Query 029248
Match_columns 196
No_of_seqs 179 out of 783
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:53:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01159 DRP1 density-regulat 100.0 2.8E-60 6E-65 391.4 11.8 172 7-187 1-173 (173)
2 KOG3239 Density-regulated prot 100.0 1.4E-58 2.9E-63 378.4 10.5 179 1-191 1-191 (193)
3 PF01253 SUI1: Translation ini 99.9 5.8E-26 1.3E-30 166.5 9.7 82 99-181 1-82 (83)
4 COG0023 SUI1 Translation initi 99.9 5.4E-24 1.2E-28 162.7 8.9 83 97-186 21-103 (104)
5 cd00474 SUI1_eIF1 The SUI1/eIF 99.9 4.5E-23 9.8E-28 150.1 8.2 76 104-186 1-76 (77)
6 TIGR01160 SUI1_MOF2 translatio 99.9 9.6E-23 2.1E-27 157.4 8.7 84 101-186 24-107 (110)
7 PRK00939 translation initiatio 99.9 1.2E-22 2.6E-27 154.3 8.3 77 102-185 23-99 (99)
8 TIGR01158 SUI1_rel translation 99.8 2E-20 4.4E-25 142.5 8.9 77 101-184 22-99 (101)
9 KOG2522 Filamentous baseplate 99.8 6.2E-20 1.3E-24 168.9 6.1 98 97-195 461-559 (560)
10 KOG1770 Translation initiation 99.8 3.8E-19 8.1E-24 135.6 8.9 84 101-186 26-109 (112)
11 PRK06824 translation initiatio 99.7 4.2E-18 9E-23 133.1 7.5 69 102-175 40-109 (118)
12 PRK07451 translation initiatio 99.7 6.4E-18 1.4E-22 131.5 7.5 70 101-175 36-106 (115)
13 PRK09019 translation initiatio 99.7 1.1E-17 2.4E-22 128.9 7.1 70 101-175 29-99 (108)
14 PF05046 Img2: Mitochondrial l 97.5 0.00044 9.5E-09 51.3 7.3 65 105-175 14-85 (87)
15 PRK03988 translation initiatio 93.8 0.15 3.3E-06 41.0 5.3 66 101-176 29-98 (138)
16 TIGR00311 aIF-2beta translatio 93.7 0.16 3.5E-06 40.6 5.4 66 101-176 24-93 (133)
17 smart00653 eIF2B_5 domain pres 93.3 0.23 5.1E-06 38.4 5.6 67 102-176 6-76 (110)
18 PRK14434 acylphosphatase; Prov 92.1 0.63 1.4E-05 34.7 6.3 69 119-188 6-76 (92)
19 PRK14451 acylphosphatase; Prov 91.6 0.86 1.9E-05 33.7 6.5 67 120-188 8-74 (89)
20 PRK14449 acylphosphatase; Prov 91.5 0.93 2E-05 33.5 6.6 68 119-188 7-74 (90)
21 PRK14444 acylphosphatase; Prov 91.4 1.1 2.3E-05 33.4 6.8 67 119-187 8-74 (92)
22 PRK14437 acylphosphatase; Prov 90.8 1 2.2E-05 34.8 6.4 67 119-187 27-93 (109)
23 PRK12336 translation initiatio 90.7 0.59 1.3E-05 39.6 5.6 65 102-176 26-94 (201)
24 PRK14425 acylphosphatase; Prov 90.6 0.93 2E-05 33.9 5.9 68 119-188 10-77 (94)
25 PRK14436 acylphosphatase; Prov 90.4 1.4 3E-05 32.8 6.6 67 120-188 9-75 (91)
26 KOG4034 Uncharacterized conser 90.0 0.91 2E-05 37.6 5.8 70 103-176 96-168 (169)
27 PF01873 eIF-5_eIF-2B: Domain 89.9 0.33 7.2E-06 38.4 3.2 69 100-176 17-89 (125)
28 PRK14422 acylphosphatase; Prov 89.7 1.8 3.8E-05 32.3 6.8 68 119-188 10-77 (93)
29 PRK14443 acylphosphatase; Prov 89.6 1.3 2.9E-05 33.2 6.0 67 119-187 8-75 (93)
30 PRK14438 acylphosphatase; Prov 89.5 1.4 3E-05 32.7 6.0 68 119-188 7-74 (91)
31 PRK14446 acylphosphatase; Prov 89.5 1.2 2.5E-05 33.1 5.6 67 119-187 6-72 (88)
32 PRK14440 acylphosphatase; Prov 89.3 1.9 4E-05 32.0 6.6 67 119-187 7-73 (90)
33 PRK14452 acylphosphatase; Prov 89.3 2.1 4.6E-05 32.9 7.2 68 118-187 23-90 (107)
34 PRK14445 acylphosphatase; Prov 89.2 1.4 3.1E-05 32.5 6.0 68 119-188 8-75 (91)
35 PRK14442 acylphosphatase; Prov 89.2 1.8 3.8E-05 32.1 6.4 67 119-187 8-74 (91)
36 PRK14429 acylphosphatase; Prov 89.1 1.5 3.3E-05 32.4 5.9 68 119-188 6-73 (90)
37 PRK14433 acylphosphatase; Prov 88.9 1.9 4.1E-05 31.8 6.3 67 119-187 5-71 (87)
38 PRK14428 acylphosphatase; Prov 88.8 2 4.3E-05 32.5 6.6 67 119-187 12-78 (97)
39 PRK14435 acylphosphatase; Prov 88.7 1.9 4.1E-05 31.9 6.3 67 119-187 6-72 (90)
40 PRK14427 acylphosphatase; Prov 88.7 1.7 3.8E-05 32.4 6.1 68 119-188 10-77 (94)
41 PRK14420 acylphosphatase; Prov 88.6 2 4.4E-05 31.6 6.4 68 119-188 6-73 (91)
42 PRK14423 acylphosphatase; Prov 87.9 1.9 4.2E-05 31.9 5.9 67 120-188 10-76 (92)
43 PRK14426 acylphosphatase; Prov 87.8 2.6 5.6E-05 31.3 6.5 67 119-187 8-75 (92)
44 PRK14450 acylphosphatase; Prov 87.5 3.2 7E-05 30.6 6.9 66 119-188 6-74 (91)
45 PRK14447 acylphosphatase; Prov 87.5 2.5 5.3E-05 31.6 6.3 68 119-188 8-76 (95)
46 PRK14421 acylphosphatase; Prov 86.8 2.8 6E-05 31.8 6.3 67 119-187 8-74 (99)
47 PF00708 Acylphosphatase: Acyl 86.3 2.3 4.9E-05 31.0 5.5 68 119-188 8-75 (91)
48 PRK14432 acylphosphatase; Prov 85.6 3.8 8.2E-05 30.6 6.4 68 119-188 6-74 (93)
49 PRK14448 acylphosphatase; Prov 85.6 4.4 9.5E-05 29.9 6.7 67 119-187 6-72 (90)
50 PRK14439 acylphosphatase; Prov 85.5 3.4 7.3E-05 34.3 6.6 69 118-188 78-147 (163)
51 TIGR02174 CXXU_selWTH selT/sel 85.0 0.81 1.7E-05 32.4 2.4 29 8-43 1-29 (72)
52 PRK14441 acylphosphatase; Prov 84.7 4.1 8.9E-05 30.3 6.2 68 119-188 9-76 (93)
53 PRK14424 acylphosphatase; Prov 82.0 7.6 0.00017 29.1 6.8 57 118-176 10-66 (94)
54 PRK14430 acylphosphatase; Prov 79.5 8.3 0.00018 28.6 6.2 67 119-187 8-74 (92)
55 PRK14431 acylphosphatase; Prov 79.1 8 0.00017 28.6 6.0 66 119-187 6-72 (89)
56 PF10262 Rdx: Rdx family; Int 76.6 2.4 5.3E-05 30.0 2.5 30 8-44 3-32 (76)
57 COG1254 AcyP Acylphosphatases 68.5 29 0.00063 26.0 6.8 67 119-187 8-74 (92)
58 COG1601 GCD7 Translation initi 48.4 27 0.00059 28.6 3.9 54 118-175 43-100 (151)
59 PF14803 Nudix_N_2: Nudix N-te 44.1 9.3 0.0002 23.6 0.4 12 11-22 1-12 (34)
60 PF10691 DUF2497: Protein of u 43.0 11 0.00023 27.3 0.6 18 32-49 47-64 (73)
61 cd00367 PTS-HPr_like Histidine 36.0 1.4E+02 0.003 20.7 5.5 40 127-174 36-75 (77)
62 PF04739 AMPKBI: 5'-AMP-activa 35.3 56 0.0012 24.9 3.6 22 100-121 74-95 (100)
63 PRK05412 putative nucleotide-b 33.4 87 0.0019 26.0 4.6 63 115-184 91-157 (161)
64 cd01057 AAMH_A Aromatic and Al 33.1 25 0.00055 33.6 1.7 33 12-45 382-430 (465)
65 PTZ00450 macrophage migration 31.7 47 0.001 25.5 2.7 24 163-187 76-99 (113)
66 COG1872 Uncharacterized conser 31.1 51 0.0011 25.4 2.7 29 158-187 45-73 (102)
67 PF06220 zf-U1: U1 zinc finger 30.0 9.6 0.00021 24.0 -1.2 17 18-40 1-17 (38)
68 PF11376 DUF3179: Protein of u 28.3 30 0.00064 30.7 1.2 17 6-22 58-74 (266)
69 PF02594 DUF167: Uncharacteris 28.0 79 0.0017 22.7 3.2 27 161-188 38-64 (77)
70 KOG0023 Alcohol dehydrogenase, 27.6 29 0.00062 32.2 1.0 23 131-153 193-215 (360)
71 COG2126 RPL37A Ribosomal prote 27.0 29 0.00064 24.3 0.7 14 6-19 27-40 (61)
72 COG3058 FdhE Uncharacterized p 27.0 28 0.00061 31.6 0.8 13 9-21 184-196 (308)
73 PRK10897 phosphohistidinoprote 26.0 2.7E+02 0.0058 20.4 5.8 40 129-176 44-83 (90)
74 PF09297 zf-NADH-PPase: NADH p 25.8 28 0.00062 20.6 0.4 14 11-24 4-17 (32)
75 COG4282 SMI1 Protein involved 25.8 49 0.0011 28.0 2.0 25 28-52 10-34 (191)
76 PF00381 PTS-HPr: PTS HPr comp 24.3 1.2E+02 0.0027 21.4 3.7 38 130-175 43-80 (84)
77 KOG1493 Anaphase-promoting com 24.2 26 0.00056 25.9 0.0 11 12-22 22-32 (84)
78 PF11388 DotA: Phagosome traff 23.7 47 0.001 25.5 1.4 27 120-148 3-29 (105)
79 PF06677 Auto_anti-p27: Sjogre 23.6 37 0.00079 21.8 0.6 10 11-20 18-27 (41)
80 PF04216 FdhE: Protein involve 23.3 29 0.00063 30.5 0.2 17 11-27 173-189 (290)
81 smart00668 CTLH C-terminal to 22.6 44 0.00096 21.4 0.9 18 26-43 14-31 (58)
82 PF08421 Methyltransf_13: Puta 22.4 42 0.0009 23.0 0.8 14 5-18 35-48 (62)
83 PF12674 Zn_ribbon_2: Putative 22.1 40 0.00087 24.6 0.7 13 12-24 2-14 (81)
84 cd00729 rubredoxin_SM Rubredox 21.9 36 0.00079 20.7 0.4 11 12-22 20-30 (34)
85 PTZ00397 macrophage migration 21.9 87 0.0019 23.5 2.6 23 164-187 77-99 (116)
86 PF10891 DUF2719: Protein of u 21.3 46 0.001 24.6 0.8 14 6-19 18-31 (81)
87 PRK13780 phosphocarrier protei 20.8 2.8E+02 0.0061 20.2 5.0 40 129-176 42-81 (88)
88 PRK05090 hypothetical protein; 20.6 86 0.0019 23.6 2.2 28 160-188 43-70 (95)
89 PRK01310 hypothetical protein; 20.2 87 0.0019 24.0 2.2 28 160-188 49-76 (104)
No 1
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=100.00 E-value=2.8e-60 Score=391.36 Aligned_cols=172 Identities=41% Similarity=0.740 Sum_probs=144.6
Q ss_pred ceeeEeCCCCCCCccccccCCChhhHHHHHHHhCCCchhHHHhhhhhHHHHHHhhhhhhccCCCCCCCCCCCCCCC-cch
Q 029248 7 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLFGLSSGGADGATSGQTS-SSK 85 (196)
Q Consensus 7 p~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~~~p~l~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~kk 85 (196)
|++|+||||||||||||||||++++|++||++||||||++||++. .+.+.+..+++|...+..+.. + .++
T Consensus 1 p~~V~YCgvCs~P~EyCEf~~~~~kCk~WL~~n~p~l~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~k~ 71 (173)
T TIGR01159 1 PLRVLYCGVCSLPPEYCEFSGDLKRCKVWLSENAPDLYAKLYGTD------SPTAEAEAVTIGEAQEEKGEK---DLLGI 71 (173)
T ss_pred CceeEECCCCCCchHHhcCCCCHHHHHHHHHHhChHHHHHHhhcc------cchhccccchhhHHHHhhhhh---hhhHH
Confidence 789999999999999999999999999999999999999999842 222222112333222221111 2 333
Q ss_pred HHHHhhCCCCCCccCCCCcEEEEEEeecCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCch
Q 029248 86 QEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIS 165 (196)
Q Consensus 86 ~~k~~~~~~~~~kk~~~~~I~I~~~~R~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~ 165 (196)
+++..+++.++++|+.+++|+|++++|+|||+||+|+||+.|++||++|||.|+++||||+||+++++++++|+|||||+
T Consensus 72 ~~~~~~~~~~~~kK~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~ 151 (173)
T TIGR01159 72 QKAQEAREGGKKKKKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVM 151 (173)
T ss_pred HhhhhhhhhhhhccCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHH
Confidence 44444566677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCcEEEc
Q 029248 166 YDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 166 ~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
++|.+||.++|++||+++|+++
T Consensus 152 ~~v~e~L~~~~~~v~e~~I~~~ 173 (173)
T TIGR01159 152 DDIEDYIHEKWPEVGDKDIKDL 173 (173)
T ss_pred HHHHHHHHHHcCCCCHHHeeeC
Confidence 9999999999999999999975
No 2
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Probab=100.00 E-value=1.4e-58 Score=378.42 Aligned_cols=179 Identities=45% Similarity=0.799 Sum_probs=143.9
Q ss_pred CCCCCCcee--eEeCCCCCCCccccccCCChhhHHHHHHHhCCCchhHHHhhhhhHHHHHHhhhhhhccCC-CCCCCCCC
Q 029248 1 MAEKPQPVR--VLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLFGLS-SGGADGAT 77 (196)
Q Consensus 1 m~~~~~p~~--V~YC~vCs~P~EYCEfg~~~~kCk~WL~~~~p~l~~~l~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~ 77 (196)
||+.+.|+. |+||||||||+|||||+|++.+|++||..||||||++||.+.+.+ ... ..| ..+.+|++
T Consensus 1 ~a~k~~P~~~~vlYCGvCSlP~EYCEf~~~~~kCk~WL~~n~pdly~kL~~e~~~~------qe~---~~s~~~~a~G~~ 71 (193)
T KOG3239|consen 1 MADKLGPRKGSVLYCGVCSLPPEYCEFSGDLKKCKEWLEENHPDLYAKLYGEDDPK------QEV---EASTAEGADGEA 71 (193)
T ss_pred CCccCCCcccceEEeeccCCCHHHHHccccHHHHHHHHHhcChhHHHhhhcccChh------hhh---cccccccccCCc
Confidence 888888888 999999999999999999999999999999999999999853321 111 111 11222222
Q ss_pred CCCCCcch-------HHHHhhCCCCCCccCCCCcEEEEEEeecCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeee
Q 029248 78 SGQTSSSK-------QEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVK 150 (196)
Q Consensus 78 ~~~~~~kk-------~~k~~~~~~~~~kk~~~~~I~I~~~~R~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k 150 (196)
. +.++ +.+++.+..++.+++.+++|.|.++.|++||+||+|+||+.|+|||+.+||.|+++||||+||++
T Consensus 72 ~---e~k~ek~~gk~~k~~~~~~~~e~~k~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk 148 (193)
T KOG3239|consen 72 D---EKKKEKRGGKGQKKQENRSQREKKKRLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTK 148 (193)
T ss_pred h---hhHHHhccccchhhhhhHHHHHHhccCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccC
Confidence 1 1111 11122233345667889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCCchHHHHHHHhhhCCCCCCCc--EEEccccc
Q 029248 151 GPTEKEQIDVQGDISYDIVEFITDTWPAVPETA--IYFIEDGK 191 (196)
Q Consensus 151 ~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~--I~~~~~~K 191 (196)
++++.+||+||||+.++|.+||.++|++||+++ |+.++++|
T Consensus 149 ~a~kkdEIvIQGDv~dDi~d~I~ekw~ev~ed~~~IED~~~kK 191 (193)
T KOG3239|consen 149 NAEKKDEIVIQGDVKDDIFDFIPEKWPEVPEDDVKIEDLGDKK 191 (193)
T ss_pred CCCccceEEEeccchHHHHHHHHHhcccCCcccceeecchhhh
Confidence 999999999999999999999999999999995 44444443
No 3
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=99.93 E-value=5.8e-26 Score=166.53 Aligned_cols=82 Identities=41% Similarity=0.678 Sum_probs=70.9
Q ss_pred cCCCCcEEEEEEeecCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCC
Q 029248 99 KKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPA 178 (196)
Q Consensus 99 k~~~~~I~I~~~~R~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ 178 (196)
|+..+.|+|++++|+|||+||+|+||+.|++|+++||+.|+++||||+||+++++++++|+||||++++|.+||.++| .
T Consensus 1 k~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~-~ 79 (83)
T PF01253_consen 1 KKEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKG-G 79 (83)
T ss_dssp -S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHC-S
T ss_pred CCCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhC-C
Confidence 467899999999999999999999999999999999999999999999999998668899999999999999999998 7
Q ss_pred CCC
Q 029248 179 VPE 181 (196)
Q Consensus 179 ip~ 181 (196)
+|+
T Consensus 80 ~~k 82 (83)
T PF01253_consen 80 IPK 82 (83)
T ss_dssp SE-
T ss_pred CCC
Confidence 765
No 4
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=5.4e-24 Score=162.68 Aligned_cols=83 Identities=33% Similarity=0.471 Sum_probs=76.9
Q ss_pred CccCCCCcEEEEEEeecCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhC
Q 029248 97 IKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (196)
Q Consensus 97 ~kk~~~~~I~I~~~~R~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~ 176 (196)
..+...+.|+|++++|++||.||+|+||+.|++||++||+.|+++||||||| ++++|+|||||++.|.+||.+
T Consensus 21 ~~k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtv-----k~~~IeiQGdhr~~v~~~L~~-- 93 (104)
T COG0023 21 VAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTV-----KDGEIEIQGDHRDKVKELLIK-- 93 (104)
T ss_pred cccccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCcee-----cCCEEEEeChHHHHHHHHHHH--
Confidence 3345689999999999999999999999999999999999999999999999 666999999999999999999
Q ss_pred CCCCCCcEEE
Q 029248 177 PAVPETAIYF 186 (196)
Q Consensus 177 ~~ip~~~I~~ 186 (196)
.|++.++|.+
T Consensus 94 ~G~k~k~i~~ 103 (104)
T COG0023 94 KGFKVKNIGI 103 (104)
T ss_pred cCCchhhccc
Confidence 4999999875
No 5
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=99.89 E-value=4.5e-23 Score=150.11 Aligned_cols=76 Identities=37% Similarity=0.442 Sum_probs=70.9
Q ss_pred cEEEEEEeecCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCc
Q 029248 104 EVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETA 183 (196)
Q Consensus 104 ~I~I~~~~R~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~ 183 (196)
.|+|++++|++||+||+|+||+.|++|++++|+.|+++|||||||. +++|+|||||++.|.+||.++ |+++++
T Consensus 1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~-----~~~I~lQGD~r~~v~~~L~~~--g~~~~~ 73 (77)
T cd00474 1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVK-----DEVIELQGDQRKKIKEFLIKM--GFAKDN 73 (77)
T ss_pred CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEe-----cCEEEEeCcHHHHHHHHHHHc--CCCHHH
Confidence 3899999999999999999999999999999999999999999994 489999999999999999884 888888
Q ss_pred EEE
Q 029248 184 IYF 186 (196)
Q Consensus 184 I~~ 186 (196)
|.+
T Consensus 74 i~i 76 (77)
T cd00474 74 IKI 76 (77)
T ss_pred eEe
Confidence 864
No 6
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=99.88 E-value=9.6e-23 Score=157.44 Aligned_cols=84 Identities=30% Similarity=0.408 Sum_probs=77.7
Q ss_pred CCCcEEEEEEeecCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCC
Q 029248 101 ERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVP 180 (196)
Q Consensus 101 ~~~~I~I~~~~R~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip 180 (196)
....|+|++.+|+|||+||+|+||+. ++||++|+|.|+++|||||||...++++++|+|||||+++|.+||.++. -++
T Consensus 24 ~~~~I~Iri~qR~grK~VTiI~Gl~~-~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~re~v~~~L~~~g-~~~ 101 (110)
T TIGR01160 24 TSNYIHIRIQQRNGRKTLTTVQGLPK-EYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQG-LLK 101 (110)
T ss_pred ccceEEEEEEEccCCccEEEEeccCC-hHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcHHHHHHHHHHHcC-CCC
Confidence 36689999999999999999999994 9999999999999999999999888888999999999999999999974 578
Q ss_pred CCcEEE
Q 029248 181 ETAIYF 186 (196)
Q Consensus 181 ~~~I~~ 186 (196)
+++|.+
T Consensus 102 ~~~i~v 107 (110)
T TIGR01160 102 KDQIKI 107 (110)
T ss_pred HHHeee
Confidence 888875
No 7
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=99.88 E-value=1.2e-22 Score=154.33 Aligned_cols=77 Identities=30% Similarity=0.443 Sum_probs=72.2
Q ss_pred CCcEEEEEEeecCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCC
Q 029248 102 RQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPE 181 (196)
Q Consensus 102 ~~~I~I~~~~R~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~ 181 (196)
.+.|+|++++|+|||+||+|+||+.|++|++++++.|+++||||||| ++++|+|||||+++|.+||.+ + |+|.
T Consensus 23 ~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsv-----k~~~I~iQGD~r~~v~~~L~~-~-G~~~ 95 (99)
T PRK00939 23 QQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTV-----KDGRIELQGDHRERVKELLIK-M-GFSE 95 (99)
T ss_pred CceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceE-----ECCEEEEeCcHHHHHHHHHHH-c-CCCh
Confidence 47899999999999999999999999999999999999999999999 456899999999999999987 4 9999
Q ss_pred CcEE
Q 029248 182 TAIY 185 (196)
Q Consensus 182 ~~I~ 185 (196)
++|+
T Consensus 96 ~~i~ 99 (99)
T PRK00939 96 ENIE 99 (99)
T ss_pred hhcC
Confidence 9885
No 8
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=99.83 E-value=2e-20 Score=142.53 Aligned_cols=77 Identities=31% Similarity=0.482 Sum_probs=71.4
Q ss_pred CCCcEEEEEEee-cCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCC
Q 029248 101 ERQEVVIEKVVR-NKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV 179 (196)
Q Consensus 101 ~~~~I~I~~~~R-~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~i 179 (196)
..+.|+|++++| +++|.||+|+||+.|++|++++++.|+++||||+|| ++++|+|||||++.|.+||.++ |+
T Consensus 22 ~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtv-----k~~~IeiQGD~~~~v~~~L~~~--G~ 94 (101)
T TIGR01158 22 EDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTV-----KDGVIEIQGDHRDRVKDLLEKK--GF 94 (101)
T ss_pred CCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeE-----eCCEEEEeCcHHHHHHHHHHHc--CC
Confidence 468899999999 799999999999999999999999999999999999 5679999999999999999883 88
Q ss_pred CCCcE
Q 029248 180 PETAI 184 (196)
Q Consensus 180 p~~~I 184 (196)
|.++|
T Consensus 95 ~~k~~ 99 (101)
T TIGR01158 95 KVKLI 99 (101)
T ss_pred Ceeec
Confidence 87765
No 9
>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=6.2e-20 Score=168.88 Aligned_cols=98 Identities=23% Similarity=0.379 Sum_probs=93.6
Q ss_pred CccCCCCcEEEEEEeecCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCC-CCceEEEcCCchHHHHHHHhhh
Q 029248 97 IKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPT-EKEQIDVQGDISYDIVEFITDT 175 (196)
Q Consensus 97 ~kk~~~~~I~I~~~~R~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~-~~~eI~IQGD~~~~v~~~L~~~ 175 (196)
++||..++|.|..+.|.|||.||.|+||+.|+||+..+|..|+++|+||+||...|+ ++-+|+|||+|.+.|.++|.+.
T Consensus 461 vkKgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~ 540 (560)
T KOG2522|consen 461 VKKGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKS 540 (560)
T ss_pred eecCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999999888 4579999999999999999999
Q ss_pred CCCCCCCcEEEccccccCCC
Q 029248 176 WPAVPETAIYFIEDGKKVAA 195 (196)
Q Consensus 176 ~~~ip~~~I~~~~~~Kkkk~ 195 (196)
| |||.++|+++++.+|||+
T Consensus 541 y-gipkK~I~gleka~Kkkk 559 (560)
T KOG2522|consen 541 Y-GIPKKWIDGLEKAKKKKK 559 (560)
T ss_pred h-CCCHHHHhHHHHhhcccC
Confidence 9 999999999999888875
No 10
>KOG1770 consensus Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.8e-19 Score=135.59 Aligned_cols=84 Identities=30% Similarity=0.426 Sum_probs=78.7
Q ss_pred CCCcEEEEEEeecCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCC
Q 029248 101 ERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVP 180 (196)
Q Consensus 101 ~~~~I~I~~~~R~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip 180 (196)
....|||++.+|+|||++|+|+||.. .+|++.+.+.|+|.|||+|+|+++|+-++.|++|||++++|.+||.... .+.
T Consensus 26 ~~~~ihIRIQQRnGrKtlTtVQgi~~-Eyd~kril~~lKKef~CnGtvved~e~gevIQLqGDqR~nv~~fl~~~g-~~k 103 (112)
T KOG1770|consen 26 TEKYIHIRIQQRNGRKTLTTVQGIPM-EYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQGDQRKNVCQFLVQVG-LVK 103 (112)
T ss_pred ccceEEEEEEeeCCceEEEEecCChh-hhhHHHHHHHHHHhccCCCeEecCcccCceEEeccchhhhHHHHHHHhc-ccc
Confidence 34599999999999999999999998 7999999999999999999999999999999999999999999999986 788
Q ss_pred CCcEEE
Q 029248 181 ETAIYF 186 (196)
Q Consensus 181 ~~~I~~ 186 (196)
+++|.+
T Consensus 104 ~~~iki 109 (112)
T KOG1770|consen 104 KDNIKI 109 (112)
T ss_pred ccceee
Confidence 888875
No 11
>PRK06824 translation initiation factor Sui1; Validated
Probab=99.74 E-value=4.2e-18 Score=133.10 Aligned_cols=69 Identities=20% Similarity=0.341 Sum_probs=64.2
Q ss_pred CCcEEEEEEee-cCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhh
Q 029248 102 RQEVVIEKVVR-NKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT 175 (196)
Q Consensus 102 ~~~I~I~~~~R-~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~ 175 (196)
...|+|++++| +++|.||+|+||..++.|+++|+|.|+++|+||+|| ++++|+|||||++.|.+||.++
T Consensus 40 ~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtv-----kd~~IeiQGD~r~~v~~~L~~~ 109 (118)
T PRK06824 40 DGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTL-----KDGVIEIQGDHVELLLAELLKR 109 (118)
T ss_pred CceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceE-----ecCEEEEcCcHHHHHHHHHHHC
Confidence 45899988876 689999999999999999999999999999999999 6689999999999999999885
No 12
>PRK07451 translation initiation factor Sui1; Validated
Probab=99.73 E-value=6.4e-18 Score=131.50 Aligned_cols=70 Identities=23% Similarity=0.407 Sum_probs=61.8
Q ss_pred CCCcEEEEEEe-ecCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhh
Q 029248 101 ERQEVVIEKVV-RNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT 175 (196)
Q Consensus 101 ~~~~I~I~~~~-R~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~ 175 (196)
..+.|.|++++ ++++|.||+|+||..++.|+++|+|.|+++|+||+|| ++++|+|||||+++|.+||.++
T Consensus 36 ~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtv-----kd~~IelQGD~r~~v~~~L~~~ 106 (115)
T PRK07451 36 QQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTV-----KDNTIEIQGDHRQKILEILIKL 106 (115)
T ss_pred cceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceE-----cCCEEEEcCcHHHHHHHHHHHC
Confidence 35667777543 3467999999999999999999999999999999999 7789999999999999999885
No 13
>PRK09019 translation initiation factor Sui1; Validated
Probab=99.72 E-value=1.1e-17 Score=128.90 Aligned_cols=70 Identities=26% Similarity=0.369 Sum_probs=63.0
Q ss_pred CCCcEEEEEEee-cCCeeEEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhh
Q 029248 101 ERQEVVIEKVVR-NKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT 175 (196)
Q Consensus 101 ~~~~I~I~~~~R-~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~ 175 (196)
....|.|+++++ +++|.||+|+||.....|+++|||.|+++||||+|| .+++|+|||||++.|.+||.++
T Consensus 29 ~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtv-----k~~~IelQGD~r~~v~~~L~~~ 99 (108)
T PRK09019 29 GDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAV-----KDGVIEIQGDKRDLLKSLLEAK 99 (108)
T ss_pred cCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeE-----EcCEEEEcCcHHHHHHHHHHHC
Confidence 456888887765 367899999999989999999999999999999999 5689999999999999999885
No 14
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=97.53 E-value=0.00044 Score=51.32 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=50.4
Q ss_pred EEEEEEee-cCCeeEEEEEccCCCCCCHHHHHHHHhhhcccce------eeeeCCCCCceEEEcCCchHHHHHHHhhh
Q 029248 105 VVIEKVVR-NKRKCITIVKGLDLFGVKLSDASKKLGKKFATGA------SVVKGPTEKEQIDVQGDISYDIVEFITDT 175 (196)
Q Consensus 105 I~I~~~~R-~~rK~VT~V~GLe~f~idlk~laK~lkkkfacg~------SV~k~~~~~~eI~IQGD~~~~v~~~L~~~ 175 (196)
+=|....+ +|.+.+|+|+-++. |+..|.++|++.+.-.. .|. .-...|.|+||+..+|.+||.++
T Consensus 14 LPVY~~~k~~g~~~~T~IrkI~G---D~~aL~~dL~~~l~~~~~~~~~~~V~---~~~g~i~IkG~~~~~Vk~wL~~~ 85 (87)
T PF05046_consen 14 LPVYLDIKNGGNRKITVIRKIEG---DIWALKKDLRKFLGEKPKKKIDVRVN---ELTGHIEIKGDHVEEVKKWLLEK 85 (87)
T ss_pred ccEEEEEeCCCcEeEEEEEeecC---CHHHHHHHHHHHhhhhcCCCcceEEe---ecCCEEEEcCccHHHHHHHHHHC
Confidence 33444444 47899999999998 99999999999886433 332 24579999999999999999874
No 15
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=93.77 E-value=0.15 Score=41.03 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=52.3
Q ss_pred CCCcEEEEEEeecCCeeEEEEEccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhC
Q 029248 101 ERQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (196)
Q Consensus 101 ~~~~I~I~~~~R~~rK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~ 176 (196)
..++..+.++ |+| |+|.+|... .-+..-+.+.|.+-+|+.+++ .++..+|+|.+.....+-++..|
T Consensus 29 ~~p~~~v~~e---G~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-----~~~~lii~G~~~~~~i~~~L~~y 98 (138)
T PRK03988 29 EVPKPDVRIE---GNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-----EGGRLILQGKFSPRVINEKIDRY 98 (138)
T ss_pred eCCCCeEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-----cCCEEEEEEeeCHHHHHHHHHHH
Confidence 3566666666 444 999998753 568999999999999999999 34899999999887777666655
No 16
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=93.70 E-value=0.16 Score=40.63 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=51.8
Q ss_pred CCCcEEEEEEeecCCeeEEEEEccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhC
Q 029248 101 ERQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (196)
Q Consensus 101 ~~~~I~I~~~~R~~rK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~ 176 (196)
..++..+.++ |+| |+|.+|... .-+..-+.|.|..-+++.+++ .++..+|+|.+.....+-++..|
T Consensus 24 ~mP~~~v~~e---G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i-----~~~rlii~G~~~~~~i~~~L~~y 93 (133)
T TIGR00311 24 EVPKAYIVIE---GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNL-----EGGRLILQGKFTHFLLNERIEDY 93 (133)
T ss_pred cCCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCcee-----cCCEEEEEeecCHHHHHHHHHHH
Confidence 3556666666 444 999998753 568999999999999999999 34799999999987777666655
No 17
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=93.33 E-value=0.23 Score=38.44 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=51.9
Q ss_pred CCcEEEEEEeecCCeeEEEEEccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhC
Q 029248 102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (196)
Q Consensus 102 ~~~I~I~~~~R~~rK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~ 176 (196)
.++..+.++ |++ -|+|.+|... .-++.-+.|.|..-+++.+++ ++.+..+|+|.+.....+-++..|
T Consensus 6 ~p~~~v~~e---G~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~i----d~~~rlii~G~~~~~~i~~~l~~y 76 (110)
T smart00653 6 MPPPQVLRE---GKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSI----DGKGRLIVNGRFTPKKLQDLLRRY 76 (110)
T ss_pred cCCCeEEEE---cCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeE----CCCCeEEEEEeeCHHHHHHHHHHH
Confidence 455566666 433 6889998753 568999999999999999999 455899999999887777666555
No 18
>PRK14434 acylphosphatase; Provisional
Probab=92.06 E-value=0.63 Score=34.70 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=52.3
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcc-cceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCC-CCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFA-TGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVP-ETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfa-cg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip-~~~I~~~~ 188 (196)
-.|+|.-. |+-.......++++++ =.|.|...++|.-+|.+||+-.+.|..|+.....+-| ...|+-++
T Consensus 6 i~v~G~VQ-GVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~pp~a~V~~v~ 76 (92)
T PRK14434 6 MIVSGRVQ-GVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPSKWAKVTYVD 76 (92)
T ss_pred EEEEEeec-ceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 45677777 8888899999999999 9999987777778999999865566666655544654 56665543
No 19
>PRK14451 acylphosphatase; Provisional
Probab=91.63 E-value=0.86 Score=33.72 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=52.0
Q ss_pred EEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 120 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
.|+|.-. |+-....+..++.+++-.|.|-..++|.-+|.+||+- +.|.+|+.....+-|...|+.++
T Consensus 8 ~V~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~ 74 (89)
T PRK14451 8 YISGRVQ-GVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKE-DKLEEFYTWLQKGPLNARVDVCT 74 (89)
T ss_pred EEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHhhCCCceEEEEEE
Confidence 3788877 8999999999999999999998888888999999987 44777766555343445555543
No 20
>PRK14449 acylphosphatase; Provisional
Probab=91.49 E-value=0.93 Score=33.48 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=53.1
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-+|+|.-. |+-.......++.+++=.|.|...+++.-+|.+||+- +.|.+|+.....+-|...|+.++
T Consensus 7 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l~~~~~~a~V~~i~ 74 (90)
T PRK14449 7 LRITGHVQ-GVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINFIKTGLRWARVDNVE 74 (90)
T ss_pred EEEEEeec-CcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHHHhhCCCceEEEEEE
Confidence 45688776 8999999999999999999998888888999999987 44777766655454566666543
No 21
>PRK14444 acylphosphatase; Provisional
Probab=91.37 E-value=1.1 Score=33.40 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=50.4
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
-.|+|.-. |+-....+..++.+++=+|.|...++|.-+|.+||+- +.|.+|+.....+-|...|+.+
T Consensus 8 i~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~i 74 (92)
T PRK14444 8 VFISGRVQ-GVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISWCYSGPSHARVERV 74 (92)
T ss_pred EEEEEeeC-CcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHHhCCCCcEEEEE
Confidence 45688877 8899999999999999999998777777899999995 4466666554423234455544
No 22
>PRK14437 acylphosphatase; Provisional
Probab=90.82 E-value=1 Score=34.79 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=51.1
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
-.|+|.-. |+-...+...++.+++=.|.|...++|.-+|.+||+-. .|.+|+.....+-|...|+-+
T Consensus 27 i~V~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~ie~f~~~L~~gP~~a~V~~i 93 (109)
T PRK14437 27 ATVSGKVQ-GVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERD-SIMILTEWLWEGPPQAAVSNV 93 (109)
T ss_pred EEEEEecC-CcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHH-HHHHHHHHHHhCCCceEEEEE
Confidence 35688877 89999999999999999999988888889999999875 566655444434344455544
No 23
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=90.74 E-value=0.59 Score=39.58 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=50.9
Q ss_pred CCcEEEEEEeecCCeeEEEEEccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhC
Q 029248 102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (196)
Q Consensus 102 ~~~I~I~~~~R~~rK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~ 176 (196)
.+...+.++. +| |+|.+|... .-+..-+.|.|..-|++.+++ .++..+|+|.+...-.+-++..|
T Consensus 26 ~p~~~v~~eG---~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~-----~~~~~ii~G~~~~~~i~~~l~~y 94 (201)
T PRK12336 26 IPEPKIFIEG---KT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGKI-----EGGRAVFNGKFTEEDIQAAIDAY 94 (201)
T ss_pred cCCceEEEEc---Cc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCccee-----cCCEEEEEeeeCHHHHHHHHHHH
Confidence 5556666663 33 999998753 567999999999999999999 34689999999887777666655
No 24
>PRK14425 acylphosphatase; Provisional
Probab=90.62 E-value=0.93 Score=33.88 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=49.4
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-.|+|.-. |+-.......++.+++=.|.|...++|.-+|++||+-.. |.+|+.....+-|...|+-++
T Consensus 10 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~-le~f~~~l~~gp~~a~V~~i~ 77 (94)
T PRK14425 10 VRITGRVQ-GVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSA-ISAMIERFRRGPPGASVSGVE 77 (94)
T ss_pred EEEEEeEe-cccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHH-HHHHHHHHhhCCCceEEEEEE
Confidence 45677776 888899999999999999999888888899999997654 444544433243445555443
No 25
>PRK14436 acylphosphatase; Provisional
Probab=90.36 E-value=1.4 Score=32.77 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=51.5
Q ss_pred EEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 120 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
.|+|.-. |+-.......++.+++=.|.|...+++.-+|.+||+- +.|.+|+.....+-|...|+.++
T Consensus 9 ~v~G~VQ-GVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~ 75 (91)
T PRK14436 9 RIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGWAHQGPPLARVTRVE 75 (91)
T ss_pred EEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHhhCCCceEEEEEE
Confidence 5677776 8888999999999999999998888888899999987 44777776554344455565543
No 26
>KOG4034 consensus Uncharacterized conserved protein NOF (Neighbor of FAU) [Function unknown]
Probab=89.95 E-value=0.91 Score=37.60 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=45.8
Q ss_pred CcEEEEEEeecCCeeEEEEEccCCCCCCHHHHHHHHhhhc--ccceeeee-CCCCCceEEEcCCchHHHHHHHhhhC
Q 029248 103 QEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKF--ATGASVVK-GPTEKEQIDVQGDISYDIVEFITDTW 176 (196)
Q Consensus 103 ~~I~I~~~~R~~rK~VT~V~GLe~f~idlk~laK~lkkkf--acg~SV~k-~~~~~~eI~IQGD~~~~v~~~L~~~~ 176 (196)
-+|-..+..| |+|.+|+|+.++. |+-.|-+.|...+ .=+.|+.. ...-...|.+-||+.+.|.+||.++.
T Consensus 96 lPVYl~~k~~-G~k~lT~IRkVeG---Di~aLe~DL~s~L~~~~~~s~~t~VnelsgqI~~~g~~v~~vr~~L~eKG 168 (169)
T KOG4034|consen 96 LPVYLDYKQR-GNKILTVIRKVEG---DIWALENDLRSTLEMSPKKSYATHVNELSGQIVLKGNHVDTVREWLQEKG 168 (169)
T ss_pred cceEEeeecC-CcEEEEEEEeecc---cHHHHHHHHHHHHhhccCCChhhhhhhhcceEEEeCChHHHHHHHHHHcc
Confidence 3444444433 8899999999997 5555555555432 22333321 11234799999999999999999863
No 27
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=89.93 E-value=0.33 Score=38.36 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=50.5
Q ss_pred CCCCcEEEEEEeecCCeeEEEEEccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhh
Q 029248 100 KERQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT 175 (196)
Q Consensus 100 ~~~~~I~I~~~~R~~rK~VT~V~GLe~f----~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~ 175 (196)
=..+++.|.++.+ .-|+|.+|... .-++.-+++.|..-+++.+++ ++.+...|+|.+...-.+-++..
T Consensus 17 ~kmP~~~v~~eG~----~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~i----d~~~~lii~G~~~~~~i~~~L~~ 88 (125)
T PF01873_consen 17 YKMPPPQVKIEGK----KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSI----DGKGRLIINGRFSSKQIQDLLDK 88 (125)
T ss_dssp -CCCT--EEEETS----TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEE----ETTTEEEEESSSSCCHHHHHHHH
T ss_pred eecCCCeEEEEcc----ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEE----CCCCEEEEEEecCHHHHHHHHHH
Confidence 3467777777744 35889998853 458999999999999999999 34489999999876655554444
Q ss_pred C
Q 029248 176 W 176 (196)
Q Consensus 176 ~ 176 (196)
|
T Consensus 89 f 89 (125)
T PF01873_consen 89 F 89 (125)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>PRK14422 acylphosphatase; Provisional
Probab=89.74 E-value=1.8 Score=32.32 Aligned_cols=68 Identities=9% Similarity=-0.014 Sum_probs=51.8
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-.|+|.-. |+-...+...++.+++=.|.|...++|.-+|.+||+-.. |.+|+.....+-|...|+-++
T Consensus 10 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gp~~a~V~~i~ 77 (93)
T PRK14422 10 AWVHGHVQ-GVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAA-CEKLLQLLRGDDTPGRVDKVV 77 (93)
T ss_pred EEEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHHhCCCCcEEEEEE
Confidence 45678777 889999999999999999999888888889999998754 666665544453445555543
No 29
>PRK14443 acylphosphatase; Provisional
Probab=89.56 E-value=1.3 Score=33.20 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=49.7
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCC-CCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVP-ETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip-~~~I~~~ 187 (196)
-.|+|.-. |+-....+..++.+++=.|.|...+++.-+|.+||+-.. |.+|+.....+-| ...|+-+
T Consensus 8 i~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~l~~g~p~~a~V~~v 75 (93)
T PRK14443 8 LRVTGFVQ-GVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEEN-LNKFIDAIKKGPSPGCRIEHV 75 (93)
T ss_pred EEEEEeeC-CccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 45677777 888899999999999999999887888899999998433 5555544443554 4555544
No 30
>PRK14438 acylphosphatase; Provisional
Probab=89.51 E-value=1.4 Score=32.70 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=51.6
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-.|+|.-. |+-....+..++.+++=.|.|...++|.-+|.+||+- +.|.+|+.....+-|...|+.++
T Consensus 7 i~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~ 74 (91)
T PRK14438 7 VTVKGLVQ-GVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDWCHHGPSRARVSGVI 74 (91)
T ss_pred EEEEEecC-CcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHHHhhCCCCcEEEEEE
Confidence 45678777 8888999999999999999998887777899999986 44777665554343445565543
No 31
>PRK14446 acylphosphatase; Provisional
Probab=89.46 E-value=1.2 Score=33.09 Aligned_cols=67 Identities=10% Similarity=0.187 Sum_probs=51.5
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
-.|+|.-. |+-..-+...++++++=.+.|...++|.-+|.+||+-. .|.+|+.....+-|...|+.+
T Consensus 6 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~l~~gP~~a~V~~v 72 (88)
T PRK14446 6 FVVSGVVQ-GVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAWLWQGPPAATVAAV 72 (88)
T ss_pred EEEEEecC-CeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHHHhhCCCceEEEEE
Confidence 35678777 88889999999999999999988888889999999864 566665554434455556554
No 32
>PRK14440 acylphosphatase; Provisional
Probab=89.35 E-value=1.9 Score=32.00 Aligned_cols=67 Identities=12% Similarity=0.118 Sum_probs=49.9
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
-+|+|.-. |+-........+.+++=.|.|...+++.-+|.+||+- +.|.+|+.....+=|...|+.+
T Consensus 7 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l~~gp~~a~V~~i 73 (90)
T PRK14440 7 ARVYGLVQ-GVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLERIKQGPPAAEVEKV 73 (90)
T ss_pred EEEEEeEe-ccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHHHhhCCCCcEEEEE
Confidence 45677666 7888889999999999999998887788899999987 6677776555434333445543
No 33
>PRK14452 acylphosphatase; Provisional
Probab=89.34 E-value=2.1 Score=32.90 Aligned_cols=68 Identities=10% Similarity=0.073 Sum_probs=51.4
Q ss_pred EEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 118 ITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 118 VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
--.|+|.-. |+-....+..++.+++=.|.|...++|.-+|.+||+.. .|.+|+.-...+-|...|+.+
T Consensus 23 ~i~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~~~l~~gP~~A~V~~v 90 (107)
T PRK14452 23 RFLIEGRVQ-GVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELRAWCERGPPGARVKRV 90 (107)
T ss_pred EEEEEEeec-CcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHHHhcCCCCcEEEEE
Confidence 356788887 89999999999999999999988888889999999964 566664333334345555544
No 34
>PRK14445 acylphosphatase; Provisional
Probab=89.23 E-value=1.4 Score=32.53 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=51.3
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-+|+|.-. |+-.......++.+++=.|.|-..++|.-+|.+||+-.. |.+|+.....+=|...|+.++
T Consensus 8 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~l~~gP~~a~V~~i~ 75 (91)
T PRK14445 8 LIVSGLVQ-GVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGM-IDELIKQAERGPSRSSVTSIM 75 (91)
T ss_pred EEEEEEEc-CcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHHhCCCCcEEEEEE
Confidence 45677777 888899999999999999999888888889999998743 666665554232345565543
No 35
>PRK14442 acylphosphatase; Provisional
Probab=89.22 E-value=1.8 Score=32.13 Aligned_cols=67 Identities=10% Similarity=0.059 Sum_probs=50.7
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
-+|+|.-. |+-....+..++.+++=.|.|...++|.-+|.+||+.. .|.+|+.....+=|...|+.+
T Consensus 8 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v 74 (91)
T PRK14442 8 AYVGGRVQ-GVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALERWLGRGPRHAEVSAV 74 (91)
T ss_pred EEEEEecC-CccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHHHhhCCCCeEEEEE
Confidence 45688877 88899999999999999999988888889999999876 466666554423233445544
No 36
>PRK14429 acylphosphatase; Provisional
Probab=89.08 E-value=1.5 Score=32.37 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=50.1
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-.|+|.-. |+-.......++.+++=.|.|...++|.-+|.+||+-.. |.+|+.....+-|...|+.++
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-i~~f~~~l~~gp~~a~V~~i~ 73 (90)
T PRK14429 6 IKLTGKVQ-GVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPA-VDNLIAWCEVGVPCTEVLRVT 73 (90)
T ss_pred EEEEEeec-CeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHH-HHHHHHHHhhCCCceEEEEEE
Confidence 34577666 788889999999999999999888878889999998753 555555444463444555543
No 37
>PRK14433 acylphosphatase; Provisional
Probab=88.85 E-value=1.9 Score=31.76 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=50.8
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
-.|+|.-. |+-.......++.+++=.|.|...+++.-+|.+|||-. .|.+|+.....+=|...|+.+
T Consensus 5 i~v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gP~~a~V~~i 71 (87)
T PRK14433 5 ALVSGRVQ-GVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHWLRRGPRHARVEAV 71 (87)
T ss_pred EEEEEeee-CcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEE
Confidence 35677666 88889999999999999999988888878999999974 677777665534333445544
No 38
>PRK14428 acylphosphatase; Provisional
Probab=88.85 E-value=2 Score=32.49 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=51.5
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
-.|+|.-. |+-..-.+..++.+++=.|.|-..++|.-+|.+||+- +.|.+||.....+=|...|+.+
T Consensus 12 i~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~l~~gP~~a~V~~v 78 (97)
T PRK14428 12 IVVTGLVQ-GVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQLAIGPRWSEVSHV 78 (97)
T ss_pred EEEEEecC-CccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHHHhhCCCccEEEEE
Confidence 45678777 8899999999999999999998888888999999985 5577776665533344455443
No 39
>PRK14435 acylphosphatase; Provisional
Probab=88.71 E-value=1.9 Score=31.90 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=50.6
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
-.|+|.-. |+-.......++.+++=.|.|...+++.-+|.+||+- +.|.+|+.....+=|...|+-+
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~l~~gp~~a~V~~v 72 (90)
T PRK14435 6 IRVEGIVQ-GVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNEVAKGPPAAVVTNV 72 (90)
T ss_pred EEEEEEeC-CcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHhhCCCCcEEEEE
Confidence 45677777 8888999999999999999998888888999999987 4477776555433344445443
No 40
>PRK14427 acylphosphatase; Provisional
Probab=88.69 E-value=1.7 Score=32.39 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=51.4
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-.|+|.-. |+-...+.+.++.+++=.|.|...+++.-+|.+||+... |.+|+.....+=|...|+-++
T Consensus 10 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~-i~~f~~~l~~~p~~a~V~~i~ 77 (94)
T PRK14427 10 ARVFGVVQ-GVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQ-VEKLLDWLNSDRAPGRVERVD 77 (94)
T ss_pred EEEEEEeC-CcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHhhCCCCcEEEEEE
Confidence 45677776 888899999999999999999888778789999998743 777765554453344455543
No 41
>PRK14420 acylphosphatase; Provisional
Probab=88.58 E-value=2 Score=31.59 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=51.0
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-.|+|.-. |+-.......++.+++=.|.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++
T Consensus 6 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~~p~~a~V~~i~ 73 (91)
T PRK14420 6 IIVDGRVQ-GVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAIEKGSPFSKVTDVH 73 (91)
T ss_pred EEEEEeeC-CcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHHHhCCCCCEEEEEE
Confidence 45677666 7888888999999999999998888777899999974 66777766554464454565543
No 42
>PRK14423 acylphosphatase; Provisional
Probab=87.90 E-value=1.9 Score=31.94 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=50.5
Q ss_pred EEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 120 ~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
.|+|.-. |+-....+..++.+++=.|.|...++|.-+|.+||+-. .|.+|+.....+-|...|+.++
T Consensus 10 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gp~~a~V~~v~ 76 (92)
T PRK14423 10 FVSGRVQ-GVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEWCHEGSPAAVVEDVE 76 (92)
T ss_pred EEEEecC-CeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHHHHhCCCceEEEEEE
Confidence 4577777 88889999999999999999988877778999999864 5666665544344554555543
No 43
>PRK14426 acylphosphatase; Provisional
Probab=87.78 E-value=2.6 Score=31.27 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=49.9
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCC-CcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPE-TAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~-~~I~~~ 187 (196)
-.|+|.-. |+-.......++.+++=.|.|...+++.-+|.+||+-. .|.+|+.....+.|+ ..|+.+
T Consensus 8 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~g~P~~a~V~~i 75 (92)
T PRK14426 8 AWVYGRVQ-GVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEE-QVEKLMEWLKEGGPRSARVDRV 75 (92)
T ss_pred EEEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHH-HHHHHHHHHhcCCCCCeEEEEE
Confidence 35677776 78889999999999999999988888888999999963 366665554445444 345544
No 44
>PRK14450 acylphosphatase; Provisional
Probab=87.55 E-value=3.2 Score=30.60 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=48.6
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCC-ceEEEcCC--chHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEK-EQIDVQGD--ISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~-~eI~IQGD--~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-+|+|.-. |+-....+..++.+++=.|.|...++|. -+|.+||+ ..+...++|. .+=|...|+-++
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~---~gp~~a~V~~v~ 74 (91)
T PRK14450 6 AIVKGKVQ-GVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR---SGPPRAEVKEVE 74 (91)
T ss_pred EEEEEEec-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh---hCCCCcEEEEEE
Confidence 35777776 8888999999999999999998777775 79999998 4555555553 243445555543
No 45
>PRK14447 acylphosphatase; Provisional
Probab=87.52 E-value=2.5 Score=31.61 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=50.4
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCC-CceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTE-KEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~-~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-.|+|.-. |+-...+++.++.+++-.|.|...++| .-+|.+||+ .+.|.+|+.....+=|...|+.++
T Consensus 8 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~l~~gp~~a~V~~v~ 76 (95)
T PRK14447 8 LFIRGKVQ-GVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEWARVGPPGARVEDVE 76 (95)
T ss_pred EEEEEecC-CccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHHHhhCCCCeEEEEEE
Confidence 45688887 899999999999999999999887777 479999998 566666665433233444455543
No 46
>PRK14421 acylphosphatase; Provisional
Probab=86.76 E-value=2.8 Score=31.80 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=49.6
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
-+|+|.-. |+-....+..++.+++=.|.|...++|.-+|.+||+-.. |.+|+.....+=|...|+-+
T Consensus 8 ~~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gP~~a~V~~v 74 (99)
T PRK14421 8 VTIRGRVQ-GVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADA-VAEMIARCRRGPSAARVDAV 74 (99)
T ss_pred EEEEEeEc-CccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 35677777 888899999999999999999877777799999998743 66665544423334455444
No 47
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=86.34 E-value=2.3 Score=31.01 Aligned_cols=68 Identities=25% Similarity=0.288 Sum_probs=50.2
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-+|+|.-. |+-....++.++.+++=.|.|...+++.-+|++||+- +.|.+||.....+-|...|.-++
T Consensus 8 i~v~G~VQ-GVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~l~~g~p~a~V~~i~ 75 (91)
T PF00708_consen 8 IIVSGRVQ-GVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKWLKKGPPPARVDEIE 75 (91)
T ss_dssp EEEEEETS-SSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHHHHHSSTTSEEEEEE
T ss_pred EEEEEEEC-cCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHHHHhCCCCcEEEEEE
Confidence 46888777 8999999999999999999998888787999999965 44555554444355656665543
No 48
>PRK14432 acylphosphatase; Provisional
Probab=85.60 E-value=3.8 Score=30.56 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=50.9
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEc-CCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQ-GDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQ-GD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-+|+|.-. |+-.......++.+++=.|.|-..++|.-+|.+| ||- +.|.+|+.....+=|...|+.++
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~l~~gp~~a~V~~v~ 74 (93)
T PRK14432 6 YFISGKVQ-GVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKLLKNGNKYSNIENIE 74 (93)
T ss_pred EEEEEeec-CeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHHHHhCCCccEEEEEE
Confidence 45777776 7888899999999999999998888888899998 885 56777766554463344554443
No 49
>PRK14448 acylphosphatase; Provisional
Probab=85.58 E-value=4.4 Score=29.95 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=50.1
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
-.|+|.-. |+-.....+.++.+++=.|.|-..+++.-+|.+||+-. .|.+|+.....+-|...|+-+
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~v~~f~~~l~~gp~~a~V~~v 72 (90)
T PRK14448 6 FIVYGHVQ-GVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDA-QIAAFRDWLQHGPPTAVVCNV 72 (90)
T ss_pred EEEEEeec-CcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHH-HHHHHHHHHHhCCCceEEEEE
Confidence 46778777 88999999999999999999988888888999999873 366666554423233444443
No 50
>PRK14439 acylphosphatase; Provisional
Probab=85.53 E-value=3.4 Score=34.33 Aligned_cols=69 Identities=13% Similarity=0.062 Sum_probs=51.3
Q ss_pred EEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCC-CCcEEEcc
Q 029248 118 ITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVP-ETAIYFIE 188 (196)
Q Consensus 118 VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip-~~~I~~~~ 188 (196)
--.|+|.-+ |+-.......++.+++=.|.|-..++|.-+|++||+-.. |.+|+.....+-| ...|+.++
T Consensus 78 ~i~VsGrVQ-GVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~-Ie~Fi~~L~~~gPp~A~Ve~I~ 147 (163)
T PRK14439 78 IAWVYGRVQ-GVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQ-VEKLMQWLKSGGPRSARVERVL 147 (163)
T ss_pred EEEEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHhhCCCCCeEEEEEE
Confidence 446788887 899999999999999999999877888899999998744 5555544432234 44555543
No 51
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=85.02 E-value=0.81 Score=32.44 Aligned_cols=29 Identities=31% Similarity=0.661 Sum_probs=21.7
Q ss_pred eeeEeCCCCCCCccccccCCChhhHHHHHHHhCCCc
Q 029248 8 VRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPEL 43 (196)
Q Consensus 8 ~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~~~p~l 43 (196)
++|.||.-|+ |.+-+..-.+-|...+|+.
T Consensus 1 V~IeyC~~C~-------y~~Ra~~l~q~L~~~Fp~~ 29 (72)
T TIGR02174 1 VEIEYCGSCG-------YKPRAAWLKQELLEEFPDL 29 (72)
T ss_pred CEEEECCCCC-------ChHHHHHHHHHHHHHCCCC
Confidence 5799999999 6666666666677777754
No 52
>PRK14441 acylphosphatase; Provisional
Probab=84.71 E-value=4.1 Score=30.29 Aligned_cols=68 Identities=13% Similarity=0.245 Sum_probs=49.5
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-.|+|.-. |+-.......++.+++=.|.|...+++.-+|.+||+-. .|..|+.....+=|...|+.++
T Consensus 9 i~v~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v~ 76 (93)
T PRK14441 9 IVVSGRVQ-GVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERA-AVGALVRWCHAGPPAARVDRVE 76 (93)
T ss_pred EEEEEecC-CccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEEE
Confidence 45678777 88899999999999999999988777778999999843 5555544433233345565543
No 53
>PRK14424 acylphosphatase; Provisional
Probab=82.00 E-value=7.6 Score=29.07 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=45.8
Q ss_pred EEEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhC
Q 029248 118 ITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (196)
Q Consensus 118 VT~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~ 176 (196)
--+|+|.-. |+-.......++.+++-.|.|...++|.-+|.+||+-.. |.+|+....
T Consensus 10 ~~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-v~~f~~~l~ 66 (94)
T PRK14424 10 YVRVRGVVQ-GVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQ-IDRMLAWLR 66 (94)
T ss_pred EEEEEEeec-CCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHH-HHHHHHHHH
Confidence 456777777 888899999999999999999888878789999998743 666655444
No 54
>PRK14430 acylphosphatase; Provisional
Probab=79.53 E-value=8.3 Score=28.64 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=47.3
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
-.|+|.-. |+-....+..++.+++=.|.|-..++|.-+|.+||+- +.|.+|+.....+=|...|+-+
T Consensus 8 i~v~G~VQ-GVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v 74 (92)
T PRK14430 8 LVAHGRVQ-GVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTV-RQLEALRAWMEAGPPAAQVTKV 74 (92)
T ss_pred EEEEEeec-ceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHHhCCCceEEEEE
Confidence 45667666 7777888999999999999998887788899999975 4555554443323344455444
No 55
>PRK14431 acylphosphatase; Provisional
Probab=79.11 E-value=8 Score=28.55 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=48.1
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCC-CCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV-PETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~i-p~~~I~~~ 187 (196)
-.|+|.-. |+-..-.+..++++++-.|.|...++ +-+|.+||+- +.|.+|+.....+- |...|+.+
T Consensus 6 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~-~~l~~f~~~l~~g~p~~a~V~~v 72 (89)
T PRK14431 6 LQVFGRVQ-GVGFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDD-ADLERFIQGVIEGASPASNVTSY 72 (89)
T ss_pred EEEEEecC-CeeEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCH-HHHHHHHHHHhcCCCCcEEEEEE
Confidence 35677777 88888999999999999999977766 4999999976 33555554444355 35566554
No 56
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=76.57 E-value=2.4 Score=30.03 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=22.3
Q ss_pred eeeEeCCCCCCCccccccCCChhhHHHHHHHhCCCch
Q 029248 8 VRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELY 44 (196)
Q Consensus 8 ~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~~~p~l~ 44 (196)
+.|.||..|++-+- +...++-|...+|+.+
T Consensus 3 V~IeYC~~C~~~~~-------a~~l~~~l~~~fp~~~ 32 (76)
T PF10262_consen 3 VTIEYCTSCGYRPR-------ALELAQELLQTFPDRI 32 (76)
T ss_dssp EEEEEETTTTCHHH-------HHHHHHHHHHHSTTTC
T ss_pred EEEEECCCCCCHHH-------HHHHHHHHHHHCCCcc
Confidence 78999999985444 5677777777777633
No 57
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=68.52 E-value=29 Score=25.95 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=52.2
Q ss_pred EEEEccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 119 T~V~GLe~f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
-.|+|--+ |+......+..+..++-.|-|-..++|.-+|+.||+-.. +..|+.....|-|.-.|+.+
T Consensus 8 ~~V~GrVQ-GVGFR~~~~~~A~~lgl~G~V~N~~DGsVeiva~G~~~~-v~~~~~~l~~g~~~a~V~~v 74 (92)
T COG1254 8 ARVYGRVQ-GVGFRYFTRSEALRLGLTGWVKNLDDGSVEIVAEGPDEA-VEKFIEWLRKGPPAAKVERV 74 (92)
T ss_pred EEEEEEec-cccHHHHHHHHHHHCCCEEEEEECCCCeEEEEEEcCHHH-HHHHHHHHHhCCCceEEEEE
Confidence 45677666 888999999999999999999888888899999999887 77776554446444444444
No 58
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=48.42 E-value=27 Score=28.60 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=40.6
Q ss_pred EEEEEccCC----CCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhh
Q 029248 118 ITIVKGLDL----FGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT 175 (196)
Q Consensus 118 VT~V~GLe~----f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~ 175 (196)
.|++.++.. -+-|++-+++.|++-+++.+++ +++...++||-+.+....-....
T Consensus 43 ~Ti~~Nf~dia~~l~rDp~h~~k~l~kel~t~g~~----d~~~rlvl~g~f~~~~i~~~i~~ 100 (151)
T COG1601 43 RTIIRNFGDIAEALNRDPEHLVKFLKKELGTAGSI----DGKGRLVLQGKFSDSEIVNEIER 100 (151)
T ss_pred hhHHHhHHHHHHHhcCCHHHHHHHHHHHhcccccc----CCcceEEEEecccHHHHHHHHHH
Confidence 466666542 3568999999999999999999 56589999998877655443333
No 59
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=44.06 E-value=9.3 Score=23.63 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=5.8
Q ss_pred EeCCCCCCCccc
Q 029248 11 LYCSICSLPAEY 22 (196)
Q Consensus 11 ~YC~vCs~P~EY 22 (196)
.||+.|+-|.++
T Consensus 1 kfC~~CG~~l~~ 12 (34)
T PF14803_consen 1 KFCPQCGGPLER 12 (34)
T ss_dssp -B-TTT--B-EE
T ss_pred CccccccChhhh
Confidence 389999988765
No 60
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=42.95 E-value=11 Score=27.31 Aligned_cols=18 Identities=39% Similarity=0.682 Sum_probs=15.5
Q ss_pred HHHHHHHhCCCchhHHHh
Q 029248 32 CKPWLIKNAPELYPDLLK 49 (196)
Q Consensus 32 Ck~WL~~~~p~l~~~l~~ 49 (196)
=++||..|.|.+.+++.-
T Consensus 47 LkeWLD~nLP~lVErlVr 64 (73)
T PF10691_consen 47 LKEWLDENLPGLVERLVR 64 (73)
T ss_pred HHHHHHhccHHHHHHHHH
Confidence 378999999999998864
No 61
>cd00367 PTS-HPr_like Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate is transferred to HPr by enzyme I (EI). Phospho-HPr then transfers the phosphoryl group to one of several sugar-specific phosphoprotein intermediates. The conserved histidine in the N-terminus of HPr serves as an acceptor for the phosphoryl group of EI. In addition to the phosphotransferase proteins HPr and E1, this family also includes the closely related Carbon Catabolite Repressor (CCR) proteins which use the same phosphorylation mechanism and interact with transcriptional regulators to control expression of genes coding for utilization of less favored carbon sources.
Probab=36.02 E-value=1.4e+02 Score=20.72 Aligned_cols=40 Identities=8% Similarity=0.143 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhh
Q 029248 127 FGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITD 174 (196)
Q Consensus 127 f~idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~ 174 (196)
..+|.+.+...|.=....|..| +|.+.|+-.+++.+-|.+
T Consensus 36 ~~vdakSil~i~~L~~~~G~~i--------~i~~~G~de~~al~~l~~ 75 (77)
T cd00367 36 RKANAKSILGLMSLGAKQGDEI--------TLSAEGEDAEEALEALAE 75 (77)
T ss_pred EEEcHHhHHHHHHcCCCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 3578888888888777777777 888889988888877754
No 62
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=35.34 E-value=56 Score=24.86 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.2
Q ss_pred CCCCcEEEEEEeecCCeeEEEE
Q 029248 100 KERQEVVIEKVVRNKRKCITIV 121 (196)
Q Consensus 100 ~~~~~I~I~~~~R~~rK~VT~V 121 (196)
.....+.+....|=++|+||+|
T Consensus 74 ik~~v~al~~T~Ryk~KyVT~v 95 (100)
T PF04739_consen 74 IKDGVLALGTTHRYKSKYVTTV 95 (100)
T ss_dssp EBTTEEEEEEEEEETTEEEEEE
T ss_pred cCCCeEEEEEEEEecceEEEEE
Confidence 3466889999999999999998
No 63
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=33.37 E-value=87 Score=26.04 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=42.6
Q ss_pred CeeEEEEEccCCCCCCHHHHHHHHhh-hcccceeeeeCCCCCceEEEcCCchH---HHHHHHhhhCCCCCCCcE
Q 029248 115 RKCITIVKGLDLFGVKLSDASKKLGK-KFATGASVVKGPTEKEQIDVQGDISY---DIVEFITDTWPAVPETAI 184 (196)
Q Consensus 115 rK~VT~V~GLe~f~idlk~laK~lkk-kfacg~SV~k~~~~~~eI~IQGD~~~---~v~~~L~~~~~~ip~~~I 184 (196)
|..|++..||+.- ..+++.|.++- ++-.-++| -+++|-|.|--+| .++.+|.+.--++|-.+.
T Consensus 91 rq~i~lk~GI~~e--~AKkIvK~IKd~klKVqa~I-----QGd~vRVtgKkrDDLQ~viallk~~d~~~pLQF~ 157 (161)
T PRK05412 91 KQEVKLKQGIDQE--LAKKIVKLIKDSKLKVQAQI-----QGDQVRVTGKKRDDLQAVIALLRKADLGQPLQFN 157 (161)
T ss_pred EEEEehhhccCHH--HHHHHHHHHHhcCCceeEEe-----cCcEEEEecCCHhHHHHHHHHHHhccCCCCceec
Confidence 4668888888862 46777777663 44566676 6789999997777 556667653227776544
No 64
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=33.14 E-value=25 Score=33.58 Aligned_cols=33 Identities=30% Similarity=0.927 Sum_probs=24.0
Q ss_pred eCCCCCCCccccc-----------cCC-----ChhhHHHHHHHhCCCchh
Q 029248 12 YCSICSLPAEYCE-----------FGP-----DFEKCKPWLIKNAPELYP 45 (196)
Q Consensus 12 YC~vCs~P~EYCE-----------fg~-----~~~kCk~WL~~~~p~l~~ 45 (196)
-|.||+||..+|| |.+ +.+-| .|.-++.|+-|.
T Consensus 382 ~c~vC~~p~~~~~~~~~~~~~~~ey~G~~y~FCS~~C-~~~F~~ePerY~ 430 (465)
T cd01057 382 LCNVCQVPCVFTEDLTAEAPRVLEYNGRKYHFCSEGC-EWIFEQEPERYA 430 (465)
T ss_pred CCCCCCCeeccccCcccccceEEEECCEEEEecCHHH-HHHHHHCHHHHh
Confidence 7999999999873 222 23467 677778898885
No 65
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=31.68 E-value=47 Score=25.52 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.2
Q ss_pred CchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 163 DISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 163 D~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
.+...|.++|.+++ |||.+.|++.
T Consensus 76 ~~s~~i~~~l~~~L-gIp~dRiYI~ 99 (113)
T PTZ00450 76 MMTPRITAAITKEC-GIPAERIYVF 99 (113)
T ss_pred HHHHHHHHHHHHHc-CCCcccEEEE
Confidence 35578899999999 9999999874
No 66
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=31.14 E-value=51 Score=25.40 Aligned_cols=29 Identities=21% Similarity=0.599 Sum_probs=25.4
Q ss_pred EEEcCCchHHHHHHHhhhCCCCCCCcEEEc
Q 029248 158 IDVQGDISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 158 I~IQGD~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
.-++|---+.|..||.+.| ++|...|+++
T Consensus 45 pP~~GKAN~~li~~Lak~~-~v~kS~V~iv 73 (102)
T COG1872 45 PPVDGKANEELIKFLAKTF-GVPKSSVEIV 73 (102)
T ss_pred CCCCcchhHHHHHHHHHHh-CCCcccEEEE
Confidence 3467888899999999999 9999999997
No 67
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=30.03 E-value=9.6 Score=23.97 Aligned_cols=17 Identities=35% Similarity=1.169 Sum_probs=6.0
Q ss_pred CCccccccCCChhhHHHHHHHhC
Q 029248 18 LPAEYCEFGPDFEKCKPWLIKNA 40 (196)
Q Consensus 18 ~P~EYCEfg~~~~kCk~WL~~~~ 40 (196)
||--||+| |+-||..+-
T Consensus 1 m~ryyCdy------C~~~~~~d~ 17 (38)
T PF06220_consen 1 MPRYYCDY------CKKYLTHDS 17 (38)
T ss_dssp --S-B-TT------T--B-S--S
T ss_pred CcCeeccc------ccceecCCC
Confidence 67789998 778885433
No 68
>PF11376 DUF3179: Protein of unknown function (DUF3179); InterPro: IPR021516 This family of proteins has no known function.
Probab=28.31 E-value=30 Score=30.72 Aligned_cols=17 Identities=35% Similarity=0.966 Sum_probs=13.8
Q ss_pred CceeeEeCCCCCCCccc
Q 029248 6 QPVRVLYCSICSLPAEY 22 (196)
Q Consensus 6 ~p~~V~YC~vCs~P~EY 22 (196)
.|+-|.||+.|+--.-|
T Consensus 58 ~pv~vTyCplc~s~~~f 74 (266)
T PF11376_consen 58 EPVAVTYCPLCGSGMAF 74 (266)
T ss_pred EEEEEEECccCCCceEE
Confidence 68999999999865544
No 69
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=27.96 E-value=79 Score=22.73 Aligned_cols=27 Identities=19% Similarity=0.523 Sum_probs=21.7
Q ss_pred cCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 161 QGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 161 QGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
-|---+.|.+||.+.| +||...|+++-
T Consensus 38 ~GkAN~ali~~La~~l-~v~ks~i~i~~ 64 (77)
T PF02594_consen 38 DGKANKALIRFLAKAL-GVPKSDIEIVS 64 (77)
T ss_dssp CCCHHHHHHHHHHHHC-T--TTCEEECC
T ss_pred cChhHHHHHHHHHHHh-CCCcccEEEEe
Confidence 3667889999999999 99999999974
No 70
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.57 E-value=29 Score=32.22 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhcccceeeeeCCC
Q 029248 131 LSDASKKLGKKFATGASVVKGPT 153 (196)
Q Consensus 131 lk~laK~lkkkfacg~SV~k~~~ 153 (196)
|--+|=.++|.|+.-.+|+...+
T Consensus 193 LGh~aVq~AKAMG~rV~vis~~~ 215 (360)
T KOG0023|consen 193 LGHMAVQYAKAMGMRVTVISTSS 215 (360)
T ss_pred cchHHHHHHHHhCcEEEEEeCCc
Confidence 66677788888888888877654
No 71
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=26.99 E-value=29 Score=24.28 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=11.1
Q ss_pred CceeeEeCCCCCCC
Q 029248 6 QPVRVLYCSICSLP 19 (196)
Q Consensus 6 ~p~~V~YC~vCs~P 19 (196)
+-+.--||..|+||
T Consensus 27 yhv~k~~CaaCGfg 40 (61)
T COG2126 27 YHVRKKYCAACGFG 40 (61)
T ss_pred eeeccceecccCCC
Confidence 34566799999998
No 72
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=26.97 E-value=28 Score=31.55 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=10.1
Q ss_pred eeEeCCCCCCCcc
Q 029248 9 RVLYCSICSLPAE 21 (196)
Q Consensus 9 ~V~YC~vCs~P~E 21 (196)
++.|||||+=+|=
T Consensus 184 ~~~~CPvCGS~Pv 196 (308)
T COG3058 184 SRQYCPVCGSMPV 196 (308)
T ss_pred ccccCCCcCCCCc
Confidence 5679999986653
No 73
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=26.04 E-value=2.7e+02 Score=20.43 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=31.5
Q ss_pred CCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhC
Q 029248 129 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (196)
Q Consensus 129 idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~ 176 (196)
+|.+.+...++=-..+|..| +|.+.|+--++..+-|.+.+
T Consensus 44 ~~akSil~lm~Lg~~~G~~i--------~v~~~G~De~~A~~~l~~~~ 83 (90)
T PRK10897 44 AEANSVIALLMLDSAKGRQI--------EVEATGPQEEEALAAVIALF 83 (90)
T ss_pred EchHhHHHHHHhCCCCCCEE--------EEEEECcCHHHHHHHHHHHH
Confidence 57788888888777777777 88999998888877776644
No 74
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=25.83 E-value=28 Score=20.58 Aligned_cols=14 Identities=21% Similarity=0.700 Sum_probs=7.7
Q ss_pred EeCCCCCCCccccc
Q 029248 11 LYCSICSLPAEYCE 24 (196)
Q Consensus 11 ~YC~vCs~P~EYCE 24 (196)
.||+.|+=|...=+
T Consensus 4 rfC~~CG~~t~~~~ 17 (32)
T PF09297_consen 4 RFCGRCGAPTKPAP 17 (32)
T ss_dssp SB-TTT--BEEE-S
T ss_pred cccCcCCccccCCC
Confidence 49999998887643
No 75
>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]
Probab=25.82 E-value=49 Score=27.95 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=20.5
Q ss_pred ChhhHHHHHHHhCCCchhHHHhhhh
Q 029248 28 DFEKCKPWLIKNAPELYPDLLKEAN 52 (196)
Q Consensus 28 ~~~kCk~WL~~~~p~l~~~l~~~~~ 52 (196)
.+++=..|-.+||||+++.|-+...
T Consensus 10 awrrId~W~aeh~pdl~~~l~pgat 34 (191)
T COG4282 10 AWRRIDTWVAEHHPDLLPFLRPGAT 34 (191)
T ss_pred HHHHHHHHHHhcCcccccccCCCcc
Confidence 4667789999999999999876443
No 76
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=24.32 E-value=1.2e+02 Score=21.35 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=23.8
Q ss_pred CHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhh
Q 029248 130 KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT 175 (196)
Q Consensus 130 dlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~ 175 (196)
|.+.+...++=...+|..+ +|.++|+-.+++.+-|.+-
T Consensus 43 dakSil~l~~L~~~~G~~i--------~i~~~G~de~~a~~~i~~~ 80 (84)
T PF00381_consen 43 DAKSILGLMSLGAKKGDEI--------EIEAEGEDEEEALEAIAEF 80 (84)
T ss_dssp ETTSHHHHHHHTBSTTEEE--------EEEEESTTHHHHHHHHHHH
T ss_pred ecCCHHHHhhhhcCCCCEE--------EEEEECcCHHHHHHHHHHH
Confidence 4444444444444444444 7888999998888877653
No 77
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=24.16 E-value=26 Score=25.95 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=7.9
Q ss_pred eCCCCCCCccc
Q 029248 12 YCSICSLPAEY 22 (196)
Q Consensus 12 YC~vCs~P~EY 22 (196)
-||+|.||.+-
T Consensus 22 ~CGiCRm~Fdg 32 (84)
T KOG1493|consen 22 TCGICRMPFDG 32 (84)
T ss_pred ccceEecccCC
Confidence 58888887654
No 78
>PF11388 DotA: Phagosome trafficking protein DotA; InterPro: IPR021528 DotA is essential for intracellular growth in Legionella []. DotA is thought to play an important role in regulating initial phagosome trafficking decisions either upon or immediately after macrophage uptake [].
Probab=23.73 E-value=47 Score=25.46 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=22.1
Q ss_pred EEEccCCCCCCHHHHHHHHhhhcccceee
Q 029248 120 IVKGLDLFGVKLSDASKKLGKKFATGASV 148 (196)
Q Consensus 120 ~V~GLe~f~idlk~laK~lkkkfacg~SV 148 (196)
.++||+...+|...|.|-|++. |++..
T Consensus 3 s~tgle~s~fd~~ql~k~f~~t--c~~~~ 29 (105)
T PF11388_consen 3 SNTGLEKSNFDPAQLTKPFGKT--CQGDY 29 (105)
T ss_pred cccccccccCCHHHhhhhhhcc--ccCch
Confidence 4689999999999999999994 55443
No 79
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=23.61 E-value=37 Score=21.83 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=8.5
Q ss_pred EeCCCCCCCc
Q 029248 11 LYCSICSLPA 20 (196)
Q Consensus 11 ~YC~vCs~P~ 20 (196)
.+|+.|+.|.
T Consensus 18 ~~Cp~C~~PL 27 (41)
T PF06677_consen 18 EHCPDCGTPL 27 (41)
T ss_pred CccCCCCCee
Confidence 4899999985
No 80
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=23.32 E-value=29 Score=30.53 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=9.1
Q ss_pred EeCCCCCCCccccccCC
Q 029248 11 LYCSICSLPAEYCEFGP 27 (196)
Q Consensus 11 ~YC~vCs~P~EYCEfg~ 27 (196)
-|||||+-+|-.-...+
T Consensus 173 g~CPvCGs~P~~s~l~~ 189 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRG 189 (290)
T ss_dssp SS-TTT---EEEEEEE-
T ss_pred CcCCCCCCcCceEEEec
Confidence 59999999987666643
No 81
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=22.55 E-value=44 Score=21.37 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=15.4
Q ss_pred CCChhhHHHHHHHhCCCc
Q 029248 26 GPDFEKCKPWLIKNAPEL 43 (196)
Q Consensus 26 g~~~~kCk~WL~~~~p~l 43 (196)
.+++..|-+|+..+.|.+
T Consensus 14 ~g~~~~a~~~~~~~~~~l 31 (58)
T smart00668 14 KGDWDEALEWLSSLKPPL 31 (58)
T ss_pred cCCHHHHHHHHHHcCHHH
Confidence 478999999999998855
No 82
>PF08421 Methyltransf_13: Putative zinc binding domain; InterPro: IPR013630 This domain is found at the N terminus of bacterial methyltransferases. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=22.42 E-value=42 Score=22.98 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=10.9
Q ss_pred CCceeeEeCCCCCC
Q 029248 5 PQPVRVLYCSICSL 18 (196)
Q Consensus 5 ~~p~~V~YC~vCs~ 18 (196)
.+|+.|.+|..|+|
T Consensus 35 ~~pL~l~~C~~Cgl 48 (62)
T PF08421_consen 35 RYPLDLYVCEDCGL 48 (62)
T ss_dssp EEEEEEEEETTT--
T ss_pred EECCEEEECCCCCc
Confidence 47999999999997
No 83
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=22.05 E-value=40 Score=24.60 Aligned_cols=13 Identities=31% Similarity=0.887 Sum_probs=10.3
Q ss_pred eCCCCCCCccccc
Q 029248 12 YCSICSLPAEYCE 24 (196)
Q Consensus 12 YC~vCs~P~EYCE 24 (196)
||..|+||..-=+
T Consensus 2 ~CQSCGMPl~~~~ 14 (81)
T PF12674_consen 2 FCQSCGMPLSKDE 14 (81)
T ss_pred cCCcCcCccCCcc
Confidence 7999999975444
No 84
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.94 E-value=36 Score=20.70 Aligned_cols=11 Identities=45% Similarity=1.005 Sum_probs=7.2
Q ss_pred eCCCCCCCccc
Q 029248 12 YCSICSLPAEY 22 (196)
Q Consensus 12 YC~vCs~P~EY 22 (196)
-|++|+-|.++
T Consensus 20 ~CP~Cg~~~~~ 30 (34)
T cd00729 20 KCPICGAPKEK 30 (34)
T ss_pred cCcCCCCchHH
Confidence 57777766654
No 85
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.92 E-value=87 Score=23.50 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=18.3
Q ss_pred chHHHHHHHhhhCCCCCCCcEEEc
Q 029248 164 ISYDIVEFITDTWPAVPETAIYFI 187 (196)
Q Consensus 164 ~~~~v~~~L~~~~~~ip~~~I~~~ 187 (196)
+...|.++|.+.+ |||++.|.+.
T Consensus 77 l~~~i~~~l~~~l-gi~~~rv~I~ 99 (116)
T PTZ00397 77 IAAAITKILASHL-KVKSERVYIE 99 (116)
T ss_pred HHHHHHHHHHHHh-CcCcccEEEE
Confidence 3456888888888 9999999874
No 86
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=21.28 E-value=46 Score=24.60 Aligned_cols=14 Identities=29% Similarity=0.788 Sum_probs=10.8
Q ss_pred CceeeEeCCCCCCC
Q 029248 6 QPVRVLYCSICSLP 19 (196)
Q Consensus 6 ~p~~V~YC~vCs~P 19 (196)
+.-+|+||+-|.|-
T Consensus 18 ~~~qVV~C~~C~FV 31 (81)
T PF10891_consen 18 EENQVVYCPKCYFV 31 (81)
T ss_pred ccCCEEEcccccee
Confidence 34579999999863
No 87
>PRK13780 phosphocarrier protein HPr; Provisional
Probab=20.79 E-value=2.8e+02 Score=20.16 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=30.1
Q ss_pred CCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchHHHHHHHhhhC
Q 029248 129 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (196)
Q Consensus 129 idlk~laK~lkkkfacg~SV~k~~~~~~eI~IQGD~~~~v~~~L~~~~ 176 (196)
+|.+.+...+.=...+|..| +|.+.|+-.+++.+-|.+.+
T Consensus 42 vdakSil~lm~Lg~~~G~~v--------~i~a~G~De~~Al~~l~~~l 81 (88)
T PRK13780 42 VNLKSIMGVMSLGVGQGADI--------TISAEGADAADAIAAIEETM 81 (88)
T ss_pred EechhHHHHHhcCCCCCCEE--------EEEEeCcCHHHHHHHHHHHH
Confidence 56677777777777777777 88999998888777665543
No 88
>PRK05090 hypothetical protein; Validated
Probab=20.62 E-value=86 Score=23.64 Aligned_cols=28 Identities=14% Similarity=0.447 Sum_probs=23.9
Q ss_pred EcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 160 VQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 160 IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
+.|---+.+.+||.+.| +||...|+++-
T Consensus 43 veGkAN~ali~~LAk~l-~v~ks~I~i~~ 70 (95)
T PRK05090 43 VDGQANAHLLKFLAKQF-RVAKSQVVIEK 70 (95)
T ss_pred CCChHHHHHHHHHHHHh-CCChhhEEEEe
Confidence 34777889999999999 99999999963
No 89
>PRK01310 hypothetical protein; Validated
Probab=20.19 E-value=87 Score=23.98 Aligned_cols=28 Identities=14% Similarity=0.493 Sum_probs=23.9
Q ss_pred EcCCchHHHHHHHhhhCCCCCCCcEEEcc
Q 029248 160 VQGDISYDIVEFITDTWPAVPETAIYFIE 188 (196)
Q Consensus 160 IQGD~~~~v~~~L~~~~~~ip~~~I~~~~ 188 (196)
+.|---+.+..||...| +||...|+++-
T Consensus 49 v~GkAN~ali~~LA~~l-~v~ks~I~iv~ 76 (104)
T PRK01310 49 EGGEANRALIELLAKAL-GVPKSSVRLLS 76 (104)
T ss_pred CCChHHHHHHHHHHHHh-CCChhhEEEEe
Confidence 34777889999999999 99999999973
Done!