensus 3 ~~~etfSyLP~ltdeqI~kQI~YlL~qGw~p~lE~~d~~~~-r----------~~yW~mWkLPmF~~td~~~Vl~Ele~C 71 (139)
T 1bxn_I 3 ITQGTFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHP-R----------NTYWEMFGLPMFDLRDAAGILMEINNA 71 (139)
T ss_dssp CCCSBTTTSSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCT-T----------CCCCEESSSCBTTCCCHHHHHHHHHHH
T ss_pred eecceeccCCCCCHHHHHHHHHHHHHCCCeEEEEeccCCcc-c----------cCEEeecCCCCcCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999866 4 999999999999999999999999999
Q ss_pred HHHCCCCeEEEEeeecCCCeE--EEEEEEecCCCC
Q 029245 161 KKAYPNAYIRCLAFNNQKQGQ--CMSFLIQKPTTT 193 (196)
Q Consensus 161 ~k~~P~~YVRLiGfDn~rQvq--~~sfIV~RP~~~ 193 (196)
+|+|||+|||||||||++|+| |+|||||||.+.
T Consensus 72 ~k~~p~~YVRliGfD~~~~~qs~~~sfIV~RP~~~ 106 (139)
T 1bxn_I 72 RNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADE 106 (139)
T ss_dssp HHHCSSSEEEEEEECTTTCCEEEEEECCCCGGGSC
T ss_pred HHHCCCCeEEEEEEeCCCceEEEEEEEEEECCCCC
Confidence 999999999999999999766 999999999653
No 8
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=100.00 E-value=9.5e-56 Score=356.14 Aligned_cols=101 Identities=34% Similarity=0.704 Sum_probs=95.8
Q ss_pred ccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCCCCHHHHHHHHHHHH
Q 029245 82 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 161 (196)
Q Consensus 82 kfET~SyLPpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~tD~sqVL~EieeC~ 161 (196)
..|||||||||||+||.+||+|||+|||+|||||+|++|+ | |+||+|||||||||+|++|||+||++|+
T Consensus 4 t~~tfSyLP~ltd~qI~kQI~YlL~qGw~~~iEf~d~~~~-r----------~~yW~mWkLPmFg~~d~~~Vl~Ele~C~ 72 (138)
T 4f0h_B 4 TQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHP-R----------NSFWEMWGLPLFEVTDPAPVLFEINACR 72 (138)
T ss_dssp CCSTTTTSCCCCHHHHHHHHHHHHHTTCEEEEEEESCCCT-T----------CCCCEESSCCBCSCCSHHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCCCC-c----------CCEEeecCCCCcCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999865 3 9999999999999999999999999999
Q ss_pred HHCCCCeEEEEeeecCCCe--EEEEEEEecCCCC
Q 029245 162 KAYPNAYIRCLAFNNQKQG--QCMSFLIQKPTTT 193 (196)
Q Consensus 162 k~~P~~YVRLiGfDn~rQv--q~~sfIV~RP~~~ 193 (196)
|+|||+|||||||||++|+ ||+|||||||++.
T Consensus 73 k~~p~~YVRliGfDn~~~~qs~~~sfIV~RP~~e 106 (138)
T 4f0h_B 73 KAKSNFYIKVVGFSSERGIESTIISFIVNRPKHE 106 (138)
T ss_dssp HHTTTSEEEEEEEECCTTTCEEEEEEEEECCSCC
T ss_pred HHCCCCeEEEEEEeCCCceEEEEEEEEEeCCCCC
Confidence 9999999999999999976 6999999999864
No 9
>3frm_A Uncharacterized conserved protein; APC61048, staphylococcus epidermidis ATCC structural genomics, PSI-2, protein structure initiative; HET: MES; 2.32A {Staphylococcus epidermidis}
Probab=87.94 E-value=0.73 Score=37.24 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=42.5
Q ss_pred HhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCCCCHHHHHHHHHHHHH---HCCCCeEEEE
Q 029245 105 LKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK---AYPNAYIRCL 172 (196)
Q Consensus 105 L~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~tD~sqVL~EieeC~k---~~P~~YVRLi 172 (196)
+..| .+=.|.++-- +|| +...|.||++.||.+++.|- ..+...+|+.|.+ +++..+++++
T Consensus 13 ~~~~-~~~~~~~~~~-~~~-~~~~p~~y~~N~~~~~~~p~-----~~~~~~~i~~~~~~~~~~~~~~~~~~ 75 (254)
T 3frm_A 13 YIDG-NKITEDSRKA-IYL-LPPQPLKYASNTWIYKTMPT-----MNQWLKDIEVQKKMHLNQSSYHLSFS 75 (254)
T ss_dssp CCCS-EEEEECSSEE-EEE-CTTCTTCGGGSEEEESSCCC-----HHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hccC-ceEEecCcEE-Eec-CCccccccccceEEEecCCC-----HHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 4455 4444544432 345 67889999999999999886 7788777777755 4577788886
No 10
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=62.10 E-value=5.4 Score=29.65 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=39.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCC-CCHHHHHHHHHHHHHHCCCC
Q 029245 89 LPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGC-NDSSQILNEIQECKKAYPNA 167 (196)
Q Consensus 89 LPpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~-tD~sqVL~EieeC~k~~P~~ 167 (196)
-|+||++||.+.+..|...||..- .+.....| +| +.+-|.. -+--.-++++.|-..-||+-
T Consensus 5 ~~~Ls~~ei~~~L~~L~~~gW~~~---~~~~~l~r-----------~f----~F~~f~~a~~F~~~Va~~AE~~~HHPdi 66 (104)
T 3hxa_A 5 AHRLSAEERDQLLPNLRAVGWNEL---EGRDAIFK-----------QF----HFKDFNRAFGFMSRVALQAEKLDHHPEW 66 (104)
T ss_dssp CCCCCHHHHHHHSHHHHTTTCEEC---SSSSCEEE-----------EE----ECSSHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred CccCCHHHHHHHHhhCCCCCCEEe---cCCCeEEE-----------EE----EeCCHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 489999999999999888899852 11122333 11 3333321 12234467788888889986
Q ss_pred eE
Q 029245 168 YI 169 (196)
Q Consensus 168 YV 169 (196)
.+
T Consensus 67 ~~ 68 (104)
T 3hxa_A 67 FN 68 (104)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 11
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=55.89 E-value=7 Score=26.65 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=15.9
Q ss_pred CCCChHHHHHHHHHHHhC
Q 029245 90 PSLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~q 107 (196)
+.|||+||..=+.||++|
T Consensus 66 ~~Lsd~ei~~v~~yi~~~ 83 (83)
T 1cc5_A 66 ADCSDDELKAAIGKMSGL 83 (83)
T ss_dssp SSCCHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 369999999999999875
No 12
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=51.64 E-value=11 Score=27.93 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=37.6
Q ss_pred CCCCChHHHHHHHHHHHhCCCeeEEEeccCC-ceeecCCCCCCccCCcceeecCCCCCCC-CCHHHHHHHHHHHHHHCCC
Q 029245 89 LPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG-YVHRENSKMPGYYDGRYWTMWKLPMFGC-NDSSQILNEIQECKKAYPN 166 (196)
Q Consensus 89 LPpLs~~qI~kQV~ylL~qGw~pclEfad~~-~~~R~~~~sp~yyd~rYWtMWKLPmFg~-tD~sqVL~EieeC~k~~P~ 166 (196)
-|+||++||.+.+..|...||... +.+ ...| +| +.+=|.. -+--.-++++.|...-||+
T Consensus 7 ~~~Ls~~ei~~~L~~l~~~gW~~~----~~~~~i~r-----------~f----~F~~f~~a~~F~~~Va~~Ae~~~HHPd 67 (105)
T 1ru0_A 7 AQWLTAEERDQLIPGLKAAGWSEL----SERDAIYK-----------EF----SFKNFNQAFGFMSRVALQAEKMNHHPE 67 (105)
T ss_dssp CSBCCHHHHHHHHHHHHHTTCEEC----SSSSCEEE-----------EE----ECSSHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred CCCCCHHHHHHHHHhCCCCCCeEE----CCCCeEEE-----------EE----EeCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 488999999999998887899862 211 2323 11 2222221 1233456677777778998
Q ss_pred Ce
Q 029245 167 AY 168 (196)
Q Consensus 167 ~Y 168 (196)
-.
T Consensus 68 i~ 69 (105)
T 1ru0_A 68 WF 69 (105)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 13
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=46.68 E-value=11 Score=24.93 Aligned_cols=22 Identities=18% Similarity=0.566 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHCCCCeEE
Q 029245 149 DSSQILNEIQECKKAYPNAYIR 170 (196)
Q Consensus 149 D~sqVL~EieeC~k~~P~~YVR 170 (196)
+.+.+|.||+.-+..+..+|||
T Consensus 15 ~~D~lLDeId~vLE~NAeeFV~ 36 (44)
T 3m91_B 15 ETDDLLDEIDDVLEENAEDFVR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHTC-----
T ss_pred hHHHHHHHHHHHHHHhHHHHHH
Confidence 5678999999999999999998
No 14
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=46.41 E-value=19 Score=26.17 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeecC
Q 029245 149 DSSQILNEIQECKKAYPNAYIRCLAFNNQ 177 (196)
Q Consensus 149 D~sqVL~EieeC~k~~P~~YVRLiGfDn~ 177 (196)
+..+.|.+|.+.++.+|+.-|+|.|+-..
T Consensus 31 ~~~~~L~~~a~~l~~~~~~~i~I~GhtD~ 59 (123)
T 3oon_A 31 KEYKKIDLIAKLLEKFKKNNILIEGHTEQ 59 (123)
T ss_dssp GGHHHHHHHHHHHHHSCSCCEEEEECCCS
T ss_pred HHHHHHHHHHHHHHHCCCceEEEEEEeCC
Confidence 45789999999999999999999998543
No 15
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=45.62 E-value=15 Score=23.91 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=15.8
Q ss_pred CCCChHHHHHHHHHHHhC
Q 029245 90 PSLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~q 107 (196)
..||++||..=+.||.++
T Consensus 64 ~~ls~~ei~~l~~yl~~~ 81 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLDQ 81 (86)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 568999999999999874
No 16
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=45.03 E-value=22 Score=25.89 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeec
Q 029245 149 DSSQILNEIQECKKAYPNAYIRCLAFNN 176 (196)
Q Consensus 149 D~sqVL~EieeC~k~~P~~YVRLiGfDn 176 (196)
+..+.|.+|.+.++.+|+.-|+|.|+-.
T Consensus 28 ~~~~~L~~~a~~l~~~~~~~i~I~GhtD 55 (123)
T 3td3_A 28 QYKPEIAKVAEKLSEYPNATARIEGHTD 55 (123)
T ss_dssp GGHHHHHHHHHHHHHSTTCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEEeC
Confidence 4668899999999999999999999844
No 17
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=43.57 E-value=22 Score=25.96 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeecC
Q 029245 149 DSSQILNEIQECKKAYPNAYIRCLAFNNQ 177 (196)
Q Consensus 149 D~sqVL~EieeC~k~~P~~YVRLiGfDn~ 177 (196)
+..+.|.+|.+.++.+|+.-|+|.|+-..
T Consensus 20 ~~~~~L~~ia~~l~~~p~~~i~I~GhtD~ 48 (118)
T 2hqs_H 20 DFAQMLDAHANFLRSNPSYKVTVEGHADE 48 (118)
T ss_dssp GGHHHHHHHHHHHHHCTTCCEEEEECCCS
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEECCC
Confidence 45689999999999999999999998543
No 18
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=42.03 E-value=18 Score=23.40 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHHHHHh
Q 029245 90 PSLSDDSIAKEIDYMLK 106 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~ 106 (196)
..||++||..=+.||..
T Consensus 63 ~~ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 63 GRLVDEDIEDAANYVLS 79 (85)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 36899999999999986
No 19
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.60 E-value=32 Score=25.68 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=21.7
Q ss_pred ccCCCCCChHHHHHHHHHHHhCCCeeEEEecc
Q 029245 86 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE 117 (196)
Q Consensus 86 ~SyLPpLs~~qI~kQV~ylL~qGw~pclEfad 117 (196)
++|.| +...|.+.|++||.++| ||=.+
T Consensus 59 l~F~p--~~~~IKk~IE~LIereY---leR~~ 85 (101)
T 2do7_A 59 LKFPV--KPADLKKRIESLIDRDY---MERDK 85 (101)
T ss_dssp CSSCC--CHHHHHHHHHHHHHTTS---EEECS
T ss_pred cCCCC--CHHHHHHHHHHHhhhhH---HhcCC
Confidence 44666 78899999999999999 55553
No 20
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=39.44 E-value=21 Score=24.30 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCe
Q 029245 89 LPSLSDDSIAKEIDYMLKKGWI 110 (196)
Q Consensus 89 LPpLs~~qI~kQV~ylL~qGw~ 110 (196)
||+-.|..|..+|..|++.|+.
T Consensus 2 ~p~~~D~rl~~al~qMl~MGF~ 23 (52)
T 1q02_A 2 SPPEADPRLIESLSQMLSMGFS 23 (52)
T ss_dssp CCTTSCHHHHHHHHHHHTTTCC
T ss_pred CCCCcChHHHHHHHHHHHcCCC
Confidence 7999999999999999999953
No 21
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=38.80 E-value=18 Score=24.03 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=16.0
Q ss_pred CCCChHHHHHHHHHHHhC
Q 029245 90 PSLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~q 107 (196)
+.|||+||..=+.||.++
T Consensus 63 ~~Lsd~ei~~l~~Yi~~~ 80 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSKA 80 (81)
T ss_dssp SSCCHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHHHHc
Confidence 579999999999999875
No 22
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=38.18 E-value=22 Score=23.12 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=15.8
Q ss_pred CCCChHHHHHHHHHHHhC
Q 029245 90 PSLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~q 107 (196)
+.|||+||..=++||.+.
T Consensus 61 ~~Ls~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLTL 78 (79)
T ss_dssp TTSCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 578999999999999764
No 23
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=37.00 E-value=31 Score=25.93 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeecC
Q 029245 149 DSSQILNEIQECKKAYPNAYIRCLAFNNQ 177 (196)
Q Consensus 149 D~sqVL~EieeC~k~~P~~YVRLiGfDn~ 177 (196)
+..+.|.+|.+.++.+|+..|+|.|+-..
T Consensus 44 ~~~~~L~~ia~~L~~~p~~~i~I~GhtD~ 72 (134)
T 2aiz_P 44 EYVQILDAHAAYLNATPAAKVLVEGNTDE 72 (134)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHCCCceEEEEEEECC
Confidence 45678999999999999999999998543
No 24
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=36.66 E-value=31 Score=22.40 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.3
Q ss_pred CCCChHHHHHHHHHHHhC
Q 029245 90 PSLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~q 107 (196)
..||++||..=+.||.++
T Consensus 65 ~~ls~~ei~~l~~yl~~~ 82 (88)
T 3dmi_A 65 GRLSDEEIANVAAYVLAS 82 (88)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 358999999999999763
No 25
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=36.45 E-value=27 Score=25.75 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeec
Q 029245 149 DSSQILNEIQECKKAYPNAYIRCLAFNN 176 (196)
Q Consensus 149 D~sqVL~EieeC~k~~P~~YVRLiGfDn 176 (196)
+..+.|.+|.+.++.+|+..|+|.|+-.
T Consensus 38 ~~~~~L~~ia~~l~~~~~~~i~I~GhtD 65 (129)
T 2kgw_A 38 ADYEILNRVADKLKACPDARVTINGYTD 65 (129)
T ss_dssp HHHHHHHHHHHHHHTCTTSCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEEeC
Confidence 4568899999999999999999999854
No 26
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=35.09 E-value=24 Score=22.98 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.7
Q ss_pred CCCChHHHHHHHHHHHhC
Q 029245 90 PSLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~q 107 (196)
..|||+||..=+.||.+.
T Consensus 63 ~~Ls~~ei~~l~~yl~~l 80 (81)
T 1a56_A 63 VNVSDADAKALADWILTL 80 (81)
T ss_dssp CSSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 578999999999999763
No 27
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=34.28 E-value=28 Score=28.40 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=29.5
Q ss_pred CCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCC
Q 029245 91 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLP 143 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLP 143 (196)
-|+.+.+..=+++|.++| -.|+.|.+ + +++|-+|+-|
T Consensus 68 ~Ls~e~~~~il~~L~~~g---~aew~d~~---~----------~~~~I~Wrt~ 104 (176)
T 3cuq_C 68 KLPVESIQIVLEELRKKG---NLEWLDKS---K----------SSFLIMWRRP 104 (176)
T ss_dssp ECCHHHHHHHHHHHHHHT---SEEECSSS---S----------SEEEECSSCH
T ss_pred cCCHHHHHHHHHHHHhcC---CceeecCC---C----------CEEEEEeCCH
Confidence 578888888889999998 47887765 2 5789999865
No 28
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=33.72 E-value=24 Score=26.19 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=19.5
Q ss_pred ccccCCCCCChHHHHHHHHHHHhC
Q 029245 84 EALSYLPSLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 84 ET~SyLPpLs~~qI~kQV~ylL~q 107 (196)
..+.++..||++||..=+.||+.+
T Consensus 99 ~~mp~~~~Lsd~ei~~laaYl~~~ 122 (135)
T 1e29_A 99 DIYPEMRNYTEDDIFDVAGYTLIA 122 (135)
T ss_dssp TTCGGGTTCCHHHHHHHHHHHHHH
T ss_pred hcccccccCCHHHHHHHHHHHHhc
Confidence 345556689999999999999864
No 29
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=33.22 E-value=27 Score=22.96 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=15.1
Q ss_pred CCChHHHHHHHHHHHhC
Q 029245 91 SLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~q 107 (196)
.|||+||..=+.||.++
T Consensus 61 ~Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 61 RADREDLVKAIEYMLST 77 (78)
T ss_dssp TBCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 58999999999999865
No 30
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=32.86 E-value=19 Score=22.33 Aligned_cols=13 Identities=54% Similarity=0.805 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhC
Q 029245 95 DSIAKEIDYMLKK 107 (196)
Q Consensus 95 ~qI~kQV~ylL~q 107 (196)
.||.|+|.|||.+
T Consensus 5 aqikkeiayllak 17 (35)
T 1rh4_A 5 AQIKKEIAYLLAK 17 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999864
No 31
>3h20_A Replication protein B; primase, nucleotidyltransferase, helix-bundle-domain, replic RSF1010; 1.99A {Plasmid RSF1010} PDB: 3h25_A
Probab=32.58 E-value=53 Score=29.51 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=43.0
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCCCCHHHHHHHHHHHHHH-C-
Q 029245 87 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKA-Y- 164 (196)
Q Consensus 87 SyLPpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~tD~sqVL~EieeC~k~-~- 164 (196)
-.+=+|+.+.| +-|.+.||.|++=-+ +|| |+|--.|.++-+ +...+-.++..-++. |
T Consensus 74 vliDDL~~~~L----~~L~a~g~~Pa~VvE----------TSP----GnyQa~~~v~~~---~~~~~~~~~ak~La~~~G 132 (323)
T 3h20_A 74 VLVDDLSEFDL----DDMKAEGREPALVVE----------TSP----KNYQAWVKVADA---AGGELRGQIARTLASEYD 132 (323)
T ss_dssp EEEEEECHHHH----HHHHHTTCCCSEEEE----------EET----TEEEEEEECCSC---CCHHHHHHHHHHHHHHTT
T ss_pred EEeecCChhhH----HHHHhCCCCCeeEEe----------cCC----CCeeEEEEeCCC---CCHHHHHHHHHHHHHHhC
Confidence 33456666554 566778887774333 345 556556777444 233455555444443 3
Q ss_pred -------CCCeEEEEeeecCC
Q 029245 165 -------PNAYIRCLAFNNQK 178 (196)
Q Consensus 165 -------P~~YVRLiGfDn~r 178 (196)
.++|-||-||-|.+
T Consensus 133 GDP~~sd~~r~~RlPGF~N~K 153 (323)
T 3h20_A 133 ADPASADSRHYGRLAGFTNRK 153 (323)
T ss_dssp CCGGGCSTTCCEECTTSBCCC
T ss_pred CCCcccCCcccccCCCcccCC
Confidence 58999999998863
No 32
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=31.82 E-value=24 Score=23.03 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.7
Q ss_pred CCCChHHHHHHHHHHHhC
Q 029245 90 PSLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~q 107 (196)
..||++||..=+.||.++
T Consensus 70 ~~ls~~ei~~l~~yl~~l 87 (93)
T 3dr0_A 70 GRLSDADIANVAAYIADQ 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 568999999999999864
No 33
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=31.73 E-value=21 Score=25.93 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=35.3
Q ss_pred CCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCC-CCHHHHHHHHHHHHHHCCCCe
Q 029245 90 PSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGC-NDSSQILNEIQECKKAYPNAY 168 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~-tD~sqVL~EieeC~k~~P~~Y 168 (196)
|+||++||.+.+..| .||..- .+.....| +| +.+-|.. -+--.-++++.|-..-||+-.
T Consensus 4 ~~Ls~~ei~~~L~~l--~gW~~~---~~~~~l~r-----------~f----~f~~f~~a~~f~~~Va~~Ae~~~HHPdi~ 63 (97)
T 3jst_A 4 NRLTESEMNEALRAL--DGWQKV---DGREAITR-----------SF----KFKDFSTAFGFMAQAALYAEKLDHHPEWF 63 (97)
T ss_dssp SCCCHHHHHHHHHTS--TTCEEC---TTSSCEEE-----------EE----ECSSHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CCCCHHHHHHHhhcC--CCCeEe---CCCCeEEE-----------EE----EeCCHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 789999999888765 799753 11112333 12 3433322 122344577777888889754
No 34
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=31.68 E-value=33 Score=25.74 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEeeecCC
Q 029245 149 DSSQILNEIQECKKAYP-NAYIRCLAFNNQK 178 (196)
Q Consensus 149 D~sqVL~EieeC~k~~P-~~YVRLiGfDn~r 178 (196)
+..++|.+|.+.++.+| +..|+|.|+=...
T Consensus 18 ~~~~~L~~ia~~l~~~p~~~~i~I~GhtD~~ 48 (138)
T 3cyp_B 18 DMMLYIERIAKIIQKLPKRVHINVRGFTDDT 48 (138)
T ss_dssp HHHHHHHHHHHHHTTSCTTCEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEecCCC
Confidence 46789999999999999 9999999985443
No 35
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=31.13 E-value=33 Score=23.13 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=17.1
Q ss_pred CCCCCChHHHHHHHHHHHhC
Q 029245 88 YLPSLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 88 yLPpLs~~qI~kQV~ylL~q 107 (196)
|...||++||..=+.||.+.
T Consensus 75 ~~~~ls~~ei~~l~~yl~~~ 94 (105)
T 2ce0_A 75 FGPRLQDEEIKLLAEFVKFQ 94 (105)
T ss_dssp SSCCBCHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHh
Confidence 44689999999999999875
No 36
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=31.02 E-value=36 Score=21.68 Aligned_cols=18 Identities=6% Similarity=0.028 Sum_probs=15.9
Q ss_pred CCCChHHHHHHHHHHHhC
Q 029245 90 PSLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~q 107 (196)
..||++||..=+.||.++
T Consensus 53 ~~ls~~ei~~l~~yl~~~ 70 (71)
T 1c75_A 53 GIAKGAEAEAVAAWLAEK 70 (71)
T ss_dssp CSSCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 468999999999999875
No 37
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=31.02 E-value=38 Score=21.85 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=15.3
Q ss_pred CCChHHHHHHHHHHHhC
Q 029245 91 SLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~q 107 (196)
.||++||..=+.||...
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLSQ 81 (82)
T ss_dssp CCCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 79999999999999864
No 38
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=30.53 E-value=35 Score=22.22 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=14.4
Q ss_pred CCChHHHHHHHHHHHh
Q 029245 91 SLSDDSIAKEIDYMLK 106 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~ 106 (196)
.||++||..=+.||..
T Consensus 68 ~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 68 RLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5899999999999975
No 39
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=29.94 E-value=39 Score=21.97 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=15.4
Q ss_pred CCChHHHHHHHHHHHhC
Q 029245 91 SLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~q 107 (196)
.|||+||..=+.||.+.
T Consensus 63 ~Lsd~ei~~l~~yl~~l 79 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILSI 79 (80)
T ss_dssp CCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 69999999999999875
No 40
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=29.21 E-value=27 Score=22.55 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.6
Q ss_pred CCCChHHHHHHHHHHHhC
Q 029245 90 PSLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~q 107 (196)
..|||+||..=+.||.+.
T Consensus 69 ~~ls~~ei~~l~~yl~sl 86 (87)
T 2zxy_A 69 KGLSDAELKALADFILSH 86 (87)
T ss_dssp GGCCHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 468999999999999764
No 41
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=29.09 E-value=78 Score=22.61 Aligned_cols=29 Identities=3% Similarity=0.043 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHH-HCCCCeEEEEee
Q 029245 146 GCNDSSQILNEIQECKK-AYPNAYIRCLAF 174 (196)
Q Consensus 146 g~tD~sqVL~EieeC~k-~~P~~YVRLiGf 174 (196)
...|..++.....+..+ .+++.-||+||+
T Consensus 69 pt~~~~~i~~~a~~Ll~~~~~~~~vRllGV 98 (115)
T 1unn_C 69 PRLNKADLIATARKTWDERRGGRGVRLVGL 98 (115)
T ss_dssp SBCCHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred CcCCHHHHHHHHHHHHHhhhcCCCEEEEEE
Confidence 34566666666666665 567778999997
No 42
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=28.67 E-value=49 Score=24.99 Aligned_cols=29 Identities=14% Similarity=0.418 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeecC
Q 029245 149 DSSQILNEIQECKKAYPNAYIRCLAFNNQ 177 (196)
Q Consensus 149 D~sqVL~EieeC~k~~P~~YVRLiGfDn~ 177 (196)
+..+.|.+|.+.++.+|+.-|+|.|+-..
T Consensus 48 ~~~~~L~~ia~~L~~~~~~~i~I~GhtD~ 76 (149)
T 2k1s_A 48 AGANTLTGVAMVLKEYPKTAVNVIGYTDS 76 (149)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEEcCC
Confidence 45688999999999999999999998543
No 43
>3iyk_G VP2; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=28.54 E-value=52 Score=31.83 Aligned_cols=54 Identities=24% Similarity=0.539 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHHhCCCe----------------eEEEeccCCcee-ecCCCCCCccCCcceeecCCCCCCCC
Q 029245 91 SLSDDSIAKEIDYMLKKGWI----------------PCLEFDEVGYVH-RENSKMPGYYDGRYWTMWKLPMFGCN 148 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~qGw~----------------pclEfad~~~~~-R~~~~sp~yyd~rYWtMWKLPmFg~t 148 (196)
.++++.-.+=|+-+|+.||. --++|+.+.+.- |.+-+.|.|||-.= +.|||++.
T Consensus 459 k~De~kY~eMi~riI~gGW~~k~fk~~kIl~e~gni~~~DFeKDAyld~~s~lvlP~YYdKwI----~spmf~ak 529 (600)
T 3iyk_G 459 KFDDVAYGQMINEMINGGWNQEQFKMHKILKSEGNVLTIDFEKDAKLTTNEGVTMPEYFNKWI----IAPMFNAK 529 (600)
T ss_pred ecCHHHHHHHHHHHHhCCccccccchhheeccCCceEEEEecceeeecCCCcEeCccccccee----ecccccce
Confidence 35666667779999999995 245677543221 34448899999744 78999986
No 44
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=28.12 E-value=76 Score=26.03 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=39.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCCCCHHHHHHH-HHHHHHHCCCC
Q 029245 89 LPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE-IQECKKAYPNA 167 (196)
Q Consensus 89 LPpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~tD~sqVL~E-ieeC~k~~P~~ 167 (196)
-|+++++++.++++.+.+.|... ++ | . -+..|++..+..+++.+ |+.+++..|+.
T Consensus 54 g~~~~~~~~~~~~~~~~~~~~l~--~~-----------------d--~---v~~G~l~~~~~~~~v~~~l~~~~~~~~~~ 109 (289)
T 3pzs_A 54 GCVMPASHLTDIVQGIADIDRLK--DC-----------------D--A---VLSGYIGSPEQGSHILAAVAQVKQANPDA 109 (289)
T ss_dssp EEECCHHHHHHHHHHHHHTTCGG--GC-----------------C--E---EEECCCSSHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccCCHHHHHHHHHHHHhcCCcc--CC-----------------C--E---EEECCCCCHHHHHHHHHHHHHHHhhCCCC
Confidence 37889999999999887655311 00 1 1 24556665555555555 67788878873
Q ss_pred eEEEEeeecC
Q 029245 168 YIRCLAFNNQ 177 (196)
Q Consensus 168 YVRLiGfDn~ 177 (196)
.++ +||+
T Consensus 110 --~vv-~DPV 116 (289)
T 3pzs_A 110 --WYF-CDPV 116 (289)
T ss_dssp --EEE-ECCC
T ss_pred --eEE-EcCc
Confidence 344 8964
No 45
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=27.13 E-value=46 Score=25.02 Aligned_cols=29 Identities=10% Similarity=0.509 Sum_probs=25.8
Q ss_pred CCChHHHHHHHHHHHhCCCeeEEEeccCC
Q 029245 91 SLSDDSIAKEIDYMLKKGWIPCLEFDEVG 119 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~qGw~pclEfad~~ 119 (196)
..++++....++.|.++|++-|+.|.+.+
T Consensus 27 ~Ise~~~~~il~~L~d~GyI~Gv~~~~~~ 55 (102)
T 2hgc_A 27 GVTEDQFDDAVNFLKREGYIIGVHYSDDR 55 (102)
T ss_dssp TSCHHHHHHHHHHHHHHTSEECCEESSSS
T ss_pred CCCHHHHHHHHHHHHHCCCccceEEEeCc
Confidence 36889999999999999999999998763
No 46
>2plc_A PI-PLC, phosphatidylinositol-specific phospholipase C; hydrolase, phospholipid degradation, virulence factor of human pathogen; 2.00A {Listeria monocytogenes} SCOP: c.1.18.2 PDB: 1aod_A*
Probab=27.11 E-value=39 Score=28.37 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCeEEEE
Q 029245 147 CNDSSQILNEIQECKKAYPNAYIRCL 172 (196)
Q Consensus 147 ~tD~sqVL~EieeC~k~~P~~YVRLi 172 (196)
+....+||.||.+.+.+||++.|=|.
T Consensus 79 ~~~~~~~L~~i~~fL~~~P~EvVil~ 104 (274)
T 2plc_A 79 NASLSGVLETITQFLKKNPKETIIMR 104 (274)
T ss_dssp EEEHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEE
Confidence 55678999999999999999987554
No 47
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=26.94 E-value=1e+02 Score=21.73 Aligned_cols=66 Identities=11% Similarity=0.280 Sum_probs=39.9
Q ss_pred cCCccccccccCCCCCCh-HHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCCCCHHHHHH
Q 029245 77 PINNKKFEALSYLPSLSD-DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 155 (196)
Q Consensus 77 p~~~kkfET~SyLPpLs~-~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~tD~sqVL~ 155 (196)
|++.++++++ +-.|++ +++.+.| ++|=..-|+|-.. | |..-.+...
T Consensus 11 ~~~~~~~~~m--v~~l~~~~~f~~~~----~~~k~vvv~F~a~---------------------w------C~~C~~~~p 57 (125)
T 1r26_A 11 GIRMRARYPS--VVDVYSVEQFRNIM----SEDILTVAWFTAV---------------------W------CGPCKTIER 57 (125)
T ss_dssp -CCCSSCCSC--CEEECCHHHHHHHH----HSSSCEEEEEECT---------------------T------CHHHHHTHH
T ss_pred ceeeeccccc--eEECCCHHHHHHHH----ccCCEEEEEEECC---------------------c------CHhHHHHHH
Confidence 5556667676 667888 7776654 5664555665432 2 333334455
Q ss_pred HHHHHHHHCCCCeEEEEeeecC
Q 029245 156 EIQECKKAYPNAYIRCLAFNNQ 177 (196)
Q Consensus 156 EieeC~k~~P~~YVRLiGfDn~ 177 (196)
++++-.++|++ |+++.+|-.
T Consensus 58 ~l~~l~~~~~~--v~~~~vd~d 77 (125)
T 1r26_A 58 PMEKIAYEFPT--VKFAKVDAD 77 (125)
T ss_dssp HHHHHHHHCTT--SEEEEEETT
T ss_pred HHHHHHHHCCC--CEEEEEECC
Confidence 56666778876 777877754
No 48
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=26.91 E-value=21 Score=26.35 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=34.8
Q ss_pred CCCChHHHHHHHHHHHhCCCeeEEEeccCC-ceeecCCCCCCccCCcceeecCCCCCCC-CCHHHHHHHHHHHHHHCCCC
Q 029245 90 PSLSDDSIAKEIDYMLKKGWIPCLEFDEVG-YVHRENSKMPGYYDGRYWTMWKLPMFGC-NDSSQILNEIQECKKAYPNA 167 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~qGw~pclEfad~~-~~~R~~~~sp~yyd~rYWtMWKLPmFg~-tD~sqVL~EieeC~k~~P~~ 167 (196)
|+||++||.+.+..| .||... +.+ ...| + |+.+=|.. -+--.-++++.|...-||+-
T Consensus 7 ~~Ls~~ei~~~L~~l--~gW~~~----~~~~~i~r-----------~----f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi 65 (104)
T 2v6u_A 7 LAANSARLLQLHKTV--PQWHLT----DGHLSIKR-----------K----FQFSDFNEAWGFMSRVALYADKVDHHPNW 65 (104)
T ss_dssp CCTTCHHHHHHHTTS--TTSEEC----GGGCCEEE-----------E----EECSSHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred CCCCHHHHHHHhhcC--CCCeEe----CCcCeEEE-----------E----EEeCCHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 789999999887765 699852 221 2333 1 13332222 12334566777777778985
Q ss_pred eE
Q 029245 168 YI 169 (196)
Q Consensus 168 YV 169 (196)
.+
T Consensus 66 ~~ 67 (104)
T 2v6u_A 66 YN 67 (104)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 49
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=26.73 E-value=82 Score=26.82 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=25.5
Q ss_pred cceeecCCCCCCCCCHHHHHHH-HHHHHHHCCCCeEEEEeee
Q 029245 135 RYWTMWKLPMFGCNDSSQILNE-IQECKKAYPNAYIRCLAFN 175 (196)
Q Consensus 135 rYWtMWKLPmFg~tD~sqVL~E-ieeC~k~~P~~YVRLiGfD 175 (196)
.+|+.|. ..+..++++| |++..++|||.-|.+.-++
T Consensus 66 t~w~~~~-----~~~~~~~~~~~i~~F~~~~p~I~V~~~~~~ 102 (456)
T 4g68_A 66 TFWNLFT-----GEPAKTKVKEIIDQWNKENPNVQIVESVTE 102 (456)
T ss_dssp EEEECCC-----STTHHHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred EEeeCCC-----CchHHHHHHHHHHHHHHHCcCeEEEEEECC
Confidence 4787663 2345566777 7889999999888876543
No 50
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=26.35 E-value=41 Score=21.95 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=15.4
Q ss_pred CCChHHHHHHHHHHHhC
Q 029245 91 SLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~q 107 (196)
.||++||..=+.||.++
T Consensus 67 ~ls~~ei~~l~~yi~~~ 83 (85)
T 3cu4_A 67 MIPPADALKIGEYVVAS 83 (85)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 69999999999999865
No 51
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=26.21 E-value=35 Score=28.13 Aligned_cols=33 Identities=6% Similarity=0.301 Sum_probs=23.5
Q ss_pred CCCCCCHH--HHHHHHHHHHHHCCCCeEEEEeeecCC
Q 029245 144 MFGCNDSS--QILNEIQECKKAYPNAYIRCLAFNNQK 178 (196)
Q Consensus 144 mFg~tD~s--qVL~EieeC~k~~P~~YVRLiGfDn~r 178 (196)
.|..+|.. .|++++++.-.. |+. |-+||||+..
T Consensus 192 I~~~~d~~a~Gv~~a~~e~g~~-P~d-v~viG~D~~~ 226 (318)
T 2fqx_A 192 IFQVAGGTGNGVIKEARDRRLN-GQD-VWVIGVDRDQ 226 (318)
T ss_dssp EEEECGGGHHHHHHHHHHHHHT-TCC-CEEEEEESCC
T ss_pred EEECCCCCchHHHHHHHhhhhc-cCC-cEEEEEecch
Confidence 34455643 778888777667 765 8999999863
No 52
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=26.01 E-value=44 Score=25.95 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=21.6
Q ss_pred ccccccccCCCCCChHHHHHHHHHHHhCCCee
Q 029245 80 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIP 111 (196)
Q Consensus 80 ~kkfET~SyLPpLs~~qI~kQV~ylL~qGw~p 111 (196)
.|||.+ .++.+..+-.|+++||+++||..
T Consensus 121 ~Kk~~~---~~~~~~~~k~K~~~~L~rrGF~~ 149 (162)
T 3dfg_A 121 RRRFGE---DGPVDLAQRRKAADLLARRGFDG 149 (162)
T ss_dssp HHHHCT---TCCCSHHHHHHHHHHHHHTTCCH
T ss_pred HHhcCC---CCCCCHHHHHHHHHHHHHCCCCH
Confidence 367766 23456678889999999999853
No 53
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=24.91 E-value=50 Score=21.76 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=16.5
Q ss_pred CCCChHHHHHHHHHHHhCC
Q 029245 90 PSLSDDSIAKEIDYMLKKG 108 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~qG 108 (196)
..|||+||..=+.||.+..
T Consensus 65 ~~ls~~ei~~l~~yl~~l~ 83 (87)
T 1cno_A 65 TALSDADIANLAAYYASNP 83 (87)
T ss_dssp TTCCHHHHHHHHHHHHHSC
T ss_pred hhCCHHHHHHHHHHHHhCC
Confidence 4689999999999998764
No 54
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=24.64 E-value=63 Score=22.80 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHhCCCe
Q 029245 93 SDDSIAKEIDYMLKKGWI 110 (196)
Q Consensus 93 s~~qI~kQV~ylL~qGw~ 110 (196)
+..+|.+.|+.||.++|.
T Consensus 46 ~~~~IKk~IE~LIereYl 63 (77)
T 3tdu_C 46 RVPVIKKCIDILIEKEYL 63 (77)
T ss_dssp CHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHhhhHh
Confidence 889999999999999984
No 55
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=24.37 E-value=56 Score=20.90 Aligned_cols=17 Identities=6% Similarity=0.253 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHHHhC
Q 029245 91 SLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~q 107 (196)
.||++||..=+.||...
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 1cch_A 65 PVTEEEAKILAEWVLSL 81 (82)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 69999999999999864
No 56
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=24.06 E-value=36 Score=27.89 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=25.3
Q ss_pred HhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCC
Q 029245 105 LKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLP 143 (196)
Q Consensus 105 L~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLP 143 (196)
|++|=.+=|+|+++.++. +.+.||-|-|||
T Consensus 131 Lh~GDsIflnft~~~qV~---------k~nTYfGi~kL~ 160 (166)
T 2r32_A 131 LHVGDTIDLIFNSEHQVL---------KNNTYWGIILLA 160 (166)
T ss_dssp ECTTCEEEEEESSGGGBC---------TTSCEEEEEEEE
T ss_pred ecCCCEEEEEeCCHHHcc---------ccCceEEEEEcC
Confidence 778999999999988874 258899999983
No 57
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=24.02 E-value=47 Score=21.58 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.9
Q ss_pred CCCChHHHHHHHHHHHh
Q 029245 90 PSLSDDSIAKEIDYMLK 106 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~ 106 (196)
..|||+||..=+.||.+
T Consensus 62 ~~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSK 78 (79)
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 35899999999999975
No 58
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=23.56 E-value=1.4e+02 Score=21.32 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=46.6
Q ss_pred ccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCCCCCCHHHHHHHHHHHHHH
Q 029245 84 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKA 163 (196)
Q Consensus 84 ET~SyLPpLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmFg~tD~sqVL~EieeC~k~ 163 (196)
+.|.-+..++.+++.+.++-|+.+|=+.++.=.+..+ |....+|.-| ..+++..|++-+++
T Consensus 21 ~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~l---------~~~l~~~L~~yH~~ 81 (135)
T 2v9v_A 21 QEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLY----------AISTERYQAW---------WQAVTRALEEFHSR 81 (135)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEETTEEE----------EEEHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCcEEEEecCCCeE----------EecHHHHHHH---------HHHHHHHHHHHHHh
Confidence 4455566788999999999999999777664212110 2335676655 45899999999999
Q ss_pred CCCC
Q 029245 164 YPNA 167 (196)
Q Consensus 164 ~P~~ 167 (196)
||..
T Consensus 82 ~P~~ 85 (135)
T 2v9v_A 82 YPLR 85 (135)
T ss_dssp CTTS
T ss_pred CCCc
Confidence 9985
No 59
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A
Probab=23.49 E-value=29 Score=31.62 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCCC--CCCCHHH---HHHHHHHHHHHCCCC
Q 029245 93 SDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF--GCNDSSQ---ILNEIQECKKAYPNA 167 (196)
Q Consensus 93 s~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPmF--g~tD~sq---VL~EieeC~k~~P~~ 167 (196)
+-++.+..|+|+-.-+ .-++++.| +++.+ |.=|.-+||.+|--+-. |-.++.+ ...+.....|++++-
T Consensus 134 ~~~ea~d~veY~n~~~---~t~w~~lR---a~~G~-~eP~~vkyweiGNE~~g~~g~~~~~~Y~~~~~~~a~a~k~~~dp 206 (496)
T 2vrq_A 134 TVQEMSEWVEYITFDG---ESPMANWR---RENGR-EKPWRIKYWGVGNQNWGCGGNMRAEYYADLYRQFQTYLRNYGDN 206 (496)
T ss_dssp CHHHHHHHHHHHHCCS---BSHHHHHH---HHTTC-CSCCCCCEEEECSCTTTTTTCCCHHHHHHHHHHHHHTCCCCTTC
T ss_pred cHHHHHHHHHHhCCCC---CChHHHHH---HHcCC-CCCCCceEEEEcCcccccCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4588899999986543 24444433 33321 33477899998887632 2234444 455677777778676
Q ss_pred eEEEEe
Q 029245 168 YIRCLA 173 (196)
Q Consensus 168 YVRLiG 173 (196)
-|+||+
T Consensus 207 ~i~~ia 212 (496)
T 2vrq_A 207 KLHKIA 212 (496)
T ss_dssp CCEEEE
T ss_pred CeEEEE
Confidence 788875
No 60
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.49 E-value=52 Score=25.32 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=21.0
Q ss_pred ccccccccCCCCCChHHHHHHHHHHHhCCCee
Q 029245 80 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIP 111 (196)
Q Consensus 80 ~kkfET~SyLPpLs~~qI~kQV~ylL~qGw~p 111 (196)
.|||.+ .+ +-+..+-.|+++||+++|+..
T Consensus 119 ~kk~~~--~~-~~~~~~~~K~~~~L~rrGF~~ 147 (159)
T 3c1d_A 119 TRKYGE--PL-PTVFSEKVKIQRFLLYRGYLM 147 (159)
T ss_dssp HHHHCS--SC-CCSHHHHHHHHHHHHHTTCCH
T ss_pred HHHcCC--CC-CCCHHHHHHHHHHHHHCCCCH
Confidence 367765 22 334567889999999999854
No 61
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=23.38 E-value=49 Score=22.89 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=15.1
Q ss_pred CCChHHHHHHHHHHHhC
Q 029245 91 SLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~q 107 (196)
.|||+||..=+.||+++
T Consensus 81 ~Lsd~ei~~l~~Yi~~~ 97 (99)
T 3dp5_A 81 MIPPADALKIGEYVVAS 97 (99)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 59999999999999863
No 62
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=22.81 E-value=53 Score=23.09 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=22.8
Q ss_pred eeeeccCCccccccccC-CCCCChHHHHHHHHHH
Q 029245 72 MKTWNPINNKKFEALSY-LPSLSDDSIAKEIDYM 104 (196)
Q Consensus 72 m~vw~p~~~kkfET~Sy-LPpLs~~qI~kQV~yl 104 (196)
.++--.-..++|||+-- =|.|++|++..-|+-+
T Consensus 35 ~l~vr~d~~r~YE~m~Il~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 35 VMVVASTTPGRYEVNIVLNPNLDQSQLQNEKEII 68 (77)
T ss_dssp EEEEECSSTTEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHhccCCCceEEEEEECCCCCHHHHHHHHHHH
Confidence 34444556689999544 4889999988766543
No 63
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=22.48 E-value=72 Score=26.50 Aligned_cols=45 Identities=24% Similarity=0.184 Sum_probs=29.6
Q ss_pred CCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCC
Q 029245 91 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLP 143 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLP 143 (196)
-|+.+.+..=+++|+++|. .|+.|++.. + .+++ =.+++|-+|+-|
T Consensus 84 rLs~e~~~~Il~~Lv~~g~---aew~d~~~~-~---~~~~-~k~~~~I~Wrtp 128 (202)
T 1xb4_A 84 SVSQVFIDEIWSQMTKEGK---CLPIDQSGR-R---SSNT-TTTRYFILWKSL 128 (202)
T ss_dssp ECCHHHHHHHHHHHHHTTS---EEEESSSSB-C---C--C-CCCEEEECSSCH
T ss_pred cCCHHHHHHHHHHHHhcCC---eEEeCCCCc-c---cccc-cCceEEEEeCCH
Confidence 5788888888899999994 677765421 1 0111 014799999864
No 64
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=22.05 E-value=64 Score=25.11 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeecC
Q 029245 149 DSSQILNEIQECKKAYPNAYIRCLAFNNQ 177 (196)
Q Consensus 149 D~sqVL~EieeC~k~~P~~YVRLiGfDn~ 177 (196)
+..++|.+|.+.++.||+.-|+|.|+-..
T Consensus 68 ~~~~~L~~la~~l~~~~~~~i~I~GhTD~ 96 (169)
T 3ldt_A 68 ICYPGLNNVIRLLNFYPQSTIYVAGFTDN 96 (169)
T ss_dssp HHCHHHHHHHHHHTTCTTSCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEeEeCC
Confidence 34578999999999999999999998544
No 65
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=21.93 E-value=74 Score=23.05 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHhCCCe
Q 029245 93 SDDSIAKEIDYMLKKGWI 110 (196)
Q Consensus 93 s~~qI~kQV~ylL~qGw~ 110 (196)
+...|.+.|++||.++|.
T Consensus 58 ~~~~IKk~IE~LIekeYl 75 (88)
T 3o2p_E 58 KVSMVKRAIDSLIQKGYL 75 (88)
T ss_dssp CHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHhhhHH
Confidence 899999999999999984
No 66
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}
Probab=21.78 E-value=67 Score=26.24 Aligned_cols=16 Identities=6% Similarity=0.115 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHHC
Q 029245 149 DSSQILNEIQECKKAY 164 (196)
Q Consensus 149 D~sqVL~EieeC~k~~ 164 (196)
+.+++.+||+.+.+..
T Consensus 99 s~~~~~~ei~~~~~~l 114 (254)
T 2vyo_A 99 SQDALENNVDREIDTI 114 (254)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6889999999998764
No 67
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A
Probab=21.44 E-value=1.3e+02 Score=27.96 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeecCCCC----CCCCCHHH---HHHH-HHHHHHHC
Q 029245 93 SDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM----FGCNDSSQ---ILNE-IQECKKAY 164 (196)
Q Consensus 93 s~~qI~kQV~ylL~qGw~pclEfad~~~~~R~~~~sp~yyd~rYWtMWKLPm----Fg~tD~sq---VL~E-ieeC~k~~ 164 (196)
+-++.+..|+|+...+ ..++++.| +++. -|.=|.-+||.+|--+- +|-.++++ ...+ -.+.|+.+
T Consensus 150 ~~~ea~d~veY~n~~~---~t~~~~lR---a~~G-~~~P~~vkyweiGNE~~G~~q~G~~t~e~Y~~~~~~~a~Aik~~d 222 (504)
T 3ug3_A 150 TLDEALHWLEYCNGKG---NTYYAQLR---RKYG-HPEPYNVKFWGIGNEMYGEWQVGHMTADEYARAAKEYTKWMKVFD 222 (504)
T ss_dssp CHHHHHHHHHHHHCCS---SCHHHHHH---HHTT-CCSCCCCCEEEECSSTTSTTSTTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhcCCC---CChHHHHH---HHcC-CCCCCCccEEEecCcccccccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 5789999999998875 23344433 2221 13337789999887642 23334443 3334 45566678
Q ss_pred CCCeEEEEeee
Q 029245 165 PNAYIRCLAFN 175 (196)
Q Consensus 165 P~~YVRLiGfD 175 (196)
|+ |+|||-.
T Consensus 223 P~--I~lia~G 231 (504)
T 3ug3_A 223 PT--IKAIAVG 231 (504)
T ss_dssp TT--CEEEECC
T ss_pred CC--cEEEEEC
Confidence 88 7787754
No 68
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=21.28 E-value=53 Score=21.50 Aligned_cols=17 Identities=12% Similarity=0.470 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHHHhC
Q 029245 91 SLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~q 107 (196)
.||++||..=+.||.++
T Consensus 69 ~ls~~ei~~l~~yl~~~ 85 (87)
T 2zon_G 69 AADEATLRAAVAYMMDA 85 (87)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999999999764
No 69
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=21.27 E-value=85 Score=23.77 Aligned_cols=28 Identities=4% Similarity=0.053 Sum_probs=25.6
Q ss_pred cccccCCCCCChHHHHHHHHHHHhCCCe
Q 029245 83 FEALSYLPSLSDDSIAKEIDYMLKKGWI 110 (196)
Q Consensus 83 fET~SyLPpLs~~qI~kQV~ylL~qGw~ 110 (196)
-.||--+.+++.+++..-|++|+.+||.
T Consensus 56 l~tfGigk~~s~~~w~~lirqLi~~G~L 83 (134)
T 3aaf_A 56 HSLFGTGKDQTESWWKAFSRQLITEGFL 83 (134)
T ss_dssp STTTTTTTTSCHHHHHHHHHHHHHTTSE
T ss_pred CCccCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 3688889999999999999999999984
No 70
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A 3s02_A
Probab=21.12 E-value=68 Score=24.59 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHCCCC-eEEEEeeecC
Q 029245 149 DSSQILNEIQECKKAYPNA-YIRCLAFNNQ 177 (196)
Q Consensus 149 D~sqVL~EieeC~k~~P~~-YVRLiGfDn~ 177 (196)
+..++|.+|.+.++.+|+. -|+|.|+=..
T Consensus 46 ~~~~~L~~ia~~l~~~~~~~~i~I~GhTD~ 75 (166)
T 3s06_A 46 DMMLYIERIAKIIQKLPKRVHINVRGFTDD 75 (166)
T ss_dssp GGHHHHHHHHHHGGGSCTTCEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEeeCC
Confidence 5678999999999999975 8999998543
No 71
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=20.84 E-value=75 Score=20.73 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHHHhC
Q 029245 91 SLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~q 107 (196)
.||++||..=+.||.+.
T Consensus 66 ~ls~~ei~~l~~yl~~~ 82 (90)
T 1cyi_A 66 RLSEEEIQAVAEYVFKQ 82 (90)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 58999999999999764
No 72
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=20.72 E-value=64 Score=24.05 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHC--CCCeEEEEeeecC
Q 029245 149 DSSQILNEIQECKKAY--PNAYIRCLAFNNQ 177 (196)
Q Consensus 149 D~sqVL~EieeC~k~~--P~~YVRLiGfDn~ 177 (196)
+..++|.+|.+.++.+ |+..|+|.|+-..
T Consensus 36 ~~~~~L~~~a~~l~~~~~~~~~i~I~GhtD~ 66 (148)
T 4erh_A 36 EGQQALDQLYSQLSNLDPKDGSVVVLGFTDR 66 (148)
T ss_dssp HHHHHHHHHHHHHTCCCTTTCEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEEECCC
Confidence 4568899999999999 8999999998543
No 73
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=20.62 E-value=76 Score=20.82 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=15.1
Q ss_pred CCChHHHHHHHHHHHhC
Q 029245 91 SLSDDSIAKEIDYMLKK 107 (196)
Q Consensus 91 pLs~~qI~kQV~ylL~q 107 (196)
.||++||..=+.||.++
T Consensus 69 ~ls~~ei~~l~~yl~~~ 85 (91)
T 1ls9_A 69 RLDEDDIEAVSNYVYDQ 85 (91)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 58999999999999864
No 74
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.49 E-value=1.4e+02 Score=19.61 Aligned_cols=30 Identities=7% Similarity=0.137 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHHHHHhCCCeeEEEeccCC
Q 029245 90 PSLSDDSIAKEIDYMLKKGWIPCLEFDEVG 119 (196)
Q Consensus 90 PpLs~~qI~kQV~ylL~qGw~pclEfad~~ 119 (196)
|.++..-|.+-++.|.+.|++-.+++.+..
T Consensus 48 ~~is~~TVyR~L~~L~~~Glv~~~~~~~~~ 77 (83)
T 2fu4_A 48 EEIGLATVYRVLNQFDDAGIVTRHNFEGGK 77 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHTSEEEEECGGGC
T ss_pred CCCCHhhHHHHHHHHHHCCCeEEEeeCCCc
Confidence 788999999999999999999988887654
No 75
>3ea1_A 1-phosphatidylinositol phosphodiesterase; phosphatidylinositol-specific phospholipase C, PI-PLC, dimer, interfacially impaired; 1.75A {Bacillus thuringiensis} SCOP: c.1.18.2 PDB: 3ea2_A* 3ea3_A 1t6m_A 2or2_A 1gym_A* 1ptd_A 1ptg_A* 7ptd_A 2ptd_A 4ptd_A 3ptd_A 6ptd_A 5ptd_A
Probab=20.09 E-value=64 Score=28.14 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Q 029245 148 NDSSQILNEIQECKKAYPNAYIRCL 172 (196)
Q Consensus 148 tD~sqVL~EieeC~k~~P~~YVRLi 172 (196)
....+||.||.+.+.+||++.|=|.
T Consensus 89 ~~l~dvL~ei~~FL~~hP~EvVil~ 113 (298)
T 3ea1_A 89 VTLHEFINEAKQFLKDNPSETIIMS 113 (298)
T ss_dssp EEHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3579999999999999999988554
Done!