Query 029251
Match_columns 196
No_of_seqs 196 out of 1202
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 16:09:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029251.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029251hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 44.0 14 0.001 18.6 3.2 17 169-185 12-28 (32)
2 d2p7tc1 f.14.1.1 (C:86-119) Po 4.0 2.8E+02 0.021 13.6 2.4 19 74-92 12-30 (34)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 2.0 5.1E+02 0.037 12.3 2.3 13 86-98 16-28 (30)
4 d1uspa_ d.227.1.1 (A:) Organic 1.8 8.8E+02 0.064 14.5 3.2 22 6-27 49-70 (137)
5 d1cola_ f.1.1.1 (A:) Colicin A 1.7 1E+03 0.074 16.5 3.5 16 77-92 168-183 (197)
6 d1ukka_ d.227.1.1 (A:) Hypothe 1.6 9.8E+02 0.071 14.5 3.2 22 6-27 50-71 (141)
7 d1qwia_ d.227.1.1 (A:) Osmotic 1.4 1.1E+03 0.081 14.3 3.2 21 6-26 52-72 (142)
8 d1q90r_ f.23.12.1 (R:) ISP sub 1.4 8.1E+02 0.059 12.5 3.6 14 170-183 15-28 (39)
9 d1xsza2 d.129.9.1 (A:198-354) 1.3 3.3E+02 0.024 18.2 -0.1 12 87-98 85-96 (157)
10 d1z96a1 a.5.2.1 (A:295-332) UB 1.3 7.9E+02 0.058 12.0 2.0 20 60-79 6-25 (38)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=43.98 E-value=14 Score=18.61 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029251 169 EEIIYGLESGILFGYYF 185 (196)
Q Consensus 169 ~a~~~G~aaG~~fg~~a 185 (196)
-++.+|.+.|+.|+.-+
T Consensus 12 ialffgiavgiifaiks 28 (32)
T d2e74e1 12 IALFFGIAVGIIFAIKS 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhheeeEEE
Confidence 37889999999998743
No 2
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=4.02 E-value=2.8e+02 Score=13.64 Aligned_cols=19 Identities=16% Similarity=0.398 Sum_probs=10.5
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 029251 74 IQPVSGCGLAILSIFSHFY 92 (196)
Q Consensus 74 v~pl~~~~~v~~~~~~~~~ 92 (196)
+.-+.+.++++.++.-.+.
T Consensus 12 vagits~glv~aa~atwfv 30 (34)
T d2p7tc1 12 VAGITSFGLVTAALATWFV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EeccchhhhHHHHHHHHhh
Confidence 3445566666666654443
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.97 E-value=5.1e+02 Score=12.26 Aligned_cols=13 Identities=15% Similarity=0.329 Sum_probs=6.8
Q ss_pred HHHHHHHhCCcCc
Q 029251 86 SIFSHFYLKEVMN 98 (196)
Q Consensus 86 ~~~~~~~l~e~l~ 98 (196)
+.+-+.+++|+..
T Consensus 16 lfffaiffreppr 28 (30)
T d2axtt1 16 LFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHTSCCCC
T ss_pred HHHHHHHhcCCCC
Confidence 3344456677643
No 4
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=1.78 E-value=8.8e+02 Score=14.51 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 029251 6 CLTLAATAGNNIGKVLQKKGTV 27 (196)
Q Consensus 6 ~lal~aa~~~~~g~~lqk~~~~ 27 (196)
+.++.+.....+..+++|++..
T Consensus 49 laAlasC~~~t~~~~a~~~gi~ 70 (137)
T d1uspa_ 49 AAGYAACFQGALGVVSRRQKID 70 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 4456666666777788887753
No 5
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=1.68 E-value=1e+03 Score=16.51 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=7.0
Q ss_pred hhhhHHHHHHHHHHHH
Q 029251 77 VSGCGLAILSIFSHFY 92 (196)
Q Consensus 77 l~~~~~v~~~~~~~~~ 92 (196)
+.-.+++++.+.+.+.
T Consensus 168 iGI~g~li~~~v~alI 183 (197)
T d1cola_ 168 VGIAGILLAAVVGALI 183 (197)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444443
No 6
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=1.62 E-value=9.8e+02 Score=14.49 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 029251 6 CLTLAATAGNNIGKVLQKKGTV 27 (196)
Q Consensus 6 ~lal~aa~~~~~g~~lqk~~~~ 27 (196)
+.++.+.....+...++|++..
T Consensus 50 laala~C~~~~~~~~a~~~g~~ 71 (141)
T d1ukka_ 50 AAAHAGCFSMALAASLEREGFP 71 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 4455566667777888887763
No 7
>d1qwia_ d.227.1.1 (A:) Osmotically inducible protein OsmC {Escherichia coli [TaxId: 562]}
Probab=1.39 E-value=1.1e+03 Score=14.29 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 029251 6 CLTLAATAGNNIGKVLQKKGT 26 (196)
Q Consensus 6 ~lal~aa~~~~~g~~lqk~~~ 26 (196)
+.++.+.....+..+++|++.
T Consensus 52 laAlasC~~~~~~~~a~~~~~ 72 (142)
T d1qwia_ 52 GAAHAACFSMALSLMLGEAGF 72 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 455666666777888888765
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.36 E-value=8.1e+02 Score=12.49 Aligned_cols=14 Identities=14% Similarity=-0.071 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 029251 170 EIIYGLESGILFGY 183 (196)
Q Consensus 170 a~~~G~aaG~~fg~ 183 (196)
-+++|.+++...|.
T Consensus 15 Lll~G~~~~~~~g~ 28 (39)
T d1q90r_ 15 LILAGGAGLPITTL 28 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhccchhhhhh
Confidence 35556665554443
No 9
>d1xsza2 d.129.9.1 (A:198-354) RalF, C-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=1.32 E-value=3.3e+02 Score=18.18 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=8.3
Q ss_pred HHHHHHhCCcCc
Q 029251 87 IFSHFYLKEVMN 98 (196)
Q Consensus 87 ~~~~~~l~e~l~ 98 (196)
++|.+++||+..
T Consensus 85 ifSkWf~GEksk 96 (157)
T d1xsza2 85 IFSKWLFGEQPR 96 (157)
T ss_dssp TTTHHHHCSSCE
T ss_pred HHHHHhcCCCCe
Confidence 467788888643
No 10
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=1.28 E-value=7.9e+02 Score=12.01 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHhccCchhHHHhhhh
Q 029251 60 LLMLRALSQAPVSVIQPVSG 79 (196)
Q Consensus 60 ~~~~~aL~~~plsvv~pl~~ 79 (196)
+.|.+.+.+-|+-..|.+.+
T Consensus 6 iaqlvsmgfdpleaaqalda 25 (38)
T d1z96a1 6 IAQLVSMGFDPLEAAQALDA 25 (38)
T ss_dssp HHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHhh
Done!