BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029247
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X5M|A Chain A, Solution Structure Of The Core Domain Of Calcyclin Binding
Protein; Siah-Interacting Protein (Sip)
Length = 127
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 47 ITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPRL 103
+ + ++ WDQ ++ VKIYI+L GV Q + ++ F + SFD+ ++ GK+Y L
Sbjct: 18 VKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNL 77
Query: 104 NQEIVPEKSKVLVKPTRVVIMLFK 127
+ I E S VK V+I+ K
Sbjct: 78 LKPISVEGSSKKVKTDTVLILCRK 101
>pdb|2JTT|C Chain C, Solution Structure Of Calcium Loaded S100a6 Bound To C-
Terminal Siah-1 Interacting Protein
pdb|2JTT|D Chain D, Solution Structure Of Calcium Loaded S100a6 Bound To C-
Terminal Siah-1 Interacting Protein
Length = 35
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 26/29 (89%)
Query: 156 GIMDLMKNMYEEGDDEMKRTIAKAWTDAR 184
G+M+++K +YE+GDD+MKRTI KAW ++R
Sbjct: 7 GLMNVLKKIYEDGDDDMKRTINKAWVESR 35
>pdb|2JKI|S Chain S, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
pdb|2JKI|T Chain T, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
pdb|2JKI|U Chain U, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
Length = 90
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 54 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSK 113
+ Q E+V + + +G+ + + +F + V +V G++ + PRL +I+P+K K
Sbjct: 6 YYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVI-EVPGEDAYYLQPRLFGKIIPDKCK 64
Query: 114 VLVKPTRVVIMLFKASKGNWLDLQY 138
V T++ I L KA W L++
Sbjct: 65 YEVLSTKIEICLAKADIITWASLEH 89
>pdb|2XCM|C Chain C, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
Domain
pdb|2XCM|D Chain D, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
Domain
Length = 92
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 54 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSK 113
+ Q E+V + + +G+ + + +F + V +V G++ + PRL +I+P+K K
Sbjct: 7 YYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVI-EVPGEDAYYLQPRLFGKIIPDKCK 65
Query: 114 VLVKPTRVVIMLFKASKGNWLDLQY 138
V T++ I L KA W L++
Sbjct: 66 YEVLSTKIEICLAKADIITWASLEH 90
>pdb|1POI|A Chain A, Crystal Structure Of Glutaconate Coenzyme A-transferase
From Acidaminococcus Fermentans To 2.55 Angstoms
Resolution
pdb|1POI|C Chain C, Crystal Structure Of Glutaconate Coenzyme A-transferase
From Acidaminococcus Fermentans To 2.55 Angstoms
Resolution
Length = 317
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 54 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVP 109
+D DN +K+Y + Q+ +A K+W FD+K HD + N + +N ++VP
Sbjct: 253 YDYDNPFLKVYDKVSKT-QEDFDAFCKEWVFDLKDHD-EYLNKLGATRLINLKVVP 306
>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
Length = 114
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 52 FSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEK 111
+ W Q +V I + ++ V ++ + EF + G++Y L+ I+PE+
Sbjct: 12 YDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLH-PIIPEQ 70
Query: 112 SKVLVKPTRVVIMLFKASKGNWLDLQYKED 141
S V T++ I L K W L+ + D
Sbjct: 71 STFKVLSTKIEIKLKKPEAVRWEKLEGQGD 100
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 28.1 bits (61), Expect = 3.2, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 101 PRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLDLQYKEDKLKP 145
P+LN + P+K P V + FK +G +L+ Q++ D +KP
Sbjct: 411 PKLNVSMKPQKIAPKF-PGTVRQLFFKKIRGQFLNPQFQTDVVKP 454
>pdb|1W8X|M Chain M, Structural Analysis Of Prd1
Length = 83
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 28 GPAPVPTPAKVSSTPALNYITLGSFSWDQDNEKVKIYI 65
GP P+P PA + P LNY G + Q + ++
Sbjct: 11 GPVPIPGPAPTETMPLLNYRVEGRIAGIQQARQFMPFL 48
>pdb|3TX3|A Chain A, Cysz, A Putative Sulfate Permease
pdb|3TX3|B Chain B, Cysz, A Putative Sulfate Permease
Length = 249
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 70 VVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVL 115
V+ + F W +++ D N++ + PR+ E+ ++SK L
Sbjct: 163 VIGQVLWYIFVCWMMSIQYLDYPFDNHKLSFPRMRSELHQQRSKTL 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,022,527
Number of Sequences: 62578
Number of extensions: 243907
Number of successful extensions: 497
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 9
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)