BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029249
         (196 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2Y763|ALR_NITMU Alanine racemase OS=Nitrosospira multiformis (strain ATCC 25196 /
           NCIMB 11849) GN=alr PE=3 SV=1
          Length = 357

 Score = 32.3 bits (72), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 47  PLPSSSVSDEDKQPDHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEV 94
           PL  ++      QP    + R   V+ LRP+D +  GHA+R  +S  V
Sbjct: 220 PLAHTTAEQLGLQPAMTVSSRIISVQTLRPNDGVGYGHAFRAGSSMRV 267


>sp|B5YDE1|PROB_DICT6 Glutamate 5-kinase OS=Dictyoglomus thermophilum (strain ATCC 35947
           / DSM 3960 / H-6-12) GN=proB PE=3 SV=1
          Length = 371

 Score = 32.3 bits (72), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 44  LIIPLPSSSVSDEDKQPDHQKTVRFTR--VKLLRPSDTLSLGHAYRLVTSQEVMKVLRAK 101
           +++ + +SS++DE   P  +K +   R  VKL+R +  + L  +  + + +E+M+ L  +
Sbjct: 7   IVVKVGTSSITDERGNPSGEKILSLVRECVKLMRANKEVVLVSSGAIASGREIMQKLSKR 66

Query: 102 KSAKTKR 108
           K    K+
Sbjct: 67  KDLPAKQ 73


>sp|Q88YI7|UVRA_LACPL UvrABC system protein A OS=Lactobacillus plantarum (strain ATCC
           BAA-793 / NCIMB 8826 / WCFS1) GN=uvrA PE=3 SV=1
          Length = 951

 Score = 31.2 bits (69), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 15  QHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDEDKQPDHQKTVRFTRVKLL 74
           Q+ +  +E  Y     ++V++M     V    P+P        ++      V    VKL 
Sbjct: 768 QYNSETLEVEYKGKNIADVLQMTASEAVKFFEPIPKIR-----RKLQTLVDVGLGYVKLG 822

Query: 75  RPSDTLSLGHAYRLVTSQEVMKVLRAKK----SAKTKRLHQESVHENLQTVQEKLIDSG 129
           +P+ TLS G A R+  + E+ K    K        T  LH E +   L  V ++L+D+G
Sbjct: 823 QPATTLSGGEAQRMKLASELHKQQSGKNFYILDEPTTGLHSEDIRR-LIGVLDRLVDAG 880


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.132    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,539,627
Number of Sequences: 539616
Number of extensions: 2245920
Number of successful extensions: 6992
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6989
Number of HSP's gapped (non-prelim): 16
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)