Query 029251
Match_columns 196
No_of_seqs 196 out of 1202
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:56:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05653 Mg_trans_NIPA: Magnes 99.8 2.8E-21 6E-26 167.4 9.8 183 2-194 6-196 (300)
2 PRK02971 4-amino-4-deoxy-L-ara 99.6 8.5E-15 1.8E-19 112.4 14.6 117 4-120 3-125 (129)
3 PRK15051 4-amino-4-deoxy-L-ara 99.4 4.8E-12 1E-16 94.7 13.9 106 6-117 4-109 (111)
4 KOG2922 Uncharacterized conser 99.4 1.3E-14 2.8E-19 125.1 -2.3 114 4-117 22-136 (335)
5 COG2510 Predicted membrane pro 99.2 9E-11 2E-15 89.4 10.6 115 3-117 3-139 (140)
6 PRK10452 multidrug efflux syst 99.2 1.6E-09 3.5E-14 82.2 14.0 100 6-119 5-105 (120)
7 PF10639 UPF0546: Uncharacteri 99.1 3.2E-10 6.9E-15 85.0 7.8 102 13-114 6-111 (113)
8 PRK09541 emrE multidrug efflux 99.0 1.1E-08 2.5E-13 76.4 14.0 100 6-119 5-105 (110)
9 TIGR03340 phn_DUF6 phosphonate 99.0 1.2E-08 2.6E-13 87.0 15.6 115 4-118 2-136 (281)
10 PF13536 EmrE: Multidrug resis 99.0 3.2E-09 7E-14 79.0 10.6 71 50-121 40-110 (113)
11 PF00893 Multi_Drug_Res: Small 98.9 1.7E-08 3.8E-13 73.1 9.8 88 7-108 5-93 (93)
12 COG2076 EmrE Membrane transpor 98.8 1.2E-07 2.6E-12 70.2 12.8 99 5-117 4-103 (106)
13 PRK10650 multidrug efflux syst 98.8 2.2E-07 4.7E-12 69.4 13.5 98 3-115 7-106 (109)
14 PRK11431 multidrug efflux syst 98.8 2.2E-07 4.7E-12 69.0 12.9 95 8-116 6-101 (105)
15 PRK10532 threonine and homoser 98.6 1.6E-06 3.4E-11 74.5 15.0 116 3-118 148-282 (293)
16 TIGR00950 2A78 Carboxylate/Ami 98.6 1.9E-06 4E-11 71.9 14.2 112 2-113 127-260 (260)
17 TIGR00950 2A78 Carboxylate/Ami 98.6 1.1E-06 2.4E-11 73.2 12.6 71 49-119 51-121 (260)
18 PRK11689 aromatic amino acid e 98.6 2.3E-06 4.9E-11 73.6 14.3 113 3-116 156-286 (295)
19 PRK15430 putative chlorampheni 98.5 6.6E-06 1.4E-10 70.8 16.5 115 2-117 7-145 (296)
20 TIGR00688 rarD rarD protein. T 98.5 1.1E-05 2.4E-10 67.6 16.0 113 4-117 3-142 (256)
21 PRK11453 O-acetylserine/cystei 98.4 2.7E-05 5.8E-10 67.0 17.9 113 6-118 7-133 (299)
22 PRK11272 putative DMT superfam 98.4 6.5E-06 1.4E-10 70.6 13.5 116 3-118 150-286 (292)
23 PF00892 EamA: EamA-like trans 98.4 7.5E-07 1.6E-11 65.3 6.6 68 49-116 58-125 (126)
24 PRK11453 O-acetylserine/cystei 98.4 1E-05 2.2E-10 69.6 14.7 117 2-118 142-288 (299)
25 PF06027 DUF914: Eukaryotic pr 98.4 2.1E-05 4.6E-10 69.4 16.6 67 52-118 86-152 (334)
26 PLN00411 nodulin MtN21 family 98.4 8.1E-06 1.8E-10 72.6 13.4 115 3-117 189-328 (358)
27 TIGR03340 phn_DUF6 phosphonate 98.3 3.9E-06 8.4E-11 71.6 9.6 112 4-115 145-281 (281)
28 COG0697 RhaT Permeases of the 98.3 1.8E-05 4E-10 65.9 13.0 74 49-122 74-148 (292)
29 TIGR00776 RhaT RhaT L-rhamnose 98.3 1E-05 2.3E-10 69.6 11.4 66 54-119 68-138 (290)
30 PRK11689 aromatic amino acid e 98.2 0.00014 3.1E-09 62.5 16.8 114 5-118 6-138 (295)
31 TIGR00817 tpt Tpt phosphate/ph 98.1 7.4E-05 1.6E-09 64.2 12.4 66 50-116 71-136 (302)
32 PRK11272 putative DMT superfam 98.1 8.7E-05 1.9E-09 63.6 12.6 68 50-118 74-142 (292)
33 COG0697 RhaT Permeases of the 98.0 0.00039 8.5E-09 57.9 15.5 116 2-118 153-288 (292)
34 PF04142 Nuc_sug_transp: Nucle 98.0 0.00055 1.2E-08 57.9 16.0 72 47-118 19-90 (244)
35 PTZ00343 triose or hexose phos 98.0 0.00015 3.2E-09 64.2 13.0 63 55-117 124-186 (350)
36 PRK15430 putative chlorampheni 97.9 0.00042 9E-09 59.6 14.2 63 54-116 222-284 (296)
37 PLN00411 nodulin MtN21 family 97.9 0.0011 2.4E-08 59.1 16.9 60 58-117 91-156 (358)
38 TIGR00776 RhaT RhaT L-rhamnose 97.9 0.00033 7.1E-09 60.4 12.5 113 2-117 151-288 (290)
39 TIGR00817 tpt Tpt phosphate/ph 97.7 0.00052 1.1E-08 58.9 12.0 116 2-117 144-293 (302)
40 COG5006 rhtA Threonine/homoser 97.7 0.0011 2.3E-08 56.4 12.9 113 4-116 149-281 (292)
41 PF08449 UAA: UAA transporter 97.7 0.0012 2.6E-08 57.0 13.2 72 48-119 67-138 (303)
42 KOG3912 Predicted integral mem 97.4 0.00046 1E-08 59.6 6.3 71 48-118 89-159 (372)
43 PRK10532 threonine and homoser 97.3 0.031 6.8E-07 47.9 17.0 109 2-117 11-137 (293)
44 PF06800 Sugar_transport: Suga 97.3 0.0074 1.6E-07 51.8 12.9 73 50-122 50-127 (269)
45 KOG4831 Unnamed protein [Funct 97.2 0.0017 3.6E-08 48.2 6.7 99 15-114 15-122 (125)
46 PTZ00343 triose or hexose phos 97.0 0.019 4.2E-07 50.7 13.5 115 2-116 193-347 (350)
47 KOG2765 Predicted membrane pro 96.8 0.008 1.7E-07 53.7 8.6 66 58-123 172-237 (416)
48 PF03151 TPT: Triose-phosphate 96.8 0.058 1.3E-06 41.1 12.5 54 61-114 97-150 (153)
49 PRK13499 rhamnose-proton sympo 96.7 0.034 7.3E-07 49.5 12.3 114 2-117 6-153 (345)
50 PF06027 DUF914: Eukaryotic pr 96.7 0.034 7.3E-07 49.2 12.1 119 2-120 167-308 (334)
51 KOG2234 Predicted UDP-galactos 96.7 0.13 2.8E-06 45.6 15.3 69 48-116 95-163 (345)
52 KOG4510 Permease of the drug/m 96.6 0.0036 7.9E-08 53.8 5.0 65 54-118 106-170 (346)
53 TIGR00803 nst UDP-galactose tr 96.6 0.02 4.4E-07 47.0 9.4 112 2-113 84-220 (222)
54 KOG4314 Predicted carbohydrate 96.2 0.023 5.1E-07 47.0 7.4 63 60-122 68-130 (290)
55 COG2962 RarD Predicted permeas 95.9 0.068 1.5E-06 46.3 9.3 77 39-116 62-143 (293)
56 PF08449 UAA: UAA transporter 95.2 0.75 1.6E-05 39.6 13.5 115 3-117 154-297 (303)
57 PRK02237 hypothetical protein; 95.1 0.21 4.6E-06 37.1 8.3 73 47-119 33-107 (109)
58 PF06800 Sugar_transport: Suga 94.9 0.075 1.6E-06 45.7 6.2 66 49-114 199-268 (269)
59 PF02694 UPF0060: Uncharacteri 94.8 0.23 5.1E-06 36.8 7.7 73 47-119 32-105 (107)
60 PF04142 Nuc_sug_transp: Nucle 92.3 2.7 5.9E-05 35.4 11.2 105 2-107 113-243 (244)
61 COG1742 Uncharacterized conser 91.5 1.1 2.4E-05 33.1 6.8 73 48-120 33-107 (109)
62 COG4975 GlcU Putative glucose 90.0 0.11 2.3E-06 44.4 0.4 68 52-119 66-138 (288)
63 PF04657 DUF606: Protein of un 89.9 2.1 4.6E-05 32.9 7.6 66 49-114 68-138 (138)
64 PF05653 Mg_trans_NIPA: Magnes 89.2 1.4 3.1E-05 38.3 6.9 61 62-122 230-297 (300)
65 COG5006 rhtA Threonine/homoser 89.2 14 0.0003 31.9 15.8 140 4-155 13-169 (292)
66 KOG2765 Predicted membrane pro 89.2 9.6 0.00021 34.5 12.0 120 2-121 246-394 (416)
67 KOG1441 Glucose-6-phosphate/ph 88.1 0.09 1.9E-06 46.2 -1.4 64 54-117 92-155 (316)
68 COG2962 RarD Predicted permeas 87.8 3.2 7E-05 36.1 7.9 63 55-117 221-283 (293)
69 COG3169 Uncharacterized protei 84.7 2.5 5.5E-05 31.1 4.9 37 79-115 77-113 (116)
70 TIGR00688 rarD rarD protein. T 84.1 20 0.00044 29.6 10.9 85 7-92 150-255 (256)
71 PF04342 DUF486: Protein of un 82.4 1.8 4E-05 32.1 3.4 37 79-115 70-106 (108)
72 KOG1583 UDP-N-acetylglucosamin 72.9 15 0.00032 32.2 6.7 68 49-116 68-136 (330)
73 COG4975 GlcU Putative glucose 72.7 1.3 2.8E-05 38.0 0.3 63 54-116 218-284 (288)
74 COG3238 Uncharacterized protei 71.6 48 0.001 26.1 11.3 39 78-116 103-145 (150)
75 KOG1580 UDP-galactose transpor 70.5 6.8 0.00015 33.6 4.1 35 80-114 276-310 (337)
76 PF06379 RhaT: L-rhamnose-prot 69.8 59 0.0013 29.1 9.9 64 54-117 82-153 (344)
77 KOG1581 UDP-galactose transpor 66.7 88 0.0019 27.7 10.2 67 50-116 88-154 (327)
78 KOG2766 Predicted membrane pro 64.5 0.87 1.9E-05 39.3 -2.4 56 61-116 94-149 (336)
79 PRK13499 rhamnose-proton sympo 58.3 1.4E+02 0.003 26.7 12.8 66 52-118 267-342 (345)
80 KOG1443 Predicted integral mem 51.8 6.3 0.00014 34.8 0.7 60 60-119 99-158 (349)
81 KOG1442 GDP-fucose transporter 50.8 12 0.00027 32.7 2.3 59 55-113 112-170 (347)
82 KOG2234 Predicted UDP-galactos 46.4 2.2E+02 0.0048 25.5 13.4 71 49-119 254-324 (345)
83 KOG1583 UDP-N-acetylglucosamin 46.1 15 0.00033 32.1 2.1 34 83-116 280-313 (330)
84 COG3752 Steroid 5-alpha reduct 40.3 1.6E+02 0.0036 25.3 7.4 68 42-110 11-78 (272)
85 KOG1441 Glucose-6-phosphate/ph 34.3 3.2E+02 0.007 24.1 8.6 32 86-117 276-307 (316)
86 smart00665 B561 Cytochrome b-5 31.3 2.2E+02 0.0047 21.0 10.9 13 103-115 43-55 (129)
87 COG3114 CcmD Heme exporter pro 29.9 1.1E+02 0.0024 20.7 3.8 27 2-28 20-46 (67)
88 KOG1580 UDP-galactose transpor 29.4 67 0.0015 27.7 3.4 70 49-118 89-158 (337)
89 TIGR00997 ispZ intracellular s 24.3 3.8E+02 0.0082 21.6 7.7 23 91-113 41-64 (178)
90 KOG1581 UDP-galactose transpor 23.6 1.7E+02 0.0037 25.9 4.9 47 67-114 264-310 (327)
91 PF03188 Cytochrom_B561: Eukar 21.9 3.3E+02 0.0071 20.0 9.3 14 103-116 44-57 (137)
92 KOG4510 Permease of the drug/m 20.1 1.1E+02 0.0023 27.0 2.9 59 58-116 266-324 (346)
No 1
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.85 E-value=2.8e-21 Score=167.38 Aligned_cols=183 Identities=22% Similarity=0.358 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhhhh
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGC 80 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~-~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~ 80 (196)
++|+.++++++.++++|..+||+++.+.++.+.+. .....|+++|.||.|+.++++|.++++.|+.++|.+++||+.+.
T Consensus 6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~ 85 (300)
T PF05653_consen 6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPLGAL 85 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhh
Confidence 57999999999999999999999998877633221 23468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc-CCCCCCCCcch-h---hh-HHHHHHHHHHHH-HHHHHHHHHh
Q 029251 81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA-GGEEQEPSSIS-I---FQ-LPWLAFVVSILF-VLLNGWLRIC 153 (196)
Q Consensus 81 ~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~-~~~~~~~~~~~-~---~~-~~~~~~~~~~~~-~~~~~~~~~~ 153 (196)
+++++++++.+++|||+++++|.|+.+++.|..++.. ++++++..+.+ . +. ...........+ .+...+ ...
T Consensus 86 ~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~-~~~ 164 (300)
T PF05653_consen 86 SLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIF-FIK 164 (300)
T ss_pred hhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHH-hhc
Confidence 9999999999999999999999999999999886542 33332222221 1 11 111111111111 111111 112
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029251 154 KHQRREQEMIEFEVVEEIIYGLESGILFGYYFLLDKIYAKV 194 (196)
Q Consensus 154 ~~~r~~~~~~~~~~~~a~~~G~aaG~~fg~~av~~k~~~~~ 194 (196)
+|.+++ +-..|...+++..+++.+++|.++..
T Consensus 165 ~r~g~~---------~i~vyi~i~sl~Gs~tvl~~K~i~~~ 196 (300)
T PF05653_consen 165 PRYGRR---------NILVYISICSLIGSFTVLSAKAISIL 196 (300)
T ss_pred chhccc---------ceEEEEEEeccccchhhhHHHHHHHH
Confidence 111111 13557778889999999999988753
No 2
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.64 E-value=8.5e-15 Score=112.44 Aligned_cols=117 Identities=18% Similarity=0.159 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHhccCchhHHHhhhh
Q 029251 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKV--IRAYAVNK--AWVIGFLMDIFGALLMLRALSQAPVSVIQPVSG 79 (196)
Q Consensus 4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~--~~~~l~~~--~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~ 79 (196)
++++.+.+..+.+.||.+.|+++++.++.+.+... ....+.|| ..+.|..++++++.+|..++++.|+|+++|+.+
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~s 82 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLS 82 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 56778889999999999999999988765432221 22234566 678999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH--HhCCcCchHHHHHHHHHHHHHhhhccCCC
Q 029251 80 CGLAILSIFSHF--YLKEVMNAVDWMGITLAGIGTIGVGAGGE 120 (196)
Q Consensus 80 ~~~v~~~~~~~~--~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~ 120 (196)
..++++.+.+.. ++||++|.++|+|+.++++|+++++.+++
T Consensus 83 l~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 83 LSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 999999888885 89999999999999999999999986544
No 3
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=99.44 E-value=4.8e-12 Score=94.72 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHH
Q 029251 6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAIL 85 (196)
Q Consensus 6 ~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~ 85 (196)
..-+.+..+...||...|++++..++-..+.+ .+ .+...+..++++++.++..++++.|++++||+.+++++.+
T Consensus 4 ~~l~~ai~~ev~g~~~lK~s~~~~~~~~~~~~----~l--~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~ 77 (111)
T PRK15051 4 LTLVFASLLSVAGQLCQKQATRPVAIGKRRKH----IV--LWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWV 77 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhhhH----HH--HHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 44567788889999999998766532110100 00 0113445789999999999999999999999999999999
Q ss_pred HHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 86 SIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 86 ~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
.+++.+++||++|.++|+|+.+++.|+++++.
T Consensus 78 ~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 78 TLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998874
No 4
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.3e-14 Score=125.07 Aligned_cols=114 Identities=23% Similarity=0.348 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCchh-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHH
Q 029251 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFK-LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGL 82 (196)
Q Consensus 4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~-~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~ 82 (196)
+..+++.++...+.+..+||++..+.++.+.. ...-..|++.|.||.|++.+++|..+++.|+.++|.+++.|+.++++
T Consensus 22 G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsv 101 (335)
T KOG2922|consen 22 GLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSV 101 (335)
T ss_pred eeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHH
Confidence 45677888888889999999999876642210 01123577899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 83 v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
+++++++.++++|+++..+.+|+.++++|-.++..
T Consensus 102 i~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 102 IISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 99999999999999999999999999999776653
No 5
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.24 E-value=9e-11 Score=89.36 Aligned_cols=115 Identities=23% Similarity=0.357 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCC-chhHHHHHH--------HHh---------hHH-H---HHHHHHHHHHHH
Q 029251 3 ELICLTLAATAGNNIGKVLQKKGTVILPPL-SFKLKVIRA--------YAV---------NKA-W---VIGFLMDIFGAL 60 (196)
Q Consensus 3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~-~~~~~~~~~--------~l~---------~~~-w---~~G~~~~~~g~~ 60 (196)
-.+..++.+|+..++....-|.+-++.++. ..-.+.... +.. +|+ | ..+.+.-+++..
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 356789999999999999999998876542 111111100 000 111 2 234466788889
Q ss_pred HHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 61 ~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
+++.|++.++.|.+.|+.+++++++.++|..++|||+|..+|+|+.++++|+++++.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999999998764
No 6
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=99.16 E-value=1.6e-09 Score=82.19 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHH
Q 029251 6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAI 84 (196)
Q Consensus 6 ~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~ 84 (196)
+.-+.|..+...++...|.+....+ ..+++....++++++.++..++++.|++++||+- +.+.+.
T Consensus 5 l~L~~Ai~~Ev~~t~~LK~s~g~~~--------------~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~ 70 (120)
T PRK10452 5 ILLALAIATEITGTLSMKWASVSEG--------------NGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILF 70 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCC--------------cHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 3445667778888888887753221 1235678889999999999999999999999995 799999
Q ss_pred HHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251 85 LSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (196)
Q Consensus 85 ~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~ 119 (196)
+.+.+.+++||++|..+++|+.+++.|++.+...+
T Consensus 71 ~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 71 ITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999886443
No 7
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=99.11 E-value=3.2e-10 Score=85.02 Aligned_cols=102 Identities=21% Similarity=0.336 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcccCCCCchh---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHH
Q 029251 13 AGNNIGKVLQKKGTVILPPLSFK---LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIF 88 (196)
Q Consensus 13 ~~~~~g~~lqk~~~~~~~~~~~~---~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~ 88 (196)
.+-+..+-+-||++...++...+ ......+++||.++.++.++-.|.+.++..|+..|+|++.|+. ++++++|++.
T Consensus 6 ~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~ 85 (113)
T PF10639_consen 6 ILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALT 85 (113)
T ss_pred HHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHH
Confidence 34455677888888766543322 3445568889999999999999999999999999999999997 9999999999
Q ss_pred HHHHhCCcCchHHHHHHHHHHHHHhh
Q 029251 89 SHFYLKEVMNAVDWMGITLAGIGTIG 114 (196)
Q Consensus 89 ~~~~l~e~l~~~~~~Gi~li~~Gv~~ 114 (196)
+.++.+|..+++.|+|+.+++.|+.+
T Consensus 86 g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 86 GWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHhcCcccchhHHHHHHHHHcCeee
Confidence 98888888899999999999999865
No 8
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=99.05 E-value=1.1e-08 Score=76.43 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhh-hhhHHHH
Q 029251 6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLAI 84 (196)
Q Consensus 6 ~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl-~~~~~v~ 84 (196)
..-+.+..+...++...|.+..-. + ..+.+....++++++.++..++++.|++++||+ ...+.+.
T Consensus 5 l~L~~a~~~Ev~~~~~lK~s~gf~-~-------------~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~ 70 (110)
T PRK09541 5 IYLGGAILAEVIGTTLMKFSEGFT-R-------------LWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL 70 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-c-------------hhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 344566778888888888774221 1 123467788999999999999999999999999 5699999
Q ss_pred HHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251 85 LSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (196)
Q Consensus 85 ~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~ 119 (196)
+.+.+.+++||++|..+++|+.+++.|++.+...+
T Consensus 71 ~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999986443
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.03 E-value=1.2e-08 Score=87.03 Aligned_cols=115 Identities=17% Similarity=0.284 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCch--h-------HHHHHHH-----Hh--hHH-H---HHHHHHHHHHHHHHH
Q 029251 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF--K-------LKVIRAY-----AV--NKA-W---VIGFLMDIFGALLML 63 (196)
Q Consensus 4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~--~-------~~~~~~~-----l~--~~~-w---~~G~~~~~~g~~~~~ 63 (196)
++.+.+.++++++..+.+.|+..++.+.... . .+..... .+ ++. | ..+.........++.
T Consensus 2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999977766443211 0 0111000 11 111 1 234445667778899
Q ss_pred HHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 64 ~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
.++++.|.+.++|+..++++++.+++.+++||++++++|+|+.++..|+.++..+
T Consensus 82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999988653
No 10
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.03 E-value=3.2e-09 Score=79.04 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCCC
Q 029251 50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEE 121 (196)
Q Consensus 50 ~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~~ 121 (196)
.|.+....++.+++.++++.| +.+.++..++++++.+++.+++|||+++++|.|+.++.+|++++..++.+
T Consensus 40 ~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 40 AGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 355555688999999999999 69999999999999999999999999999999999999999999876544
No 11
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=98.90 E-value=1.7e-08 Score=73.09 Aligned_cols=88 Identities=20% Similarity=0.298 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHH
Q 029251 7 LTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAIL 85 (196)
Q Consensus 7 lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~ 85 (196)
.-+.|..+...++...|+...... ..++.....++.+++.++..++++.|++++||+. +.+.+.+
T Consensus 5 ~L~~a~~~ev~~~~~lK~s~g~~~--------------~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~ 70 (93)
T PF00893_consen 5 FLLLAILFEVVGTIALKASHGFTQ--------------LIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGV 70 (93)
T ss_dssp HHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--------------hhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 334566678889998888432111 1233455668999999999999999999999996 5999999
Q ss_pred HHHHHHHhCCcCchHHHHHHHHH
Q 029251 86 SIFSHFYLKEVMNAVDWMGITLA 108 (196)
Q Consensus 86 ~~~~~~~l~e~l~~~~~~Gi~li 108 (196)
.+.+.+++||++|..+|.|+.++
T Consensus 71 ~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 71 TLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHhheeeC
Confidence 99999999999999999999875
No 12
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.2e-07 Score=70.21 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhh-hhhHHH
Q 029251 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLA 83 (196)
Q Consensus 5 i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl-~~~~~v 83 (196)
...-++|..+.-+++...|.+..-.+ ..+.+...+++.+++.+.-.+++..|++++|++ ...+.+
T Consensus 4 w~~L~lAi~~EV~~~~~lK~s~gf~~--------------~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v 69 (106)
T COG2076 4 WIYLLLAILLEVVGTTLLKYSDGFTR--------------LWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIV 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc--------------cchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 34455667777788888888753221 123456778899999999999999999999999 579999
Q ss_pred HHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 84 ~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
.+++.+.+++||+++..+++|+.+++.|++.+-.
T Consensus 70 ~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 70 GTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999998753
No 13
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=98.82 E-value=2.2e-07 Score=69.41 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hh
Q 029251 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKA-WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GC 80 (196)
Q Consensus 3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~-w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~ 80 (196)
+....-++|..+...++...|++..- ++|. ...-..++.+++.+.-.+++..|++++|++- ..
T Consensus 7 ~~~~~L~~Ai~~Ev~~t~~Lk~s~gf---------------~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~Gi 71 (109)
T PRK10650 7 IHAAWLALAIVLEIVANIFLKFSDGF---------------RRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGF 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---------------cchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Confidence 44555567788888888888876421 1122 2455677888999999999999999999995 69
Q ss_pred HHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhh
Q 029251 81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (196)
Q Consensus 81 ~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l 115 (196)
+.+.+.+.+.+++||++|..+++|+.+++.|++.+
T Consensus 72 G~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 72 GIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999876
No 14
>PRK11431 multidrug efflux system protein; Provisional
Probab=98.80 E-value=2.2e-07 Score=68.99 Aligned_cols=95 Identities=20% Similarity=0.120 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHH
Q 029251 8 TLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILS 86 (196)
Q Consensus 8 al~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~ 86 (196)
-+.|..+...++...|++..-. +..++.....++.+++.+.-.+++..|++++|++- ..+.+.+.
T Consensus 6 L~~Ai~~Ev~~t~~Lk~s~gf~--------------~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~ 71 (105)
T PRK11431 6 LVIAGLLEVVWAVGLKYTHGFS--------------RLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAA 71 (105)
T ss_pred HHHHHHHHHHHHHHHHhhhCCc--------------cHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHH
Confidence 3456777788888888753211 11234566788999999999999999999999995 59999999
Q ss_pred HHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 87 IFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 87 ~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
+.+.+++||++|..+++|+.+++.|++.+.
T Consensus 72 lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 72 ITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999874
No 15
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.63 E-value=1.6e-06 Score=74.52 Aligned_cols=116 Identities=15% Similarity=0.177 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHH-HH-------HHHH------hhHH-----HHHHHHHHHHHHHHHH
Q 029251 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK-VI-------RAYA------VNKA-----WVIGFLMDIFGALLML 63 (196)
Q Consensus 3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~-~~-------~~~l------~~~~-----w~~G~~~~~~g~~~~~ 63 (196)
.+..+.+.++++++...+..|+..++.++...... .. .... .++. ...|..+.++++.+|.
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~ 227 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEM 227 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999998887665443221000 00 0000 0111 3566777788889999
Q ss_pred HHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 64 ~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
.++++.|-+.+.++..++++++.+++.+++||+++..+++|..+++.|++.....
T Consensus 228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999987643
No 16
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.59 E-value=1.9e-06 Score=71.85 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc--hh-HHH------H--HHHHh-------hHHH----HHHHHHHHHHH
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS--FK-LKV------I--RAYAV-------NKAW----VIGFLMDIFGA 59 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~--~~-~~~------~--~~~l~-------~~~w----~~G~~~~~~g~ 59 (196)
+.++.+++.++++.+..+..+|+..++.+... .. ... . ..... ...| ..|.....+++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999887655221 10 000 0 00111 1112 24555667889
Q ss_pred HHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHh
Q 029251 60 LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113 (196)
Q Consensus 60 ~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~ 113 (196)
.++..++++.|.+.+..+..++++++.+++.+++||++++.+|.|+.++..|+.
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999863
No 17
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.58 E-value=1.1e-06 Score=73.25 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251 49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (196)
Q Consensus 49 ~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~ 119 (196)
..|.....+...+++.++++.|.+.+.++..+.++++++++.+++|||+++++|+|+.+..+|+.++..++
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~ 121 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG 121 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC
Confidence 46666778888999999999999999999999999999999999999999999999999999999887443
No 18
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.57 E-value=2.3e-06 Score=73.59 Aligned_cols=113 Identities=9% Similarity=0.018 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh-----HHHHHH-HHh-------hHH-H----HHHHHHHHHHHHHHHH
Q 029251 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFK-----LKVIRA-YAV-------NKA-W----VIGFLMDIFGALLMLR 64 (196)
Q Consensus 3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~-----~~~~~~-~l~-------~~~-w----~~G~~~~~~g~~~~~~ 64 (196)
.+..+.+.++.+.+..+++.||..++.++.... .-.... ... ++. | ..| ...++++.+|..
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~~ 234 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWNV 234 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 367889999999999999999987654432210 000000 000 111 2 222 245667889999
Q ss_pred HhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 65 aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
++++.|.+.+.++..++++++.+++.+++||+++..+++|..++..|+.+.-
T Consensus 235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 9999999999999999999999999999999999999999999999988764
No 19
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.54 E-value=6.6e-06 Score=70.77 Aligned_cols=115 Identities=14% Similarity=0.043 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch-------hHHHHH-------------HHHhhHHH----HHHHHHHHH
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-------KLKVIR-------------AYAVNKAW----VIGFLMDIF 57 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~-------~~~~~~-------------~~l~~~~w----~~G~~~~~~ 57 (196)
..++...+.++.+.+.....-|.. .+.++... +..... +..++++. ..+......
T Consensus 7 ~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGG 85 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 357778888888888887777764 34443221 110000 00111222 255666777
Q ss_pred HHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 58 g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
...+++.++++.|.+.+.-+..+.++++.+++.+++|||+++++|.|+.+..+|+.++..
T Consensus 86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 86 NWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999998763
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.48 E-value=1.1e-05 Score=67.60 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCch-------hHHHHHH-------------HHh---hHH-H---HHHHHHHH
Q 029251 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-------KLKVIRA-------------YAV---NKA-W---VIGFLMDI 56 (196)
Q Consensus 4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~-------~~~~~~~-------------~l~---~~~-w---~~G~~~~~ 56 (196)
++...+.++.+.+......|.. .+.++.+. +...... ..+ +.. + .....+..
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 81 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIG 81 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 5677888888888888888873 34543321 1101000 011 111 1 12233466
Q ss_pred HHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 57 ~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
....+++.++++.|.+.+.-+..+.++++++++.+++|||+++++|.|+.+...|++++..
T Consensus 82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999998754
No 21
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.45 E-value=2.7e-05 Score=67.03 Aligned_cols=113 Identities=18% Similarity=0.236 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCch-hHHHH------HHHHh--hHHH--H--HHHHHHHHHHHHHHHHhcc-Cch
Q 029251 6 CLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKVI------RAYAV--NKAW--V--IGFLMDIFGALLMLRALSQ-APV 71 (196)
Q Consensus 6 ~lal~aa~~~~~g~~lqk~~~~~~~~~~~-~~~~~------~~~l~--~~~w--~--~G~~~~~~g~~~~~~aL~~-~pl 71 (196)
...+.++++-+......|...++.++... ..++. ..+.+ +.+| . .|.......+.+++.++++ .|.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a 86 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA 86 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 44667777777777888877766665432 11211 11111 1111 1 2332233344566778887 588
Q ss_pred hHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 72 SVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 72 svv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
+.+.-+..+.++++.+++.+++|||+++++|+|+.+..+|+.++..+
T Consensus 87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 99999999999999999999999999999999999999999988743
No 22
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.42 E-value=6.5e-06 Score=70.58 Aligned_cols=116 Identities=11% Similarity=0.124 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCc--h----hHHHH--HHHH------h--hH-HH----HHHHHHHHHHHHH
Q 029251 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS--F----KLKVI--RAYA------V--NK-AW----VIGFLMDIFGALL 61 (196)
Q Consensus 3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~--~----~~~~~--~~~l------~--~~-~w----~~G~~~~~~g~~~ 61 (196)
.+..+++.++++++..+..+|+..++.+... + +.... .... . ++ .| ..|....++++.+
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l 229 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISA 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998654322110 0 00000 0000 0 11 12 2445556678889
Q ss_pred HHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 62 ~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
|..++++.|.+.+..+..++++++++++.+++||++|..+++|..++..|+.++..+
T Consensus 230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988653
No 23
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.42 E-value=7.5e-07 Score=65.35 Aligned_cols=68 Identities=22% Similarity=0.290 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 49 ~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
..|.+....+..++..++++.|.+.+.++..++++++.+++..++||+++.++|+|+.+++.|+.++.
T Consensus 58 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 58 FLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35555568889999999999999999999999999999999999999999999999999999998764
No 24
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.42 E-value=1e-05 Score=69.62 Aligned_cols=117 Identities=17% Similarity=0.122 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc---hh--------HHHH-HHHHh-------------hHH-H----HHH
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS---FK--------LKVI-RAYAV-------------NKA-W----VIG 51 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~---~~--------~~~~-~~~l~-------------~~~-w----~~G 51 (196)
|.+..+++.++++.+...+++|+..++.++.. .. .+.. ..... ++. | ..|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 46889999999999999999998754433211 00 0111 00000 111 2 345
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 52 FLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 52 ~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
....++++.+|..++++.+-+.+.++..++++++.+++.+++||+++..+|+|..+++.|+.+...+
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 5566778889999999999999999999999999999999999999999999999999999876543
No 25
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.41 E-value=2.1e-05 Score=69.40 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 52 FLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 52 ~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
.++|..+--+.+.|+++-+++-+|-+...+.++++++|.+++|||.+..+++|+.+++.|+.++..+
T Consensus 86 a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 86 ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 4578999999999999999999999999999999999999999999999999999999999987644
No 26
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.38 E-value=8.1e-06 Score=72.61 Aligned_cols=115 Identities=11% Similarity=0.091 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCC-ch--------hHHH-HHHHHhh----HHH-------HHHH----HHHHH
Q 029251 3 ELICLTLAATAGNNIGKVLQKKGTVILPPL-SF--------KLKV-IRAYAVN----KAW-------VIGF----LMDIF 57 (196)
Q Consensus 3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~-~~--------~~~~-~~~~l~~----~~w-------~~G~----~~~~~ 57 (196)
++..+.+.++++.++.+++||+..++.++. .. .... ....... +.| .... +.-.+
T Consensus 189 lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~l 268 (358)
T PLN00411 189 IGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSV 268 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHH
Confidence 478899999999999999999987766542 10 0000 0011111 011 1111 12234
Q ss_pred HHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 58 g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
++.+|..++++.+-+.+..+.-++++++++++..++||+++..+++|.+++..|+.+...
T Consensus 269 ay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 269 YYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 777899999999999999999999999999999999999999999999999999998764
No 27
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.32 E-value=3.9e-06 Score=71.56 Aligned_cols=112 Identities=19% Similarity=0.282 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCc----h-h-------HHHHHHHH---------hhHHH----HHHHHHHHHH
Q 029251 4 LICLTLAATAGNNIGKVLQKKGTVILPPLS----F-K-------LKVIRAYA---------VNKAW----VIGFLMDIFG 58 (196)
Q Consensus 4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~----~-~-------~~~~~~~l---------~~~~w----~~G~~~~~~g 58 (196)
++...+.++++++...++.|+..++.++.. . . .+...-.. .++.+ ..+.....++
T Consensus 145 g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~ 224 (281)
T TIGR03340 145 AYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGA 224 (281)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHH
Confidence 455788899999999988887654443211 0 0 11110000 01111 3445556778
Q ss_pred HHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhh
Q 029251 59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (196)
Q Consensus 59 ~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l 115 (196)
+.+|..++++.|.+.+.++..++++++.+++.+++||+++..+|+|..++..|+.++
T Consensus 225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 889999999999999999999999999999999999999999999999999998763
No 28
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.30 E-value=1.8e-05 Score=65.90 Aligned_cols=74 Identities=23% Similarity=0.270 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHH-HHhCCcCchHHHHHHHHHHHHHhhhccCCCCC
Q 029251 49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH-FYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQ 122 (196)
Q Consensus 49 ~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~-~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~~~ 122 (196)
..+......+..+++.++++.|.+..+++..++++++.+++. +++|||+++++|.|+.+...|++++..++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 466777788889999999999999999999999999999997 77799999999999999999999998765543
No 29
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.28 E-value=1e-05 Score=69.64 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhccCchhHHHhhhh-hHHHHHHHHHHHHhCCcCchHH----HHHHHHHHHHHhhhccCC
Q 029251 54 MDIFGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVD----WMGITLAGIGTIGVGAGG 119 (196)
Q Consensus 54 ~~~~g~~~~~~aL~~~plsvv~pl~~-~~~v~~~~~~~~~l~e~l~~~~----~~Gi~li~~Gv~~l~~~~ 119 (196)
+...|..+++.+.++..+++.+|+.. +.++++.+.+.+++||+.++++ .+|+.++++|+++++..+
T Consensus 68 ~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 68 FWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 37888899999999999999999987 9999999999999999999999 899999999999887654
No 30
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.20 E-value=0.00014 Score=62.46 Aligned_cols=114 Identities=16% Similarity=0.030 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCchh-HHH------HHHHH-----hh--HH-HHHHHHHHHHHHHHHHHHhc--
Q 029251 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFK-LKV------IRAYA-----VN--KA-WVIGFLMDIFGALLMLRALS-- 67 (196)
Q Consensus 5 i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~-~~~------~~~~l-----~~--~~-w~~G~~~~~~g~~~~~~aL~-- 67 (196)
+...+.+.++-+......|.+.++.++.... .+. ..... ++ ++ ...+.........+++.+++
T Consensus 6 ~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 85 (295)
T PRK11689 6 TLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGYA 85 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4566677777777778888888887765421 111 10010 11 11 12333333334445555554
Q ss_pred --cCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 68 --QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 68 --~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
..|.+.+.-+..+.++++.+++.+++|||+++++|.|+.+..+|+.++..+
T Consensus 86 ~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 86 NTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred hccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 346666777889999999999999999999999999999999999988754
No 31
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.07 E-value=7.4e-05 Score=64.18 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 50 ~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
.|.. ......++..++++.+.+..+-+.++.++++++++.+++|||+++++|.|+.+++.|+.+.+
T Consensus 71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 4554 57778899999999999999999999999999999999999999999999999999998764
No 32
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.06 E-value=8.7e-05 Score=63.63 Aligned_cols=68 Identities=21% Similarity=0.346 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHh-ccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 50 IGFLMDIFGALLMLRAL-SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 50 ~G~~~~~~g~~~~~~aL-~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
.|......++.++..+. +..|.+.+..+..+.++++.+++.+ +|||+++++|+|+.+..+|+.++..+
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 45544455667778888 9999999999999999999999975 79999999999999999999888643
No 33
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.02 E-value=0.00039 Score=57.85 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhH-------HHHH--HHHh------hH-HH----HHHHHHHHHHHHH
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-------KVIR--AYAV------NK-AW----VIGFLMDIFGALL 61 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~-------~~~~--~~l~------~~-~w----~~G~~~~~~g~~~ 61 (196)
+.++.+.+.++.+.+..+..+|+-. +.+...... .... .... +. .| ..|....+++..+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999776 322211110 0000 0000 00 01 3455555678899
Q ss_pred HHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 62 ~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
+..+++..|.+.+.++..++++++..++..++||+++..+++|+.+++.|+.+...+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999988654
No 34
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.00 E-value=0.00055 Score=57.87 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 47 AWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 47 ~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
+.....++|.+.-.+++.++++.|.+.-|-+..+.++++++++.+++|+|+++++|.++.+.++|+.+...+
T Consensus 19 ~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~ 90 (244)
T PF04142_consen 19 KLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLS 90 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecC
Confidence 346778899999999999999999999999999999999999999999999999999999999999987643
No 35
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.99 E-value=0.00015 Score=64.16 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 55 DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 55 ~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
+..+......++++.|.|.+|-+.+++++++++++.+++|||++++++.++.+++.|+.+.+.
T Consensus 124 ~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 124 HLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 344455566999999999999999999999999999999999999999999999999999874
No 36
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.92 E-value=0.00042 Score=59.59 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 54 ~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
...++..++..++++.|-+.+.++.-.+++++.+++.+++||+++..+++|..+++.|+.++.
T Consensus 222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344678899999999999999999999999999999999999999999999999988877654
No 37
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.90 E-value=0.0011 Score=59.06 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=55.0
Q ss_pred HHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHH------hCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFY------LKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 58 g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~------l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
...++..++++.|-+.+.-+..+.++++.+++.++ +|||+++++|+|+.+...|+.++..
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 34478899999999999999999999999999999 6999999999999999999988653
No 38
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.86 E-value=0.00033 Score=60.35 Aligned_cols=113 Identities=21% Similarity=0.138 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHH---------H--HHHH-----Hhh-HH---HHHHHHHHHHHHHH
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK---------V--IRAY-----AVN-KA---WVIGFLMDIFGALL 61 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~---------~--~~~~-----l~~-~~---w~~G~~~~~~g~~~ 61 (196)
+.++..++.++++++.-...-|+.. .++.+...+ . ...+ ..+ +. ...|.. ..+++.+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 4688899999999988777766542 333221000 0 0011 001 11 134554 6888889
Q ss_pred HHHHhc-cCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHH----HHHHHHHHHHhhhcc
Q 029251 62 MLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW----MGITLAGIGTIGVGA 117 (196)
Q Consensus 62 ~~~aL~-~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~----~Gi~li~~Gv~~l~~ 117 (196)
++.+++ +.+.+...++...+++.+.+.+.+++||+.+++++ +|..++..|+.+++.
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 999999 99999999999999999999999999999999999 999999999998753
No 39
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.75 E-value=0.00052 Score=58.90 Aligned_cols=116 Identities=10% Similarity=0.112 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCch-------hH----HHHH--H---HHh----h--------HHHHHH
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTV--ILPPLSF-------KL----KVIR--A---YAV----N--------KAWVIG 51 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~--~~~~~~~-------~~----~~~~--~---~l~----~--------~~w~~G 51 (196)
+.+..+++.++.+.++.++..|+..+ +.++... +. +... . ... + ..|...
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 45788999999999999999998766 3332221 00 0000 0 000 0 001111
Q ss_pred HH----HHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 52 FL----MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 52 ~~----~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
.. ++.....+++.++++.+-+..........+++.+++.+++||++|..+++|..++..|+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 1111113455789999999999999999999999999999999999999999999999998764
No 40
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.71 E-value=0.0011 Score=56.42 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-CCCCchhHHHHH--------------HHHhhHHH-HHHHHHHHHH----HHHHH
Q 029251 4 LICLTLAATAGNNIGKVLQKKGTVI-LPPLSFKLKVIR--------------AYAVNKAW-VIGFLMDIFG----ALLML 63 (196)
Q Consensus 4 ~i~lal~aa~~~~~g~~lqk~~~~~-~~~~~~~~~~~~--------------~~l~~~~w-~~G~~~~~~g----~~~~~ 63 (196)
++.+++.+..|-+.=-+.-||..+. .++.+....... .-+.+|.. ..++..-+.+ +.+..
T Consensus 149 Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEm 228 (292)
T COG5006 149 GVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEM 228 (292)
T ss_pred HHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHH
Confidence 5677788888776555554554432 222221111111 12223333 2344333333 46889
Q ss_pred HHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 64 ~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
.||++.|-..-.-+++++..+.++.+..++||++|..||.|+.+++.+..-.+
T Consensus 229 iAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 229 IALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred HHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999998877544
No 41
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.68 E-value=0.0012 Score=57.00 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251 48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (196)
Q Consensus 48 w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~ 119 (196)
|..-..++.++..+...+|++.|.+.-+-.-+..++.+++++.+++|+|.+++||.++.++++|+.+...++
T Consensus 67 ~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~ 138 (303)
T PF08449_consen 67 YAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSD 138 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecc
Confidence 444456888899999999999999999999999999999999999999999999999999999999876543
No 42
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.37 E-value=0.00046 Score=59.56 Aligned_cols=71 Identities=27% Similarity=0.501 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 48 w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
+....+||+.|+.++.+.|..-.-|--|.+...-++|+.++|.-+++++++.++|.|+..+++|++.+...
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 34567799999999999999999999999999999999999999999999999999999999999987643
No 43
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.29 E-value=0.031 Score=47.88 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh-HH------HHHHH-------HhhHHH----HHHHHHHHHHHHHHH
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFK-LK------VIRAY-------AVNKAW----VIGFLMDIFGALLML 63 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~-~~------~~~~~-------l~~~~w----~~G~~~~~~g~~~~~ 63 (196)
+.++...+.+..+.+.+...-|.+.++.++.... .+ ....+ .++..| ..|. +......+++
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~ 89 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGV-SLGGMNYLFY 89 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4578888899999999888999888776654321 01 11111 111122 4444 3566677889
Q ss_pred HHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 64 ~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
.++++.|.+.+.-+..+.++++++++ +|+.+ ++.++.+...|+.++..
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeee
Confidence 99999999999988888888888876 35543 45667777889887653
No 44
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.29 E-value=0.0074 Score=51.83 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHHHhCCcCchHHHH----HHHHHHHHHhhhccCCCCC
Q 029251 50 IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVGAGGEEQ 122 (196)
Q Consensus 50 ~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~~l~e~l~~~~~~----Gi~li~~Gv~~l~~~~~~~ 122 (196)
.+.++..+|...|+.++++..+|...|+. ...++.+.+++.++|||.-+..+++ +++++++|+.+.+.++++.
T Consensus 50 lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~ 127 (269)
T PF06800_consen 50 LSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKS 127 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccc
Confidence 34446788999999999999999999997 7999999999999999999988875 7788899999988765443
No 45
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=97.18 E-value=0.0017 Score=48.20 Aligned_cols=99 Identities=23% Similarity=0.356 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcccCCCCch-------hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHH
Q 029251 15 NNIGKVLQKKGTVILPPLSF-------KLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILS 86 (196)
Q Consensus 15 ~~~g~~lqk~~~~~~~~~~~-------~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~ 86 (196)
-..-+-+.|+++....+... -....+.++.|+.++..+.+.--|..+++.-|+..|.|+..|+. ++++.|++
T Consensus 15 WG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta 94 (125)
T KOG4831|consen 15 WGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTA 94 (125)
T ss_pred HccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHH
Confidence 34446677777754433221 12344566778889999999999999999999999999999997 78999999
Q ss_pred HHHHHHhCCcCch-HHHHHHHHHHHHHhh
Q 029251 87 IFSHFYLKEVMNA-VDWMGITLAGIGTIG 114 (196)
Q Consensus 87 ~~~~~~l~e~l~~-~~~~Gi~li~~Gv~~ 114 (196)
+++.. +||++.. +...|..++++|+.+
T Consensus 95 ~~G~~-LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 95 IFGKA-LGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHHH-hccccccceeehhhhHHhhhhhh
Confidence 99975 5665554 566799999999875
No 46
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.04 E-value=0.019 Score=50.70 Aligned_cols=115 Identities=10% Similarity=0.135 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCC----CCch----------h----HHHH--HHHHh-hH------------H-
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILP----PLSF----------K----LKVI--RAYAV-NK------------A- 47 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~----~~~~----------~----~~~~--~~~l~-~~------------~- 47 (196)
|.|..+++.++++.+..++..|+..++.+ +.+. + .+.. ..... .+ .
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 57899999999999999999988775432 1110 0 0110 00000 00 0
Q ss_pred --HHHHHHHHHHHHHHHH----HHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 48 --WVIGFLMDIFGALLML----RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 48 --w~~G~~~~~~g~~~~~----~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
.+...++.++.+.+|. ..+++.+-.-..-......+++.+++.+++||++|..+++|..++..|+.+.+
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 0112233334444443 47777777777777789999999999999999999999999999999998754
No 47
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.78 E-value=0.008 Score=53.71 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=58.8
Q ss_pred HHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCCCCC
Q 029251 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQE 123 (196)
Q Consensus 58 g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~~~~ 123 (196)
.-...-.||++-+++-.+-+.++|=.|+..++..+-+||+|..+.+++.+.+.||++++.+++.+.
T Consensus 172 anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 172 ANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 334556789999999999999999999999999999999999999999999999999987766554
No 48
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.76 E-value=0.058 Score=41.13 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=42.5
Q ss_pred HHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhh
Q 029251 61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (196)
Q Consensus 61 ~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~ 114 (196)
..+..+++.+-.--+-+...--+++.+++..++||++|..++.|+.+...|+..
T Consensus 97 ~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 97 SSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 334445555555555566777888999999999999999999999999999864
No 49
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.73 E-value=0.034 Score=49.47 Aligned_cols=114 Identities=16% Similarity=0.022 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc--h------------------hHHHHHHHHh--hHH-H---HHHHHHH
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS--F------------------KLKVIRAYAV--NKA-W---VIGFLMD 55 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~--~------------------~~~~~~~~l~--~~~-w---~~G~~~~ 55 (196)
.+++...+++.+|++-=.+-||+-. + -+.+ + ..+.+..+++ ++. | ..+.++-
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~~k-~-w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W 83 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKKVK-K-WSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW 83 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccccC-C-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4678888889998887777788833 2 2211 0 0112222222 111 2 3445567
Q ss_pred HHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHHHhCCcC---chH----HHHHHHHHHHHHhhhcc
Q 029251 56 IFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVM---NAV----DWMGITLAGIGTIGVGA 117 (196)
Q Consensus 56 ~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~~l~e~l---~~~----~~~Gi~li~~Gv~~l~~ 117 (196)
.+|-..|..+.++.-+|+.+|+. .+.++++.++..+++||-- +.. ..+|++++++|+.+.+.
T Consensus 84 ~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 84 GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999996 7999999999999999754 433 34699999999999875
No 50
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.71 E-value=0.034 Score=49.24 Aligned_cols=119 Identities=14% Similarity=0.060 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch-h-HHHHHHH-------------HhhHHHHHHHHHH-HHHHHHHH--
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-K-LKVIRAY-------------AVNKAWVIGFLMD-IFGALLML-- 63 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~-~-~~~~~~~-------------l~~~~w~~G~~~~-~~g~~~~~-- 63 (196)
.++=.+++.+|.++++.+++||+-.++.++..+ + .+.+... +.+-.|-...... +...++++
T Consensus 167 i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~ 246 (334)
T PF06027_consen 167 ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLF 246 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHH
Confidence 356678999999999999999999887664331 1 0111000 0111121111111 11122222
Q ss_pred -----HHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCC
Q 029251 64 -----RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120 (196)
Q Consensus 64 -----~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~ 120 (196)
..++..+-....-=..++-..+.+++.+++|++++...++|-+++++|+++....++
T Consensus 247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 233333333333334677888999999999999999999999999999998765443
No 51
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.13 Score=45.62 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 48 w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
+.....+|.+---+++.+++..|-+.-|...-+-+..|++++..+|+||++.++|....+...|+.++.
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 345566787777799999999999999999999999999999999999999999999999999999987
No 52
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.59 E-value=0.0036 Score=53.80 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 54 ~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
+-..|..++++++.+.|++=+.-+.-++++++.+++..++||+.|+.|-.|......||+++.++
T Consensus 106 mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 106 MGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred hhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 44567788999999999999999999999999999999999999999999999999999998753
No 53
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.58 E-value=0.02 Score=46.96 Aligned_cols=112 Identities=14% Similarity=0.062 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc----hhHHH------HHHHHh---------------hHHHHHHHHHHH
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS----FKLKV------IRAYAV---------------NKAWVIGFLMDI 56 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~----~~~~~------~~~~l~---------------~~~w~~G~~~~~ 56 (196)
|.++...+.+..+.+...+.|++..++.+..- ...+. ...... ++..+.-..+..
T Consensus 84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 163 (222)
T TIGR00803 84 VVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNV 163 (222)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHH
Confidence 34555566667777888899998865432111 01110 000000 122233344566
Q ss_pred HHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHh
Q 029251 57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113 (196)
Q Consensus 57 ~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~ 113 (196)
++..+-...+++.+-....-...++.+++.+++.++++|+++...|.|+.++..|+.
T Consensus 164 ~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 164 GGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred hcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 666777777888888888888999999999999999999999999999999988764
No 54
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=96.19 E-value=0.023 Score=47.01 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=58.2
Q ss_pred HHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCCCC
Q 029251 60 LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQ 122 (196)
Q Consensus 60 ~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~~~ 122 (196)
-.++.||+..+-|.+..+.+.+-.|+-+++..++|+|+..-+.+.+.+...|+++++..+++.
T Consensus 68 Y~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 68 YLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred cHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 467889999999999999999999999999999999999999999999999999999766554
No 55
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.92 E-value=0.068 Score=46.30 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=51.0
Q ss_pred HHHHHhhHHHHHHHHH----HHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHh
Q 029251 39 IRAYAVNKAWVIGFLM----DIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113 (196)
Q Consensus 39 ~~~~l~~~~w~~G~~~----~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~ 113 (196)
.+...++|+-+....+ .......++.|-+.+-.--+ .+. -.+++++.+++..++|||+|+.||+.+.+..+||.
T Consensus 62 ~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~lea-SLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~ 140 (293)
T COG2962 62 LKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEA-SLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVL 140 (293)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHH-HhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 3445566765444333 33444455555544322111 222 46778899999999999999999999999999998
Q ss_pred hhc
Q 029251 114 GVG 116 (196)
Q Consensus 114 ~l~ 116 (196)
...
T Consensus 141 ~~~ 143 (293)
T COG2962 141 IQT 143 (293)
T ss_pred HHH
Confidence 754
No 56
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=95.23 E-value=0.75 Score=39.56 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCch---------hHHHHH--H--------------HHhhHHHHHHH----H
Q 029251 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF---------KLKVIR--A--------------YAVNKAWVIGF----L 53 (196)
Q Consensus 3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~---------~~~~~~--~--------------~l~~~~w~~G~----~ 53 (196)
.|+.+.+.+.++.+.-...|++..++-+.... +.+... . ....|..+.-. .
T Consensus 154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 37888899999999999999998876543221 111000 0 01122222111 1
Q ss_pred HHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 54 ~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
+...|........+.-.-....-+..+--.++.++|..+++++++..+|.|+.++..|+.+=..
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 2222333333333333333444455666788899999999999999999999999999887543
No 57
>PRK02237 hypothetical protein; Provisional
Probab=95.12 E-value=0.21 Score=37.11 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-CchhHHHhhhhhHHHH-HHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251 47 AWVIGFLMDIFGALLMLRALSQ-APVSVIQPVSGCGLAI-LSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (196)
Q Consensus 47 ~w~~G~~~~~~g~~~~~~aL~~-~plsvv~pl~~~~~v~-~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~ 119 (196)
.|+.-.....+....++..++- .+..-++.--..-++. +.+-...+.|+++++.||+|..++.+|+.++-..|
T Consensus 33 ~~~~~pg~~~L~lfg~llTl~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 33 AWWLLPGALSLALFGWLLTLQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 3443333334444455555654 5577788665555544 55889999999999999999999999998775443
No 58
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.89 E-value=0.075 Score=45.71 Aligned_cols=66 Identities=26% Similarity=0.291 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHH----HHHHHHHHHhh
Q 029251 49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIG 114 (196)
Q Consensus 49 ~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~----Gi~li~~Gv~~ 114 (196)
..+.++..+|..+++.+-+..-++..+|+.-++++++.+-+.+++||+=+++|+. |+.+++.|.++
T Consensus 199 il~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 199 ILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 4555578889999999999999999999999999999999999999999999884 66777666543
No 59
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=94.80 E-value=0.23 Score=36.80 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251 47 AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (196)
Q Consensus 47 ~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~ 119 (196)
.|+.-.....+....++..++-.+..-++.-- ..-.+.+.+-...+.|+++++.|++|..++.+|+.++-..|
T Consensus 32 ~~~~~~G~~~L~lfg~l~Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 32 PWWLLPGALSLALFGWLLTLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred eeeHhhHHHHHHHHHHHhhcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 34433333444555566667777788888654 55556677888999999999999999999999998876544
No 60
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=92.27 E-value=2.7 Score=35.39 Aligned_cols=105 Identities=15% Similarity=0.043 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHH------------HHHHHHh--------------hHHHHHHHHHH
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK------------VIRAYAV--------------NKAWVIGFLMD 55 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~------------~~~~~l~--------------~~~w~~G~~~~ 55 (196)
++++...++++.+.+.+.+..++..++.+. +.-.+ ......+ ++.-|.-...+
T Consensus 113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~~-s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~ 191 (244)
T PF04142_consen 113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSNV-SLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQ 191 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHH
Confidence 467888999999999999888887766431 11000 0000011 22223444556
Q ss_pred HHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHH
Q 029251 56 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITL 107 (196)
Q Consensus 56 ~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~l 107 (196)
.+|-++--..+++.+--+=.=..+.+.+++.+++..+++.++|..-.+|..+
T Consensus 192 a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 192 AIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 6666666666777665544445678999999999999999999988887654
No 61
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=91.45 E-value=1.1 Score=33.11 Aligned_cols=73 Identities=14% Similarity=0.033 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCc-hhHHHhhh-hhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCC
Q 029251 48 WVIGFLMDIFGALLMLRALSQAP-VSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120 (196)
Q Consensus 48 w~~G~~~~~~g~~~~~~aL~~~p-lsvv~pl~-~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~ 120 (196)
|+.......+....++..+...| ..-++.-- ..-++.+..-...+.|.++++.+|+|..++.+|+.++...|.
T Consensus 33 ~~~l~g~~sL~lf~~llT~~~~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 33 LWLLPGALSLALFGWLLTLQPAAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HhHHHHHHHHHHHHHHHHcCCchhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 34333333444444555544434 55666544 445556677788889999999999999999999888765543
No 62
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=89.96 E-value=0.11 Score=44.38 Aligned_cols=68 Identities=24% Similarity=0.241 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHHHhCCcCchHHHH----HHHHHHHHHhhhccCC
Q 029251 52 FLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVGAGG 119 (196)
Q Consensus 52 ~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~~l~e~l~~~~~~----Gi~li~~Gv~~l~~~~ 119 (196)
..+-.+|...|+.+.+...+|...|+. ...++-+.+++.+.+||.-++.+.+ +..+++.|+.+-+..+
T Consensus 66 G~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~ 138 (288)
T COG4975 66 GAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQD 138 (288)
T ss_pred hhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeec
Confidence 345677889999999999999999997 6889999999999999999987763 6677888888887654
No 63
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=89.87 E-value=2.1 Score=32.92 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHH----HhCCcCchHHHHHHHHHHHHHhh
Q 029251 49 VIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHF----YLKEVMNAVDWMGITLAGIGTIG 114 (196)
Q Consensus 49 ~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~----~l~e~l~~~~~~Gi~li~~Gv~~ 114 (196)
+.|..+-..-..+......+...+...-+. ...++.+.++-++ .-++++++++..|+.+++.|+++
T Consensus 68 ~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 68 YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 567666666667777777777777777665 4555666666665 46789999999999999999864
No 64
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=89.21 E-value=1.4 Score=38.29 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=44.5
Q ss_pred HHHHhccCchhHHHhhhhhHH-HHHHHHHHHHhCC--cCchHHH----HHHHHHHHHHhhhccCCCCC
Q 029251 62 MLRALSQAPVSVIQPVSGCGL-AILSIFSHFYLKE--VMNAVDW----MGITLAGIGTIGVGAGGEEQ 122 (196)
Q Consensus 62 ~~~aL~~~plsvv~pl~~~~~-v~~~~~~~~~l~e--~l~~~~~----~Gi~li~~Gv~~l~~~~~~~ 122 (196)
.-.+|+.-|-+++.|+.-..+ ..+.+-|..++|| +.+..++ .|...++.|+.+++...|.+
T Consensus 230 LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~ 297 (300)
T PF05653_consen 230 LNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKE 297 (300)
T ss_pred HHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchh
Confidence 356889999999999986555 4555666667887 4555555 47888899999998665443
No 65
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=89.19 E-value=14 Score=31.94 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCch-hHH-----HHHHHHhhHH-------HHHHHHHHHHHH----HHHHHHh
Q 029251 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLK-----VIRAYAVNKA-------WVIGFLMDIFGA----LLMLRAL 66 (196)
Q Consensus 4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~-~~~-----~~~~~l~~~~-------w~~G~~~~~~g~----~~~~~aL 66 (196)
.++.-+.+......|..+-|..--..+..+. ..+ .+...+.+|+ -+.-...|+... .+++.++
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si 92 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI 92 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666777776666555543321 111 1111111211 134445555444 3568899
Q ss_pred ccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCCCCCCCcchhhhHHHHHHHHHHHHHHH
Q 029251 67 SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLL 146 (196)
Q Consensus 67 ~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (196)
++.|+.++..+--++.+..+.++.+ +.++.+.+.+.+.|+.++.-.++..+ +.+. ..+......-.|+
T Consensus 93 ~riPlGiAVAiEF~GPL~vA~~~sR------r~~d~vwvaLAvlGi~lL~p~~~~~~--~lDp----~Gv~~Al~AG~~W 160 (292)
T COG5006 93 ERIPLGIAVAIEFTGPLAVALLSSR------RLRDFVWVALAVLGIWLLLPLGQSVW--SLDP----VGVALALGAGACW 160 (292)
T ss_pred HhccchhhhhhhhccHHHHHHHhcc------chhhHHHHHHHHHHHHhheeccCCcC--cCCH----HHHHHHHHHhHHH
Confidence 9999999999988888777776554 45676777888888887764333222 1222 1222233344566
Q ss_pred HHHHHHhhh
Q 029251 147 NGWLRICKH 155 (196)
Q Consensus 147 ~~~~~~~~~ 155 (196)
+.|-...+|
T Consensus 161 a~YIv~G~r 169 (292)
T COG5006 161 ALYIVLGQR 169 (292)
T ss_pred HHHHHHcch
Confidence 666444443
No 66
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=89.17 E-value=9.6 Score=34.52 Aligned_cols=120 Identities=11% Similarity=-0.015 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCch----hH-HHHHH-HHhhHHH----------------------HHHH
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVILP-PLSF----KL-KVIRA-YAVNKAW----------------------VIGF 52 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~-~~~~----~~-~~~~~-~l~~~~w----------------------~~G~ 52 (196)
.+|-++++++|+.+++=.++.||-..+.+ +.+. |. +.+.. ++..|.| ..+.
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l 325 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL 325 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence 46789999999999999999998887763 4431 11 11111 1111111 4455
Q ss_pred HHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCCC
Q 029251 53 LMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEE 121 (196)
Q Consensus 53 ~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~~ 121 (196)
+-.+++-.+|..|.-.-+--+++--+++++..+++.=..+-|.+.|....+|...+.+|-+++..+.+.
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 555566678988887777777777778888888888888889999999999999999999988755443
No 67
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=88.11 E-value=0.09 Score=46.23 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 54 ~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
.+.++-.+.-.++++.|+|..|.+-+++++++.+++.++.+|+.+..-+.-...++.|+.+-+.
T Consensus 92 ~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 92 VFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred HHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 5777888899999999999999999999999999999999999999877766667777666554
No 68
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=87.77 E-value=3.2 Score=36.11 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 55 DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 55 ~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
-.+-..++..+-++.|+|..-=+.-.++....+++.+++||+++..++..-+++-+|+++.+.
T Consensus 221 TavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 221 TAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445557899999999999999999999999999999999999999999999999999888763
No 69
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.73 E-value=2.5 Score=31.10 Aligned_cols=37 Identities=30% Similarity=0.176 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhh
Q 029251 79 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (196)
Q Consensus 79 ~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l 115 (196)
..++.+-.++|.++++|+++...+.|-.++..|+..+
T Consensus 77 VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 77 VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 5667788899999999999999999999998888765
No 70
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=84.08 E-value=20 Score=29.59 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCc-h-h---HHHHH-H----HHh-----hH--HH----HHHHHHHHHHHHHHHHH
Q 029251 7 LTLAATAGNNIGKVLQKKGTVILPPLS-F-K---LKVIR-A----YAV-----NK--AW----VIGFLMDIFGALLMLRA 65 (196)
Q Consensus 7 lal~aa~~~~~g~~lqk~~~~~~~~~~-~-~---~~~~~-~----~l~-----~~--~w----~~G~~~~~~g~~~~~~a 65 (196)
..+.++++.+.....+|+..++..... . . .+... . ... ++ .| ..|. +..++..++..+
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~t~i~~~l~~~a 228 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNTDLAGFCLETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGL-ITGTPLLAFVIA 228 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 467788888888888888654211100 0 0 01100 0 000 11 23 2333 356788999999
Q ss_pred hccCchhHHHhhhhhHHHHHHHHHHHH
Q 029251 66 LSQAPVSVIQPVSGCGLAILSIFSHFY 92 (196)
Q Consensus 66 L~~~plsvv~pl~~~~~v~~~~~~~~~ 92 (196)
+++.|.+.+.++.-++++++.+++.++
T Consensus 229 ~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 229 ANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999764
No 71
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=82.43 E-value=1.8 Score=32.07 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhh
Q 029251 79 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (196)
Q Consensus 79 ~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l 115 (196)
..++.+-.+++.+++||+++.....|-.+++.++..+
T Consensus 70 vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 70 VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 5677778899999999999999999999998887643
No 72
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=72.94 E-value=15 Score=32.18 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHhccC-chhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 49 VIGFLMDIFGALLMLRALSQA-PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 49 ~~G~~~~~~g~~~~~~aL~~~-plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
..-..++.+.-+++-.|+++. |.-+=.-+.+.+++.++.++..++|+|-+.++...+..+.+|+++-.
T Consensus 68 ~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcT 136 (330)
T KOG1583|consen 68 AITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICT 136 (330)
T ss_pred heehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEE
Confidence 333334444556677777553 22222223589999999999999999999999999999999998743
No 73
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=72.65 E-value=1.3 Score=37.95 Aligned_cols=63 Identities=29% Similarity=0.364 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHH----HHHHHHHHHHhhhc
Q 029251 54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW----MGITLAGIGTIGVG 116 (196)
Q Consensus 54 ~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~----~Gi~li~~Gv~~l~ 116 (196)
....|-..++.+=+..-++-...+.-++.+++.+-+.++||||=|++|| +|+.++++|.++++
T Consensus 218 ~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 218 IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 4556666777776666666677788889999999999999999999998 48888888877765
No 74
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.60 E-value=48 Score=26.11 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHHhC----CcCchHHHHHHHHHHHHHhhhc
Q 029251 78 SGCGLAILSIFSHFYLK----EVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 78 ~~~~~v~~~~~~~~~l~----e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
.+..++..+++-.+=++ ++++..++.|++++.+|++++.
T Consensus 103 i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 103 IAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred HHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 44555666666666554 7899999999999999965554
No 75
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=70.46 E-value=6.8 Score=33.57 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhh
Q 029251 80 CGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (196)
Q Consensus 80 ~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~ 114 (196)
+-=.|+.+.|.++++.+++.++|+|..++..++..
T Consensus 276 TRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 276 TRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 34468999999999999999999999999888775
No 76
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=69.75 E-value=59 Score=29.09 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHHHhCC-------cCchHHHHHHHHHHHHHhhhcc
Q 029251 54 MDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKE-------VMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 54 ~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~~l~e-------~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
+-++|-+.+=.+.++.-+|+.|.+. .+..++..++-..+.++ +-...-++|+.++.+|+.+.+.
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~ 153 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK 153 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence 5677778888899999999999885 77888888876666543 2233556799999999998863
No 77
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=66.68 E-value=88 Score=27.68 Aligned_cols=67 Identities=7% Similarity=0.118 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 50 ~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
.-.....++.-+++-||++.+.=...---+.-.+-+++++.++.++|.+..|..=..++..|+.+.+
T Consensus 88 ~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~ 154 (327)
T KOG1581|consen 88 LISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFS 154 (327)
T ss_pred HHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEE
Confidence 3344678888999999999987544433456778899999999999999999999999999988765
No 78
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=64.49 E-value=0.87 Score=39.26 Aligned_cols=56 Identities=16% Similarity=0.321 Sum_probs=50.9
Q ss_pred HHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 61 ~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
+-+.|.++-++.-++-+.+-..+...+++.+++|.|-...+..|+.+|..|++++.
T Consensus 94 ~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV 149 (336)
T KOG2766|consen 94 FVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVV 149 (336)
T ss_pred EEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEE
Confidence 45678888899999999999999999999999999999999999999999998764
No 79
>PRK13499 rhamnose-proton symporter; Provisional
Probab=58.27 E-value=1.4e+02 Score=26.71 Aligned_cols=66 Identities=17% Similarity=0.025 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhccCch---hHHHhhh-hhHHHHHHHHHHHHhCCcCc--h----HHHHHHHHHHHHHhhhccC
Q 029251 52 FLMDIFGALLMLRALSQAPV---SVIQPVS-GCGLAILSIFSHFYLKEVMN--A----VDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 52 ~~~~~~g~~~~~~aL~~~pl---svv~pl~-~~~~v~~~~~~~~~l~e~l~--~----~~~~Gi~li~~Gv~~l~~~ 118 (196)
.....++..++..+-++.+. ...+++. .++++++.+-+. ++||+=+ + .-++|+.++++|.+++..+
T Consensus 267 G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 267 GVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 33455555555555544422 2355677 788888888888 5999877 4 3457999999999887654
No 80
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=51.77 E-value=6.3 Score=34.78 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=52.3
Q ss_pred HHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251 60 LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (196)
Q Consensus 60 ~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~ 119 (196)
.+--+++.+.|+|.-+..-+.+++|..++|..+-=|+.+..-..=+.++..|+++....+
T Consensus 99 GLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 99 GLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred ccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 466789999999999999999999999999999999998887778888888988876543
No 81
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.76 E-value=12 Score=32.67 Aligned_cols=59 Identities=12% Similarity=-0.080 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHh
Q 029251 55 DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113 (196)
Q Consensus 55 ~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~ 113 (196)
++++....-.-|++.|++.-|-=.++..+|+.+++..++|++-+..-..++.+++.|-.
T Consensus 112 fi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 112 FILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFG 170 (347)
T ss_pred eeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhe
Confidence 34444566777888899888888899999999999999999999888777777766644
No 82
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=46.45 E-value=2.2e+02 Score=25.54 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251 49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (196)
Q Consensus 49 ~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~ 119 (196)
|.-.+.+..|-++--...++++=-.=.=..+.+.+++.+.|..+++.++|..-.+|+.+++..+.+-...|
T Consensus 254 w~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P 324 (345)
T KOG2234|consen 254 WLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYP 324 (345)
T ss_pred HHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCC
Confidence 34444455555555555555554333334567899999999999999999999999999999999877444
No 83
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=46.07 E-value=15 Score=32.09 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 83 v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
-+++++|...++.++|+..|+|..++..|.++-+
T Consensus 280 FvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 280 FVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 3677889999999999999999999999998865
No 84
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=40.32 E-value=1.6e+02 Score=25.30 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=53.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Q 029251 42 YAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGI 110 (196)
Q Consensus 42 ~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~ 110 (196)
+..++.+.......+...+.|.++.+.++.|.+-..=+.+++..+....++ +|..+.++|+=..++++
T Consensus 11 ~~~~~~~v~al~~~v~~~~~w~vs~~tg~~~~VD~~Wg~~~~~~a~~~~l~-~~~~~~r~~l~~~Lvtl 78 (272)
T COG3752 11 SNLMVIVVVALALAVLFAVAWAVSRRTGNYSWVDAVWGGGFVAVAVVLALL-GEGDPRRRWLLLFLVTL 78 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeehhccchHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence 344566677777778888899999999999999999998888777766666 99999888865555443
No 85
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=34.34 E-value=3.2e+02 Score=24.08 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251 86 SIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117 (196)
Q Consensus 86 ~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~ 117 (196)
...|..+++|++|..+..|..+..+|+.+=+.
T Consensus 276 i~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 276 IVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred EEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 34566788889999999999999999988653
No 86
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=31.26 E-value=2.2e+02 Score=21.01 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhh
Q 029251 103 MGITLAGIGTIGV 115 (196)
Q Consensus 103 ~Gi~li~~Gv~~l 115 (196)
.+..+.++|..+.
T Consensus 43 ~a~~~~~~g~~~~ 55 (129)
T smart00665 43 LALVLGVIGLLAI 55 (129)
T ss_pred HHHHHHHHHHHHH
Confidence 5667777776654
No 87
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=29.95 E-value=1.1e+02 Score=20.70 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 029251 2 WELICLTLAATAGNNIGKVLQKKGTVI 28 (196)
Q Consensus 2 w~~i~lal~aa~~~~~g~~lqk~~~~~ 28 (196)
|+++.+++++-...-+=++.||+.-.+
T Consensus 20 WlA~~~tll~l~~l~v~sv~qrr~iL~ 46 (67)
T COG3114 20 WLAVGMTLLPLAVLVVHSVLQRRAILR 46 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888999887643
No 88
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=29.44 E-value=67 Score=27.66 Aligned_cols=70 Identities=9% Similarity=0.029 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 49 ~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
.+...-|.++++..-.|+++.|.--..---+.-++=+++++..+.|.+-+.++..=++.|++||.+.-..
T Consensus 89 aAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK 158 (337)
T KOG1580|consen 89 AACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK 158 (337)
T ss_pred HHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence 4556667777777778888887533222224556678899999999999999999999999999987544
No 89
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=24.34 E-value=3.8e+02 Score=21.58 Aligned_cols=23 Identities=13% Similarity=0.466 Sum_probs=12.1
Q ss_pred HHhCCcCchHHHHHHHH-HHHHHh
Q 029251 91 FYLKEVMNAVDWMGITL-AGIGTI 113 (196)
Q Consensus 91 ~~l~e~l~~~~~~Gi~l-i~~Gv~ 113 (196)
+..++|++...|+..++ ++.|-.
T Consensus 41 ~~~~~~v~~m~~is~~lv~vFGgl 64 (178)
T TIGR00997 41 YVKYKKVEKMQWISFVLIVVFGGL 64 (178)
T ss_pred HHHhCCccHHHHHHHHHHHHHHHH
Confidence 34455777777763333 344443
No 90
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=23.55 E-value=1.7e+02 Score=25.95 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=38.2
Q ss_pred ccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhh
Q 029251 67 SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (196)
Q Consensus 67 ~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~ 114 (196)
+++|+.... ++.+-=.++..++.+.++++++..+|.|+..+..|+..
T Consensus 264 ~FGslt~t~-I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 264 RFGSLTFTT-IMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred hcccHHHHH-HHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 677776654 45556678889999999999999999999988888764
No 91
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=21.86 E-value=3.3e+02 Score=19.95 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhc
Q 029251 103 MGITLAGIGTIGVG 116 (196)
Q Consensus 103 ~Gi~li~~Gv~~l~ 116 (196)
+|..+.++|..++-
T Consensus 44 l~~~~~~~G~~~~~ 57 (137)
T PF03188_consen 44 LALVFAIIGFVAIF 57 (137)
T ss_pred HHHHHHHHHHHHHH
Confidence 57777777776653
No 92
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=20.09 E-value=1.1e+02 Score=26.99 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=41.7
Q ss_pred HHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (196)
Q Consensus 58 g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~ 116 (196)
|.++.-.+++.---.-+.-+..+.++++.+.-..++||..|...|.|.++++...+..+
T Consensus 266 gQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 266 GQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred HHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 44444455544322233334567889999999999999999999999998877666544
Done!