Query 029249
Match_columns 196
No_of_seqs 108 out of 151
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 16:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m2d_A [2Fe-2S] ferredoxin; th 46.7 12 0.0004 27.2 2.5 28 1-34 56-83 (110)
2 3pm7_A Uncharacterized protein 32.8 6.9 0.00024 28.9 -0.7 32 138-169 37-68 (80)
3 4g06_A Uncharacterized protein 31.0 8.7 0.0003 28.3 -0.4 29 138-166 44-72 (79)
4 3zxw_B Ribulose bisphosphate c 30.5 45 0.0015 25.9 3.5 18 29-46 65-89 (118)
5 2l3a_A Uncharacterized protein 27.4 11 0.00037 28.0 -0.4 29 138-166 39-67 (82)
6 2ltd_A Uncharacterized protein 32.3 14 0.00048 27.3 0.0 30 138-167 37-66 (80)
7 1rbl_M Ribulose 1,5 bisphospha 24.8 38 0.0013 25.9 2.2 38 12-49 39-93 (109)
8 1svd_M Ribulose bisphosphate c 24.1 39 0.0013 25.8 2.1 36 14-49 43-95 (110)
9 1egw_A MADS box transcription 20.3 81 0.0028 22.4 3.1 27 10-37 42-68 (77)
10 3p57_A Myocyte-specific enhanc 19.6 76 0.0026 23.4 2.9 27 10-37 42-68 (90)
No 1
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=46.66 E-value=12 Score=27.22 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=17.1
Q ss_pred CCccccccccEEEEEcCCCeEEeeecCccHhHHh
Q 029249 1 MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVM 34 (196)
Q Consensus 1 MGNCqA~daa~VVIqHP~GrVEr~y~PVSAaEVM 34 (196)
||+|.. +-+|++.||| .+|..|+..+|-
T Consensus 56 lG~C~~---gP~v~V~P~~---~~y~~vt~e~v~ 83 (110)
T 1m2d_A 56 MNASMM---GPVVVVYPDG---VWYGQVKPEDVD 83 (110)
T ss_dssp CSCGGG---CSCEEEETTT---EEECSCCGGGHH
T ss_pred CCccCC---CCEEEEEeCC---EEEecCCHHHHH
Confidence 677753 3333345998 577777766543
No 2
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=32.77 E-value=6.9 Score=28.89 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=26.3
Q ss_pred cccceeeehhhHhhhhccceeccccccccccc
Q 029249 138 NTNQVSIYLSTFKRIAKGILLTQSEFETCTGF 169 (196)
Q Consensus 138 ~~~~~~~w~~~~~~i~~~~~~~~~~~~~~~~~ 169 (196)
..=..|.|.|--.+.+|||-||..|++.-...
T Consensus 37 pKyDIR~W~pdh~kMgKGITLT~eE~~~Lk~~ 68 (80)
T 3pm7_A 37 PKFDLREWAPDHEKMGKGITLTNEEFAELSKT 68 (80)
T ss_dssp CEEEEEEECTTSSSEEEEEEECHHHHHHHHHH
T ss_pred CCccccccCcchhhccCcceeCHHHHHHHHHH
Confidence 34467999999999999999999999764433
No 3
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=31.04 E-value=8.7 Score=28.29 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=24.8
Q ss_pred cccceeeehhhHhhhhccceecccccccc
Q 029249 138 NTNQVSIYLSTFKRIAKGILLTQSEFETC 166 (196)
Q Consensus 138 ~~~~~~~w~~~~~~i~~~~~~~~~~~~~~ 166 (196)
..=..|.|.|--.+.+|||-||..|++.-
T Consensus 44 pKyDIR~W~pdh~kMgKGITLT~eE~~~L 72 (79)
T 4g06_A 44 AKFDIRAWSPDHTKMGKGITLSNEEFQTM 72 (79)
T ss_dssp CEEEEEEECTTSSCBCCCEEECHHHHHHH
T ss_pred CCccccccCcccccccCccccCHHHHHHH
Confidence 34467999999999999999999998753
No 4
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=30.52 E-value=45 Score=25.85 Aligned_cols=18 Identities=17% Similarity=0.505 Sum_probs=14.2
Q ss_pred cHhHHh-------hcCCCcEEEeee
Q 029249 29 TASEVM-------RMNPGHYVSLII 46 (196)
Q Consensus 29 SAaEVM-------~~nPGHyVal~i 46 (196)
.+++|| ++||+|||-++-
T Consensus 65 d~~~Vl~Ele~C~k~~p~~yVRliG 89 (118)
T 3zxw_B 65 NAQDVLNEVQQCRSEYPNCFIRVVA 89 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCceEEEEE
Confidence 567777 679999998655
No 5
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=27.40 E-value=11 Score=27.95 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=24.7
Q ss_pred cccceeeehhhHhhhhccceecccccccc
Q 029249 138 NTNQVSIYLSTFKRIAKGILLTQSEFETC 166 (196)
Q Consensus 138 ~~~~~~~w~~~~~~i~~~~~~~~~~~~~~ 166 (196)
..=..|.|-|--.+..|||-||..|+..-
T Consensus 39 pKyDIR~Wspdh~kMGKGITLT~eE~~~L 67 (82)
T 2l3a_A 39 AKFDIRAWSPDHTKMGKGITLSNEEFQTM 67 (82)
T ss_dssp EEEEEEEECSTTCCCCCCEEECHHHHHHH
T ss_pred CCccccccCcchhhccCcccccHHHHHHH
Confidence 34457999999999999999999998753
No 6
>2ltd_A Uncharacterized protein YDBC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Lactococcus lactis subsp}
Probab=32.33 E-value=14 Score=27.26 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=25.5
Q ss_pred cccceeeehhhHhhhhccceeccccccccc
Q 029249 138 NTNQVSIYLSTFKRIAKGILLTQSEFETCT 167 (196)
Q Consensus 138 ~~~~~~~w~~~~~~i~~~~~~~~~~~~~~~ 167 (196)
..=..|.|.|--.+..|||-||..|++.-.
T Consensus 37 pKyDIR~Wspdh~kMGKGITLT~eE~~~L~ 66 (80)
T 2ltd_A 37 PKYDIRTWSPDHEKMGKGITLSEEEFGVLL 66 (80)
Confidence 345679999999999999999999987643
No 7
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=24.82 E-value=38 Score=25.87 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=25.6
Q ss_pred EEEEcCC-CeEEeeecCc---------cHhHHh-------hcCCCcEEEeeecCC
Q 029249 12 LVIQHPN-GRIERLYWPV---------TASEVM-------RMNPGHYVSLIIPLP 49 (196)
Q Consensus 12 VVIqHP~-GrVEr~y~PV---------SAaEVM-------~~nPGHyVal~i~~p 49 (196)
+-|.|-+ ++..--||-. .+++|| ++||+|||-++--.+
T Consensus 39 p~lEf~d~~~~~~~yW~mwklPmf~~~d~~~Vl~Ele~C~k~~p~~yVRligfD~ 93 (109)
T 1rbl_M 39 PLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGDCYIRVAGFDN 93 (109)
T ss_dssp EEEEEESCCCTTCCCCEECSSCCTTCCCHHHHHHHHHHHHHHCTTSEEEEEEEET
T ss_pred EEEEeccCccccccEEeecccCCcCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 3344533 6666667774 688888 589999998665333
No 8
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=24.10 E-value=39 Score=25.84 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=23.6
Q ss_pred EEcCC-CeEEeeecCc---------cHhHHh-------hcCCCcEEEeeecCC
Q 029249 14 IQHPN-GRIERLYWPV---------TASEVM-------RMNPGHYVSLIIPLP 49 (196)
Q Consensus 14 IqHP~-GrVEr~y~PV---------SAaEVM-------~~nPGHyVal~i~~p 49 (196)
|.|-+ ++..--||-. .+++|| ++||+|||-++--.+
T Consensus 43 iEf~d~~~~~~~yW~mwklPmf~~~d~~~Vl~El~~C~k~~p~~yVRligfD~ 95 (110)
T 1svd_M 43 IEHVEVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDN 95 (110)
T ss_dssp EEEECGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHHHHSTTSEEEEEEEET
T ss_pred EEeccCCccCCcEEeecccCCcCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 34432 4555556664 688888 589999998665333
No 9
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=20.34 E-value=81 Score=22.37 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=20.4
Q ss_pred cEEEEEcCCCeEEeeecCccHhHHhhcC
Q 029249 10 AALVIQHPNGRIERLYWPVTASEVMRMN 37 (196)
Q Consensus 10 a~VVIqHP~GrVEr~y~PVSAaEVM~~n 37 (196)
++|+|..|+|++-+|..| ++.+|+..|
T Consensus 42 V~livfs~~gk~~~~~s~-~~~~il~ry 68 (77)
T 1egw_A 42 IALIIFNSSNKLFQYAST-DMDKVLLKY 68 (77)
T ss_dssp EEEEEECTTCCEEEEESS-CHHHHHHHH
T ss_pred EEEEEECCCCCEeeCCCC-CHHHHHHHH
Confidence 457777899999988654 777887654
No 10
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=19.64 E-value=76 Score=23.35 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=21.1
Q ss_pred cEEEEEcCCCeEEeeecCccHhHHhhcC
Q 029249 10 AALVIQHPNGRIERLYWPVTASEVMRMN 37 (196)
Q Consensus 10 a~VVIqHP~GrVEr~y~PVSAaEVM~~n 37 (196)
++|+|..|+|++-+|.. -+..+|+..|
T Consensus 42 Valiifs~~gk~~~f~s-~~~~~il~rY 68 (90)
T 3p57_A 42 IALIIFNSSNKLFQYAS-TDMDKVLLKY 68 (90)
T ss_dssp EEEEEECTTCCEEEEES-SCHHHHHHHH
T ss_pred eEEEEECCCCCEEEeCC-CCHHHHHHHH
Confidence 56777899999988765 4788888765
Done!