BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029249
         (196 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3O24|A Chain A, Crystal Structure Of The Brevianamide F Prenyltransferase
           Ftmpt1 From Aspergillus Fumigatus
 pdb|3O2K|A Chain A, Crystal Structure Of Brevianamide F Prenyltransferase
           Complexed With Brevianamide F And Dimethylallyl
           S-Thiolodiphosphate
          Length = 474

 Score = 29.6 bits (65), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 127 DSGAETQRDKENTNQVSIYLSTFKRIAKGILLTQ-SEFET 165
           DSG  T +D  NT +  +YL T  R+  G+ LT+  EFET
Sbjct: 122 DSG--TAQDPFNTTRPKVYLETAARLLPGVDLTRFYEFET 159


>pdb|1DRK|A Chain A, Probing Protein-Protein Interactions: The Ribose-Binding
          Protein In Bacterial Transport And Chemotaxis
          Length = 271

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 20/30 (66%)

Query: 65 TVRFTRVKLLRPSDTLSLGHAYRLVTSQEV 94
          TVR T++ L+ P+D+ ++G+A ++     +
Sbjct: 54 TVRGTKILLINPTDSDAVGNAVKMANQANI 83


>pdb|1URP|A Chain A, D-Ribose-Binding Protein From Escherichia Coli
 pdb|1URP|B Chain B, D-Ribose-Binding Protein From Escherichia Coli
 pdb|1URP|C Chain C, D-Ribose-Binding Protein From Escherichia Coli
 pdb|1URP|D Chain D, D-Ribose-Binding Protein From Escherichia Coli
 pdb|2DRI|A Chain A, Probing Protein-Protein Interactions: The Ribose Binding
          Protein In Bacterial Transport And Chemotaxis
          Length = 271

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 20/30 (66%)

Query: 65 TVRFTRVKLLRPSDTLSLGHAYRLVTSQEV 94
          TVR T++ L+ P+D+ ++G+A ++     +
Sbjct: 54 TVRGTKILLINPTDSDAVGNAVKMANQANI 83


>pdb|1DRJ|A Chain A, Probing Protein-Protein Interactions: The Ribose-Binding
          Protein In Bacterial Transport And Chemotaxis
          Length = 271

 Score = 27.7 bits (60), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 20/30 (66%)

Query: 65 TVRFTRVKLLRPSDTLSLGHAYRLVTSQEV 94
          TVR T++ L+ P+D+ ++G+A ++     +
Sbjct: 54 TVRGTKILLINPTDSDAVGNAVKMANQANI 83


>pdb|3RAY|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Pr
           Domain- Containing Protein 11
          Length = 237

 Score = 26.6 bits (57), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 14/90 (15%)

Query: 62  HQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVHENLQTV 121
           H + + F   + +RP + L      R+  S++ MK L +        + QE++H NL   
Sbjct: 160 HSERIYFRACRDIRPGEWL------RVWYSEDYMKRLHS--------MSQETIHRNLARG 205

Query: 122 QEKLIDSGAETQRDKENTNQVSIYLSTFKR 151
           +++L    +E   D     +  I+LS  ++
Sbjct: 206 EKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,592,895
Number of Sequences: 62578
Number of extensions: 137778
Number of successful extensions: 392
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 13
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)