Query 029251
Match_columns 196
No_of_seqs 196 out of 1202
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.5 2.2E-13 7.6E-18 100.6 14.2 102 4-119 3-105 (110)
2 2i68_A Protein EMRE; transmemb 99.4 6.8E-13 2.3E-17 101.8 8.1 100 5-118 4-104 (137)
3 2zt9_E Cytochrome B6-F complex 40.5 35 0.0012 18.8 3.2 16 170-185 12-27 (31)
4 1vf5_E Protein PET L; photosyn 25.1 38 0.0013 18.8 1.7 15 170-184 13-27 (32)
5 2los_A Transmembrane protein 1 9.7 96 0.0033 22.4 0.0 17 170-186 46-62 (121)
6 4e17_B Catenin alpha-1; four h 6.0 3.2E+02 0.011 15.8 1.9 15 12-26 19-33 (40)
7 2hac_A T-cell surface glycopro 4.6 3.3E+02 0.011 15.0 1.2 18 82-99 13-30 (33)
8 1z65_A PRPLP, prion-like prote 4.4 5E+02 0.017 13.9 1.8 10 2-11 9-18 (30)
9 4e18_B Catenin alpha-1; four h 3.5 5.8E+02 0.02 15.9 1.9 15 12-26 38-52 (59)
10 2ks1_B Epidermal growth factor 3.4 6.8E+02 0.023 14.5 2.0 24 138-161 21-44 (44)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.54 E-value=2.2e-13 Score=100.60 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhh-hhhHH
Q 029251 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL 82 (196)
Q Consensus 4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl-~~~~~ 82 (196)
...+-+++.++...+|...|++.+ +. ++++++.+..++.+++.++..++++.|++.++|+ .++++
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s~~----~~----------~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~ 68 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFSEG----FT----------RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC----cc----------hHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence 345567788999999999999742 11 2356688899999999999999999999999999 79999
Q ss_pred HHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251 83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (196)
Q Consensus 83 v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~ 119 (196)
+++++++.+++||++|+.+|+|+.+++.|++++...+
T Consensus 69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999987644
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.40 E-value=6.8e-13 Score=101.77 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhh-hhhHHH
Q 029251 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLA 83 (196)
Q Consensus 5 i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl-~~~~~v 83 (196)
.++-+++.++...+|.+.|++..- .++++++.+.+++++++.++..++++.|++.++|+ ..++++
T Consensus 4 ~l~Ll~ail~ev~~~~~lK~s~g~--------------~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv 69 (137)
T 2i68_A 4 YIYLGGAILAEVIGTTLMKFSEGF--------------TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (137)
T ss_dssp CHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--------------chHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 345567888899999999987411 12356679999999999999999999999999999 899999
Q ss_pred HHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251 84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (196)
Q Consensus 84 ~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~ 118 (196)
++++++.+++||++|..+|+|+.+++.|++++...
T Consensus 70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998643
No 3
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=40.46 E-value=35 Score=18.84 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 029251 170 EIIYGLESGILFGYYF 185 (196)
Q Consensus 170 a~~~G~aaG~~fg~~a 185 (196)
+..+|+++|+.||+-+
T Consensus 12 ~~~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 12 ALFTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5778999999999865
No 4
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=25.08 E-value=38 Score=18.83 Aligned_cols=15 Identities=27% Similarity=0.786 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 029251 170 EIIYGLESGILFGYY 184 (196)
Q Consensus 170 a~~~G~aaG~~fg~~ 184 (196)
+..+|+++|+.||+-
T Consensus 13 ~~~f~iA~GL~fGlr 27 (32)
T 1vf5_E 13 ALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 577899999999864
No 5
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=9.74 E-value=96 Score=22.41 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029251 170 EIIYGLESGILFGYYFL 186 (196)
Q Consensus 170 a~~~G~aaG~~fg~~av 186 (196)
++..|+..|.++++++.
T Consensus 46 SLiaGl~~G~l~~~~a~ 62 (121)
T 2los_A 46 SLAAGLLFGSLAGLGAY 62 (121)
Confidence 45556666666555554
No 6
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=6.04 E-value=3.2e+02 Score=15.77 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhc
Q 029251 12 TAGNNIGKVLQKKGT 26 (196)
Q Consensus 12 a~~~~~g~~lqk~~~ 26 (196)
+-|+++.|.+|--.+
T Consensus 19 ~eCnavrqALQdLls 33 (40)
T 4e17_B 19 AECNAVRQALQDLLS 33 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 568999999987654
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=4.58 E-value=3.3e+02 Score=15.03 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhCCcCch
Q 029251 82 LAILSIFSHFYLKEVMNA 99 (196)
Q Consensus 82 ~v~~~~~~~~~l~e~l~~ 99 (196)
++...++-.++.+||++.
T Consensus 13 ~iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 13 FIYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344455555566766654
No 8
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=4.45 E-value=5e+02 Score=13.92 Aligned_cols=10 Identities=40% Similarity=0.557 Sum_probs=5.8
Q ss_pred HHHHHHHHHH
Q 029251 2 WELICLTLAA 11 (196)
Q Consensus 2 w~~i~lal~a 11 (196)
|++|+..++.
T Consensus 9 wlai~c~LLf 18 (30)
T 1z65_A 9 WVAILCMLLA 18 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 9
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=3.52 E-value=5.8e+02 Score=15.93 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhc
Q 029251 12 TAGNNIGKVLQKKGT 26 (196)
Q Consensus 12 a~~~~~g~~lqk~~~ 26 (196)
+-|+++.|.+|--.+
T Consensus 38 ~eCnavrqALQdLls 52 (59)
T 4e18_B 38 AECNAVRQALQDLLS 52 (59)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 568999999987554
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=3.42 E-value=6.8e+02 Score=14.49 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhH
Q 029251 138 VVSILFVLLNGWLRICKHQRREQE 161 (196)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~r~~~~ 161 (196)
+..+++..+..+..++++..++++
T Consensus 21 v~~~~ii~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCC
T ss_pred HHHHHHHHHHHHHHhhhhHhhccC
Done!