Query 029249
Match_columns 196
No_of_seqs 108 out of 151
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 16:06:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029249.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029249hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tkea1 d.15.10.1 (A:1-62) Thr 59.6 2.8 0.0002 26.6 2.5 24 13-36 3-26 (62)
2 d1nyra2 d.15.10.1 (A:4-62) Thr 46.3 2.7 0.0002 26.6 0.7 24 13-36 2-25 (59)
3 d1rbli_ d.73.1.1 (I:) Ribulose 31.7 11 0.00082 27.0 2.2 22 28-49 65-93 (109)
4 d1svdm1 d.73.1.1 (M:3-110) Rib 29.4 13 0.00093 26.7 2.1 21 29-49 66-93 (108)
5 d1wdds_ d.73.1.1 (S:) Ribulose 26.5 15 0.0011 26.8 2.2 21 29-49 78-105 (122)
6 d1bxni_ d.73.1.1 (I:) Ribulose 26.4 15 0.0011 27.0 2.1 21 29-49 60-87 (129)
7 d1m2da_ c.47.1.11 (A:) Thiored 24.5 25 0.0018 23.5 2.9 28 1-34 54-81 (101)
8 d1egwa_ d.88.1.1 (A:) Myocyte 23.6 28 0.0021 22.8 2.9 27 10-37 42-68 (71)
9 d1bwvs_ d.73.1.1 (S:) Ribulose 19.5 26 0.0019 26.1 2.2 19 28-46 59-84 (138)
10 d1khda1 a.46.2.1 (A:12-80) Ant 17.0 15 0.0011 23.1 0.2 24 144-167 1-24 (69)
No 1
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}
Probab=59.64 E-value=2.8 Score=26.65 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.4
Q ss_pred EEEcCCCeEEeeecCccHhHHhhc
Q 029249 13 VIQHPNGRIERLYWPVTASEVMRM 36 (196)
Q Consensus 13 VIqHP~GrVEr~y~PVSAaEVM~~ 36 (196)
+|.-|||.+.+|.+.+|+.|+-..
T Consensus 3 ~ItlPDG~~~~~~~g~T~~diA~~ 26 (62)
T d1tkea1 3 VITLPDGSQRHYDHAVSPMDVALD 26 (62)
T ss_dssp EEECTTSCEEECSSCBCHHHHHHH
T ss_pred EEECCCCCEEEcCCCCCHHHHHHH
Confidence 466899999999999999999765
No 2
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=46.33 E-value=2.7 Score=26.58 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.8
Q ss_pred EEEcCCCeEEeeecCccHhHHhhc
Q 029249 13 VIQHPNGRIERLYWPVTASEVMRM 36 (196)
Q Consensus 13 VIqHP~GrVEr~y~PVSAaEVM~~ 36 (196)
.|..|||.+.+|..++|+.|+=..
T Consensus 2 ~ItlPDG~~~~~~~g~T~~diA~~ 25 (59)
T d1nyra2 2 NIQFPDGNKKAFDKGTTTEDIAQS 25 (59)
T ss_dssp BBCCTTSCCCBCCTTCCHHHHHHT
T ss_pred EEECCCCCEEEcCCCCCHHHHHHH
Confidence 356899999999999999999654
No 3
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=31.66 E-value=11 Score=26.99 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=16.2
Q ss_pred ccHhHHh-------hcCCCcEEEeeecCC
Q 029249 28 VTASEVM-------RMNPGHYVSLIIPLP 49 (196)
Q Consensus 28 VSAaEVM-------~~nPGHyVal~i~~p 49 (196)
-.+++|| ++||||||-++--.+
T Consensus 65 ~d~~~Vl~ele~c~~~~p~~YVRliG~D~ 93 (109)
T d1rbli_ 65 AAPQQVLDEVRECRSEYGDCYIRVAGFDN 93 (109)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHhCCcCEEEEEEEeC
Confidence 3577777 789999998665333
No 4
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=29.41 E-value=13 Score=26.69 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=15.4
Q ss_pred cHhHHh-------hcCCCcEEEeeecCC
Q 029249 29 TASEVM-------RMNPGHYVSLIIPLP 49 (196)
Q Consensus 29 SAaEVM-------~~nPGHyVal~i~~p 49 (196)
.+++|| ++||||||-++--.+
T Consensus 66 d~~~Vl~Ele~c~~~~p~~YVRliG~D~ 93 (108)
T d1svdm1 66 NVDNVLAEIEACRSAYPTHQVKLVAYDN 93 (108)
T ss_dssp CHHHHHHHHHHHHHHSTTSEEEEEEEET
T ss_pred cHHHHHHHHHHHHHHCCCCEEEEEEEcC
Confidence 467776 689999998665333
No 5
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=26.53 E-value=15 Score=26.80 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=16.2
Q ss_pred cHhHHh-------hcCCCcEEEeeecCC
Q 029249 29 TASEVM-------RMNPGHYVSLIIPLP 49 (196)
Q Consensus 29 SAaEVM-------~~nPGHyVal~i~~p 49 (196)
++++|| ++||+|||-++--.+
T Consensus 78 d~~~Vl~Ele~C~k~~p~~YVRligfD~ 105 (122)
T d1wdds_ 78 DATQVLKELEEAKKAYPDAFVRIIGFDN 105 (122)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHCCCceEEEEEEeC
Confidence 788887 789999998765333
No 6
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=26.39 E-value=15 Score=27.02 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=16.2
Q ss_pred cHhHHh-------hcCCCcEEEeeecCC
Q 029249 29 TASEVM-------RMNPGHYVSLIIPLP 49 (196)
Q Consensus 29 SAaEVM-------~~nPGHyVal~i~~p 49 (196)
.+++|| ++||||||-++--.+
T Consensus 60 d~~~Vl~ele~c~~e~p~~YVRliG~D~ 87 (129)
T d1bxni_ 60 DAAGILMEINNARNTFPNHYIRVTAFDS 87 (129)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEEEECT
T ss_pred CHHHHHHHHHHHHHHCCcCEEEEEEEeC
Confidence 578887 789999998765444
No 7
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
Probab=24.48 E-value=25 Score=23.48 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=18.1
Q ss_pred CCccccccccEEEEEcCCCeEEeeecCccHhHHh
Q 029249 1 MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVM 34 (196)
Q Consensus 1 MGNCqA~daa~VVIqHP~GrVEr~y~PVSAaEVM 34 (196)
||.|...-.+ +++|+| .+|.-|+..++-
T Consensus 54 lG~C~~gP~v---~i~P~~---~~Y~~v~~e~v~ 81 (101)
T d1m2da_ 54 MNASMMGPVV---VVYPDG---VWYGQVKPEDVD 81 (101)
T ss_dssp CSCGGGCSCE---EEETTT---EEECSCCGGGHH
T ss_pred CcccCCCceE---EEcCCc---cEEecCCHHHHH
Confidence 5777654443 348998 568888776553
No 8
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.58 E-value=28 Score=22.80 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=20.4
Q ss_pred cEEEEEcCCCeEEeeecCccHhHHhhcC
Q 029249 10 AALVIQHPNGRIERLYWPVTASEVMRMN 37 (196)
Q Consensus 10 a~VVIqHP~GrVEr~y~PVSAaEVM~~n 37 (196)
++|+|..|+|++-.|..| ++.+|+..+
T Consensus 42 valiv~s~~gk~~~f~s~-~~~~vl~ry 68 (71)
T d1egwa_ 42 IALIIFNSSNKLFQYAST-DMDKVLLKY 68 (71)
T ss_dssp EEEEEECTTCCEEEEESS-CHHHHHHHH
T ss_pred EEEEEEcCCCCEEEeeCC-CHHHHHHHH
Confidence 567778999999888766 677776543
No 9
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=19.50 E-value=26 Score=26.11 Aligned_cols=19 Identities=11% Similarity=0.387 Sum_probs=15.0
Q ss_pred ccHhHHh-------hcCCCcEEEeee
Q 029249 28 VTASEVM-------RMNPGHYVSLII 46 (196)
Q Consensus 28 VSAaEVM-------~~nPGHyVal~i 46 (196)
-.+++|| ++||+|||-++-
T Consensus 59 ~d~~~Vl~Ele~C~k~~p~~YVRliG 84 (138)
T d1bwvs_ 59 TDPAAVLFEINACRKARSNFYIKVVG 84 (138)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCcceEEEEE
Confidence 4677777 789999998655
No 10
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=16.96 E-value=15 Score=23.14 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=21.2
Q ss_pred eehhhHhhhhccceeccccccccc
Q 029249 144 IYLSTFKRIAKGILLTQSEFETCT 167 (196)
Q Consensus 144 ~w~~~~~~i~~~~~~~~~~~~~~~ 167 (196)
+|+|-|+++-.|--||++|...|-
T Consensus 1 t~~~il~kl~~g~~Ls~ee~~~~~ 24 (69)
T d1khda1 1 THQPILEKLFKSQSMTQEESHQLF 24 (69)
T ss_dssp CCHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHH
Confidence 599999999999999999987664
Done!