BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029252
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 169 bits (429), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 118/163 (72%), Gaps = 7/163 (4%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVT 85
LGGPG+GKGTQC +V+ + + HLSAGDLLRAE ++GS+ G +I+N IKEG+IVP E+T
Sbjct: 21 LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEIT 80
Query: 86 IKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
+ LL+ A+ + + KFLIDGFPR + +FE +E +F+LFFDC E+ M R+L
Sbjct: 81 LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLL 139
Query: 143 NRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
R + GR DDN+E+I+KRF F E+S+PV++Y+E K KV +V
Sbjct: 140 ERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRV 182
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 166 bits (419), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 115/159 (72%), Gaps = 4/159 (2%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LGGPGSGKGTQCANIV FG+ HLSAGDLLR E +SGS++G MI MIK G+IVPS VT+
Sbjct: 12 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV 71
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
KLL+ A++ + FL+DGFPRNEEN ++E K ++ +FVLFFDC EE M +R+L R
Sbjct: 72 KLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKR 131
Query: 145 NQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181
+ GR DDN+E+I+KRF F + V+ +Y KV+
Sbjct: 132 GESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVK 170
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 115/167 (68%), Gaps = 10/167 (5%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+ S+ G +I+ IKEGKIVP E+T
Sbjct: 9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68
Query: 86 IKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
I LL++ M+++ +KFLIDGFPRN++N + K + FVLFFDC+ E
Sbjct: 69 ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128
Query: 139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
R L R + GR DDN E++ KR + +L+S+ P++ YE GKV+K+
Sbjct: 129 ERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKI 175
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 150 bits (378), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 109/162 (67%), Gaps = 7/162 (4%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+GGPGSGKGTQC IV+ +GYTHLS GDLLRAE+ SGS G M+ ++++G++VP E +
Sbjct: 15 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVL 74
Query: 87 KLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILN 143
+L+ AM + + FLIDG+PR + FE KI +P +L+ D E M +R+L
Sbjct: 75 DMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFER--KIGQPTLLLYVDAGPETMTKRLLK 132
Query: 144 RNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
R + GR DDN ETI+KR + + +++ PV+ +YE +G VRKV
Sbjct: 133 RGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKV 174
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 105/161 (65%), Gaps = 5/161 (3%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+GGPGSGKGTQC IV+ +GYTHLS GDLLR+E+ SGS G + ++++G++VP E +
Sbjct: 15 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVL 74
Query: 87 KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
+L+ AM N FLIDG+PR + FE +P +L+ D E M +R+L R
Sbjct: 75 DMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPETMTQRLLKR 133
Query: 145 NQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
+ GR DDN ETI+KR + + +++ PV+ +YE +G VRKV
Sbjct: 134 GETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKV 174
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 106/159 (66%), Gaps = 7/159 (4%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LGGPGSGKGTQC +V+ F + HLS+GDLLRAE++SGS G ++ M++ G++VP EV +
Sbjct: 35 LGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL 94
Query: 87 KLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFDCSEEEMERRILN 143
LL++AM + N FLIDG+PR + FE ++ P V+ FD SEE M +R+L
Sbjct: 95 ALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEK--EVCPCLCVINFDVSEEVMRKRLLK 152
Query: 144 R--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
R R DDN ETI KRF+ F E + PV+++Y+ + KV
Sbjct: 153 RAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKV 191
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 107/162 (66%), Gaps = 7/162 (4%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+GGPGSGKGTQC +VE +G+THLS G+LLR E+ S SE +I+++++ G +VPS + +
Sbjct: 18 IGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVL 77
Query: 87 KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRIL- 142
+LL++AM S D FLIDG+PR E + E +I +P+ V+ DCS + M R+L
Sbjct: 78 ELLKEAMVASLGDTRGFLIDGYPR--EVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQ 135
Query: 143 -NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
+R+ DD +TI KR + + +S+PV+ YYE K ++ K+
Sbjct: 136 MSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKI 177
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 97/162 (59%), Gaps = 9/162 (5%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ + + + G+ LS GD+LR + G+ G ++ +++ G +VP ++ +
Sbjct: 10 LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL 69
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVL---FFDCSEEEMERRILN 143
+L+++ + E + + DGFPR A + + +L + EEE+ RRIL
Sbjct: 70 ELIREELAE----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILR 125
Query: 144 RN--QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
R +GR DDN ET+R+R +V+ E + P+V YYEA+G +++V
Sbjct: 126 RAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRV 167
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 98/188 (52%), Gaps = 27/188 (14%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ + + G+ H+S GD+LR ++ G+ G + ++ G++VP ++ I
Sbjct: 6 LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII 65
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSE----EEMER 139
L+++ + GN + DGFPR + A + + + ++ + VL F+ + E +
Sbjct: 66 ALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123
Query: 140 RILNRNQG------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181
R +N G REDD E I+KR +V+ E + P+++YY+ KG +R
Sbjct: 124 RRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILR 183
Query: 182 KVIFCSPI 189
+ P+
Sbjct: 184 IIDASKPV 191
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PGSGKGT + I HF HLS+GDLLR + G+E G + + I +GK++P +V
Sbjct: 13 MGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT 72
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
+L ++ +L+DGFPR A + +I+ L F+ ++ + R ++
Sbjct: 73 RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHP 132
Query: 145 NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
G REDD ET+ KR K + + + PV++YY+ KG
Sbjct: 133 ASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKG 191
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PGSGKGT + I +HF HLS+GDLLR + G+E G + + I +GK++P +V
Sbjct: 12 MGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMT 71
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
+L+ ++ +L+DGFPR A + +I+ L F+ ++ + R ++
Sbjct: 72 RLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHP 131
Query: 145 NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
G REDD ET+ KR K + + PV++YY KG
Sbjct: 132 GSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRKKG 190
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 31/178 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ I+E +G +S GD+LRA +KSGSE G ++++ GK+V E+ I
Sbjct: 6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87 KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
L+ ++ +E + FL+DGFPR A + I ++VL FD +E + RI+ R
Sbjct: 66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYY 174
R+DD ET+RKR + + + P++ YY
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 31/178 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ I+E +G +S GD+LRA +KSGSE G ++++ GK+V E+ I
Sbjct: 6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87 KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
L+ ++ +E + FL+DGFPR A + I ++VL FD +E + RI+ R
Sbjct: 66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYY 174
R+DD ET+RKR + + + P++ YY
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 27/183 (14%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PGSGKGT C I ++FG HLS+G LR IK+ +E G M + I++ +VP V
Sbjct: 33 LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 92
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
+L+ +E +L+DGFPR A + + +++ L F+ ++ + RR ++
Sbjct: 93 RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152
Query: 145 NQGR-------------------------EDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
GR EDD E + R + + + + PV++ Y+++G
Sbjct: 153 PSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGV 212
Query: 180 VRK 182
+ +
Sbjct: 213 LHQ 215
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 31/178 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG P +GKGTQ I+E +G +S GD+LRA +KSGSE G ++++ GK+V E+ I
Sbjct: 6 LGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87 KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
L+ ++ +E + FL+DGFPR A + I ++VL FD +E + RI+ R
Sbjct: 66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYY 174
R+DD ET+RKR + + + P++ YY
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Query: 28 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
G P SGKGTQC I + H+SAGDLLRAEI +GSENG + +++G++VP E+ +
Sbjct: 12 GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 71
Query: 88 LLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
++++ + + + + +L+DG+PR+ A E + +I P+ + D +E + R++ R
Sbjct: 72 MVKERLRQPDAQENGWLLDGYPRSYSQAMALETL-EIRPDTFILLDVPDELLVERVVGR 129
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 33/184 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA I+ G+E G ++ + +G +VP EVTI
Sbjct: 6 MGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRNEENRAAFE---AVTKIEPEFVLFFDCSEEEMERRIL 142
++++ + +S D FL+DGFPR A + A + E VL +EE+ R+
Sbjct: 66 GIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
R R DDN +T+ R +V + + P++ +
Sbjct: 126 GRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPLLAF 185
Query: 174 YEAK 177
Y++K
Sbjct: 186 YDSK 189
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PGSGKGT C I ++FG HLS+G LR IK+ +E G M + I++ +VP V
Sbjct: 11 LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 70
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
+L+ +E +L+DGFPR A + + +++ L F+ ++ + RR ++
Sbjct: 71 RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 130
Query: 145 NQGR-------------------------EDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
GR EDD E + R + + + + PV++ Y+++G
Sbjct: 131 PSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIELYKSRG 189
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 33/190 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ I+E + H+S GD+ RA IK+G+E G ++ + +G +VP EVTI
Sbjct: 6 MGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEA-VTKI--EPEFVLFFDCSEEEMERR-- 140
++ + + + K FL+DGFPR A ++ +T + + ++VL +EE+ +R
Sbjct: 66 GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLT 125
Query: 141 -----------------------ILNRNQG----REDDNVETIRKRFKVFLESSLPVVQY 173
I +++ G R DD ET++ R V ++ + P++ +
Sbjct: 126 GRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
Y KG ++ +
Sbjct: 186 YSQKGVLKDI 195
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 37/187 (19%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PGSGKGTQ N+ + Y HLS GDLLR + +E G I+N+I EGK+V ++ +
Sbjct: 35 LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN-----EENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140
L+ + ++ K F++DG+PRN + N+ + TK++ V +F+ +E + R
Sbjct: 95 SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDG--VFYFNVPDEVLVNR 152
Query: 141 I----LNRNQGR-------------------------EDDNVETIRKRFKVFLESSLPVV 171
I +++ GR EDDN + ++KR VF + P++
Sbjct: 153 ISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLI 212
Query: 172 QYYEAKG 178
YY+ K
Sbjct: 213 SYYKNKN 219
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 33/190 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IV +G H+S GD+ RA +K G+ G + + G +VP EVTI
Sbjct: 6 MGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTI 65
Query: 87 KLLQKAM-EESGNDKFLIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEE-MER-- 139
++++ + ++ + FL+DGFPR A E + + ++V+ D ++ MER
Sbjct: 66 GIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLT 125
Query: 140 -RILNRNQG-------------------------REDDNVETIRKRFKVFLESSLPVVQY 173
R + RN G R DDN T+ R +V ++ P+V +
Sbjct: 126 GRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDF 185
Query: 174 YEAKGKVRKV 183
YE KG +R +
Sbjct: 186 YEQKGYLRNI 195
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 31/178 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG +GKGTQ I+E +G +S GD+LRA +KSGSE G ++++ GK+V E+ I
Sbjct: 6 LGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87 KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
L+ ++ +E + FL+DGFPR A + I ++VL FD +E + RI+ R
Sbjct: 66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYY 174
R+DD ET+RKR + + + P++ YY
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ + E G +S G+L R I+ G++ G + + G +VPS++T
Sbjct: 6 LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 65
Query: 87 KLLQKAMEE-SGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
+L+ + + F++DG+PR+ E+ +A E + + + + VL F SEE + R+
Sbjct: 66 ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL- 124
Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYY 174
+ +GR DD + I R KV+ + + P+++YY
Sbjct: 125 -KGRGRADDTDDVILNRMKVYRDETAPLLEYY 155
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ + E G +S G+L R I+ G++ G + + G +VPS++T
Sbjct: 26 LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 85
Query: 87 KLLQKAMEE-SGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
+L+ + + F++DG+PR+ E+ +A E + + + + VL F SEE + R+
Sbjct: 86 ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL- 144
Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYY 174
+ +GR DD + I R KV+ + + P+++YY
Sbjct: 145 -KGRGRADDTDDVILNRMKVYRDETAPLLEYY 175
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 39/193 (20%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PGSGKGTQC I + +G HLS GD+LR IK+G++ G +++I+ G V E+ +
Sbjct: 11 IGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVL 70
Query: 87 KLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLFFDCSEEEMER 139
L+++ + + F++DGFPR E + KI E V++F+ + E+
Sbjct: 71 GLVKEKFDLGVCVNGFVLDGFPRTIPQA---EGLAKILSEIGDSLTSVIYFEIDDSEIIE 127
Query: 140 RILNRNQ-----------------------------GREDDNVETIRKRFKVFLESSLPV 170
RI R R+DDN E ++ R VF + + P+
Sbjct: 128 RISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPL 187
Query: 171 VQYYEAKGKVRKV 183
V++YE G +++V
Sbjct: 188 VKFYEDLGILKRV 200
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 33/185 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ + E+F HL+ GD+LRA + SGSE G ++ + GK+V E+ +
Sbjct: 22 LGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVV 81
Query: 87 KLLQKAMEES-GNDKFLIDGFPRN-----------EENRAAFEAVTKIE-PEFVLF---- 129
+L++K +E + FL+DGFPR E+ + ++V + P+ +L
Sbjct: 82 ELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141
Query: 130 ---------------FDCSEEEMERRILNRNQ-GREDDNVETIRKRFKVFLESSLPVVQY 173
F+ +E M+ I R DDN + ++ R + + + P+++Y
Sbjct: 142 GRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIEY 201
Query: 174 YEAKG 178
Y +G
Sbjct: 202 YRKRG 206
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 33/184 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
++++ + +S ++ FL+DGFPR + P ++V+ +EE+ R+
Sbjct: 66 GIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
R R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLAF 185
Query: 174 YEAK 177
Y++K
Sbjct: 186 YDSK 189
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 33/185 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ + ++F HL+ GD+LRA + SGSE G ++ + GK+V E+ +
Sbjct: 22 LGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVL 81
Query: 87 KLLQKAMEESG-NDKFLIDGFPRN-----------EENRAAFEAVTKIE-PEFVLF---- 129
+L++K +E + FL+DGFPR E+ + ++V + P+ +L
Sbjct: 82 ELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141
Query: 130 ---------------FDCSEEEMERRILNRNQ-GREDDNVETIRKRFKVFLESSLPVVQY 173
F+ +E M+ I R DDN + ++ R + + + P+V+Y
Sbjct: 142 GRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEY 201
Query: 174 YEAKG 178
Y +G
Sbjct: 202 YSKRG 206
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ I E FG +S GD LRA +K+G+ G + EGK+VP + I
Sbjct: 14 LGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLII 73
Query: 87 KLLQKAMEESG-NDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
L+++ ++E+ + +L DGFPR + A EA I ++VL D E+ R R
Sbjct: 74 GLVKERLKEADCANGYLFDGFPRTIAQADAXKEAGVAI--DYVLEIDVPFSEIIERXSGR 131
Query: 145 NQG-----------------------------REDDNVETIRKRFKVFLESSLPVVQYY 174
R+DD ET++KR V+ + P++ YY
Sbjct: 132 RTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 190
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 33/190 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
++++ + + ++ FL+DGFPR + +P ++V+ ++ + R+
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
R R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDF 185
Query: 174 YEAKGKVRKV 183
Y+ KG + V
Sbjct: 186 YDEKGYLVNV 195
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 33/190 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
++++ + + ++ FL+DGFPR + +P ++V+ + ++ + R+
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
R R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
Y KG + V
Sbjct: 186 YSEKGYLANV 195
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 33/190 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
++++ + + ++ FL+DGFPR + +P ++V+ + ++ + R+
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
R R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
Y KG + V
Sbjct: 186 YSEKGYLANV 195
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 33/190 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
++++ + + ++ FL+DGFPR + +P ++V+ + ++ + R+
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
R R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
Y KG + V
Sbjct: 186 YSEKGYLANV 195
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 33/190 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
++++ + + ++ FL+DGFPR + +P ++V+ + ++ + R+
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
R R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
Y KG + V
Sbjct: 186 YSEKGYLANV 195
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 33/190 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
++++ + + ++ FL+DGFPR + +P ++V+ + ++ + R+
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
R R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
Y KG + V
Sbjct: 186 YSEKGYLVNV 195
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 33/190 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
++++ + + ++ FL+DGFPR + +P ++V+ + ++ + R+
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
R R DDN ET+ KR +V ++ P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQPLLDF 185
Query: 174 YEAKGKVRKV 183
Y KG + V
Sbjct: 186 YSEKGYLANV 195
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 33/190 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGT IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
++++ + + ++ FL+DGFPR + +P ++V+ + ++ + R+
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
R R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
Y KG + V
Sbjct: 186 YSEKGYLANV 195
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 34/196 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ N+ E F HL+ GD+LR++I G++ G + ++ +G +V ++ +
Sbjct: 10 IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87 KLLQKAMEESG--NDKFLIDGFPRN-----------EENRAAFEAVT--KIEPEFVL--- 128
+++ + + + F++DGFPR +E E K++ E ++
Sbjct: 70 NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129
Query: 129 ---------------FFDCSEEEMERRILNRNQ-GREDDNVETIRKRFKVFLESSLPVVQ 172
F+ +E+M+ + R DDN + ++KR + + P+V
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189
Query: 173 YYEAKGKVRKVIFCSP 188
+Y+ G V P
Sbjct: 190 FYKKTGIWAGVDASQP 205
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 34/196 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ N+ E F HL+ GD+LR++I G++ G + ++ +G +V ++ +
Sbjct: 10 IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87 KLLQKAMEESG--NDKFLIDGFPRN-----------EENRAAFEAVT--KIEPEFVL--- 128
+++ + + + F++DGFPR +E E K++ E ++
Sbjct: 70 NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129
Query: 129 ---------------FFDCSEEEMERRILNRNQ-GREDDNVETIRKRFKVFLESSLPVVQ 172
F+ +E+M+ + R DDN + ++KR + + P+V
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189
Query: 173 YYEAKGKVRKVIFCSP 188
+Y+ G V P
Sbjct: 190 FYKKTGIWAGVDASQP 205
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 29 GP-GSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
GP GSGKGTQ + + + H+ +G + R I G+E G + I G +VP ++TI
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 88 LLQKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
++ + +E G D +L+DGFPRN + + FEA+ + ++ FV+ E + RI+ R
Sbjct: 67 MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 29 GP-GSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
GP GSGKGTQ + + + H+ +G + R I G+E G + I G +VP ++TI
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 88 LLQKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
++ + +E G D +L+DGFPRN + + FEA+ + ++ FV+ E + RI+ R
Sbjct: 67 MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 34/196 (17%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ N+ E F HL+ GD+LR++I G++ G + ++ +G +V ++ +
Sbjct: 10 IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87 KLLQKAMEESGNDK--FLIDGFPRN-----------EENRAAFEAVT--KIEPEFVL--- 128
+++ + + K F++ GFPR +E E K++ E ++
Sbjct: 70 NMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129
Query: 129 ---------------FFDCSEEEMERRILNRNQGR-EDDNVETIRKRFKVFLESSLPVVQ 172
F+ +E+M+ + + DDN + ++KR + + P+V
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVD 189
Query: 173 YYEAKGKVRKVIFCSP 188
+Y+ G V P
Sbjct: 190 FYKKTGIWAGVDASQP 205
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 27 LGGPGSGKGT---QCANIVEHFGYTH-LSAGDLLRA-EIKSGSENGTMIQ-NMIKEGKIV 80
+G GSGK T + AN +++ G++ ++A D RA I+ E+ I +IK
Sbjct: 135 VGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA 194
Query: 81 -PSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI----EPEFVLF 129
P+ V +Q A + G D LID R+E NR + + KI +P V+F
Sbjct: 195 DPAAVAYDAIQHA-KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIF 247
>pdb|1TXO|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
SerineTHREONINE PHOSPHATASE PSTPPPP AT 1.95 A.
pdb|1TXO|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
SerineTHREONINE PHOSPHATASE PSTPPPP AT 1.95 A
Length = 237
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 33 GKGTQCANIV---EHFGYTHL--SAGDLLR-AEIKSGSENGTMIQNMIKEGKIVPSEV 84
G GT I+ G H+ S G LLR E+ +++ T +Q ++ EG+I P E
Sbjct: 93 GXGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEEA 150
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp
Kinase Of Streptococcus Pneumoniae
Length = 236
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 27 LGGPGS-GKGTQCANIVEHFGYTHLSAGDLLRA 58
+ GP S GK T I + FG+T+L G + RA
Sbjct: 21 IDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53
>pdb|2CM1|A Chain A, Crystal Structure Of The Catalytic Domain Of Serine
Threonine Protein Phosphatase Pstp In Complex With 2
Manganese Ions
Length = 260
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 33 GKGTQCANIV---EHFGYTHL--SAGDLLR-AEIKSGSENGTMIQNMIKEGKIVPSEV 84
G GT I+ G H+ S G LLR E+ +++ T +Q ++ EG+I P E
Sbjct: 116 GMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEEA 173
>pdb|2PMB|A Chain A, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|B Chain B, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|C Chain C, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|D Chain D, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|3GH1|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|C Chain C, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|D Chain D, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
Length = 462
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR 157
N L+ +++E+ +F KIEPEF L F+ + E L+ NQ R + +R
Sbjct: 330 NAXPLVRQHRKDKEDAYSFNWSLKIEPEFQLPFEPNHESXANLDLHLNQ-RPEVLAANLR 388
Query: 158 KRF 160
+ F
Sbjct: 389 RAF 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,445,704
Number of Sequences: 62578
Number of extensions: 219730
Number of successful extensions: 736
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 64
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)