Query 029247
Match_columns 196
No_of_seqs 208 out of 947
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:52:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03088 SGT1, suppressor of 100.0 1.9E-38 4.1E-43 282.0 16.2 141 48-189 155-330 (356)
2 KOG1309 Suppressor of G2 allel 100.0 2.8E-38 6.1E-43 253.4 11.8 140 49-189 3-172 (196)
3 KOG3260 Calcyclin-binding prot 100.0 3.4E-33 7.5E-38 224.3 11.3 152 44-195 69-224 (224)
4 COG5091 SGT1 Suppressor of G2 99.9 1.2E-25 2.7E-30 191.4 7.5 174 6-189 143-344 (368)
5 cd06468 p23_CacyBP p23_like do 99.9 8.1E-22 1.8E-26 143.3 11.1 89 49-137 1-92 (92)
6 cd06488 p23_melusin_like p23_l 99.9 1E-21 2.2E-26 142.3 10.5 86 51-137 2-87 (87)
7 cd06489 p23_CS_hSgt1_like p23_ 99.9 3.9E-21 8.5E-26 137.8 9.2 84 53-137 1-84 (84)
8 cd06465 p23_hB-ind1_like p23_l 99.8 1.2E-20 2.6E-25 141.5 11.9 97 50-149 1-102 (108)
9 cd00237 p23 p23 binds heat sho 99.8 1.7E-19 3.8E-24 135.5 11.9 97 50-149 2-102 (106)
10 cd06466 p23_CS_SGT1_like p23_l 99.8 1.6E-19 3.5E-24 128.4 9.4 84 53-137 1-84 (84)
11 cd06493 p23_NUDCD1_like p23_NU 99.8 4.9E-18 1.1E-22 122.3 9.3 82 52-137 1-85 (85)
12 PF04969 CS: CS domain; Inter 99.7 2.3E-17 4.9E-22 114.9 10.6 77 50-127 1-79 (79)
13 cd06463 p23_like Proteins cont 99.7 4.3E-17 9.2E-22 114.3 9.9 83 54-137 1-84 (84)
14 PF05002 SGS: SGS domain ; In 99.7 1.5E-18 3.3E-23 124.2 2.2 56 132-189 3-58 (82)
15 cd06467 p23_NUDC_like p23_like 99.7 4.6E-17 1E-21 116.2 9.7 82 52-137 1-85 (85)
16 cd06469 p23_DYX1C1_like p23_li 99.7 6.1E-17 1.3E-21 113.8 9.1 78 54-137 1-78 (78)
17 cd06490 p23_NCB5OR p23_like do 99.7 8.2E-17 1.8E-21 116.7 9.8 83 52-137 1-87 (87)
18 cd06494 p23_NUDCD2_like p23-li 99.7 1.8E-16 3.8E-21 116.6 10.3 83 49-136 5-92 (93)
19 cd06495 p23_NUDCD3_like p23-li 99.7 3.3E-16 7.1E-21 117.0 10.9 92 49-141 4-98 (102)
20 KOG2265 Nuclear distribution p 99.7 3.8E-16 8.3E-21 125.4 9.6 129 48-191 17-150 (179)
21 cd06492 p23_mNUDC_like p23-lik 99.6 2.3E-15 4.9E-20 109.3 9.2 82 52-137 1-87 (87)
22 KOG3158 HSP90 co-chaperone p23 99.5 9.7E-14 2.1E-18 111.4 6.7 88 50-140 8-97 (180)
23 KOG1667 Zn2+-binding protein M 99.4 1.1E-12 2.5E-17 111.0 8.3 90 50-140 215-305 (320)
24 cd00298 ACD_sHsps_p23-like Thi 99.2 1.1E-10 2.5E-15 79.5 7.5 73 54-127 1-80 (80)
25 KOG4379 Uncharacterized conser 98.2 2E-06 4.2E-11 78.5 6.3 87 49-140 289-378 (596)
26 COG0071 IbpA Molecular chapero 98.2 2E-05 4.3E-10 62.0 9.9 82 48-130 39-135 (146)
27 cd06472 ACD_ScHsp26_like Alpha 98.0 4.6E-05 1E-09 55.2 8.6 76 51-127 1-92 (92)
28 PF00011 HSP20: Hsp20/alpha cr 97.7 0.00042 9.1E-09 50.5 9.5 77 53-130 1-90 (102)
29 cd06464 ACD_sHsps-like Alpha-c 97.7 0.00029 6.2E-09 49.3 7.8 74 53-127 1-88 (88)
30 cd06471 ACD_LpsHSP_like Group 97.6 0.0004 8.7E-09 50.1 8.3 75 51-127 2-93 (93)
31 cd06475 ACD_HspB1_like Alpha c 97.0 0.0073 1.6E-07 43.4 8.3 72 53-125 4-84 (86)
32 cd06497 ACD_alphaA-crystallin_ 97.0 0.0058 1.3E-07 43.9 7.8 72 55-127 6-86 (86)
33 cd06526 metazoan_ACD Alpha-cry 96.9 0.0061 1.3E-07 43.2 7.2 68 59-127 7-83 (83)
34 cd06479 ACD_HspB7_like Alpha c 96.8 0.0088 1.9E-07 42.7 7.6 72 55-127 4-81 (81)
35 cd06498 ACD_alphaB-crystallin_ 96.8 0.0095 2.1E-07 42.7 7.6 72 56-128 4-84 (84)
36 PRK10743 heat shock protein Ib 96.8 0.02 4.4E-07 44.8 9.9 76 50-128 35-124 (137)
37 cd06470 ACD_IbpA-B_like Alpha- 96.7 0.02 4.3E-07 41.3 9.0 73 52-127 3-90 (90)
38 cd06478 ACD_HspB4-5-6 Alpha-cr 96.6 0.013 2.8E-07 41.8 7.3 71 56-127 4-83 (83)
39 PRK11597 heat shock chaperone 96.3 0.054 1.2E-06 42.7 9.6 75 51-128 34-122 (142)
40 cd06476 ACD_HspB2_like Alpha c 96.1 0.043 9.3E-07 39.2 7.6 70 57-127 5-83 (83)
41 PF08190 PIH1: pre-RNA process 95.7 0.16 3.5E-06 44.3 11.1 65 58-126 260-327 (328)
42 cd06481 ACD_HspB9_like Alpha c 95.5 0.08 1.7E-06 38.0 7.1 68 57-125 5-85 (87)
43 cd06477 ACD_HspB3_Like Alpha c 94.1 0.49 1.1E-05 33.8 8.0 68 56-124 4-80 (83)
44 cd06482 ACD_HspB10 Alpha cryst 93.7 0.42 9.2E-06 34.5 7.1 66 57-123 6-83 (87)
45 PF05455 GvpH: GvpH; InterPro 92.2 1.3 2.9E-05 36.2 8.7 72 55-130 97-170 (177)
46 cd06480 ACD_HspB8_like Alpha-c 89.9 2.9 6.2E-05 30.5 7.9 68 57-125 13-89 (91)
47 PF14098 SSPI: Small, acid-sol 45.5 32 0.0007 23.6 3.3 28 155-182 36-63 (65)
48 PF09829 DUF2057: Uncharacteri 42.7 20 0.00044 28.9 2.3 25 154-178 164-188 (189)
49 PF04818 CTD_bind: RNA polymer 39.4 41 0.00089 22.1 3.1 25 156-180 30-54 (64)
50 TIGR03092 SASP_sspI small, aci 39.0 42 0.00091 23.0 3.0 27 155-181 35-61 (65)
51 PF08158 NUC130_3NT: NUC130/3N 37.9 72 0.0016 20.8 3.9 33 155-187 18-50 (52)
52 KOG3591 Alpha crystallins [Pos 37.1 2.2E+02 0.0049 23.0 8.4 72 57-129 70-150 (173)
53 PF11588 DUF3243: Protein of u 35.6 59 0.0013 23.3 3.5 33 150-182 45-77 (81)
54 PRK02955 small acid-soluble sp 34.7 41 0.00089 23.3 2.5 27 155-181 38-64 (68)
55 COG4856 Uncharacterized protei 33.4 2E+02 0.0044 26.5 7.3 66 62-131 71-138 (403)
56 PF11841 DUF3361: Domain of un 30.6 64 0.0014 26.0 3.4 29 155-183 120-148 (160)
57 PRK02289 4-oxalocrotonate taut 24.9 59 0.0013 21.1 1.9 27 164-190 8-34 (60)
58 PF12100 DUF3576: Domain of un 24.8 1.5E+02 0.0033 22.1 4.2 36 44-79 25-66 (103)
59 KOG3247 Uncharacterized conser 24.4 42 0.00092 31.2 1.4 82 50-137 4-89 (466)
60 PRK02220 4-oxalocrotonate taut 24.4 74 0.0016 20.3 2.3 26 164-189 8-33 (61)
61 PF02809 UIM: Ubiquitin intera 22.5 71 0.0015 16.2 1.5 15 169-183 4-18 (18)
62 PF01361 Tautomerase: Tautomer 22.1 64 0.0014 20.6 1.6 20 164-183 7-26 (60)
63 PF12690 BsuPI: Intracellular 21.4 3E+02 0.0064 19.3 6.6 56 61-119 2-59 (82)
64 TIGR00013 taut 4-oxalocrotonat 20.9 79 0.0017 20.3 1.9 24 166-189 10-33 (63)
65 COG3354 FlaG Putative archaeal 20.5 2.8E+02 0.0061 22.1 5.1 59 61-127 70-130 (154)
66 cd00491 4Oxalocrotonate_Tautom 20.4 83 0.0018 19.7 1.9 25 165-189 8-32 (58)
No 1
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=100.00 E-value=1.9e-38 Score=281.97 Aligned_cols=141 Identities=23% Similarity=0.388 Sum_probs=125.0
Q ss_pred ccCceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEEEe
Q 029247 48 TLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFK 127 (196)
Q Consensus 48 ~i~ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K 127 (196)
...||+|||+.+.|+|+||++++.++++.|+|++++|+|++...++..|.+.+ +||++|+|+.|+|+|.+.||||+|+|
T Consensus 155 ~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~Kiei~l~K 233 (356)
T PLN03088 155 PKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQP-RLFGKIIPDKCKYEVLSTKIEIRLAK 233 (356)
T ss_pred CccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecc-cccccccccccEEEEecceEEEEEec
Confidence 35789999999999999999999999999999999999999766777899975 99999999999999999999999999
Q ss_pred CCCCCccccccccccc-----------------------CCCCCC------------CCCCchhHHHHHHHHhcCCCHHH
Q 029247 128 ASKGNWLDLQYKEDKL-----------------------KPNLDK------------ERDPMAGIMDLMKNMYEEGDDEM 172 (196)
Q Consensus 128 ~~~~~W~~L~~~~~~~-----------------------kp~wd~------------~~d~~~~l~~lfkkiY~~~dddt 172 (196)
+++.+|++|+..+... +.|||+ +.+++++||+||||||++|||||
T Consensus 234 ~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~f~~iY~~~d~d~ 313 (356)
T PLN03088 234 AEPITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQNADEDT 313 (356)
T ss_pred CCCCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHHHHHHHhcCCHHH
Confidence 9988999998654210 127974 12457899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 029247 173 KRTIAKAWTDARSGKTA 189 (196)
Q Consensus 173 kRam~Ks~~ES~g~~~~ 189 (196)
||||||||+|||||.++
T Consensus 314 rram~KSf~eS~gt~ls 330 (356)
T PLN03088 314 RRAMMKSFVESNGTVLS 330 (356)
T ss_pred HHHHHHHhhhcCCeEEe
Confidence 99999999999999985
No 2
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-38 Score=253.43 Aligned_cols=140 Identities=27% Similarity=0.444 Sum_probs=123.9
Q ss_pred cCceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEEEeC
Q 029247 49 LGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKA 128 (196)
Q Consensus 49 i~ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~ 128 (196)
..||+|||+.+.|+|+|+.++|..+++.|.|+++.|++.+...+|..|.+.. +|||+|+|+.|+|++.+.||||+|.|.
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~-~L~~~I~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQL-KLYHEIIPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhH-HhcccccccceeeEeeeeeEEEEeccc
Confidence 3578999999999999999999999999999999999999777888899865 899999999999999999999999998
Q ss_pred CCCCcccccccccc-----------------cCC--CCCC--------CCCC---chhHHHHHHHHhcCCCHHHHHHHHH
Q 029247 129 SKGNWLDLQYKEDK-----------------LKP--NLDK--------ERDP---MAGIMDLMKNMYEEGDDEMKRTIAK 178 (196)
Q Consensus 129 ~~~~W~~L~~~~~~-----------------~kp--~wd~--------~~d~---~~~l~~lfkkiY~~~dddtkRam~K 178 (196)
+...|..|+++... .+| |||+ ++++ +|+||+|||+||+++|||+||||||
T Consensus 82 ~~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~e~l~dAAl~~lF~kiY~~addDvrRAM~K 161 (196)
T KOG1309|consen 82 EIIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEEDEKLEDAALNKLFQKIYSDADDDVRRAMMK 161 (196)
T ss_pred cchhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhccchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 77899999954321 022 8975 2344 7899999999999999999999999
Q ss_pred HHHHhCCCCCC
Q 029247 179 AWTDARSGKTA 189 (196)
Q Consensus 179 s~~ES~g~~~~ 189 (196)
||.|||||.+.
T Consensus 162 Sf~ESnGTvLS 172 (196)
T KOG1309|consen 162 SFSESNGTVLS 172 (196)
T ss_pred hhhhcCCeEEe
Confidence 99999999985
No 3
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-33 Score=224.35 Aligned_cols=152 Identities=44% Similarity=0.712 Sum_probs=140.0
Q ss_pred ceecccCceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEE
Q 029247 44 LNYITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVI 123 (196)
Q Consensus 44 ~~~~~i~ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI 123 (196)
.+.+.++.|.|.|+.+.|.+||.+.||..++++|.|++.||.+.+++.+|++|.+.+..|+++|.|+.|+.+|.+..|.|
T Consensus 69 ~yl~~vt~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I 148 (224)
T KOG3260|consen 69 SYLNYVTLYGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLI 148 (224)
T ss_pred hhHHHhhhcCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEE
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcccccccc----cccCCCCCCCCCCchhHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 029247 124 MLFKASKGNWLDLQYKE----DKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTADPLKGY 195 (196)
Q Consensus 124 ~L~K~~~~~W~~L~~~~----~~~kp~wd~~~d~~~~l~~lfkkiY~~~dddtkRam~Ks~~ES~g~~~~~~~~~~ 195 (196)
.++|.+..+|.-|+.-+ ++.+|..|++.||.++||++|++||.+||++|||+|+|+|+||+.++...|.+|.
T Consensus 149 ~~kkVe~~rwd~Lt~~~Ke~Kek~kpsl~ke~DP~~glmnvmKk~YeDGD~~mK~tIaKAWtesr~k~a~g~~~g~ 224 (224)
T KOG3260|consen 149 LCKKVENTRWDYLTQVEKECKEKEKPSLDKETDPSEGLMNVMKKIYEDGDDDMKQTIAKAWTESREKQAKGDTEGL 224 (224)
T ss_pred eehhhhcccchHHHHHHHHHhhccCccccccCChHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhcCCccCC
Confidence 99888888999998533 2468899999999999999999999999999999999999999999998887773
No 4
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=99.92 E-value=1.2e-25 Score=191.40 Aligned_cols=174 Identities=15% Similarity=0.208 Sum_probs=130.6
Q ss_pred eeeeeeeeeechhhcccCCCCCCCCCCCCCCccCCCCcceecccCceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEE
Q 029247 6 RVEAVGFMIENNFLSSMLSKEEGPAPVPTPAKVSSTPALNYITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFD 85 (196)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~ 85 (196)
.||++-.--.|||+-|++.+........ .......+|+|.||...+.|.||.+-+..++|..-++++.|+
T Consensus 143 ~vEs~e~~GD~~~~~S~~sP~~~~~~~q----------E~~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~ 212 (368)
T COG5091 143 PVESIENRGDNNSSHSPISPLKIETAPQ----------ESPKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLS 212 (368)
T ss_pred chhhhhccCccccccCCCCccccccCcc----------cCccceeeeeccccceeEEEEEecCCCCccccceeecCCcce
Confidence 3566555557898877766554332111 122223456999999999999998888888999999999999
Q ss_pred EEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEEEeCCCCCcccccccccc--------------c-----CC-
Q 029247 86 VKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLDLQYKEDK--------------L-----KP- 145 (196)
Q Consensus 86 v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~W~~L~~~~~~--------------~-----kp- 145 (196)
|++....+..+......||++|.|+.+.+++.+.++++.|+|.+...|..|.+..-. . ++
T Consensus 213 I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~ 292 (368)
T COG5091 213 ISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQ 292 (368)
T ss_pred eeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhhhhhhhcccccCccccccccccccccccccCCcccccc
Confidence 998655554443334599999999999999999889999999998899999854310 0 12
Q ss_pred -CCCC-----CCC--CchhHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCC
Q 029247 146 -NLDK-----ERD--PMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTA 189 (196)
Q Consensus 146 -~wd~-----~~d--~~~~l~~lfkkiY~~~dddtkRam~Ks~~ES~g~~~~ 189 (196)
+|++ +.| ....+.+|||+||+++||||||||||||+|||||.+.
T Consensus 293 ~Dw~~l~~~~~~dEe~ps~~dslFqklY~~addDtrRAMmKSf~ESnGTaLS 344 (368)
T COG5091 293 DDWKELMVEDSGDEENPSVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALS 344 (368)
T ss_pred ccHHHhhhhhcccccCchHHHHHHHHHHhcCCchHHHHHHHHHhhcCCceec
Confidence 7854 222 2334677999999999999999999999999999975
No 5
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.87 E-value=8.1e-22 Score=143.28 Aligned_cols=89 Identities=47% Similarity=0.818 Sum_probs=82.0
Q ss_pred cCceEEEecCCEEEEEEEeCCCCC---CCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEE
Q 029247 49 LGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIML 125 (196)
Q Consensus 49 i~ry~W~Qt~~~V~I~I~lk~v~~---~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L 125 (196)
+++|+|+|+.+.|+|+|+++++.. +++.|+|++++|+|.+.+.+|.+|.+.+++||++|+|++|+|++.+++|+|+|
T Consensus 1 ~~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L 80 (92)
T cd06468 1 ITKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL 80 (92)
T ss_pred CceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence 468999999999999999998755 89999999999999997667788999887799999999999999999999999
Q ss_pred EeCCCCCccccc
Q 029247 126 FKASKGNWLDLQ 137 (196)
Q Consensus 126 ~K~~~~~W~~L~ 137 (196)
.|+++++|++|+
T Consensus 81 ~K~~~~~W~~L~ 92 (92)
T cd06468 81 AKKKEKKWESLT 92 (92)
T ss_pred EeCCCCccCccC
Confidence 999989999984
No 6
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.87 E-value=1e-21 Score=142.31 Aligned_cols=86 Identities=24% Similarity=0.309 Sum_probs=79.6
Q ss_pred ceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEEEeCCC
Q 029247 51 SFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASK 130 (196)
Q Consensus 51 ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~ 130 (196)
||+|||+++.|+|+|++++++++++.+.|++++|+|.+...+++.|.+.+ +||++|+|+.|+|++.+++|+|+|+|+++
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l-~L~~~I~~~~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDI-ELWGVIDVEKSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEe-eccceEChhHcEEEecCcEEEEEEEeCCC
Confidence 78999999999999999999999999999999998877544577899987 99999999999999999999999999998
Q ss_pred CCccccc
Q 029247 131 GNWLDLQ 137 (196)
Q Consensus 131 ~~W~~L~ 137 (196)
++|++|+
T Consensus 81 ~~W~~Le 87 (87)
T cd06488 81 GSWAKLE 87 (87)
T ss_pred CcCccCC
Confidence 8999985
No 7
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.85 E-value=3.9e-21 Score=137.79 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=78.7
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEEEeCCCCC
Q 029247 53 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGN 132 (196)
Q Consensus 53 ~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~ 132 (196)
||+|+.+.|+|+|+++++.++++.|+|++++|+|++...++.+|.+.+ +||++|+|++|+|++.+++|+|+|+|+++++
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~ 79 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKL-HLLHPIVPEQSSYKILSTKIEIKLKKTEAIR 79 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEee-ecCceecchhcEEEEeCcEEEEEEEcCCCCC
Confidence 699999999999999999999999999999999999765677899977 9999999999999999999999999998889
Q ss_pred ccccc
Q 029247 133 WLDLQ 137 (196)
Q Consensus 133 W~~L~ 137 (196)
|++|+
T Consensus 80 W~~Le 84 (84)
T cd06489 80 WSKLE 84 (84)
T ss_pred CccCC
Confidence 99985
No 8
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.85 E-value=1.2e-20 Score=141.47 Aligned_cols=97 Identities=28% Similarity=0.402 Sum_probs=84.9
Q ss_pred CceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC-CCceeEeeccccccCccCCCceEEEcCCEEEEEEEeC
Q 029247 50 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-QGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKA 128 (196)
Q Consensus 50 ~ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~-~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~ 128 (196)
|.|+|+||.+.|+|+|+++++ +++.|.|++++|+|++.+. +++.|.+.+ +||++|+|++|+|++.+++|+|+|+|+
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~-~L~~~I~pe~s~~~v~~~kveI~L~K~ 77 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDL-EFYKEIDPEESKYKVTGRQIEFVLRKK 77 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEe-EhhhhccccccEEEecCCeEEEEEEEC
Confidence 358999999999999999987 8899999999999998653 467788866 999999999999999999999999999
Q ss_pred C-CCCccccccccccc---CCCCCC
Q 029247 129 S-KGNWLDLQYKEDKL---KPNLDK 149 (196)
Q Consensus 129 ~-~~~W~~L~~~~~~~---kp~wd~ 149 (196)
+ +++|++|++++.+. +++|+.
T Consensus 78 ~~~~~W~~L~~~~~k~~~~~~d~~~ 102 (108)
T cd06465 78 EAGEYWPRLTKEKGKLPWLKVDFDK 102 (108)
T ss_pred CCCCCCcccccCCCCCCceECCchh
Confidence 9 78999999876543 456655
No 9
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.82 E-value=1.7e-19 Score=135.49 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=84.0
Q ss_pred CceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEEEeCC
Q 029247 50 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS 129 (196)
Q Consensus 50 ~ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~~ 129 (196)
+.+.|+|+.+.|+|+|++++ .+++.|+|++++|+|++.+.+|.+|.+.+ +||++|+|++|++++++++|+|.|+|++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l-~l~~~I~pe~Sk~~v~~r~ve~~L~K~~ 78 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEI-ELYDRVDPNDSKHKRTDRSILCCLRKGK 78 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEE-EeecccCcccCeEEeCCceEEEEEEeCC
Confidence 45799999999999999998 48999999999999998654677888876 9999999999999999999999999998
Q ss_pred CC-Ccccccccccc---cCCCCCC
Q 029247 130 KG-NWLDLQYKEDK---LKPNLDK 149 (196)
Q Consensus 130 ~~-~W~~L~~~~~~---~kp~wd~ 149 (196)
++ +|++|++...+ +++|||+
T Consensus 79 ~~~~WprL~k~~~k~~~lk~Dfdk 102 (106)
T cd00237 79 EGVAWPRLTKEKAKPNWLSVDFDN 102 (106)
T ss_pred CCCCCchhhcCCCCCCcEECcchh
Confidence 65 99999986543 2457776
No 10
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.81 E-value=1.6e-19 Score=128.41 Aligned_cols=84 Identities=35% Similarity=0.515 Sum_probs=77.7
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEEEeCCCCC
Q 029247 53 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGN 132 (196)
Q Consensus 53 ~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~ 132 (196)
+|+|+.+.|+|+|+++++.++++.|.|++++|+|++...++..|.+.+ +||++|+|++|+|++.+++|+|+|+|+++++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~ 79 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLEL-DLFGPIDPEQSKVSVLPTKVEITLKKAEPGS 79 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEec-ccccccCchhcEEEEeCeEEEEEEEcCCCCC
Confidence 699999999999999999999999999999999998653456898877 8999999999999999999999999999899
Q ss_pred ccccc
Q 029247 133 WLDLQ 137 (196)
Q Consensus 133 W~~L~ 137 (196)
|++|+
T Consensus 80 W~~L~ 84 (84)
T cd06466 80 WPSLE 84 (84)
T ss_pred CccCC
Confidence 99985
No 11
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.76 E-value=4.9e-18 Score=122.30 Aligned_cols=82 Identities=21% Similarity=0.420 Sum_probs=71.3
Q ss_pred eEEEecCCEEEEEEEeC-CCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCC-EEEEEEEeCC
Q 029247 52 FSWDQDNEKVKIYISLE-GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPT-RVVIMLFKAS 129 (196)
Q Consensus 52 y~W~Qt~~~V~I~I~lk-~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~-kIeI~L~K~~ 129 (196)
|+|+||.+.|+|+|+++ ++.+++++|.|++++|.|.+.+ +. . +..++||+.|+|++|+|++.++ +|+|+|.|++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~--~~-~-~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~ 76 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKD--QA-P-LLEGKLYSSIDHESSTWIIKENKSLEVSLIKKD 76 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCC--CC-e-EEeCcccCcccccCcEEEEeCCCEEEEEEEECC
Confidence 79999999999999995 8899999999999999998742 22 2 3357999999999999999766 6999999998
Q ss_pred CC-Cccccc
Q 029247 130 KG-NWLDLQ 137 (196)
Q Consensus 130 ~~-~W~~L~ 137 (196)
++ +|++|.
T Consensus 77 ~~~~W~~L~ 85 (85)
T cd06493 77 EGPTWPELV 85 (85)
T ss_pred CCccccccC
Confidence 76 999984
No 12
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.74 E-value=2.3e-17 Score=114.95 Aligned_cols=77 Identities=27% Similarity=0.477 Sum_probs=67.9
Q ss_pred CceEEEecCCEEEEEEEeCCC--CCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEEEe
Q 029247 50 GSFSWDQDNEKVKIYISLEGV--VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFK 127 (196)
Q Consensus 50 ~ry~W~Qt~~~V~I~I~lk~v--~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K 127 (196)
++|+|+|+.+.|+|+|++++. .++++.|.|++++|+|.+...++..|.+.. +||++|+|++|+|++.+++|+|+|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEG-ELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEE-EBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEE-EEeeeEcchhcEEEEECCEEEEEEEC
Confidence 589999999999999999654 589999999999999999765557888865 89999999999999999999999998
No 13
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.72 E-value=4.3e-17 Score=114.31 Aligned_cols=83 Identities=31% Similarity=0.446 Sum_probs=76.4
Q ss_pred EEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEEEeCCC-CC
Q 029247 54 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASK-GN 132 (196)
Q Consensus 54 W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~-~~ 132 (196)
|+|+.+.|+|+|+++++.++++.|.|++++|+|++.+.++..|.+.+ +|+++|+|++|+|++.+++|+|+|.|+.+ .+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~ 79 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEG-ELFGPIDPEESKWTVEDRKIEITLKKKEPGEW 79 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEee-EccCccchhhcEEEEeCCEEEEEEEECCCCCC
Confidence 99999999999999998899999999999999999754457888876 79999999999999999999999999998 69
Q ss_pred ccccc
Q 029247 133 WLDLQ 137 (196)
Q Consensus 133 W~~L~ 137 (196)
|++|+
T Consensus 80 W~~l~ 84 (84)
T cd06463 80 WPRLE 84 (84)
T ss_pred CcccC
Confidence 99984
No 14
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=99.72 E-value=1.5e-18 Score=124.21 Aligned_cols=56 Identities=41% Similarity=0.722 Sum_probs=31.4
Q ss_pred CcccccccccccCCCCCCCCCCchhHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCC
Q 029247 132 NWLDLQYKEDKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTA 189 (196)
Q Consensus 132 ~W~~L~~~~~~~kp~wd~~~d~~~~l~~lfkkiY~~~dddtkRam~Ks~~ES~g~~~~ 189 (196)
.|..|.... ..+.-+++++|+++||+|||+||++|||||||||+|||+||+||.++
T Consensus 3 ~W~~l~~~~--~~~~~~d~~d~~a~lm~lfkkiY~~gDDe~KRam~KSf~ES~GT~LS 58 (82)
T PF05002_consen 3 NWDKLTKKK--EKEEEDDEEDPEASLMNLFKKIYDNGDDEMKRAMMKSFTESQGTVLS 58 (82)
T ss_dssp --SSSBHH----------------SHHHHHHHHHTTS-SCHHHHHHHHHHCT------
T ss_pred ChHHccccc--cccccccccCchHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcccc
Confidence 688888542 11222345678889999999999999999999999999999999985
No 15
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.72 E-value=4.6e-17 Score=116.21 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=72.8
Q ss_pred eEEEecCCEEEEEEEeC-CCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcC-CEEEEEEEeCC
Q 029247 52 FSWDQDNEKVKIYISLE-GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIMLFKAS 129 (196)
Q Consensus 52 y~W~Qt~~~V~I~I~lk-~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~-~kIeI~L~K~~ 129 (196)
|+|+|+.+.|+|+|.++ ++.++++.|+|++++|+|++.+ ..+.+ .++||++|+|++|+|++.+ ++|+|+|.|++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~---~~~~l-~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~ 76 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG---GEPLL-DGELYAKVKVDESTWTLEDGKLLEITLEKRN 76 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC---CCceE-cCcccCceeEcCCEEEEeCCCEEEEEEEECC
Confidence 79999999999999986 6788999999999999999853 23444 5699999999999999999 99999999999
Q ss_pred C-CCccccc
Q 029247 130 K-GNWLDLQ 137 (196)
Q Consensus 130 ~-~~W~~L~ 137 (196)
+ .+|++|.
T Consensus 77 ~~~~W~~L~ 85 (85)
T cd06467 77 EGEWWPSLV 85 (85)
T ss_pred CCccccccC
Confidence 8 5999984
No 16
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.71 E-value=6.1e-17 Score=113.80 Aligned_cols=78 Identities=32% Similarity=0.470 Sum_probs=71.9
Q ss_pred EEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEEEeCCCCCc
Q 029247 54 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNW 133 (196)
Q Consensus 54 W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~W 133 (196)
|+|+.+.|+|+|+++|+.++++.|.++++.|.|++ ..|.+.+ +|+++|+|++|++++.+++|+|+|.|+++++|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~-~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W 74 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFEL-DLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIW 74 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEE-eCcccccccccEEEEeCCEEEEEEEeCCCCcc
Confidence 99999999999999999999999999998887755 3688876 99999999999999999999999999988899
Q ss_pred cccc
Q 029247 134 LDLQ 137 (196)
Q Consensus 134 ~~L~ 137 (196)
++|+
T Consensus 75 ~~L~ 78 (78)
T cd06469 75 EALC 78 (78)
T ss_pred cccC
Confidence 9985
No 17
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.71 E-value=8.2e-17 Score=116.73 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=70.4
Q ss_pred eEEEecCCEEEEEEEeCC--CCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEc--CCEEEEEEEe
Q 029247 52 FSWDQDNEKVKIYISLEG--VVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVK--PTRVVIMLFK 127 (196)
Q Consensus 52 y~W~Qt~~~V~I~I~lk~--v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~--~~kIeI~L~K 127 (196)
||||||++.|+|+||.++ .+..++.+.+..++|++++... +..|.+.+ +||++|+|+. ++++. ++||||+|+|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~-~L~~~I~~~~-~~~~~~~~~KVEI~L~K 77 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHL-DLSNEVQWPC-EVRISTETGKIELVLKK 77 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEee-eccccCCCCc-EEEEcccCceEEEEEEc
Confidence 799999999999999884 5666777888888999988543 66788876 8999998664 88888 5699999999
Q ss_pred CCCCCccccc
Q 029247 128 ASKGNWLDLQ 137 (196)
Q Consensus 128 ~~~~~W~~L~ 137 (196)
+++..|++|.
T Consensus 78 ~e~~~W~~Lg 87 (87)
T cd06490 78 KEPEKWTSLG 87 (87)
T ss_pred CCCCccccCc
Confidence 9988999984
No 18
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.70 E-value=1.8e-16 Score=116.56 Aligned_cols=83 Identities=16% Similarity=0.318 Sum_probs=73.0
Q ss_pred cCceEEEecCCEEEEEEEeC-CCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCE-EEEEEE
Q 029247 49 LGSFSWDQDNEKVKIYISLE-GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTR-VVIMLF 126 (196)
Q Consensus 49 i~ry~W~Qt~~~V~I~I~lk-~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~k-IeI~L~ 126 (196)
..+|.|+||.+.|+|+|.++ ++.++++.|.|++++|.|.+. |.. +..++||+.|+|++|+|++.+++ |+|.|.
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~--~l~G~L~~~I~~destWtled~k~l~I~L~ 79 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE--VLKGKLFDSVVADECTWTLEDRKLIRIVLT 79 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE--EEcCcccCccCcccCEEEEECCcEEEEEEE
Confidence 45789999999999999886 789999999999999999984 333 44689999999999999999998 699999
Q ss_pred eCCCC---Ccccc
Q 029247 127 KASKG---NWLDL 136 (196)
Q Consensus 127 K~~~~---~W~~L 136 (196)
|.+.. +|++|
T Consensus 80 K~~~~~~~~W~sl 92 (93)
T cd06494 80 KSNRDAGNCWKSL 92 (93)
T ss_pred eCCCCCCcccccc
Confidence 98643 99987
No 19
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.69 E-value=3.3e-16 Score=116.97 Aligned_cols=92 Identities=21% Similarity=0.359 Sum_probs=77.9
Q ss_pred cCceEEEecCCEEEEEEEeC-CC-CCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCE-EEEEE
Q 029247 49 LGSFSWDQDNEKVKIYISLE-GV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTR-VVIML 125 (196)
Q Consensus 49 i~ry~W~Qt~~~V~I~I~lk-~v-~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~k-IeI~L 125 (196)
..+|.|.||.++|+|+|.++ ++ ..+++.|+|++++|.|.+.+.++.. .+..++||+.|++++|+|++.+++ |+|+|
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~-~~i~G~L~~~V~~des~Wtled~~~l~I~L 82 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEK-VLMEGEFTHKINTENSLWSLEPGKCVLLSL 82 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCc-eEEeCcccCcccCccceEEEeCCCEEEEEE
Confidence 35789999999999999998 53 5789999999999999997422322 345689999999999999999865 89999
Q ss_pred EeCCCCCccccccccc
Q 029247 126 FKASKGNWLDLQYKED 141 (196)
Q Consensus 126 ~K~~~~~W~~L~~~~~ 141 (196)
.|....+|++|..++.
T Consensus 83 ~K~~~~wW~~v~~g~~ 98 (102)
T cd06495 83 SKCSEVWWNAVLKGEE 98 (102)
T ss_pred EECCCcccchhhCCCC
Confidence 9998779999997763
No 20
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.66 E-value=3.8e-16 Score=125.38 Aligned_cols=129 Identities=20% Similarity=0.365 Sum_probs=99.3
Q ss_pred ccCceEEEecCCEEEEEEEeC-CC-CCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEE
Q 029247 48 TLGSFSWDQDNEKVKIYISLE-GV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIML 125 (196)
Q Consensus 48 ~i~ry~W~Qt~~~V~I~I~lk-~v-~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L 125 (196)
....|.|+||..+|.|.|.++ ++ ...+++|.+..++|.|.+.+ .+ .+.-++|+++|++++|.|++.++++.+++
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg---~~-~ildG~L~~~vk~des~WtiEd~k~i~i~ 92 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKG---QP-PILDGELSHSVKVDESTWTIEDGKMIVIL 92 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCC---CC-ceecCccccccccccceEEecCCEEEEEE
Confidence 456899999999999999986 66 78899999999999998854 33 34468999999999999999999765555
Q ss_pred EeCCC--CCcccccccccccCCCCCCCCCC-chhHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCC
Q 029247 126 FKASK--GNWLDLQYKEDKLKPNLDKERDP-MAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTADP 191 (196)
Q Consensus 126 ~K~~~--~~W~~L~~~~~~~kp~wd~~~d~-~~~l~~lfkkiY~~~dddtkRam~Ks~~ES~g~~~~~~ 191 (196)
.|+.. .||.+|..++..+++ +.-++ .+.+ ++.|+++|.++-|++++++++.++.|
T Consensus 93 l~K~~~~eWW~~ll~gep~ID~---~ki~~e~skl--------~dldeEtra~vekmmfdq~qk~~~~p 150 (179)
T KOG2265|consen 93 LKKSNKMEWWDSLLEGEPEIDT---KKIEPEESKL--------SDLDEETRATVEKMMFDQRQKSMGLP 150 (179)
T ss_pred eeccchHHHHHHHHcCCCCCCc---cccChhhhhh--------hhccHHHHHhhhccchhHHHhhcCCC
Confidence 55444 599999988744333 11223 2222 37788999999999998888887744
No 21
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.62 E-value=2.3e-15 Score=109.28 Aligned_cols=82 Identities=18% Similarity=0.294 Sum_probs=71.2
Q ss_pred eEEEecCCEEEEEEEeC-C--CCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCC-EEEEEEEe
Q 029247 52 FSWDQDNEKVKIYISLE-G--VVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPT-RVVIMLFK 127 (196)
Q Consensus 52 y~W~Qt~~~V~I~I~lk-~--v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~-kIeI~L~K 127 (196)
|.|.||.++|+|+|.++ + +.++++.|++++++|+|.+.+ ....+ .++||++|++++|+|++.++ .|+|+|.|
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g---~~~~i-~G~L~~~V~~des~Wtled~~~l~i~L~K 76 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKG---QPPII-DGELYNEVKVEESSWLIEDGKVVTVNLEK 76 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECC---CceEE-eCcccCcccccccEEEEeCCCEEEEEEEE
Confidence 79999999999999996 3 688999999999999998853 34444 67999999999999999886 69999999
Q ss_pred CCCC-Cccccc
Q 029247 128 ASKG-NWLDLQ 137 (196)
Q Consensus 128 ~~~~-~W~~L~ 137 (196)
..++ +|++|.
T Consensus 77 ~~~~~wW~~l~ 87 (87)
T cd06492 77 INKMEWWSRLV 87 (87)
T ss_pred CCCCccccccC
Confidence 9764 999974
No 22
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=9.7e-14 Score=111.37 Aligned_cols=88 Identities=18% Similarity=0.296 Sum_probs=76.8
Q ss_pred CceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEe-CCCceeEeeccccccCccCCCceEEEcCCEEEEEEEeC
Q 029247 50 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD-VQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKA 128 (196)
Q Consensus 50 ~ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~-~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~ 128 (196)
|...|+|+.+.|+++|.+.+ .++++|.+++..|.|+..+ .++..|.+.| +||++|+|++|++++.++.|.++|+|+
T Consensus 8 p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~~l~fs~k~~~d~~~~~~~i-ef~~eIdpe~sk~k~~~r~if~i~~K~ 84 (180)
T KOG3158|consen 8 PEVKWAQRRDLVYLTVCVED--AKDVHVNLEPSKLTFSCKSGADNHKYENEI-EFFDEIDPEKSKHKRTSRSIFCILRKK 84 (180)
T ss_pred CcchhhhhcCeEEEEEEecc--CccceeeccccEEEEEeccCCCceeeEEee-ehhhhcCHhhccccccceEEEEEEEcc
Confidence 34589999999999999985 4789999999999999865 5667777766 999999999999999998999999999
Q ss_pred CC-CCcccccccc
Q 029247 129 SK-GNWLDLQYKE 140 (196)
Q Consensus 129 ~~-~~W~~L~~~~ 140 (196)
+. .+||+|++..
T Consensus 85 e~~~~WprLtkeK 97 (180)
T KOG3158|consen 85 ELGEYWPRLTKEK 97 (180)
T ss_pred ccccccchhhhcc
Confidence 87 5999999644
No 23
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.39 E-value=1.1e-12 Score=110.95 Aligned_cols=90 Identities=23% Similarity=0.347 Sum_probs=81.2
Q ss_pred CceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEe-CCCceeEeeccccccCccCCCceEEEcCCEEEEEEEeC
Q 029247 50 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD-VQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKA 128 (196)
Q Consensus 50 ~ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~-~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~ 128 (196)
-||+|.||...|+|.||.++..++.-.|+.....|+|.+.. .++..|.+.+ +|++.|++++|++.+..+||||+|+|+
T Consensus 215 cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~-kLwgvvnve~s~v~m~~tkVEIsl~k~ 293 (320)
T KOG1667|consen 215 CRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDY-KLWGVVNVEESSVVMGETKVEISLKKA 293 (320)
T ss_pred chhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccc-eeeeeechhhceEEeecceEEEEEecc
Confidence 47899999999999999998877888888888889988854 5677888877 999999999999999999999999999
Q ss_pred CCCCcccccccc
Q 029247 129 SKGNWLDLQYKE 140 (196)
Q Consensus 129 ~~~~W~~L~~~~ 140 (196)
+++.|++|....
T Consensus 294 ep~sWa~Le~p~ 305 (320)
T KOG1667|consen 294 EPGSWARLEFPP 305 (320)
T ss_pred CCCCcccccCCH
Confidence 999999999754
No 24
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.17 E-value=1.1e-10 Score=79.47 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=66.1
Q ss_pred EEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC-------CCceeEeeccccccCccCCCceEEEcCCEEEEEEE
Q 029247 54 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-------QGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLF 126 (196)
Q Consensus 54 W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~-------~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~ 126 (196)
|+|+.+.++|+|+++++.++++.|.++++.|.|++... ....|.+.+ .|++.|+++.+++.+.++.|+|.|.
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~-~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSF-ELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEE-ECCCCcCHHHCEEEEECCEEEEEEc
Confidence 89999999999999999999999999999999998642 246788876 7999999999999999999999998
Q ss_pred e
Q 029247 127 K 127 (196)
Q Consensus 127 K 127 (196)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 25
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=98.25 E-value=2e-06 Score=78.49 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=74.4
Q ss_pred cCceEEEecCCEEEEEEEeCC-CCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcC-CEEEEEEE
Q 029247 49 LGSFSWDQDNEKVKIYISLEG-VVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIMLF 126 (196)
Q Consensus 49 i~ry~W~Qt~~~V~I~I~lk~-v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~-~kIeI~L~ 126 (196)
-+.|.|.|+.+.+.+++.++. .+.+++.|.+..++|.+.+.. +.+.-+.||..|..+.|.|.+.. +++++.|.
T Consensus 289 ~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~d-----h~~~~g~lyasv~he~s~~ii~ean~Le~sl~ 363 (596)
T KOG4379|consen 289 PPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHLD-----HVIFDGELYASVGHELSAFIIAEANGLELSLT 363 (596)
T ss_pred CccceeeeccCcceEEEecccccccceEEEEecCceEEEEeee-----eEEeccchhhhccccchhhhhhhhccceEEEe
Confidence 367999999999999999985 478889999999988887743 45556899999999999999875 79999999
Q ss_pred eCCCC-Ccccccccc
Q 029247 127 KASKG-NWLDLQYKE 140 (196)
Q Consensus 127 K~~~~-~W~~L~~~~ 140 (196)
|++++ .|++|..++
T Consensus 364 K~de~~twprL~~~d 378 (596)
T KOG4379|consen 364 KADEIQTWPRLFAQD 378 (596)
T ss_pred ecccccccchheeec
Confidence 99776 999998654
No 26
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2e-05 Score=62.01 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=69.7
Q ss_pred ccCceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCC---------------CceeEeeccccccCccCCCc
Q 029247 48 TLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ---------------GKNYRFTSPRLNQEIVPEKS 112 (196)
Q Consensus 48 ~i~ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~---------------~~~y~l~~~~L~~~I~pe~S 112 (196)
..+.|+.+++++.+.|++.++|+.+++|.|.++++.|.|+....+ ...|.-.+ .|...|+++..
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~-~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTF-RLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEE-ECcccccccce
Confidence 456789999999999999999999999999999999999985432 13455545 89999999988
Q ss_pred eEEEcCCEEEEEEEeCCC
Q 029247 113 KVLVKPTRVVIMLFKASK 130 (196)
Q Consensus 113 ~~kv~~~kIeI~L~K~~~ 130 (196)
.-+...+-|+|+|.|..+
T Consensus 118 ~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeEeeCcEEEEEEecccc
Confidence 888999999999999765
No 27
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=98.02 E-value=4.6e-05 Score=55.15 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=61.7
Q ss_pred ceEEEecCCEEEEEEEeCCCCCCCcEEEEEee-EEEEEEEeC-----CC----------ceeEeeccccccCccCCCceE
Q 029247 51 SFSWDQDNEKVKIYISLEGVVQDKMEAEFKQW-SFDVKFHDV-----QG----------KNYRFTSPRLNQEIVPEKSKV 114 (196)
Q Consensus 51 ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~-sl~v~i~~~-----~~----------~~y~l~~~~L~~~I~pe~S~~ 114 (196)
+++|+++++.+.|.+.++|+.++++.|.+..+ .|.|+.... .+ ..|.-.+ .|-..|+++..+.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i-~LP~~v~~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRF-RLPENADADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEE-ECCCCCCHHHCEE
Confidence 46999999999999999999999999999875 788887421 11 1344444 7888999998888
Q ss_pred EEcCCEEEEEEEe
Q 029247 115 LVKPTRVVIMLFK 127 (196)
Q Consensus 115 kv~~~kIeI~L~K 127 (196)
.+..+-|+|+|.|
T Consensus 80 ~~~nGvL~I~lPK 92 (92)
T cd06472 80 FLENGVLTVTVPK 92 (92)
T ss_pred EEECCEEEEEecC
Confidence 8999999999876
No 28
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.72 E-value=0.00042 Score=50.55 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=59.7
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC----CC---------ceeEeeccccccCccCCCceEEEcCC
Q 029247 53 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV----QG---------KNYRFTSPRLNQEIVPEKSKVLVKPT 119 (196)
Q Consensus 53 ~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~----~~---------~~y~l~~~~L~~~I~pe~S~~kv~~~ 119 (196)
||.++++.+.|.+.++|+.++++.|.+.++.|.|+.... ++ ..|.-.+ .|-..++++.-+.++..+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~-~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSI-RLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEE-E-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEE-cCCCcCCcceEEEEecCC
Confidence 689999999999999999999999999999999888432 11 2344444 788899999888899999
Q ss_pred EEEEEEEeCCC
Q 029247 120 RVVIMLFKASK 130 (196)
Q Consensus 120 kIeI~L~K~~~ 130 (196)
.|.|++.|...
T Consensus 80 vL~I~~pk~~~ 90 (102)
T PF00011_consen 80 VLTITIPKKEE 90 (102)
T ss_dssp EEEEEEEBSSS
T ss_pred EEEEEEEcccc
Confidence 99999999764
No 29
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.68 E-value=0.00029 Score=49.32 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=61.8
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCC--------------CceeEeeccccccCccCCCceEEEcC
Q 029247 53 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ--------------GKNYRFTSPRLNQEIVPEKSKVLVKP 118 (196)
Q Consensus 53 ~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~--------------~~~y~l~~~~L~~~I~pe~S~~kv~~ 118 (196)
+++++.+.+.|.+.++|+.++++.|.+.++.|.|+..... ...|...+ .|-..|+++..+..+..
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~-~LP~~vd~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSF-RLPEDVDPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEE-ECCCCcCHHHcEEEEeC
Confidence 3678899999999999999999999999999999863211 24466655 79999999988999999
Q ss_pred CEEEEEEEe
Q 029247 119 TRVVIMLFK 127 (196)
Q Consensus 119 ~kIeI~L~K 127 (196)
+.++|++.|
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999875
No 30
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.64 E-value=0.0004 Score=50.12 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=59.0
Q ss_pred ceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCC-----C------------ceeEeeccccccCccCCCce
Q 029247 51 SFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ-----G------------KNYRFTSPRLNQEIVPEKSK 113 (196)
Q Consensus 51 ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~-----~------------~~y~l~~~~L~~~I~pe~S~ 113 (196)
+.+++++++.+.|.+.++|+.++++.|.+.++.|.|+..... . ..|.-.+ .|- .|+++..+
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~-~lp-~v~~~~i~ 79 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSF-YLP-NVDEEEIK 79 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEE-ECC-CCCHHHCE
Confidence 568999999999999999999999999999999999774311 0 0122223 453 68888888
Q ss_pred EEEcCCEEEEEEEe
Q 029247 114 VLVKPTRVVIMLFK 127 (196)
Q Consensus 114 ~kv~~~kIeI~L~K 127 (196)
.++.++-+.|+|.|
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 88999999999876
No 31
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.96 E-value=0.0073 Score=43.43 Aligned_cols=72 Identities=7% Similarity=0.102 Sum_probs=58.1
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCC---C-----ceeEeeccccccCccCCCceEEEc-CCEEEE
Q 029247 53 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ---G-----KNYRFTSPRLNQEIVPEKSKVLVK-PTRVVI 123 (196)
Q Consensus 53 ~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~---~-----~~y~l~~~~L~~~I~pe~S~~kv~-~~kIeI 123 (196)
+++.+++.+.|.+.++|+.++++.|.+.++.|.|+..... . ..|.-.+ .|-..|++++.+-.+. ++-+.|
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f-~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKY-TLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEE-ECCCCCCHHHcEEEECCCCeEEE
Confidence 6889999999999999999999999999999999884321 1 1244333 7888999998888887 888887
Q ss_pred EE
Q 029247 124 ML 125 (196)
Q Consensus 124 ~L 125 (196)
+|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 76
No 32
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.96 E-value=0.0058 Score=43.94 Aligned_cols=72 Identities=10% Similarity=0.136 Sum_probs=57.9
Q ss_pred EecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CCc-----eeEeeccccccCccCCCceEEE-cCCEEEEEE
Q 029247 55 DQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK-----NYRFTSPRLNQEIVPEKSKVLV-KPTRVVIML 125 (196)
Q Consensus 55 ~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~---~~~-----~y~l~~~~L~~~I~pe~S~~kv-~~~kIeI~L 125 (196)
+.+++.+.|.+.++|+.++++.|++.++.|.|+.... .+. +|.-.+ .|-..|+++.-+-++ .++.+.|+|
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~-~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRY-RLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEE-ECCCCCChHHeEEEeCCCCEEEEEe
Confidence 5688999999999999999999999999999987421 111 233333 788999999888888 688999998
Q ss_pred Ee
Q 029247 126 FK 127 (196)
Q Consensus 126 ~K 127 (196)
.|
T Consensus 85 PK 86 (86)
T cd06497 85 PK 86 (86)
T ss_pred cC
Confidence 76
No 33
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.87 E-value=0.0061 Score=43.16 Aligned_cols=68 Identities=12% Similarity=0.209 Sum_probs=55.0
Q ss_pred CEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCC--------ceeEeeccccccCccCCCceEEEcC-CEEEEEEEe
Q 029247 59 EKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQG--------KNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIMLFK 127 (196)
Q Consensus 59 ~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~~--------~~y~l~~~~L~~~I~pe~S~~kv~~-~kIeI~L~K 127 (196)
+.+.|.+.++|+.++++.|.+.++.|.|+...... ..|.-.+ .|-..|+++..+-++.. +-++|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~-~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRY-QLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEE-ECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 57899999999999999999999999998843111 2454444 78899999988888887 899998865
No 34
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=96.81 E-value=0.0088 Score=42.70 Aligned_cols=72 Identities=7% Similarity=0.175 Sum_probs=57.7
Q ss_pred EecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEe--CCC---ceeEeeccccccCccCCCceEEE-cCCEEEEEEEe
Q 029247 55 DQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD--VQG---KNYRFTSPRLNQEIVPEKSKVLV-KPTRVVIMLFK 127 (196)
Q Consensus 55 ~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~--~~~---~~y~l~~~~L~~~I~pe~S~~kv-~~~kIeI~L~K 127 (196)
..+++.+.|.+.++|+.++++.|.+.++.|+|+... ..+ ..|.-.+ .|-..|+++.-+-++ ..+.+.|++.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~-~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKC-QLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEE-ECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 457889999999999999999999999999998732 111 2344444 788999999888887 78899998864
No 35
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.77 E-value=0.0095 Score=42.67 Aligned_cols=72 Identities=4% Similarity=0.103 Sum_probs=57.2
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CCc-----eeEeeccccccCccCCCceEEEc-CCEEEEEEE
Q 029247 56 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK-----NYRFTSPRLNQEIVPEKSKVLVK-PTRVVIMLF 126 (196)
Q Consensus 56 Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~---~~~-----~y~l~~~~L~~~I~pe~S~~kv~-~~kIeI~L~ 126 (196)
-+++...|.+.++|+.++++.|.+.++.|.|+.... .+. +|.-.+ .|-..|+++.-+-++. ++-+.|+|.
T Consensus 4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~-~LP~~vd~~~i~A~~~~dGvL~I~lP 82 (84)
T cd06498 4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKY-RIPADVDPLTITSSLSPDGVLTVCGP 82 (84)
T ss_pred eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEE-ECCCCCChHHcEEEeCCCCEEEEEEe
Confidence 357788999999999999999999999999988431 111 133333 7888999999999995 899999998
Q ss_pred eC
Q 029247 127 KA 128 (196)
Q Consensus 127 K~ 128 (196)
|+
T Consensus 83 k~ 84 (84)
T cd06498 83 RK 84 (84)
T ss_pred CC
Confidence 74
No 36
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.75 E-value=0.02 Score=44.81 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=59.8
Q ss_pred CceEEEe-cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CCc----------eeEeeccccccCccCCCceEE
Q 029247 50 GSFSWDQ-DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK----------NYRFTSPRLNQEIVPEKSKVL 115 (196)
Q Consensus 50 ~ry~W~Q-t~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~---~~~----------~y~l~~~~L~~~I~pe~S~~k 115 (196)
+.++-++ +++.+.|.+.++|+.++++.|.++++.|.|+.... .+. .|.-.+ .|-..|++++ -+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~-~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKF-QLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEE-ECCCCcccCc--CE
Confidence 4578884 89999999999999999999999999999987421 111 233333 7888898873 67
Q ss_pred EcCCEEEEEEEeC
Q 029247 116 VKPTRVVIMLFKA 128 (196)
Q Consensus 116 v~~~kIeI~L~K~ 128 (196)
...|-+.|+|.|.
T Consensus 112 ~~dGVL~I~lPK~ 124 (137)
T PRK10743 112 LVNGLLYIDLERV 124 (137)
T ss_pred EeCCEEEEEEeCC
Confidence 8889999999996
No 37
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.72 E-value=0.02 Score=41.25 Aligned_cols=73 Identities=12% Similarity=0.239 Sum_probs=54.2
Q ss_pred eEEEecC-CEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCC----C----------ceeEeeccccccCccCCCceEEE
Q 029247 52 FSWDQDN-EKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ----G----------KNYRFTSPRLNQEIVPEKSKVLV 116 (196)
Q Consensus 52 y~W~Qt~-~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~----~----------~~y~l~~~~L~~~I~pe~S~~kv 116 (196)
++=++++ +...|.+.+||+.++++.|.+..+.|.|+..... + ..|.-.+ .|-..|+.+ +...
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~-~LP~~vd~~--~A~~ 79 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSF-NLADHVKVK--GAEL 79 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEE-ECCCCceEC--eeEE
Confidence 4556664 8999999999999999999999999999863210 1 1244333 677778765 6678
Q ss_pred cCCEEEEEEEe
Q 029247 117 KPTRVVIMLFK 127 (196)
Q Consensus 117 ~~~kIeI~L~K 127 (196)
..+.+.|+|.+
T Consensus 80 ~~GvL~I~l~~ 90 (90)
T cd06470 80 ENGLLTIDLER 90 (90)
T ss_pred eCCEEEEEEEC
Confidence 88999998863
No 38
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.61 E-value=0.013 Score=41.77 Aligned_cols=71 Identities=7% Similarity=0.108 Sum_probs=55.6
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CC-----ceeEeeccccccCccCCCceEEE-cCCEEEEEEE
Q 029247 56 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QG-----KNYRFTSPRLNQEIVPEKSKVLV-KPTRVVIMLF 126 (196)
Q Consensus 56 Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~---~~-----~~y~l~~~~L~~~I~pe~S~~kv-~~~kIeI~L~ 126 (196)
.+++.+.|.+.++|+.++++.|.+.++.|.|+.... .+ .+|.-.+ .|-..|+++..+-.+ .+|-+.|++.
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~-~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRY-RLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEE-ECCCCcChHHeEEEECCCCEEEEEec
Confidence 467889999999999999999999999999988431 11 1243333 788889998888888 4888999886
Q ss_pred e
Q 029247 127 K 127 (196)
Q Consensus 127 K 127 (196)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 5
No 39
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=96.26 E-value=0.054 Score=42.72 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=57.7
Q ss_pred ceEEEe-cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CCc----------eeEeeccccccCccCCCceEEE
Q 029247 51 SFSWDQ-DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK----------NYRFTSPRLNQEIVPEKSKVLV 116 (196)
Q Consensus 51 ry~W~Q-t~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~---~~~----------~y~l~~~~L~~~I~pe~S~~kv 116 (196)
.++=++ +++.+.|.+.++|++++++.|.++++.|+|+.... .+. .|.-.+ .|-..|+++ .-+.
T Consensus 34 ~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f-~LP~~vd~~--~A~~ 110 (142)
T PRK11597 34 PYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSF-TLAENMEVS--GATF 110 (142)
T ss_pred cEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEE-ECCCCcccC--cCEE
Confidence 356676 46789999999999999999999999999988421 112 233333 677888887 4678
Q ss_pred cCCEEEEEEEeC
Q 029247 117 KPTRVVIMLFKA 128 (196)
Q Consensus 117 ~~~kIeI~L~K~ 128 (196)
..|-+.|+|.|.
T Consensus 111 ~nGVL~I~lPK~ 122 (142)
T PRK11597 111 VNGLLHIDLIRN 122 (142)
T ss_pred cCCEEEEEEecc
Confidence 899999999986
No 40
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=96.11 E-value=0.043 Score=39.23 Aligned_cols=70 Identities=10% Similarity=0.174 Sum_probs=54.3
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CC-----ceeEeeccccccCccCCCceEEEc-CCEEEEEEEe
Q 029247 57 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QG-----KNYRFTSPRLNQEIVPEKSKVLVK-PTRVVIMLFK 127 (196)
Q Consensus 57 t~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~---~~-----~~y~l~~~~L~~~I~pe~S~~kv~-~~kIeI~L~K 127 (196)
.++...|.+.++|+.++++.|++.++.|.|+.... .+ .+|.-.+ .|-..|+++.-+-+.. ++.+.|+|.|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~-~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTY-ILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEE-ECCCCCChhhEEEEecCCCEEEEEecC
Confidence 45678889999999999999999999999987431 11 1233333 7888999998888896 8899998864
No 41
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=95.70 E-value=0.16 Score=44.27 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=54.5
Q ss_pred CCEEEEEEEeCCC-CCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcC--CEEEEEEE
Q 029247 58 NEKVKIYISLEGV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKP--TRVVIMLF 126 (196)
Q Consensus 58 ~~~V~I~I~lk~v-~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~--~kIeI~L~ 126 (196)
.+.+.|.|.++++ +..++.++++++.|.|.+.. ..|.|.+ .|-.+|+++.++-+... ..|.|+|.
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~---~~y~L~l-~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPK---PKYRLDL-PLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCC---CceEEEc-cCCCcccCCCceEEEccCCCEEEEEEE
Confidence 6889999999998 88999999999999998843 2688877 99999999988776654 57888873
No 42
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=95.52 E-value=0.08 Score=38.04 Aligned_cols=68 Identities=10% Similarity=0.168 Sum_probs=51.3
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC-----CCc-------eeEeeccccccCccCCCceEEE-cCCEEEE
Q 029247 57 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-----QGK-------NYRFTSPRLNQEIVPEKSKVLV-KPTRVVI 123 (196)
Q Consensus 57 t~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~-----~~~-------~y~l~~~~L~~~I~pe~S~~kv-~~~kIeI 123 (196)
..+.+.|.+.++|+.+++|.|.+..+.|.|+.... ++. .|.-.+ .|-..|+++..+-.+ ..+-+.|
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~-~LP~~Vd~~~i~A~~~~dGvL~I 83 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREA-QLPEHVDPEAVTCSLSPSGHLHI 83 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEE-ECCCCcChHHeEEEeCCCceEEE
Confidence 45688999999999999999999999999988421 111 233333 677889988888888 6777777
Q ss_pred EE
Q 029247 124 ML 125 (196)
Q Consensus 124 ~L 125 (196)
.+
T Consensus 84 ~~ 85 (87)
T cd06481 84 RA 85 (87)
T ss_pred Ec
Confidence 65
No 43
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=94.06 E-value=0.49 Score=33.82 Aligned_cols=68 Identities=6% Similarity=0.062 Sum_probs=49.8
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CCc-----eeEeeccccccCccCCCceEEE-cCCEEEEE
Q 029247 56 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK-----NYRFTSPRLNQEIVPEKSKVLV-KPTRVVIM 124 (196)
Q Consensus 56 Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~---~~~-----~y~l~~~~L~~~I~pe~S~~kv-~~~kIeI~ 124 (196)
.+.+...|.+.++|+.+++|.|.+..+.|.|+.... ... .|.-.+ .|-..|+++..+-+. ..+-|.|.
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~-~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQY-QLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEE-ECCCCcchheEEEEEcCCCEEEEE
Confidence 356788899999999999999999999999998421 111 222223 677888888777776 56666654
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=93.66 E-value=0.42 Score=34.49 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=48.6
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCC-----C-cee-----EeeccccccCccCCCceEEEcCC-EEEE
Q 029247 57 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ-----G-KNY-----RFTSPRLNQEIVPEKSKVLVKPT-RVVI 123 (196)
Q Consensus 57 t~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~-----~-~~y-----~l~~~~L~~~I~pe~S~~kv~~~-kIeI 123 (196)
.++.+.|++.+||+.+++|.|.+..+.|+|+..... + ..| .-.+ .|-..|+++.-+-+...+ .|+|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f-~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEF-SLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEE-ECCCCcChHHcEEEEcCCCEEEE
Confidence 457889999999999999999999999999984211 1 122 2222 677888888877777766 5655
No 45
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=92.17 E-value=1.3 Score=36.18 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=50.8
Q ss_pred EecCC-EEEEEEEeCCCCCCC-cEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEEEEEEEeCCC
Q 029247 55 DQDNE-KVKIYISLEGVVQDK-MEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASK 130 (196)
Q Consensus 55 ~Qt~~-~V~I~I~lk~v~~~~-v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~ 130 (196)
.+.++ ++.|.-.++||..++ +.|.+..+...|.+.. ++ .|.-.+ .|-.+. ++.-.+++..+-+||.|.+.++
T Consensus 97 re~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~-~~-~~~krv-~L~~~~-~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 97 RERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV-GE-KYLKRV-ALPWPD-PEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred EecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec-CC-ceEeeE-ecCCCc-cceeeEEEeCceEEEEEeecCC
Confidence 34455 788999999998777 8888886666666542 22 233223 566663 6666888899999999999765
No 46
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=89.95 E-value=2.9 Score=30.47 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=49.7
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCC-----C---ceeEeeccccccCccCCCceEEEc-CCEEEEEE
Q 029247 57 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ-----G---KNYRFTSPRLNQEIVPEKSKVLVK-PTRVVIML 125 (196)
Q Consensus 57 t~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~-----~---~~y~l~~~~L~~~I~pe~S~~kv~-~~kIeI~L 125 (196)
+.+.-.|.+.+.+..++++.|+..++.|.|+..... | ..|.-.+ .|-..|+++..+-.+. ++.|.|.+
T Consensus 13 ~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~-~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 13 SSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKI-QLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEE-ECCCCCCchhEEEEeCCCCeEEEEc
Confidence 344557888899999999999999999999884321 1 2233333 6888899988887777 66777754
No 47
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=45.53 E-value=32 Score=23.61 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=24.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 029247 155 AGIMDLMKNMYEEGDDEMKRTIAKAWTD 182 (196)
Q Consensus 155 ~~l~~lfkkiY~~~dddtkRam~Ks~~E 182 (196)
-+|--||..+|+++|++.|..|+.+..+
T Consensus 36 PGLGVlFE~~W~~~~~~ek~~m~~~l~~ 63 (65)
T PF14098_consen 36 PGLGVLFEVIWKNSDESEKQEMVNTLEQ 63 (65)
T ss_pred CchHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3677899999999999999999987543
No 48
>PF09829 DUF2057: Uncharacterized protein conserved in bacteria (DUF2057); InterPro: IPR018635 The proteins in this entry are functionally uncharacterised.
Probab=42.66 E-value=20 Score=28.95 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=21.3
Q ss_pred chhHHHHHHHHhcCCCHHHHHHHHH
Q 029247 154 MAGIMDLMKNMYEEGDDEMKRTIAK 178 (196)
Q Consensus 154 ~~~l~~lfkkiY~~~dddtkRam~K 178 (196)
+.....|+|..|..+|+++|++.++
T Consensus 164 ~~~~~~~Lq~wy~qAs~~eRk~F~~ 188 (189)
T PF09829_consen 164 ESEALQMLQYWYLQASKEERKAFLK 188 (189)
T ss_pred cccHHHHHHHHHHhCCHHHHHHHhc
Confidence 3456789999999999999999864
No 49
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=39.44 E-value=41 Score=22.08 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=20.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHH
Q 029247 156 GIMDLMKNMYEEGDDEMKRTIAKAW 180 (196)
Q Consensus 156 ~l~~lfkkiY~~~dddtkRam~Ks~ 180 (196)
.+..+|..+|..+|+++|+.|.+-.
T Consensus 30 ~l~~~~~~~~~~~~~~~~~kv~rll 54 (64)
T PF04818_consen 30 VLPDAFAHAYKNVDPEVRKKVQRLL 54 (64)
T ss_dssp CHHHHHHHHCCCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4778999999999999999988753
No 50
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=39.00 E-value=42 Score=23.03 Aligned_cols=27 Identities=11% Similarity=0.350 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 029247 155 AGIMDLMKNMYEEGDDEMKRTIAKAWT 181 (196)
Q Consensus 155 ~~l~~lfkkiY~~~dddtkRam~Ks~~ 181 (196)
-+|--||..+|..+|+..|.+|+.+..
T Consensus 35 PGLGVlFE~~W~~~~~~ek~~m~~~l~ 61 (65)
T TIGR03092 35 PGLGVLFEAIWKHANEQEKDEMLETLE 61 (65)
T ss_pred CccHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 357789999999999999999998754
No 51
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=37.94 E-value=72 Score=20.76 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=27.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 029247 155 AGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGK 187 (196)
Q Consensus 155 ~~l~~lfkkiY~~~dddtkRam~Ks~~ES~g~~ 187 (196)
..+.++.++=+...++|+|+++.+|..=-+.|.
T Consensus 18 ~~L~~lL~~~~~~L~p~lR~~lv~aLiLLRnK~ 50 (52)
T PF08158_consen 18 QELIDLLRNHHTVLDPDLRMKLVKALILLRNKD 50 (52)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHHccC
Confidence 457888899999999999999999987655543
No 52
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=37.14 E-value=2.2e+02 Score=22.97 Aligned_cols=72 Identities=11% Similarity=0.226 Sum_probs=51.8
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCC-----C---ceeEeeccccccCccCCCceEEEcC-CEEEEEEEe
Q 029247 57 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ-----G---KNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIMLFK 127 (196)
Q Consensus 57 t~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~-----~---~~y~l~~~~L~~~I~pe~S~~kv~~-~kIeI~L~K 127 (196)
+.+...|.+.+....++.+.|+..++.|.|...... | ++|.=.+ .|-..++|+.-+-.+.. |.|.|.-.|
T Consensus 70 ~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y-~LP~~vdp~~V~S~LS~dGvLtI~ap~ 148 (173)
T KOG3591|consen 70 DKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKY-LLPEDVDPTSVTSTLSSDGVLTIEAPK 148 (173)
T ss_pred CCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEe-cCCCCCChhheEEeeCCCceEEEEccC
Confidence 345566777788888999999999999999885321 1 2343333 78899999987777765 577777776
Q ss_pred CC
Q 029247 128 AS 129 (196)
Q Consensus 128 ~~ 129 (196)
..
T Consensus 149 ~~ 150 (173)
T KOG3591|consen 149 PP 150 (173)
T ss_pred CC
Confidence 54
No 53
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=35.63 E-value=59 Score=23.29 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=23.1
Q ss_pred CCCCchhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 029247 150 ERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTD 182 (196)
Q Consensus 150 ~~d~~~~l~~lfkkiY~~~dddtkRam~Ks~~E 182 (196)
..||...=..+++.|.+-||+|-|++++-.++.
T Consensus 45 ~vdP~N~EerlLkELW~va~e~Eq~~LA~lmvK 77 (81)
T PF11588_consen 45 NVDPKNPEERLLKELWDVADEEEQHALANLMVK 77 (81)
T ss_dssp -----SHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346766677899999999999999999988764
No 54
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=34.70 E-value=41 Score=23.29 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=23.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 029247 155 AGIMDLMKNMYEEGDDEMKRTIAKAWT 181 (196)
Q Consensus 155 ~~l~~lfkkiY~~~dddtkRam~Ks~~ 181 (196)
-+|--||..+|..+|+..|..|+....
T Consensus 38 PGLGVlFE~~W~~~~~~ek~~m~~~l~ 64 (68)
T PRK02955 38 PGLGVLFEVIWKNADENEKDEMLETLE 64 (68)
T ss_pred CcchhHHHHHHHhcCHHHHHHHHHHHH
Confidence 357789999999999999999998754
No 55
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.41 E-value=2e+02 Score=26.46 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=38.6
Q ss_pred EEEEEeCCCCCCCcEEEEEeeEEEEEEE--eCCCceeEeeccccccCccCCCceEEEcCCEEEEEEEeCCCC
Q 029247 62 KIYISLEGVVQDKMEAEFKQWSFDVKFH--DVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKG 131 (196)
Q Consensus 62 ~I~I~lk~v~~~~v~V~f~~~sl~v~i~--~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~ 131 (196)
+|+|+++|...-.+..++.+. +.|.+. .+.-..|.. +|-.+..|+.-++.+.+.++.+++.|+...
T Consensus 71 tV~Vtl~G~ns~~~~~~~~~d-FkV~ADLt~a~~Gt~ev---kl~ve~l~~~ltvsV~P~~~~Vti~kk~tk 138 (403)
T COG4856 71 TVTVTLKGPNSIVLKSEKPED-FKVVADLTHAGVGTHEV---KLQVEGLPDGLTVSVNPEKATVTIEKKVTK 138 (403)
T ss_pred EEEEEEeCCcceeeeeecCcC-eEEEEEhhhcCCCceEe---eeEeecCCCCceEEEccceeEEEEeeeeEE
Confidence 444555554333344444433 555442 122223443 566777788888889988888888887643
No 56
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=30.60 E-value=64 Score=25.98 Aligned_cols=29 Identities=17% Similarity=0.452 Sum_probs=24.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 029247 155 AGIMDLMKNMYEEGDDEMKRTIAKAWTDA 183 (196)
Q Consensus 155 ~~l~~lfkkiY~~~dddtkRam~Ks~~ES 183 (196)
.....++.-|+..|||+.||.|.+.+..-
T Consensus 120 ~naiaLinAL~~kA~~~~r~~i~~~l~~k 148 (160)
T PF11841_consen 120 TNAIALINALFLKADDSKRKEIAETLSQK 148 (160)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34568889999999999999999988653
No 57
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=24.93 E-value=59 Score=21.13 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=20.0
Q ss_pred HhcCCCHHHHHHHHHHHHHhCCCCCCC
Q 029247 164 MYEEGDDEMKRTIAKAWTDARSGKTAD 190 (196)
Q Consensus 164 iY~~~dddtkRam~Ks~~ES~g~~~~~ 190 (196)
|....++|+||++++..+++--...+-
T Consensus 8 ~~~Grs~EqK~~L~~~it~a~~~~~~~ 34 (60)
T PRK02289 8 LFEGRSQEQKNALAREVTEVVSRIAKA 34 (60)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 345669999999999988875555443
No 58
>PF12100 DUF3576: Domain of unknown function (DUF3576); InterPro: IPR021959 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 100 amino acids in length. This domain has a single completely conserved residue G that may be functionally important.
Probab=24.75 E-value=1.5e+02 Score=22.13 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=22.0
Q ss_pred ceecccCceEEEec----CCEEEEEEEeC--CCCCCCcEEEE
Q 029247 44 LNYITLGSFSWDQD----NEKVKIYISLE--GVVQDKMEAEF 79 (196)
Q Consensus 44 ~~~~~i~ry~W~Qt----~~~V~I~I~lk--~v~~~~v~V~f 79 (196)
-.+.++.-.+||++ ++...++|++. .+..+.+.|.+
T Consensus 25 D~~gGVI~TdWY~~p~~~~er~k~tv~Ild~~Lradal~V~v 66 (103)
T PF12100_consen 25 DPFGGVIVTDWYSPPPGPNERFKATVYILDRALRADALRVSV 66 (103)
T ss_pred CCCCCEEEeccccCCCCCCeeEEEEEEEECccccCCceEEEE
Confidence 34455556699997 44666777764 34555555554
No 59
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.41 E-value=42 Score=31.19 Aligned_cols=82 Identities=16% Similarity=0.075 Sum_probs=55.6
Q ss_pred CceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCC---ceEEEcCCEEEEEEE
Q 029247 50 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEK---SKVLVKPTRVVIMLF 126 (196)
Q Consensus 50 ~ry~W~Qt~~~V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~---S~~kv~~~kIeI~L~ 126 (196)
++|.-.|.++.+++.|+.+-.....+.+...++.+.+++. +|-+.+ .+-+.+..+. .+|-.+++.+.|.+.
T Consensus 4 p~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~-----pyflrl-~~p~~~~~d~~~n~s~d~kd~~~~vK~~ 77 (466)
T KOG3247|consen 4 PQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAG-----PYFLRL-AGPGMVEDDARPNASYDAKDGYAHVKVP 77 (466)
T ss_pred ceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccc-----hhHHhh-cCcchhhhhccccCccccccceeEEeec
Confidence 5678899999999999998555556666666666666652 343333 4555554433 255667789999999
Q ss_pred eCCCC-Cccccc
Q 029247 127 KASKG-NWLDLQ 137 (196)
Q Consensus 127 K~~~~-~W~~L~ 137 (196)
|..++ +.+.|.
T Consensus 78 K~~~~e~F~~Ld 89 (466)
T KOG3247|consen 78 KFHPGEHFSDLD 89 (466)
T ss_pred CCCccccccchh
Confidence 97765 666654
No 60
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=24.41 E-value=74 Score=20.32 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=19.2
Q ss_pred HhcCCCHHHHHHHHHHHHHhCCCCCC
Q 029247 164 MYEEGDDEMKRTIAKAWTDARSGKTA 189 (196)
Q Consensus 164 iY~~~dddtkRam~Ks~~ES~g~~~~ 189 (196)
|+...++++||++.+...++--...+
T Consensus 8 ~~~Grs~eqk~~l~~~it~~l~~~~~ 33 (61)
T PRK02220 8 LIEGRTEEQLKALVKDVTAAVSKNTG 33 (61)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34567999999999998886544443
No 61
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=22.53 E-value=71 Score=16.20 Aligned_cols=15 Identities=20% Similarity=0.590 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHh
Q 029247 169 DDEMKRTIAKAWTDA 183 (196)
Q Consensus 169 dddtkRam~Ks~~ES 183 (196)
|++-+||+.=|..|+
T Consensus 4 d~~L~~Al~~S~~e~ 18 (18)
T PF02809_consen 4 DEDLQRALEMSLEEA 18 (18)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhccC
Confidence 578899999988774
No 62
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=22.10 E-value=64 Score=20.64 Aligned_cols=20 Identities=45% Similarity=0.466 Sum_probs=15.0
Q ss_pred HhcCCCHHHHHHHHHHHHHh
Q 029247 164 MYEEGDDEMKRTIAKAWTDA 183 (196)
Q Consensus 164 iY~~~dddtkRam~Ks~~ES 183 (196)
++...|+++|+++++..++.
T Consensus 7 ~~~g~~~e~K~~l~~~it~~ 26 (60)
T PF01361_consen 7 IPEGRTAEQKRELAEAITDA 26 (60)
T ss_dssp EESTS-HHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHH
Confidence 45666899999999987764
No 63
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=21.44 E-value=3e+02 Score=19.26 Aligned_cols=56 Identities=13% Similarity=0.353 Sum_probs=29.8
Q ss_pred EEEEEEeCCCCCCCcEEEEEee-EEEEEEEeCCC-ceeEeeccccccCccCCCceEEEcCC
Q 029247 61 VKIYISLEGVVQDKMEAEFKQW-SFDVKFHDVQG-KNYRFTSPRLNQEIVPEKSKVLVKPT 119 (196)
Q Consensus 61 V~I~I~lk~v~~~~v~V~f~~~-sl~v~i~~~~~-~~y~l~~~~L~~~I~pe~S~~kv~~~ 119 (196)
|.+.+.+.|...+.+.+.|... ...|.+.+.+| .-|.+.-+..|-.+. ....+.++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal---~~~~l~pG 59 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQAL---QEETLEPG 59 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT----------EEEEE-TT
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhhee---eEEEECCC
Confidence 5677777787778899998664 68888875444 446776667776654 34455555
No 64
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=20.92 E-value=79 Score=20.29 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=18.6
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCC
Q 029247 166 EEGDDEMKRTIAKAWTDARSGKTA 189 (196)
Q Consensus 166 ~~~dddtkRam~Ks~~ES~g~~~~ 189 (196)
...++|+|+++.+..+++=-..++
T Consensus 10 ~grt~eqK~~l~~~it~~l~~~lg 33 (63)
T TIGR00013 10 EGRTDEQKRQLIEGVTEAMAETLG 33 (63)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhC
Confidence 456899999999998886555554
No 65
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=20.50 E-value=2.8e+02 Score=22.14 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=31.4
Q ss_pred EEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEeeccccccCccCCCceEEEcCCEE--EEEEEe
Q 029247 61 VKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRV--VIMLFK 127 (196)
Q Consensus 61 V~I~I~lk~v~~~~v~V~f~~~sl~v~i~~~~~~~y~l~~~~L~~~I~pe~S~~kv~~~kI--eI~L~K 127 (196)
-++++|+|+. .+..+-|+++++.|-+.+ ++.-. .--.-+.++.+.|++.++.| |+++--
T Consensus 70 ~t~t~yiKNt--G~~~~~fd~~sitVliDG----~iv~~--a~~~~~~~~gs~i~l~PG~Vg~ev~vn~ 130 (154)
T COG3354 70 YTYTFYIKNT--GSDSIAFDNTSITVLIDG----NIVTP--AYVTFTSVNGSSIRLSPGQVGREVTVNE 130 (154)
T ss_pred eEEEEEEecC--CCcccccCCCeEEEEEcC----cEecc--ceEEEEecCCCeeEecCCceeeEEEecc
Confidence 3566778865 344567788888877743 11110 01122245567777666533 455443
No 66
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=20.44 E-value=83 Score=19.71 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=18.3
Q ss_pred hcCCCHHHHHHHHHHHHHhCCCCCC
Q 029247 165 YEEGDDEMKRTIAKAWTDARSGKTA 189 (196)
Q Consensus 165 Y~~~dddtkRam~Ks~~ES~g~~~~ 189 (196)
....+.|+||++.+...++-...++
T Consensus 8 ~~grt~eqk~~l~~~i~~~l~~~~g 32 (58)
T cd00491 8 LEGRTDEQKRELIERVTEAVSEILG 32 (58)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3456899999999998876544443
Done!