Query 029252
Match_columns 196
No_of_seqs 132 out of 1272
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 09:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3079 Uridylate kinase/adeny 100.0 1.2E-34 2.7E-39 196.8 19.5 177 17-194 4-185 (195)
2 PLN02674 adenylate kinase 100.0 5.9E-33 1.3E-37 202.0 20.9 175 20-194 30-237 (244)
3 PRK14531 adenylate kinase; Pro 100.0 1.4E-32 3.1E-37 194.8 20.0 172 20-193 1-175 (183)
4 PLN02459 probable adenylate ki 100.0 5.1E-32 1.1E-36 197.8 20.3 181 11-193 19-242 (261)
5 PRK14527 adenylate kinase; Pro 100.0 8.7E-32 1.9E-36 192.1 19.8 177 18-194 3-184 (191)
6 PRK14528 adenylate kinase; Pro 100.0 1.7E-31 3.6E-36 189.4 20.0 172 22-193 2-179 (186)
7 PLN02200 adenylate kinase fami 100.0 2.2E-31 4.7E-36 194.5 20.3 177 18-194 40-216 (234)
8 PRK13808 adenylate kinase; Pro 100.0 2.2E-31 4.8E-36 200.7 19.6 172 23-194 2-185 (333)
9 TIGR01351 adk adenylate kinase 100.0 5.5E-31 1.2E-35 190.6 19.5 170 24-194 2-203 (210)
10 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 7.7E-31 1.7E-35 186.2 19.5 171 23-193 1-175 (183)
11 PRK14532 adenylate kinase; Pro 100.0 1.1E-30 2.5E-35 186.1 20.0 171 23-193 2-178 (188)
12 PRK14529 adenylate kinase; Pro 100.0 1E-30 2.2E-35 188.3 18.2 171 23-193 2-215 (223)
13 PRK00279 adk adenylate kinase; 100.0 3.7E-30 7.9E-35 186.9 19.0 172 23-194 2-206 (215)
14 PRK02496 adk adenylate kinase; 100.0 2E-29 4.4E-34 179.0 20.4 171 22-194 2-176 (184)
15 PTZ00088 adenylate kinase 1; P 100.0 2.9E-29 6.3E-34 182.2 20.1 173 19-193 4-222 (229)
16 PRK14526 adenylate kinase; Pro 100.0 2.4E-29 5.2E-34 180.8 19.1 170 23-194 2-201 (211)
17 cd01428 ADK Adenylate kinase ( 100.0 1.6E-28 3.5E-33 175.8 20.5 168 24-192 2-194 (194)
18 TIGR01360 aden_kin_iso1 adenyl 100.0 1.6E-27 3.5E-32 169.8 21.2 172 21-193 3-178 (188)
19 PRK14530 adenylate kinase; Pro 100.0 6.3E-28 1.4E-32 175.2 19.3 169 21-194 3-205 (215)
20 PF00406 ADK: Adenylate kinase 100.0 1E-27 2.2E-32 165.1 18.2 146 26-178 1-150 (151)
21 COG0563 Adk Adenylate kinase a 100.0 1.6E-26 3.6E-31 161.7 17.1 165 22-193 1-170 (178)
22 PLN02842 nucleotide kinase 99.9 4.1E-26 8.8E-31 180.0 17.5 166 25-193 1-193 (505)
23 KOG3078 Adenylate kinase [Nucl 99.9 1.1E-22 2.4E-27 145.3 15.5 172 20-193 14-215 (235)
24 PHA02530 pseT polynucleotide k 99.8 1.4E-18 3.1E-23 132.4 12.6 166 20-192 1-172 (300)
25 PRK01184 hypothetical protein; 99.8 4.9E-17 1.1E-21 115.4 18.2 159 22-192 2-168 (184)
26 PRK13973 thymidylate kinase; P 99.8 1.5E-16 3.2E-21 115.4 17.0 164 20-193 2-197 (213)
27 PRK06217 hypothetical protein; 99.7 1.5E-16 3.2E-21 112.8 14.2 103 22-144 2-104 (183)
28 PRK06762 hypothetical protein; 99.7 2.3E-16 5E-21 110.2 14.9 150 20-193 1-155 (166)
29 PRK03839 putative kinase; Prov 99.7 1.6E-16 3.4E-21 112.4 14.2 140 23-193 2-144 (180)
30 PRK08118 topology modulation p 99.7 2.1E-16 4.5E-21 110.2 14.0 141 22-187 2-158 (167)
31 PRK13949 shikimate kinase; Pro 99.7 6.6E-16 1.4E-20 107.8 16.0 151 23-192 3-161 (169)
32 PRK04040 adenylate kinase; Pro 99.7 2.7E-16 5.9E-21 111.5 12.4 137 21-164 2-152 (188)
33 COG1102 Cmk Cytidylate kinase 99.7 3.2E-15 6.9E-20 100.3 16.0 111 22-144 1-111 (179)
34 PLN02924 thymidylate kinase 99.7 1E-15 2.2E-20 111.0 14.7 160 18-193 13-194 (220)
35 PRK13975 thymidylate kinase; P 99.7 2.3E-15 5E-20 107.9 16.1 156 20-193 1-181 (196)
36 COG0703 AroK Shikimate kinase 99.7 7.6E-16 1.6E-20 105.7 12.7 111 21-144 2-115 (172)
37 PRK13974 thymidylate kinase; P 99.7 4.3E-16 9.3E-21 112.9 12.0 164 21-193 3-197 (212)
38 PF13671 AAA_33: AAA domain; P 99.7 5.5E-16 1.2E-20 105.6 11.7 113 23-144 1-118 (143)
39 PRK08233 hypothetical protein; 99.7 3.9E-16 8.6E-21 110.5 11.3 160 20-193 2-168 (182)
40 TIGR00041 DTMP_kinase thymidyl 99.7 2.5E-15 5.5E-20 107.6 14.7 160 21-194 3-193 (195)
41 PRK08356 hypothetical protein; 99.7 9E-16 2E-20 109.9 12.2 115 22-144 6-135 (195)
42 COG0125 Tmk Thymidylate kinase 99.7 7.6E-15 1.6E-19 104.9 16.2 163 20-193 2-194 (208)
43 PRK03731 aroL shikimate kinase 99.7 5.6E-15 1.2E-19 103.7 14.5 154 22-193 3-161 (171)
44 PRK13948 shikimate kinase; Pro 99.7 3.1E-15 6.8E-20 105.2 12.7 112 20-144 9-123 (182)
45 cd02030 NDUO42 NADH:Ubiquinone 99.7 4.9E-15 1.1E-19 107.8 13.9 168 23-193 1-212 (219)
46 TIGR01313 therm_gnt_kin carboh 99.7 6.9E-15 1.5E-19 102.4 14.0 149 24-193 1-154 (163)
47 PRK00081 coaE dephospho-CoA ki 99.6 4.2E-15 9E-20 106.2 11.9 153 22-192 3-183 (194)
48 PRK14730 coaE dephospho-CoA ki 99.6 9.5E-15 2.1E-19 104.3 13.2 154 22-192 2-184 (195)
49 PRK13946 shikimate kinase; Pro 99.6 1.1E-14 2.4E-19 103.3 13.4 114 19-144 8-123 (184)
50 PRK00698 tmk thymidylate kinas 99.6 2.4E-14 5.2E-19 103.3 15.2 159 20-193 2-193 (205)
51 PRK00625 shikimate kinase; Pro 99.6 2.9E-14 6.4E-19 99.6 14.9 112 23-144 2-116 (173)
52 PRK04182 cytidylate kinase; Pr 99.6 2.9E-14 6.3E-19 100.8 14.8 110 22-144 1-112 (180)
53 PRK12339 2-phosphoglycerate ki 99.6 6.5E-14 1.4E-18 99.9 16.4 160 20-186 2-182 (197)
54 cd01672 TMPK Thymidine monopho 99.6 3.2E-14 6.8E-19 102.1 14.8 160 22-193 1-191 (200)
55 TIGR02173 cyt_kin_arch cytidyl 99.6 6.4E-14 1.4E-18 98.2 15.9 112 22-144 1-112 (171)
56 COG1936 Predicted nucleotide k 99.6 6.7E-15 1.5E-19 100.1 10.1 144 22-193 1-147 (180)
57 PRK07261 topology modulation p 99.6 3.6E-15 7.9E-20 104.4 9.1 99 22-144 1-99 (171)
58 cd02021 GntK Gluconate kinase 99.6 6.1E-14 1.3E-18 96.3 14.6 130 23-164 1-136 (150)
59 PRK13947 shikimate kinase; Pro 99.6 4.1E-14 8.9E-19 99.3 12.8 110 23-144 3-114 (171)
60 cd02022 DPCK Dephospho-coenzym 99.6 4.2E-14 9.2E-19 99.9 12.8 150 23-190 1-178 (179)
61 PRK14733 coaE dephospho-CoA ki 99.6 1.2E-13 2.5E-18 98.8 15.0 156 19-191 4-187 (204)
62 cd01673 dNK Deoxyribonucleosid 99.6 8E-14 1.7E-18 99.7 14.0 159 23-190 1-190 (193)
63 PRK00131 aroK shikimate kinase 99.6 6.3E-14 1.4E-18 98.5 13.2 113 20-144 3-117 (175)
64 PRK14734 coaE dephospho-CoA ki 99.6 1.5E-14 3.2E-19 103.7 9.8 153 22-192 2-184 (200)
65 PF02223 Thymidylate_kin: Thym 99.6 4.7E-14 1E-18 100.3 12.3 154 26-193 1-183 (186)
66 PRK06547 hypothetical protein; 99.6 5.6E-15 1.2E-19 103.2 7.1 126 16-144 10-138 (172)
67 PRK07933 thymidylate kinase; V 99.6 3.3E-14 7.1E-19 102.9 11.2 164 22-193 1-204 (213)
68 COG0194 Gmk Guanylate kinase [ 99.6 4.1E-14 8.9E-19 97.6 11.0 148 20-185 3-167 (191)
69 cd02020 CMPK Cytidine monophos 99.6 1.5E-14 3.2E-19 98.9 8.9 144 23-185 1-146 (147)
70 COG1428 Deoxynucleoside kinase 99.6 7.1E-14 1.5E-18 98.3 11.4 30 21-50 4-33 (216)
71 cd00464 SK Shikimate kinase (S 99.6 6.1E-13 1.3E-17 91.6 16.1 109 24-144 2-112 (154)
72 PF13207 AAA_17: AAA domain; P 99.6 6.1E-15 1.3E-19 97.6 5.8 106 23-144 1-110 (121)
73 TIGR00152 dephospho-CoA kinase 99.6 1.1E-13 2.5E-18 98.5 12.5 153 23-192 1-182 (188)
74 PRK10078 ribose 1,5-bisphospho 99.5 1.3E-13 2.9E-18 97.9 12.2 153 21-193 2-167 (186)
75 PRK05057 aroK shikimate kinase 99.5 2.1E-13 4.6E-18 95.6 13.0 111 21-144 4-117 (172)
76 TIGR03574 selen_PSTK L-seryl-t 99.5 7.2E-14 1.6E-18 103.8 10.9 145 23-187 1-152 (249)
77 PF01121 CoaE: Dephospho-CoA k 99.5 1.6E-13 3.4E-18 96.5 11.9 152 22-191 1-180 (180)
78 KOG3347 Predicted nucleotide k 99.5 6.2E-14 1.3E-18 92.8 9.0 107 21-144 7-113 (176)
79 PRK14731 coaE dephospho-CoA ki 99.5 2.5E-13 5.5E-18 98.0 12.9 155 20-192 4-192 (208)
80 COG0572 Udk Uridine kinase [Nu 99.5 8.2E-14 1.8E-18 99.1 10.1 147 19-175 6-176 (218)
81 COG0237 CoaE Dephospho-CoA kin 99.5 6.5E-13 1.4E-17 94.6 14.2 153 20-191 1-181 (201)
82 PLN02422 dephospho-CoA kinase 99.5 7.9E-13 1.7E-17 96.1 14.7 152 23-192 3-184 (232)
83 cd00227 CPT Chloramphenicol (C 99.5 6.3E-13 1.4E-17 93.6 13.6 118 21-144 2-131 (175)
84 KOG3354 Gluconate kinase [Carb 99.5 1.8E-13 3.9E-18 91.2 10.0 152 21-193 12-179 (191)
85 COG3265 GntK Gluconate kinase 99.5 4.1E-13 9E-18 88.9 10.1 144 28-193 2-150 (161)
86 PTZ00451 dephospho-CoA kinase; 99.5 9.1E-13 2E-17 96.6 12.9 155 22-192 2-197 (244)
87 KOG3877 NADH:ubiquinone oxidor 99.5 6.9E-13 1.5E-17 96.5 11.9 168 19-190 69-283 (393)
88 PRK14732 coaE dephospho-CoA ki 99.5 4.8E-13 1E-17 95.5 11.1 152 23-192 1-180 (196)
89 PTZ00301 uridine kinase; Provi 99.5 1.9E-13 4.2E-18 98.3 9.1 115 20-144 2-147 (210)
90 PRK14021 bifunctional shikimat 99.5 7.4E-13 1.6E-17 108.0 13.4 117 19-144 4-123 (542)
91 PRK09825 idnK D-gluconate kina 99.5 3.3E-12 7.2E-17 89.8 14.5 151 21-192 3-158 (176)
92 COG0645 Predicted kinase [Gene 99.5 5.3E-12 1.1E-16 85.9 14.7 133 22-162 2-142 (170)
93 PRK14737 gmk guanylate kinase; 99.5 1.6E-12 3.4E-17 92.1 12.7 135 19-164 2-153 (186)
94 PRK14738 gmk guanylate kinase; 99.5 3.4E-13 7.3E-18 97.3 9.0 159 18-193 10-185 (206)
95 TIGR01663 PNK-3'Pase polynucle 99.5 3.5E-12 7.6E-17 102.8 15.5 101 18-144 366-468 (526)
96 PRK05480 uridine/cytidine kina 99.5 6.6E-13 1.4E-17 96.1 10.4 118 19-144 4-146 (209)
97 PRK08154 anaerobic benzoate ca 99.5 1.7E-12 3.6E-17 99.1 13.1 117 17-144 129-247 (309)
98 PRK13976 thymidylate kinase; P 99.5 8E-12 1.7E-16 90.1 15.8 115 22-144 1-145 (209)
99 PRK12338 hypothetical protein; 99.5 4.6E-12 9.9E-17 95.8 14.9 124 20-144 3-150 (319)
100 PLN02199 shikimate kinase 99.5 8E-12 1.7E-16 93.1 15.8 112 20-143 101-214 (303)
101 PRK06696 uridine kinase; Valid 99.4 1.1E-12 2.4E-17 95.9 10.2 120 18-144 19-167 (223)
102 COG4088 Predicted nucleotide k 99.4 4.3E-12 9.4E-17 88.8 12.4 129 22-164 2-139 (261)
103 COG4639 Predicted kinase [Gene 99.4 1.5E-11 3.3E-16 82.3 14.3 125 21-159 2-129 (168)
104 PRK11545 gntK gluconate kinase 99.4 4.5E-12 9.8E-17 88.1 12.2 145 27-192 1-150 (163)
105 KOG3220 Similar to bacterial d 99.4 8.9E-12 1.9E-16 86.7 13.1 154 22-192 2-184 (225)
106 TIGR00235 udk uridine kinase. 99.4 3.2E-12 6.9E-17 92.4 11.4 121 18-144 3-146 (207)
107 PRK03333 coaE dephospho-CoA ki 99.4 3.2E-12 6.8E-17 100.6 12.1 154 22-192 2-182 (395)
108 TIGR02322 phosphon_PhnN phosph 99.4 1.8E-12 3.8E-17 91.6 9.7 152 22-193 2-169 (179)
109 COG0283 Cmk Cytidylate kinase 99.4 1E-11 2.2E-16 87.7 13.3 38 22-59 5-42 (222)
110 PRK13477 bifunctional pantoate 99.4 8.1E-12 1.8E-16 100.3 13.8 40 20-59 283-322 (512)
111 PLN02348 phosphoribulokinase 99.4 3E-12 6.5E-17 98.8 10.8 133 18-162 46-221 (395)
112 COG2019 AdkA Archaeal adenylat 99.4 1.3E-11 2.8E-16 83.6 11.9 131 21-164 4-151 (189)
113 TIGR00017 cmk cytidylate kinas 99.4 1.2E-11 2.6E-16 89.6 12.6 165 20-193 1-210 (217)
114 cd02024 NRK1 Nicotinamide ribo 99.4 1.1E-12 2.4E-17 92.6 6.9 36 23-58 1-37 (187)
115 PF01202 SKI: Shikimate kinase 99.4 5.2E-12 1.1E-16 87.4 10.0 102 30-144 1-105 (158)
116 PF06414 Zeta_toxin: Zeta toxi 99.4 2.1E-12 4.6E-17 92.7 8.3 158 17-187 11-190 (199)
117 cd02023 UMPK Uridine monophosp 99.4 4.5E-12 9.8E-17 91.0 9.9 35 23-57 1-38 (198)
118 cd02025 PanK Pantothenate kina 99.4 1.6E-11 3.5E-16 89.3 12.1 170 23-193 1-219 (220)
119 PRK13951 bifunctional shikimat 99.4 2.1E-11 4.5E-16 98.2 13.8 112 23-149 2-115 (488)
120 PRK07667 uridine kinase; Provi 99.4 3.6E-12 7.7E-17 91.1 8.3 118 20-144 16-159 (193)
121 PF13238 AAA_18: AAA domain; P 99.4 5.7E-12 1.2E-16 84.1 8.5 106 24-144 1-112 (129)
122 PF00485 PRK: Phosphoribulokin 99.4 1.1E-12 2.4E-17 93.9 5.3 110 23-144 1-147 (194)
123 TIGR03263 guanyl_kin guanylate 99.4 8.2E-12 1.8E-16 88.3 9.7 133 22-164 2-149 (180)
124 smart00072 GuKc Guanylate kina 99.4 5.1E-12 1.1E-16 89.7 8.5 133 21-164 2-151 (184)
125 PRK05541 adenylylsulfate kinas 99.3 4.1E-11 8.8E-16 84.5 12.8 112 19-143 5-121 (176)
126 PF01583 APS_kinase: Adenylyls 99.3 2E-11 4.4E-16 83.2 10.3 112 20-142 1-118 (156)
127 PRK04220 2-phosphoglycerate ki 99.3 1.8E-10 4E-15 86.4 15.0 122 19-144 90-235 (301)
128 PRK00300 gmk guanylate kinase; 99.3 9.1E-11 2E-15 84.7 13.0 137 20-166 4-155 (205)
129 PRK00023 cmk cytidylate kinase 99.3 7.7E-11 1.7E-15 86.0 12.5 38 21-58 4-41 (225)
130 PF08433 KTI12: Chromatin asso 99.3 5.1E-11 1.1E-15 88.9 11.7 129 22-164 2-138 (270)
131 COG0529 CysC Adenylylsulfate k 99.3 1.3E-10 2.7E-15 79.6 12.2 119 14-142 16-139 (197)
132 cd02027 APSK Adenosine 5'-phos 99.3 1.5E-10 3.3E-15 79.3 12.8 109 23-143 1-116 (149)
133 PRK07429 phosphoribulokinase; 99.3 1E-10 2.2E-15 89.6 13.1 141 18-164 5-165 (327)
134 PRK12337 2-phosphoglycerate ki 99.3 7.1E-10 1.5E-14 87.5 18.0 123 19-144 253-404 (475)
135 KOG3327 Thymidylate kinase/ade 99.3 1.6E-10 3.4E-15 79.5 12.2 162 19-193 3-186 (208)
136 PF01591 6PF2K: 6-phosphofruct 99.3 1.3E-10 2.8E-15 84.0 12.2 153 18-171 9-179 (222)
137 PF07931 CPT: Chloramphenicol 99.3 1.4E-10 3E-15 80.8 12.0 113 22-144 2-130 (174)
138 PRK09270 nucleoside triphospha 99.3 1.4E-10 3E-15 85.1 12.2 136 18-161 30-197 (229)
139 PRK15453 phosphoribulokinase; 99.3 3.4E-11 7.4E-16 89.2 8.6 39 19-57 3-46 (290)
140 TIGR00455 apsK adenylylsulfate 99.2 4.5E-10 9.8E-15 79.7 13.7 113 18-141 15-133 (184)
141 COG4185 Uncharacterized protei 99.2 5.6E-10 1.2E-14 75.1 12.9 159 20-194 1-165 (187)
142 PRK11860 bifunctional 3-phosph 99.2 2.9E-10 6.3E-15 95.2 14.3 164 21-194 442-647 (661)
143 cd02028 UMPK_like Uridine mono 99.2 2.4E-11 5.2E-16 85.7 6.7 110 23-144 1-139 (179)
144 PRK00889 adenylylsulfate kinas 99.2 6.2E-10 1.3E-14 78.3 13.7 109 20-141 3-117 (175)
145 PHA03132 thymidine kinase; Pro 99.2 8.9E-10 1.9E-14 89.4 15.3 28 21-48 257-284 (580)
146 PRK05439 pantothenate kinase; 99.2 3.5E-10 7.6E-15 85.7 12.3 126 18-144 83-237 (311)
147 cd02026 PRK Phosphoribulokinas 99.2 1.8E-10 3.8E-15 86.4 10.0 134 23-162 1-154 (273)
148 TIGR03575 selen_PSTK_euk L-ser 99.2 7.2E-10 1.6E-14 85.0 13.2 134 23-161 1-189 (340)
149 COG3709 Uncharacterized compon 99.2 3.5E-10 7.5E-15 76.3 10.0 155 20-192 4-172 (192)
150 PRK05416 glmZ(sRNA)-inactivati 99.2 2.1E-09 4.6E-14 81.0 15.1 97 20-144 5-106 (288)
151 PRK03846 adenylylsulfate kinas 99.2 1.2E-09 2.5E-14 78.5 12.3 112 17-140 20-138 (198)
152 TIGR00554 panK_bact pantothena 99.1 1.1E-09 2.4E-14 82.4 11.9 126 18-144 59-217 (290)
153 KOG4235 Mitochondrial thymidin 99.1 1E-08 2.3E-13 71.3 14.1 66 120-190 150-221 (244)
154 PLN02772 guanylate kinase 99.1 2E-09 4.3E-14 83.4 11.4 136 20-165 134-285 (398)
155 PF03668 ATP_bind_2: P-loop AT 99.1 7E-09 1.5E-13 77.0 13.8 95 22-144 2-102 (284)
156 PRK09518 bifunctional cytidyla 99.1 1E-09 2.2E-14 92.7 10.1 37 23-59 3-39 (712)
157 cd02029 PRK_like Phosphoribulo 99.1 1.4E-09 3.1E-14 80.1 9.6 35 23-57 1-40 (277)
158 PLN02318 phosphoribulokinase/u 99.1 8.1E-10 1.8E-14 89.4 9.0 145 19-176 63-226 (656)
159 PRK05537 bifunctional sulfate 99.1 2.2E-09 4.8E-14 88.1 11.7 111 19-142 390-510 (568)
160 COG2074 2-phosphoglycerate kin 99.1 1.8E-08 3.8E-13 73.0 14.7 122 18-144 86-230 (299)
161 KOG3308 Uncharacterized protei 99.0 1.8E-09 4E-14 75.4 8.9 115 21-144 4-148 (225)
162 PRK12269 bifunctional cytidyla 99.0 7.3E-09 1.6E-13 88.2 14.2 40 20-59 33-72 (863)
163 PRK05506 bifunctional sulfate 99.0 6.7E-09 1.4E-13 86.8 12.7 112 18-141 457-575 (632)
164 cd02019 NK Nucleoside/nucleoti 99.0 1.6E-09 3.4E-14 64.2 6.3 23 23-45 1-23 (69)
165 PF00625 Guanylate_kin: Guanyl 99.0 2.3E-09 5E-14 76.0 7.9 133 21-164 2-151 (183)
166 PHA00729 NTP-binding motif con 98.9 5E-08 1.1E-12 70.6 12.4 111 20-144 16-139 (226)
167 KOG3062 RNA polymerase II elon 98.8 1.9E-08 4.2E-13 71.5 7.2 132 22-163 2-142 (281)
168 KOG0733 Nuclear AAA ATPase (VC 98.8 3.1E-08 6.6E-13 79.9 8.7 128 15-144 217-372 (802)
169 PLN02165 adenylate isopentenyl 98.8 5.3E-08 1.2E-12 74.3 9.5 37 19-55 41-77 (334)
170 PHA03136 thymidine kinase; Pro 98.8 3.2E-07 7E-12 70.7 13.0 30 120-151 188-217 (378)
171 PF08303 tRNA_lig_kinase: tRNA 98.8 3.6E-07 7.9E-12 62.4 11.7 125 24-170 2-149 (168)
172 COG1660 Predicted P-loop-conta 98.7 5.8E-07 1.3E-11 65.5 11.0 93 22-144 2-103 (286)
173 COG1072 CoaA Panthothenate kin 98.7 7.8E-08 1.7E-12 70.7 6.6 126 17-144 78-231 (283)
174 cd00071 GMPK Guanosine monopho 98.6 1.8E-07 3.9E-12 63.1 6.8 108 23-137 1-124 (137)
175 PRK06761 hypothetical protein; 98.5 8.4E-07 1.8E-11 66.6 9.4 28 20-47 2-29 (282)
176 PF13173 AAA_14: AAA domain 98.5 1.6E-06 3.4E-11 57.9 9.2 99 21-140 2-104 (128)
177 KOG0635 Adenosine 5'-phosphosu 98.5 1.1E-06 2.5E-11 58.9 8.0 118 14-141 24-146 (207)
178 KOG0730 AAA+-type ATPase [Post 98.5 8.4E-06 1.8E-10 66.7 14.2 128 14-144 461-613 (693)
179 KOG2702 Predicted panthothenat 98.5 1E-06 2.2E-11 63.3 7.8 125 15-144 113-279 (323)
180 PF13189 Cytidylate_kin2: Cyti 98.5 1.6E-06 3.5E-11 61.2 8.6 114 23-144 1-134 (179)
181 KOG0738 AAA+-type ATPase [Post 98.4 2.1E-06 4.6E-11 66.1 9.6 38 22-59 246-285 (491)
182 PTZ00322 6-phosphofructo-2-kin 98.4 1.4E-05 3E-10 67.5 15.2 39 20-58 214-257 (664)
183 PF00004 AAA: ATPase family as 98.4 1.8E-07 3.9E-12 62.4 3.2 27 24-50 1-27 (132)
184 TIGR03707 PPK2_P_aer polyphosp 98.4 2.5E-05 5.5E-10 56.9 14.3 150 18-188 28-206 (230)
185 PRK12724 flagellar biosynthesi 98.4 7.1E-06 1.5E-10 64.7 11.9 108 20-134 222-344 (432)
186 KOG0739 AAA+-type ATPase [Post 98.4 6.2E-06 1.3E-10 61.7 10.8 40 22-61 167-208 (439)
187 PRK00091 miaA tRNA delta(2)-is 98.4 3.1E-07 6.8E-12 69.9 4.1 36 20-55 3-38 (307)
188 PHA03135 thymidine kinase; Pro 98.4 1.5E-05 3.3E-10 60.8 12.7 25 21-45 10-34 (343)
189 COG1222 RPT1 ATP-dependent 26S 98.4 9.5E-07 2.1E-11 67.3 5.9 64 4-67 166-233 (406)
190 PLN02840 tRNA dimethylallyltra 98.4 5.3E-07 1.1E-11 71.0 4.5 38 17-54 17-54 (421)
191 COG1618 Predicted nucleotide k 98.3 7.6E-07 1.7E-11 60.4 3.9 28 19-46 3-30 (179)
192 TIGR03708 poly_P_AMP_trns poly 98.3 6E-05 1.3E-09 60.9 15.2 146 18-187 37-214 (493)
193 CHL00195 ycf46 Ycf46; Provisio 98.3 1.9E-05 4.2E-10 64.0 12.3 34 18-51 256-289 (489)
194 KOG0744 AAA+-type ATPase [Post 98.3 1.7E-06 3.7E-11 65.2 5.7 43 20-62 176-229 (423)
195 PF13401 AAA_22: AAA domain; P 98.2 3.6E-06 7.7E-11 56.1 6.0 26 20-45 3-28 (131)
196 PRK08099 bifunctional DNA-bind 98.2 1E-06 2.2E-11 69.6 3.7 46 4-49 199-247 (399)
197 TIGR03709 PPK2_rel_1 polyphosp 98.2 9.8E-05 2.1E-09 55.0 13.9 151 19-188 54-231 (264)
198 PF05496 RuvB_N: Holliday junc 98.2 1.5E-06 3.2E-11 62.7 3.5 28 22-49 51-78 (233)
199 PF01745 IPT: Isopentenyl tran 98.2 7.9E-06 1.7E-10 58.3 7.1 120 22-144 2-138 (233)
200 PHA02575 1 deoxynucleoside mon 98.2 2.7E-06 5.9E-11 61.3 4.9 39 22-61 1-40 (227)
201 smart00382 AAA ATPases associa 98.2 1.6E-06 3.6E-11 58.0 3.5 27 21-47 2-28 (148)
202 PLN02748 tRNA dimethylallyltra 98.2 2.1E-06 4.6E-11 68.8 4.4 36 19-54 20-55 (468)
203 smart00763 AAA_PrkA PrkA AAA d 98.2 2.2E-06 4.7E-11 66.2 4.2 29 19-47 76-104 (361)
204 PRK09087 hypothetical protein; 98.2 2.3E-05 5.1E-10 57.4 9.4 38 21-58 44-81 (226)
205 TIGR00174 miaA tRNA isopenteny 98.2 1.7E-06 3.6E-11 65.2 3.3 32 23-54 1-32 (287)
206 PHA03138 thymidine kinase; Pro 98.2 9.2E-05 2E-09 56.7 12.6 25 21-45 12-36 (340)
207 PF03976 PPK2: Polyphosphate k 98.2 2E-05 4.3E-10 57.5 8.7 146 20-187 30-205 (228)
208 PRK14974 cell division protein 98.2 9.6E-06 2.1E-10 62.6 7.4 27 19-45 138-164 (336)
209 CHL00181 cbbX CbbX; Provisiona 98.1 9.8E-05 2.1E-09 56.1 12.8 26 20-45 58-83 (287)
210 PHA03134 thymidine kinase; Pro 98.1 0.00041 8.8E-09 53.2 15.7 26 125-152 165-190 (340)
211 PF13521 AAA_28: AAA domain; P 98.1 1.9E-06 4.1E-11 59.9 3.0 37 23-62 1-37 (163)
212 PF07728 AAA_5: AAA domain (dy 98.1 3.2E-06 7E-11 57.1 4.0 26 24-49 2-27 (139)
213 PRK09169 hypothetical protein; 98.1 0.00011 2.3E-09 67.6 14.2 108 21-144 2110-2220(2316)
214 TIGR00390 hslU ATP-dependent p 98.1 2.7E-06 5.9E-11 66.9 3.9 34 20-53 46-79 (441)
215 PRK10751 molybdopterin-guanine 98.1 4.3E-06 9.2E-11 58.3 4.2 30 17-46 2-31 (173)
216 TIGR00150 HI0065_YjeE ATPase, 98.1 4.8E-06 1E-10 55.5 4.1 28 20-47 21-48 (133)
217 PLN02796 D-glycerate 3-kinase 98.1 2.9E-06 6.2E-11 65.2 3.3 38 19-56 98-140 (347)
218 TIGR01425 SRP54_euk signal rec 98.1 0.0001 2.2E-09 58.7 11.7 27 19-45 98-124 (429)
219 TIGR00959 ffh signal recogniti 98.1 7.2E-05 1.5E-09 59.7 10.8 27 19-45 97-123 (428)
220 COG0552 FtsY Signal recognitio 98.1 0.00016 3.5E-09 55.0 12.1 101 18-119 136-243 (340)
221 PRK10867 signal recognition pa 98.0 5.9E-05 1.3E-09 60.2 10.1 27 19-45 98-124 (433)
222 PRK06620 hypothetical protein; 98.0 0.00021 4.5E-09 51.9 12.2 30 22-51 45-74 (214)
223 TIGR01243 CDC48 AAA family ATP 98.0 5.7E-05 1.2E-09 64.7 10.6 33 19-51 485-517 (733)
224 COG0324 MiaA tRNA delta(2)-iso 98.0 6.8E-06 1.5E-10 62.2 4.4 37 20-56 2-38 (308)
225 PRK05201 hslU ATP-dependent pr 98.0 5.1E-06 1.1E-10 65.4 3.8 33 21-53 50-82 (443)
226 TIGR01241 FtsH_fam ATP-depende 98.0 0.00014 3E-09 59.5 12.3 33 19-51 86-118 (495)
227 COG1126 GlnQ ABC-type polar am 98.0 5.3E-06 1.2E-10 59.2 3.4 27 18-45 25-51 (240)
228 PRK00771 signal recognition pa 98.0 1.3E-05 2.7E-10 64.1 5.9 27 19-45 93-119 (437)
229 TIGR03689 pup_AAA proteasome A 98.0 7.3E-05 1.6E-09 60.8 10.2 29 19-47 214-242 (512)
230 PRK12723 flagellar biosynthesi 98.0 4E-05 8.7E-10 60.3 8.5 27 19-45 172-198 (388)
231 PLN00020 ribulose bisphosphate 98.0 6.6E-06 1.4E-10 63.6 4.0 41 18-58 145-187 (413)
232 PLN03046 D-glycerate 3-kinase; 98.0 5.2E-06 1.1E-10 65.2 3.4 38 19-56 210-252 (460)
233 COG0464 SpoVK ATPases of the A 98.0 0.00012 2.7E-09 59.8 11.5 34 18-51 273-306 (494)
234 TIGR02881 spore_V_K stage V sp 98.0 7.9E-06 1.7E-10 61.2 4.2 27 19-45 40-66 (261)
235 PRK11889 flhF flagellar biosyn 98.0 0.00014 3E-09 57.2 10.8 26 20-45 240-265 (436)
236 PRK05800 cobU adenosylcobinami 98.0 8.6E-06 1.9E-10 56.9 3.8 31 22-52 2-34 (170)
237 PRK12402 replication factor C 98.0 0.00067 1.5E-08 52.6 14.6 24 22-45 37-60 (337)
238 cd00009 AAA The AAA+ (ATPases 98.0 1.4E-05 3.1E-10 53.7 4.8 26 20-45 18-43 (151)
239 PRK12377 putative replication 98.0 0.00042 9.1E-09 51.4 12.7 38 22-59 102-144 (248)
240 PF00448 SRP54: SRP54-type pro 98.0 8.7E-06 1.9E-10 58.3 3.7 25 21-45 1-25 (196)
241 PRK03992 proteasome-activating 97.9 1.3E-05 2.8E-10 63.5 4.8 40 18-57 162-203 (389)
242 PTZ00454 26S protease regulato 97.9 1.4E-05 3E-10 63.3 4.9 35 17-51 175-209 (398)
243 PF06309 Torsin: Torsin; Inte 97.9 1.4E-05 3E-10 52.4 4.1 30 16-45 48-77 (127)
244 CHL00176 ftsH cell division pr 97.9 0.0004 8.7E-09 58.3 13.6 33 19-51 214-246 (638)
245 PF13245 AAA_19: Part of AAA d 97.9 1.4E-05 3.1E-10 48.0 3.8 25 21-45 10-35 (76)
246 KOG0731 AAA+-type ATPase conta 97.9 6E-05 1.3E-09 63.3 8.4 128 15-143 338-492 (774)
247 PHA03133 thymidine kinase; Pro 97.9 0.00094 2E-08 51.5 14.2 25 22-46 41-65 (368)
248 PF03266 NTPase_1: NTPase; In 97.9 1.3E-05 2.8E-10 56.0 3.8 22 24-45 2-23 (168)
249 PRK14956 DNA polymerase III su 97.9 0.00057 1.2E-08 55.1 13.5 27 21-47 40-66 (484)
250 KOG0733 Nuclear AAA ATPase (VC 97.9 6E-05 1.3E-09 61.5 8.0 45 7-51 529-575 (802)
251 KOG0707 Guanylate kinase [Nucl 97.9 3.7E-05 8.1E-10 55.4 6.2 26 22-47 38-63 (231)
252 TIGR01650 PD_CobS cobaltochela 97.9 1.2E-05 2.5E-10 61.5 3.8 29 22-50 65-93 (327)
253 TIGR01223 Pmev_kin_anim phosph 97.9 0.00028 6.1E-09 49.0 10.1 115 23-144 1-135 (182)
254 COG4619 ABC-type uncharacteriz 97.9 1.1E-05 2.5E-10 55.4 3.2 29 17-45 25-53 (223)
255 PF00910 RNA_helicase: RNA hel 97.9 1.1E-05 2.3E-10 52.1 3.0 23 24-46 1-23 (107)
256 COG1116 TauB ABC-type nitrate/ 97.9 1.3E-05 2.8E-10 58.5 3.6 27 17-43 25-51 (248)
257 TIGR01242 26Sp45 26S proteasom 97.9 1.7E-05 3.7E-10 62.3 4.6 32 19-50 154-185 (364)
258 PF05729 NACHT: NACHT domain 97.9 1.4E-05 3E-10 55.3 3.7 24 22-45 1-24 (166)
259 PF06745 KaiC: KaiC; InterPro 97.9 6.4E-05 1.4E-09 55.1 7.3 25 19-43 17-41 (226)
260 COG1136 SalX ABC-type antimicr 97.9 1.4E-05 3E-10 58.0 3.6 26 18-43 28-53 (226)
261 COG2256 MGS1 ATPase related to 97.9 1.6E-05 3.5E-10 61.6 4.1 30 21-50 48-77 (436)
262 PF07726 AAA_3: ATPase family 97.9 7.4E-06 1.6E-10 53.9 2.0 26 24-49 2-27 (131)
263 cd00820 PEPCK_HprK Phosphoenol 97.9 1.5E-05 3.3E-10 50.9 3.4 23 20-42 14-36 (107)
264 KOG1384 tRNA delta(2)-isopente 97.9 6.4E-05 1.4E-09 56.9 7.1 36 20-55 6-41 (348)
265 PF02367 UPF0079: Uncharacteri 97.9 1.8E-05 4E-10 52.0 3.8 29 19-47 13-41 (123)
266 PF00693 Herpes_TK: Thymidine 97.9 0.0008 1.7E-08 50.3 12.7 123 28-152 1-172 (281)
267 TIGR03708 poly_P_AMP_trns poly 97.9 0.0011 2.3E-08 53.8 14.4 149 18-187 296-473 (493)
268 PF03215 Rad17: Rad17 cell cyc 97.9 2.1E-05 4.6E-10 64.2 4.7 31 20-50 44-74 (519)
269 TIGR02640 gas_vesic_GvpN gas v 97.8 1.9E-05 4.2E-10 59.2 4.0 29 22-50 22-50 (262)
270 PRK14729 miaA tRNA delta(2)-is 97.8 2.4E-05 5.1E-10 59.4 4.4 34 21-55 4-37 (300)
271 cd01131 PilT Pilus retraction 97.8 1.9E-05 4.1E-10 56.7 3.6 24 23-46 3-26 (198)
272 cd01124 KaiC KaiC is a circadi 97.8 2.1E-05 4.5E-10 55.7 3.9 22 24-45 2-23 (187)
273 KOG0780 Signal recognition par 97.8 4.8E-05 1E-09 58.8 5.9 113 17-135 97-226 (483)
274 COG4240 Predicted kinase [Gene 97.8 3.1E-05 6.8E-10 55.8 4.5 45 14-58 43-93 (300)
275 KOG0735 AAA+-type ATPase [Post 97.8 0.00011 2.4E-09 61.0 8.2 44 17-60 697-742 (952)
276 PRK14949 DNA polymerase III su 97.8 0.00075 1.6E-08 58.1 13.3 28 20-47 37-64 (944)
277 PTZ00361 26 proteosome regulat 97.8 3.1E-05 6.8E-10 61.9 5.0 33 18-50 214-246 (438)
278 COG1117 PstB ABC-type phosphat 97.8 2.3E-05 5E-10 56.0 3.7 30 16-46 28-57 (253)
279 PRK05342 clpX ATP-dependent pr 97.8 1.8E-05 4E-10 62.8 3.6 32 21-52 108-139 (412)
280 PRK06893 DNA replication initi 97.8 0.00039 8.6E-09 51.1 10.4 33 21-53 39-76 (229)
281 PRK12323 DNA polymerase III su 97.8 0.0014 3.1E-08 54.7 14.4 28 20-47 37-64 (700)
282 TIGR01526 nadR_NMN_Atrans nico 97.8 2.7E-05 5.9E-10 60.1 4.3 30 21-50 162-191 (325)
283 PF13191 AAA_16: AAA ATPase do 97.8 2.3E-05 4.9E-10 55.3 3.7 30 17-46 20-49 (185)
284 TIGR03877 thermo_KaiC_1 KaiC d 97.8 9.6E-05 2.1E-09 54.6 7.0 26 19-44 19-44 (237)
285 KOG0743 AAA+-type ATPase [Post 97.8 1.5E-05 3.3E-10 62.6 2.8 36 16-51 230-265 (457)
286 COG3839 MalK ABC-type sugar tr 97.8 1.9E-05 4.2E-10 60.6 3.2 25 19-43 27-51 (338)
287 TIGR01618 phage_P_loop phage n 97.8 3.1E-05 6.8E-10 56.2 4.1 32 21-54 12-43 (220)
288 PRK11784 tRNA 2-selenouridine 97.8 8.4E-05 1.8E-09 57.7 6.7 111 21-144 141-256 (345)
289 PRK14957 DNA polymerase III su 97.8 0.0015 3.1E-08 53.9 14.0 28 20-47 37-64 (546)
290 TIGR00635 ruvB Holliday juncti 97.8 3.7E-05 8.1E-10 58.9 4.7 29 20-48 29-57 (305)
291 PRK04328 hypothetical protein; 97.8 0.00011 2.4E-09 54.7 7.0 36 9-44 9-46 (249)
292 PRK00080 ruvB Holliday junctio 97.8 3.5E-05 7.6E-10 59.7 4.5 30 20-49 50-79 (328)
293 PRK07003 DNA polymerase III su 97.8 0.0013 2.8E-08 55.8 13.7 28 20-47 37-64 (830)
294 COG3896 Chloramphenicol 3-O-ph 97.8 0.00035 7.6E-09 47.5 8.5 128 17-144 19-160 (205)
295 PF03205 MobB: Molybdopterin g 97.8 3.1E-05 6.7E-10 52.4 3.6 24 22-45 1-24 (140)
296 PRK14964 DNA polymerase III su 97.8 0.0014 3.1E-08 53.3 13.6 27 21-47 35-61 (491)
297 PF13555 AAA_29: P-loop contai 97.8 3.6E-05 7.7E-10 44.1 3.3 23 22-44 24-46 (62)
298 COG3172 NadR Predicted ATPase/ 97.8 0.00054 1.2E-08 46.8 9.3 29 20-48 7-35 (187)
299 COG0466 Lon ATP-dependent Lon 97.8 3.5E-05 7.6E-10 63.9 4.4 35 16-50 345-379 (782)
300 TIGR00382 clpX endopeptidase C 97.7 3.2E-05 7E-10 61.3 4.0 29 22-50 117-145 (413)
301 TIGR03015 pepcterm_ATPase puta 97.7 3.2E-05 6.9E-10 58.1 3.8 26 21-46 43-68 (269)
302 PF03029 ATP_bind_1: Conserved 97.7 2.2E-05 4.7E-10 57.9 2.8 21 26-46 1-21 (238)
303 TIGR03420 DnaA_homol_Hda DnaA 97.7 5.9E-05 1.3E-09 55.2 5.0 39 18-56 35-78 (226)
304 KOG0734 AAA+-type ATPase conta 97.7 0.00039 8.5E-09 56.2 9.7 35 17-51 333-367 (752)
305 TIGR01243 CDC48 AAA family ATP 97.7 0.00051 1.1E-08 59.0 11.2 33 18-50 209-241 (733)
306 PRK14958 DNA polymerase III su 97.7 0.0022 4.8E-08 52.6 14.4 28 20-47 37-64 (509)
307 COG1124 DppF ABC-type dipeptid 97.7 3.3E-05 7.1E-10 56.2 3.4 25 19-43 31-55 (252)
308 PRK06067 flagellar accessory p 97.7 7.2E-05 1.6E-09 55.1 5.4 26 19-44 23-48 (234)
309 TIGR00101 ureG urease accessor 97.7 3.9E-05 8.5E-10 55.1 3.8 26 21-46 1-26 (199)
310 COG0541 Ffh Signal recognition 97.7 0.00019 4.2E-09 56.4 7.8 109 18-133 97-223 (451)
311 PRK12726 flagellar biosynthesi 97.7 0.00073 1.6E-08 53.0 10.9 27 19-45 204-230 (407)
312 PRK14960 DNA polymerase III su 97.7 0.0025 5.5E-08 53.4 14.6 28 20-47 36-63 (702)
313 COG3842 PotA ABC-type spermidi 97.7 2.8E-05 6.2E-10 60.1 3.2 24 20-43 30-53 (352)
314 PRK14955 DNA polymerase III su 97.7 0.0025 5.4E-08 50.8 14.2 28 20-47 37-64 (397)
315 COG3911 Predicted ATPase [Gene 97.7 3.7E-05 8E-10 51.7 3.2 23 22-44 10-32 (183)
316 PF10662 PduV-EutP: Ethanolami 97.7 3.4E-05 7.4E-10 52.0 3.1 23 22-44 2-24 (143)
317 PRK09435 membrane ATPase/prote 97.7 4.7E-05 1E-09 58.7 4.2 28 18-45 53-80 (332)
318 PRK04195 replication factor C 97.7 5E-05 1.1E-09 61.9 4.6 30 21-50 39-68 (482)
319 TIGR02880 cbbX_cfxQ probable R 97.7 7.1E-05 1.5E-09 56.8 5.0 25 21-45 58-82 (284)
320 PRK10416 signal recognition pa 97.7 5.2E-05 1.1E-09 58.3 4.3 27 19-45 112-138 (318)
321 PRK14086 dnaA chromosomal repl 97.7 0.0017 3.6E-08 54.0 13.1 37 23-59 316-359 (617)
322 PF03308 ArgK: ArgK protein; 97.7 4.9E-05 1.1E-09 56.0 3.9 27 19-45 27-53 (266)
323 PRK07764 DNA polymerase III su 97.7 0.0016 3.5E-08 56.2 13.4 28 20-47 36-63 (824)
324 TIGR00362 DnaA chromosomal rep 97.7 0.0043 9.4E-08 49.6 15.2 38 22-59 137-181 (405)
325 COG2805 PilT Tfp pilus assembl 97.7 0.00014 3.1E-09 54.6 6.2 90 17-115 121-215 (353)
326 PRK08084 DNA replication initi 97.7 5.9E-05 1.3E-09 55.7 4.2 34 21-54 45-83 (235)
327 COG2255 RuvB Holliday junction 97.7 4.7E-05 1E-09 56.6 3.6 26 23-48 54-79 (332)
328 PRK08116 hypothetical protein; 97.7 0.00087 1.9E-08 50.4 10.6 39 21-59 114-157 (268)
329 PF00308 Bac_DnaA: Bacterial d 97.7 0.00051 1.1E-08 50.1 9.0 39 22-60 35-80 (219)
330 KOG0727 26S proteasome regulat 97.7 0.00017 3.7E-09 53.0 6.4 54 13-66 181-236 (408)
331 cd01918 HprK_C HprK/P, the bif 97.7 5.7E-05 1.2E-09 51.3 3.7 31 21-52 14-44 (149)
332 PF07724 AAA_2: AAA domain (Cd 97.7 6.3E-05 1.4E-09 52.7 4.1 26 22-47 4-29 (171)
333 PRK08903 DnaA regulatory inact 97.7 9.6E-05 2.1E-09 54.2 5.2 36 21-56 42-82 (227)
334 PHA02244 ATPase-like protein 97.7 3.7E-05 8.1E-10 59.7 3.1 33 22-54 120-152 (383)
335 TIGR00064 ftsY signal recognit 97.7 6.4E-05 1.4E-09 56.6 4.3 27 19-45 70-96 (272)
336 cd03115 SRP The signal recogni 97.7 5.6E-05 1.2E-09 53.0 3.8 23 23-45 2-24 (173)
337 COG1219 ClpX ATP-dependent pro 97.6 5.3E-05 1.1E-09 57.3 3.7 32 21-52 97-128 (408)
338 TIGR03878 thermo_KaiC_2 KaiC d 97.6 0.00024 5.1E-09 53.2 7.1 34 19-52 34-72 (259)
339 PRK14952 DNA polymerase III su 97.6 0.0038 8.1E-08 52.0 14.6 28 20-47 34-61 (584)
340 PF00005 ABC_tran: ABC transpo 97.6 4.5E-05 9.7E-10 51.2 2.9 26 20-45 10-35 (137)
341 cd01130 VirB11-like_ATPase Typ 97.6 5.8E-05 1.3E-09 53.6 3.6 121 20-144 24-147 (186)
342 KOG1969 DNA replication checkp 97.6 5.8E-05 1.3E-09 62.7 4.0 34 18-51 323-356 (877)
343 PRK14088 dnaA chromosomal repl 97.6 0.0065 1.4E-07 49.1 15.6 39 22-60 131-176 (440)
344 COG2884 FtsE Predicted ATPase 97.6 7.1E-05 1.5E-09 52.6 3.8 29 17-45 24-52 (223)
345 COG1120 FepC ABC-type cobalami 97.6 5.8E-05 1.3E-09 55.9 3.6 28 18-45 25-52 (258)
346 KOG4622 Predicted nucleotide k 97.6 0.00054 1.2E-08 48.3 8.1 35 23-57 3-43 (291)
347 PF01695 IstB_IS21: IstB-like 97.6 0.00013 2.8E-09 51.5 5.1 40 20-59 46-90 (178)
348 KOG0726 26S proteasome regulat 97.6 0.00023 5E-09 53.3 6.6 46 5-50 201-248 (440)
349 PRK13900 type IV secretion sys 97.6 0.00049 1.1E-08 53.3 8.7 137 20-160 159-299 (332)
350 COG1223 Predicted ATPase (AAA+ 97.6 4.7E-05 1E-09 56.1 2.9 41 20-60 150-192 (368)
351 TIGR00176 mobB molybdopterin-g 97.6 6E-05 1.3E-09 51.9 3.3 23 23-45 1-23 (155)
352 cd03238 ABC_UvrA The excision 97.6 6.4E-05 1.4E-09 52.9 3.5 27 17-43 17-43 (176)
353 TIGR01166 cbiO cobalt transpor 97.6 6.4E-05 1.4E-09 53.5 3.6 29 17-45 14-42 (190)
354 PRK10733 hflB ATP-dependent me 97.6 0.0011 2.3E-08 56.1 11.2 31 21-51 185-215 (644)
355 cd03292 ABC_FtsE_transporter F 97.6 6.5E-05 1.4E-09 54.5 3.6 27 19-45 25-51 (214)
356 PRK13342 recombination factor 97.6 8.2E-05 1.8E-09 59.5 4.4 32 19-50 34-65 (413)
357 PHA02624 large T antigen; Prov 97.6 9E-05 1.9E-09 60.9 4.6 34 19-52 429-462 (647)
358 TIGR00960 3a0501s02 Type II (G 97.6 6.5E-05 1.4E-09 54.6 3.6 27 19-45 27-53 (216)
359 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 6.6E-05 1.4E-09 54.6 3.6 28 18-45 27-54 (218)
360 PRK15455 PrkA family serine pr 97.6 6.4E-05 1.4E-09 61.5 3.7 28 19-46 101-128 (644)
361 TIGR02655 circ_KaiC circadian 97.6 0.00012 2.6E-09 59.7 5.4 82 20-105 262-361 (484)
362 COG2326 Uncharacterized conser 97.6 0.0058 1.3E-07 44.9 13.3 145 18-187 71-248 (270)
363 PRK10646 ADP-binding protein; 97.6 0.0001 2.2E-09 50.3 4.1 28 20-47 27-54 (153)
364 COG1703 ArgK Putative periplas 97.6 7.4E-05 1.6E-09 56.0 3.7 28 18-45 48-75 (323)
365 cd01120 RecA-like_NTPases RecA 97.6 6.1E-05 1.3E-09 51.8 3.2 23 23-45 1-23 (165)
366 PRK13768 GTPase; Provisional 97.6 7.8E-05 1.7E-09 55.6 3.8 26 20-45 1-26 (253)
367 TIGR03499 FlhF flagellar biosy 97.6 8.4E-05 1.8E-09 56.3 4.0 26 20-45 193-218 (282)
368 PRK13695 putative NTPase; Prov 97.6 8.2E-05 1.8E-09 52.2 3.8 24 22-45 1-24 (174)
369 cd03269 ABC_putative_ATPase Th 97.6 7.4E-05 1.6E-09 54.1 3.6 28 18-45 23-50 (210)
370 PRK14951 DNA polymerase III su 97.6 0.0048 1E-07 51.7 14.5 28 20-47 37-64 (618)
371 PF08477 Miro: Miro-like prote 97.6 8.2E-05 1.8E-09 48.6 3.5 22 23-44 1-22 (119)
372 PRK06526 transposase; Provisio 97.6 0.00012 2.7E-09 54.5 4.8 39 20-58 97-140 (254)
373 cd04155 Arl3 Arl3 subfamily. 97.6 7.8E-05 1.7E-09 52.0 3.6 28 17-44 10-37 (173)
374 cd03225 ABC_cobalt_CbiO_domain 97.6 7.6E-05 1.7E-09 54.0 3.6 28 18-45 24-51 (211)
375 KOG1532 GTPase XAB1, interacts 97.6 8.1E-05 1.7E-09 55.1 3.6 29 17-45 15-43 (366)
376 cd03116 MobB Molybdenum is an 97.6 9.1E-05 2E-09 51.2 3.7 25 22-46 2-26 (159)
377 cd03222 ABC_RNaseL_inhibitor T 97.6 7.7E-05 1.7E-09 52.5 3.4 27 19-45 23-49 (177)
378 PRK07994 DNA polymerase III su 97.6 0.0028 6.1E-08 53.2 13.0 28 20-47 37-64 (647)
379 cd03226 ABC_cobalt_CbiO_domain 97.6 7.7E-05 1.7E-09 53.8 3.5 28 18-45 23-50 (205)
380 TIGR02673 FtsE cell division A 97.6 8E-05 1.7E-09 54.1 3.6 28 18-45 25-52 (214)
381 cd03262 ABC_HisP_GlnQ_permease 97.6 8.4E-05 1.8E-09 53.9 3.6 28 18-45 23-50 (213)
382 PRK08533 flagellar accessory p 97.6 0.00028 6E-09 51.9 6.3 26 20-45 23-48 (230)
383 PRK14962 DNA polymerase III su 97.6 9.9E-05 2.1E-09 59.8 4.3 28 20-47 35-62 (472)
384 cd03261 ABC_Org_Solvent_Resist 97.6 8.3E-05 1.8E-09 54.8 3.6 28 18-45 23-50 (235)
385 PRK12422 chromosomal replicati 97.6 0.011 2.5E-07 47.7 15.9 37 22-58 142-183 (445)
386 TIGR02315 ABC_phnC phosphonate 97.6 8.3E-05 1.8E-09 55.1 3.6 27 19-45 26-52 (243)
387 PRK14954 DNA polymerase III su 97.6 0.0047 1E-07 51.8 14.1 29 20-48 37-65 (620)
388 cd03259 ABC_Carb_Solutes_like 97.6 8.7E-05 1.9E-09 53.8 3.6 28 18-45 23-50 (213)
389 PRK04296 thymidine kinase; Pro 97.6 9.1E-05 2E-09 52.8 3.7 26 20-45 1-26 (190)
390 cd03224 ABC_TM1139_LivF_branch 97.6 8E-05 1.7E-09 54.3 3.5 28 18-45 23-50 (222)
391 cd03219 ABC_Mj1267_LivG_branch 97.5 7.6E-05 1.6E-09 55.0 3.3 28 18-45 23-50 (236)
392 PRK14490 putative bifunctional 97.5 9E-05 1.9E-09 58.4 3.8 27 20-46 4-30 (369)
393 cd03256 ABC_PhnC_transporter A 97.5 8.8E-05 1.9E-09 54.8 3.6 28 18-45 24-51 (241)
394 KOG0737 AAA+-type ATPase [Post 97.5 5.9E-05 1.3E-09 57.9 2.7 40 20-59 126-167 (386)
395 COG1763 MobB Molybdopterin-gua 97.5 9.8E-05 2.1E-09 50.9 3.5 27 20-46 1-27 (161)
396 cd03229 ABC_Class3 This class 97.5 9.7E-05 2.1E-09 52.1 3.6 28 18-45 23-50 (178)
397 KOG2004 Mitochondrial ATP-depe 97.5 0.0001 2.3E-09 61.2 4.2 36 17-52 434-471 (906)
398 TIGR00073 hypB hydrogenase acc 97.5 0.00011 2.3E-09 53.2 3.9 31 16-46 17-47 (207)
399 PRK06835 DNA replication prote 97.5 0.0023 5E-08 49.5 11.4 38 22-59 184-226 (329)
400 cd03293 ABC_NrtD_SsuB_transpor 97.5 8.5E-05 1.8E-09 54.2 3.4 27 19-45 28-54 (220)
401 cd03235 ABC_Metallic_Cations A 97.5 8.1E-05 1.8E-09 54.0 3.3 28 18-45 22-49 (213)
402 cd03301 ABC_MalK_N The N-termi 97.5 9.4E-05 2E-09 53.6 3.6 27 19-45 24-50 (213)
403 cd03260 ABC_PstB_phosphate_tra 97.5 9.4E-05 2E-09 54.2 3.7 28 18-45 23-50 (227)
404 TIGR02525 plasmid_TraJ plasmid 97.5 0.00067 1.5E-08 53.3 8.5 116 22-143 150-271 (372)
405 TIGR02012 tigrfam_recA protein 97.5 0.00063 1.4E-08 52.3 8.2 36 19-54 53-93 (321)
406 cd03230 ABC_DR_subfamily_A Thi 97.5 9.7E-05 2.1E-09 51.8 3.6 27 19-45 24-50 (173)
407 PRK05896 DNA polymerase III su 97.5 0.0059 1.3E-07 50.8 14.2 28 20-47 37-64 (605)
408 cd03263 ABC_subfamily_A The AB 97.5 9.4E-05 2E-09 53.9 3.6 27 19-45 26-52 (220)
409 COG1855 ATPase (PilT family) [ 97.5 8.1E-05 1.8E-09 58.8 3.3 25 21-45 263-287 (604)
410 TIGR02211 LolD_lipo_ex lipopro 97.5 9.7E-05 2.1E-09 53.9 3.6 28 18-45 28-55 (221)
411 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 9.8E-05 2.1E-09 54.5 3.6 28 18-45 24-51 (236)
412 cd03296 ABC_CysA_sulfate_impor 97.5 9.7E-05 2.1E-09 54.6 3.6 28 18-45 25-52 (239)
413 cd03258 ABC_MetN_methionine_tr 97.5 9.8E-05 2.1E-09 54.3 3.6 28 18-45 28-55 (233)
414 PRK14950 DNA polymerase III su 97.5 0.0043 9.4E-08 51.9 13.6 28 20-47 37-64 (585)
415 cd00544 CobU Adenosylcobinamid 97.5 0.00011 2.4E-09 51.3 3.6 24 23-46 1-24 (169)
416 cd03223 ABCD_peroxisomal_ALDP 97.5 0.00011 2.4E-09 51.2 3.6 28 18-45 24-51 (166)
417 cd03264 ABC_drug_resistance_li 97.5 9E-05 1.9E-09 53.7 3.3 25 20-45 25-49 (211)
418 PRK15177 Vi polysaccharide exp 97.5 0.0001 2.2E-09 53.6 3.5 27 19-45 11-37 (213)
419 PLN03025 replication factor C 97.5 0.00011 2.4E-09 56.7 4.0 24 22-45 35-58 (319)
420 PRK11629 lolD lipoprotein tran 97.5 0.0001 2.2E-09 54.3 3.6 27 19-45 33-59 (233)
421 KOG0729 26S proteasome regulat 97.5 0.00015 3.3E-09 53.6 4.4 61 5-65 193-257 (435)
422 PRK10247 putative ABC transpor 97.5 0.00011 2.3E-09 53.9 3.6 28 18-45 30-57 (225)
423 TIGR03608 L_ocin_972_ABC putat 97.5 0.0001 2.2E-09 53.1 3.5 27 19-45 22-48 (206)
424 KOG0736 Peroxisome assembly fa 97.5 0.00043 9.2E-09 58.1 7.3 32 21-52 705-736 (953)
425 cd03265 ABC_DrrA DrrA is the A 97.5 0.00011 2.3E-09 53.6 3.6 27 19-45 24-50 (220)
426 cd03257 ABC_NikE_OppD_transpor 97.5 0.0001 2.2E-09 54.0 3.5 28 18-45 28-55 (228)
427 TIGR02655 circ_KaiC circadian 97.5 0.00037 8E-09 56.9 7.0 34 10-43 8-43 (484)
428 cd03247 ABCC_cytochrome_bd The 97.5 0.00011 2.5E-09 51.7 3.6 28 18-45 25-52 (178)
429 cd03246 ABCC_Protease_Secretio 97.5 0.00012 2.6E-09 51.4 3.7 28 18-45 25-52 (173)
430 PRK11248 tauB taurine transpor 97.5 0.00011 2.3E-09 54.9 3.6 28 18-45 24-51 (255)
431 cd03232 ABC_PDR_domain2 The pl 97.5 0.00011 2.3E-09 52.6 3.4 25 19-43 31-55 (192)
432 COG0378 HypB Ni2+-binding GTPa 97.5 0.00013 2.9E-09 51.3 3.7 27 19-45 10-37 (202)
433 PRK14250 phosphate ABC transpo 97.5 0.00011 2.4E-09 54.4 3.6 27 19-45 27-53 (241)
434 COG1419 FlhF Flagellar GTP-bin 97.5 0.00044 9.6E-09 54.2 6.9 27 20-46 202-228 (407)
435 KOG1970 Checkpoint RAD17-RFC c 97.5 0.00013 2.8E-09 58.9 4.1 32 19-50 108-139 (634)
436 PRK14961 DNA polymerase III su 97.5 0.00012 2.5E-09 57.6 3.8 28 20-47 37-64 (363)
437 PRK09183 transposase/IS protei 97.5 0.00023 4.9E-09 53.3 5.2 37 20-56 101-142 (259)
438 PRK13541 cytochrome c biogenes 97.5 0.00012 2.6E-09 52.4 3.6 27 19-45 24-50 (195)
439 cd03218 ABC_YhbG The ABC trans 97.5 0.00011 2.5E-09 53.9 3.6 27 19-45 24-50 (232)
440 COG5192 BMS1 GTP-binding prote 97.5 0.00012 2.6E-09 59.4 3.9 27 20-46 68-94 (1077)
441 TIGR01978 sufC FeS assembly AT 97.5 0.00011 2.4E-09 54.3 3.5 26 19-44 24-49 (243)
442 PRK14722 flhF flagellar biosyn 97.5 0.00013 2.9E-09 57.1 4.0 27 19-45 135-161 (374)
443 COG4778 PhnL ABC-type phosphon 97.5 0.00011 2.3E-09 50.9 3.1 29 17-45 33-61 (235)
444 CHL00206 ycf2 Ycf2; Provisiona 97.5 0.00011 2.4E-09 67.1 4.0 40 18-57 1627-1668(2281)
445 cd03214 ABC_Iron-Siderophores_ 97.5 0.00013 2.8E-09 51.6 3.6 28 18-45 22-49 (180)
446 cd00983 recA RecA is a bacter 97.5 0.001 2.2E-08 51.3 8.6 35 19-53 53-92 (325)
447 cd03283 ABC_MutS-like MutS-lik 97.5 0.00011 2.4E-09 52.8 3.3 23 21-43 25-47 (199)
448 TIGR03410 urea_trans_UrtE urea 97.5 0.00012 2.6E-09 53.7 3.5 28 18-45 23-50 (230)
449 PRK14242 phosphate transporter 97.5 0.00012 2.6E-09 54.6 3.5 26 19-44 30-55 (253)
450 COG0802 Predicted ATPase or ki 97.5 0.00017 3.7E-09 48.7 3.9 29 19-47 23-51 (149)
451 cd03216 ABC_Carb_Monos_I This 97.5 0.00013 2.8E-09 50.7 3.5 28 18-45 23-50 (163)
452 PRK11124 artP arginine transpo 97.5 0.00013 2.7E-09 54.1 3.6 27 19-45 26-52 (242)
453 PF01926 MMR_HSR1: 50S ribosom 97.5 0.00011 2.4E-09 47.9 2.9 20 24-43 2-21 (116)
454 COG2812 DnaX DNA polymerase II 97.5 0.00056 1.2E-08 55.6 7.4 29 21-49 38-66 (515)
455 cd03215 ABC_Carb_Monos_II This 97.5 0.00013 2.8E-09 51.7 3.5 27 19-45 24-50 (182)
456 cd03268 ABC_BcrA_bacitracin_re 97.5 0.00013 2.9E-09 52.7 3.6 27 19-45 24-50 (208)
457 cd03295 ABC_OpuCA_Osmoprotecti 97.5 0.00013 2.9E-09 54.0 3.7 29 17-45 23-51 (242)
458 TIGR00678 holB DNA polymerase 97.5 0.012 2.5E-07 41.8 13.5 27 20-46 13-39 (188)
459 PRK13540 cytochrome c biogenes 97.5 0.00014 3E-09 52.3 3.6 28 18-45 24-51 (200)
460 TIGR02237 recomb_radB DNA repa 97.5 0.00017 3.6E-09 52.2 4.1 27 19-45 10-36 (209)
461 TIGR00750 lao LAO/AO transport 97.5 0.00017 3.6E-09 55.3 4.2 27 19-45 32-58 (300)
462 PRK13851 type IV secretion sys 97.5 0.0001 2.3E-09 57.2 3.1 27 20-46 161-187 (344)
463 PF01712 dNK: Deoxynucleoside 97.5 0.00011 2.5E-09 50.0 3.0 30 120-151 63-93 (146)
464 cd03266 ABC_NatA_sodium_export 97.5 0.00013 2.9E-09 53.0 3.6 27 19-45 29-55 (218)
465 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.00014 2.9E-09 49.5 3.4 28 18-45 23-50 (144)
466 PRK14247 phosphate ABC transpo 97.5 0.00013 2.8E-09 54.3 3.6 27 19-45 27-53 (250)
467 cd03254 ABCC_Glucan_exporter_l 97.5 0.00013 2.9E-09 53.5 3.6 28 18-45 26-53 (229)
468 PRK07133 DNA polymerase III su 97.5 0.006 1.3E-07 51.8 13.6 30 19-48 38-67 (725)
469 PRK10584 putative ABC transpor 97.5 0.00014 2.9E-09 53.4 3.6 27 19-45 34-60 (228)
470 cd03233 ABC_PDR_domain1 The pl 97.5 0.00012 2.6E-09 52.7 3.3 28 18-45 30-57 (202)
471 TIGR02770 nickel_nikD nickel i 97.5 0.00013 2.8E-09 53.6 3.5 27 19-45 10-36 (230)
472 PRK11264 putative amino-acid A 97.5 0.00013 2.9E-09 54.2 3.6 27 19-45 27-53 (250)
473 cd03228 ABCC_MRP_Like The MRP 97.5 0.00015 3.2E-09 50.8 3.7 29 17-45 24-52 (171)
474 TIGR00763 lon ATP-dependent pr 97.5 0.00017 3.8E-09 62.1 4.7 31 20-50 346-376 (775)
475 COG3840 ThiQ ABC-type thiamine 97.4 0.00014 3.1E-09 50.8 3.4 25 19-43 23-47 (231)
476 TIGR02323 CP_lyasePhnK phospho 97.4 0.00013 2.8E-09 54.4 3.5 27 19-45 27-53 (253)
477 PRK10744 pstB phosphate transp 97.4 0.00013 2.9E-09 54.6 3.6 27 19-45 37-63 (260)
478 TIGR01184 ntrCD nitrate transp 97.4 0.00014 3E-09 53.5 3.6 27 19-45 9-35 (230)
479 PRK10908 cell division protein 97.4 0.00014 3.1E-09 53.1 3.6 28 18-45 25-52 (222)
480 PRK14241 phosphate transporter 97.4 0.00013 2.9E-09 54.5 3.5 27 18-44 27-53 (258)
481 PF01078 Mg_chelatase: Magnesi 97.4 0.00013 2.8E-09 52.2 3.3 24 22-45 23-46 (206)
482 PRK10463 hydrogenase nickel in 97.4 0.00014 3E-09 54.9 3.6 30 16-45 99-128 (290)
483 PHA02544 44 clamp loader, smal 97.4 0.00016 3.5E-09 55.7 4.0 28 20-47 42-69 (316)
484 PRK00149 dnaA chromosomal repl 97.4 0.0055 1.2E-07 49.7 13.0 37 22-58 149-192 (450)
485 PRK10895 lipopolysaccharide AB 97.4 0.00014 3.1E-09 53.8 3.6 28 18-45 26-53 (241)
486 PRK11247 ssuB aliphatic sulfon 97.4 0.00014 3.1E-09 54.4 3.6 27 19-45 36-62 (257)
487 cd03234 ABCG_White The White s 97.4 0.00014 3E-09 53.3 3.5 28 18-45 30-57 (226)
488 cd01394 radB RadB. The archaea 97.4 0.00018 3.9E-09 52.4 4.1 27 19-45 17-43 (218)
489 PRK13833 conjugal transfer pro 97.4 0.00016 3.4E-09 55.7 3.9 25 21-45 144-168 (323)
490 PRK08181 transposase; Validate 97.4 0.00032 6.9E-09 52.7 5.4 40 20-59 105-149 (269)
491 PRK10771 thiQ thiamine transpo 97.4 0.00014 3.1E-09 53.5 3.5 28 18-45 22-49 (232)
492 PRK14267 phosphate ABC transpo 97.4 0.00014 3.1E-09 54.2 3.6 28 18-45 27-54 (253)
493 cd03245 ABCC_bacteriocin_expor 97.4 0.00015 3.2E-09 52.9 3.6 28 18-45 27-54 (220)
494 PRK13539 cytochrome c biogenes 97.4 0.00015 3.3E-09 52.3 3.6 27 19-45 26-52 (207)
495 PRK06851 hypothetical protein; 97.4 0.00025 5.3E-09 55.4 4.9 28 18-45 27-54 (367)
496 KOG0234 Fructose-6-phosphate 2 97.4 0.0048 1E-07 48.8 11.9 153 18-171 25-196 (438)
497 TIGR03771 anch_rpt_ABC anchore 97.4 0.00015 3.2E-09 53.1 3.6 26 20-45 5-30 (223)
498 TIGR02524 dot_icm_DotB Dot/Icm 97.4 0.00017 3.6E-09 56.4 4.0 26 20-45 133-158 (358)
499 cd03237 ABC_RNaseL_inhibitor_d 97.4 0.00015 3.3E-09 53.9 3.6 26 20-45 24-49 (246)
500 COG4525 TauB ABC-type taurine 97.4 0.00013 2.9E-09 51.6 3.1 26 18-43 28-53 (259)
No 1
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=196.81 Aligned_cols=177 Identities=54% Similarity=0.966 Sum_probs=163.6
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (196)
...++++|++.|+|||||-|+|.++++++++.|++++|++|+.... ++..+..+..++..|..+|..+..+++.+++.+
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS 83 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999999999999999999888 899999999999999999999999999999987
Q ss_pred cCC-CeEEEeccCCCHHHHHHHHhhcCC-CCcEEEEEEcCHHHHHHHHhhccC--CCCCCcHHHHHHHHHHHHhcchhHH
Q 029252 96 SGN-DKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVV 171 (196)
Q Consensus 96 ~~~-~~~iidg~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~R~~~R~~--~r~~~~~~~~~~~~~~~~~~~~~~~ 171 (196)
... ++++|||||+..++...|.. ... .+++++|++|+++++.+|+..|.. .|.+++.+.+++|++.|.....|++
T Consensus 84 ~~~~~~fLIDGyPR~~~q~~~fe~-~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi 162 (195)
T KOG3079|consen 84 SGDSNGFLIDGYPRNVDQLVEFER-KIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVI 162 (195)
T ss_pred cCCCCeEEecCCCCChHHHHHHHH-HhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHH
Confidence 664 55999999999999999998 444 689999999999999999999933 4999999999999999999999999
Q ss_pred HHHHhcCcEEEEeCCCCceeEEe
Q 029252 172 QYYEAKGKVRKVIFCSPIFILVI 194 (196)
Q Consensus 172 ~~~~~~~~~~~id~~~~~e~v~~ 194 (196)
++|...+++..||++.+.++|+.
T Consensus 163 ~~~e~kg~l~~i~a~~~~d~Vf~ 185 (195)
T KOG3079|consen 163 EYYEKKGKLLKINAERSVDDVFE 185 (195)
T ss_pred HHHHccCcEEEecCCCCHHHHHH
Confidence 99999999999999999988763
No 2
>PLN02674 adenylate kinase
Probab=100.00 E-value=5.9e-33 Score=201.97 Aligned_cols=175 Identities=27% Similarity=0.537 Sum_probs=159.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-C
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-N 98 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 98 (196)
.++.|+|.|+|||||||+|+.|++++++.+++.+++++..+..+++.+..+..++..|..+|+++...++.+.+.+.+ .
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 109 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 109 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcC
Confidence 357799999999999999999999999999999999999999999999999999999999999999999999997655 6
Q ss_pred CeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc----cC-------------------------
Q 029252 99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ------------------------- 146 (196)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R----~~------------------------- 146 (196)
.+||+||||++..|+..|... .+..++.+|+|++|.+++.+|+..| .+
T Consensus 110 ~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~ 189 (244)
T PLN02674 110 KGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 189 (244)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccc
Confidence 889999999999999987653 3567999999999999999999998 12
Q ss_pred CCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEEe
Q 029252 147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVI 194 (196)
Q Consensus 147 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~ 194 (196)
.|.+++++.+++|++.|+....+++++|...+.++.||+++++++|+.
T Consensus 190 ~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~ 237 (244)
T PLN02674 190 QRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTA 237 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHH
Confidence 278899999999999999999999999999889999999999988753
No 3
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=1.4e-32 Score=194.76 Aligned_cols=172 Identities=31% Similarity=0.585 Sum_probs=155.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
+++.|+|.|+|||||||+++.|++++|+.+++++|++++.+..+++.+.....++..|..+++.+...++.+.+.+....
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~ 80 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSG 80 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCC
Confidence 35679999999999999999999999999999999999998888888888888889999999999999888888754577
Q ss_pred eEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252 100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (196)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (196)
+||+||||++..+...+... ....++.+++|++|++++.+|+..| ++.+++++.+.+|+..|+....+++++|..
T Consensus 81 g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R--~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~ 158 (183)
T PRK14531 81 GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLAR--GRADDNEAVIRNRLEVYREKTAPLIDHYRQ 158 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999998877653 3456788999999999999999999 888899999999999999999999999998
Q ss_pred cCcEEEEeCCCCceeEE
Q 029252 177 KGKVRKVIFCSPIFILV 193 (196)
Q Consensus 177 ~~~~~~id~~~~~e~v~ 193 (196)
.+.++.||++.++++++
T Consensus 159 ~~~~~~id~~~~~~~v~ 175 (183)
T PRK14531 159 RGLLQSVEAQGSIEAIT 175 (183)
T ss_pred cCCEEEEECCCCHHHHH
Confidence 88899999999998765
No 4
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=5.1e-32 Score=197.78 Aligned_cols=181 Identities=31% Similarity=0.564 Sum_probs=161.9
Q ss_pred hhhcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHH
Q 029252 11 EADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (196)
Q Consensus 11 ~~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (196)
..+......+++.|+|.|+|||||||+|+.|++.+++.+++.++++++.+..+++.+..+..++..|..+|+++...++.
T Consensus 19 ~~~~~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~ 98 (261)
T PLN02459 19 ACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLS 98 (261)
T ss_pred cccCCccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHH
Confidence 34444444556779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc----C-----------------
Q 029252 91 KAMEES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN----Q----------------- 146 (196)
Q Consensus 91 ~~l~~~---~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~----~----------------- 146 (196)
+.+.+. ...+||+||||++.+|...|.. . ..++.+|+|++|++++.+|+..|. +
T Consensus 99 ~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~-~-~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~ 176 (261)
T PLN02459 99 KRLEAGEEEGESGFILDGFPRTVRQAEILEG-V-TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGR 176 (261)
T ss_pred HHHhcccccCCceEEEeCCCCCHHHHHHHHh-c-CCCCEEEEEECCHHHHHHHhhccccccccCcccccccccccccccc
Confidence 998753 3688999999999999999886 3 468999999999999999999981 0
Q ss_pred -------------------CCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 147 -------------------GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 147 -------------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.|.+++++.+.+|++.|..+..+++++|...+.++.||++.++++|+
T Consensus 177 ~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~ 242 (261)
T PLN02459 177 PGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETW 242 (261)
T ss_pred ccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHH
Confidence 47788999999999999999999999999999999999999998865
No 5
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=8.7e-32 Score=192.09 Aligned_cols=177 Identities=33% Similarity=0.608 Sum_probs=158.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
..++.+|+|.|+|||||||+|+.|++++++.+++.+++++.....+.+.+.....++..+...++++...++...+.+.+
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~ 82 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME 82 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 34678999999999999999999999999999999999999888788888888888899999999999999998887655
Q ss_pred CCeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHH
Q 029252 98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQ 172 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 172 (196)
..+||+||||.+..++..+..+ .+..++.+++|++|++++.+|+.+| ..+|.+++.+.+.+|++.|+....++++
T Consensus 83 ~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~ 162 (191)
T PRK14527 83 PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVD 162 (191)
T ss_pred CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 6789999999999988776643 4567888999999999999999999 4578888999999999999999999999
Q ss_pred HHHhcCcEEEEeCCCCceeEEe
Q 029252 173 YYEAKGKVRKVIFCSPIFILVI 194 (196)
Q Consensus 173 ~~~~~~~~~~id~~~~~e~v~~ 194 (196)
+|...+.++.||++.++++|+.
T Consensus 163 ~y~~~~~~~~id~~~~~~~v~~ 184 (191)
T PRK14527 163 YYEARGHLKRVDGLGTPDEVYA 184 (191)
T ss_pred HHHhcCCEEEEECCCCHHHHHH
Confidence 9998888999999999998753
No 6
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=1.7e-31 Score=189.42 Aligned_cols=172 Identities=29% Similarity=0.573 Sum_probs=156.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 100 (196)
+.|+|.|+|||||||+|+.|++++++.+++.+++++..+..+.+.+.....++..|..+++.+...++...+.+.+ .++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 3589999999999999999999999999999999999988888888888899999999999988888888887654 678
Q ss_pred EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (196)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (196)
||+||+|++.++...+.++ ....++.+|+|++|++++.+|+..| ..+|.+++++.+.+|+..|+....|++++|.
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~ 161 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYA 161 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999887653 3467999999999999999999999 5688999999999999999999999999999
Q ss_pred hcCcEEEEeCCCCceeEE
Q 029252 176 AKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 176 ~~~~~~~id~~~~~e~v~ 193 (196)
..+.++.||++.+.++|+
T Consensus 162 ~~~~~~~i~~~~~~~~v~ 179 (186)
T PRK14528 162 AQKKLSQVNGVGSLEEVT 179 (186)
T ss_pred hCCCEEEEECCCCHHHHH
Confidence 999999999999998765
No 7
>PLN02200 adenylate kinase family protein
Probab=100.00 E-value=2.2e-31 Score=194.51 Aligned_cols=177 Identities=64% Similarity=1.018 Sum_probs=157.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
...|.+|+|.|+|||||||+|+.|++++++.+++.++++++.+...++.+..+...+..|..+++++...++...+....
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~ 119 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD 119 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 33467899999999999999999999999999999999999888878788888888889999999988888888876555
Q ss_pred CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhc
Q 029252 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 177 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (196)
.++||+||+|.+..+...+.+.....|+.+++|++|++++.+|+..|..+|.+++.+.+.+|++.|+....+++++|...
T Consensus 120 ~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~ 199 (234)
T PLN02200 120 NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKK 199 (234)
T ss_pred CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999988887644457999999999999999999999556788889999999999999999999999887
Q ss_pred CcEEEEeCCCCceeEEe
Q 029252 178 GKVRKVIFCSPIFILVI 194 (196)
Q Consensus 178 ~~~~~id~~~~~e~v~~ 194 (196)
+.++.||+++++++|+.
T Consensus 200 ~~~~~IDa~~~~eeV~~ 216 (234)
T PLN02200 200 GKLYTINAVGTVDEIFE 216 (234)
T ss_pred CCEEEEECCCCHHHHHH
Confidence 78999999999988753
No 8
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=2.2e-31 Score=200.75 Aligned_cols=172 Identities=30% Similarity=0.559 Sum_probs=155.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF 101 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 101 (196)
.|+|.|+|||||||+|+.|++.+++.+++.+|+++..+..+++.+..+..++..|..++++++..++.+.+.+.+ ..+|
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~ 81 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGF 81 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCE
Confidence 589999999999999999999999999999999999988888899999999999999999999999999887654 6789
Q ss_pred EEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc--------CCCCCCcHHHHHHHHHHHHhcchhH
Q 029252 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN--------QGREDDNVETIRKRFKVFLESSLPV 170 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~--------~~r~~~~~~~~~~~~~~~~~~~~~~ 170 (196)
||||||++.+|...|..+ ....||++|+|++|++++++|+..|. ..|.+++.+.+.+|+..|+....++
T Consensus 82 ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PL 161 (333)
T PRK13808 82 ILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPL 161 (333)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHH
Confidence 999999999999877653 45689999999999999999999871 1467888999999999999999999
Q ss_pred HHHHHhcCcEEEEeCCCCceeEEe
Q 029252 171 VQYYEAKGKVRKVIFCSPIFILVI 194 (196)
Q Consensus 171 ~~~~~~~~~~~~id~~~~~e~v~~ 194 (196)
+++|...+.++.||+++++++|+.
T Consensus 162 l~~Y~e~~~lv~IDa~~siEEV~e 185 (333)
T PRK13808 162 VHYYSEKRKLLTVDGMMTIDEVTR 185 (333)
T ss_pred HHHhhccCcEEEEECCCCHHHHHH
Confidence 999988778999999999988753
No 9
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=5.5e-31 Score=190.56 Aligned_cols=170 Identities=35% Similarity=0.646 Sum_probs=153.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CCeE
Q 029252 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKF 101 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~ 101 (196)
|+|.|+|||||||+|+.|++++++.+++++|++++.+...++.+..+..++..|..+++++...++...+.+.. .++|
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ 81 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF 81 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence 88999999999999999999999999999999999888888888889999999999999999999999987633 6789
Q ss_pred EEeccCCCHHHHHHHHhhcCC-CCcEEEEEEcCHHHHHHHHhhcc-C----------------------------CCCCC
Q 029252 102 LIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRN-Q----------------------------GREDD 151 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~R~~~R~-~----------------------------~r~~~ 151 (196)
|+||||++..+...+.+ ... .++.+|+|++|++++.+|+..|. + +|.++
T Consensus 82 ilDGfPrt~~Qa~~l~~-~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD 160 (210)
T TIGR01351 82 ILDGFPRTLSQAEALDA-LLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDD 160 (210)
T ss_pred EEeCCCCCHHHHHHHHH-HhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCC
Confidence 99999999999998887 444 68999999999999999999982 0 37788
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEEe
Q 029252 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVI 194 (196)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~ 194 (196)
+++.+.+|++.|+.+..+++++|...+.++.||++.++++|+.
T Consensus 161 ~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~ 203 (210)
T TIGR01351 161 TEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWK 203 (210)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHH
Confidence 8999999999999999999999999889999999999988753
No 10
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=100.00 E-value=7.7e-31 Score=186.23 Aligned_cols=171 Identities=64% Similarity=1.058 Sum_probs=151.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 102 (196)
+|+|.|+|||||||+|+.|++++++.+++++|++++....+++.+..+..++..|..+++++...++...+....+++||
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v 80 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL 80 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence 48999999999999999999999999999999999998877778888888899999999999999998888755578899
Q ss_pred EeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcC
Q 029252 103 IDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178 (196)
Q Consensus 103 idg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (196)
+||+|++..+...|..+ ....|+++|||++|++++.+|+..| ..++.+++.+.+.+|+..|.....+++++|...+
T Consensus 81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~ 160 (183)
T TIGR01359 81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG 160 (183)
T ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999888877653 3457899999999999999999999 2366778889999999999999999999998877
Q ss_pred cEEEEeCCCCceeEE
Q 029252 179 KVRKVIFCSPIFILV 193 (196)
Q Consensus 179 ~~~~id~~~~~e~v~ 193 (196)
.++.||++.++++++
T Consensus 161 ~~~~Id~~~~~~~v~ 175 (183)
T TIGR01359 161 KVKEINAEGSVEEVF 175 (183)
T ss_pred CEEEEECCCCHHHHH
Confidence 899999999988764
No 11
>PRK14532 adenylate kinase; Provisional
Probab=99.98 E-value=1.1e-30 Score=186.05 Aligned_cols=171 Identities=32% Similarity=0.583 Sum_probs=153.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF 101 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 101 (196)
.|+|.|+|||||||+|+.|++++++.+++.++++++....+++.+..+..++..|..+++++...++...+.... +.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA 81 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence 589999999999999999999999999999999999888788888888888989999999999999988886544 7889
Q ss_pred EEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (196)
|+||||++.+++..+.++ .+..|+.+|+|++|++++.+|+..| ..+|+++..+.+.+|+..|..+..++++.|..
T Consensus 82 vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~ 161 (188)
T PRK14532 82 IFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAG 161 (188)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998877543 4567899999999999999999998 35788888899999999999999999999988
Q ss_pred cCcEEEEeCCCCceeEE
Q 029252 177 KGKVRKVIFCSPIFILV 193 (196)
Q Consensus 177 ~~~~~~id~~~~~e~v~ 193 (196)
.+.++.||++.++++++
T Consensus 162 ~~~~~~id~~~~~eev~ 178 (188)
T PRK14532 162 QGKLTEVDGMGSIEAVA 178 (188)
T ss_pred cCCEEEEECCCCHHHHH
Confidence 77899999999998765
No 12
>PRK14529 adenylate kinase; Provisional
Probab=99.98 E-value=1e-30 Score=188.26 Aligned_cols=171 Identities=27% Similarity=0.526 Sum_probs=152.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 102 (196)
.|+|.|+|||||||+++.|++++++.+++.++++++.+..+++.+..+..++..|..+++++...++.+.+.+.+.++||
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~i 81 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWL 81 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEE
Confidence 58999999999999999999999999999999999998888899999999999999999999999999999876688999
Q ss_pred EeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc----cC---------------------------CC
Q 029252 103 IDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ---------------------------GR 148 (196)
Q Consensus 103 idg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R----~~---------------------------~r 148 (196)
+||||++.+|+..|... ....++.+|+|++|++++.+|+..| .+ .|
T Consensus 82 LDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R 161 (223)
T PRK14529 82 LDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTR 161 (223)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccC
Confidence 99999999999987653 4567999999999999999999998 10 26
Q ss_pred CCCc-HHHHHHHHHHHHhc---chhHHHHHHh-----cCcEEEEeCCCCceeEE
Q 029252 149 EDDN-VETIRKRFKVFLES---SLPVVQYYEA-----KGKVRKVIFCSPIFILV 193 (196)
Q Consensus 149 ~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~id~~~~~e~v~ 193 (196)
.+++ ++.+++|++.|+.. ..+++++|.+ .+.++.||+++++++|+
T Consensus 162 ~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~ 215 (223)
T PRK14529 162 ADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIK 215 (223)
T ss_pred CCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHH
Confidence 7775 78999999999987 3467889985 66899999999998765
No 13
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.97 E-value=3.7e-30 Score=186.91 Aligned_cols=172 Identities=36% Similarity=0.668 Sum_probs=154.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF 101 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 101 (196)
.|+|.|+|||||||+|+.|++++++.+++++|++++....+++.+..+..++..|..+++++...++.+.+.+.+ ..+|
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~ 81 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGF 81 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCE
Confidence 589999999999999999999999999999999999888888888889999999999999999999999887654 4589
Q ss_pred EEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-----------------------------CCCC
Q 029252 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGRE 149 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-----------------------------~~r~ 149 (196)
|+||||++.++...+.+. ....++.+|+|++|.+++.+|+..|. .+|.
T Consensus 82 VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r~ 161 (215)
T PRK00279 82 LLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRA 161 (215)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCCC
Confidence 999999999998887542 45578899999999999999999982 1567
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEEe
Q 029252 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVI 194 (196)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~ 194 (196)
+++++.+.+|+..|+.++.++.++|...+.++.||++.++++|++
T Consensus 162 dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~ 206 (215)
T PRK00279 162 DDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFA 206 (215)
T ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHH
Confidence 888999999999999999999999998888999999999998764
No 14
>PRK02496 adk adenylate kinase; Provisional
Probab=99.97 E-value=2e-29 Score=178.98 Aligned_cols=171 Identities=31% Similarity=0.594 Sum_probs=152.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 100 (196)
+.|+|.|+|||||||+|+.|++++++.+++.+++++..+..+.+.+......+..|..+++++...++.+.+.+.+ ..+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence 4589999999999999999999999999999999999988888888888888999999999999999988886544 578
Q ss_pred EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhc
Q 029252 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 177 (196)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (196)
||+||||++..+...+... ....++.+++|++|++++.+|+..| ++.++.++.+.+|+..|..+..+++++|...
T Consensus 82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R--~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~ 159 (184)
T PRK02496 82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLAR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRDR 159 (184)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999887776553 2346899999999999999999999 7888888999999999999999999999887
Q ss_pred CcEEEEeCCCCceeEEe
Q 029252 178 GKVRKVIFCSPIFILVI 194 (196)
Q Consensus 178 ~~~~~id~~~~~e~v~~ 194 (196)
+.++.||+++++++|+.
T Consensus 160 ~~~~~Ida~~~~~~V~~ 176 (184)
T PRK02496 160 QKLLTIDGNQSVEAVTT 176 (184)
T ss_pred CCEEEEECCCCHHHHHH
Confidence 78999999999988753
No 15
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.97 E-value=2.9e-29 Score=182.21 Aligned_cols=173 Identities=23% Similarity=0.461 Sum_probs=154.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S 96 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ 96 (196)
..|+.|+|.|+|||||||+|+.|++++++.+++.++++++.....++.+..+..++..|..+++++...++...+.+ .
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence 45677999999999999999999999999999999999999888888999999999999999999999999998876 2
Q ss_pred C-CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc------------------------------
Q 029252 97 G-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN------------------------------ 145 (196)
Q Consensus 97 ~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~------------------------------ 145 (196)
. ..+||+||||++..+...+.. . ..++++++|++|.+++.+|+..|.
T Consensus 84 ~~~~g~iLDGfPRt~~Qa~~l~~-~-~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c 161 (229)
T PTZ00088 84 DCFKGFILDGFPRNLKQCKELGK-I-TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADC 161 (229)
T ss_pred ccCceEEEecCCCCHHHHHHHHh-c-CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcc
Confidence 3 688999999999999988876 3 478999999999999999999871
Q ss_pred ---------CCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCc-EEEE---eCCCCceeEE
Q 029252 146 ---------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK-VRKV---IFCSPIFILV 193 (196)
Q Consensus 146 ---------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i---d~~~~~e~v~ 193 (196)
..|.+++++.+.+|++.|+....+++++|...+. ++.+ |++.++++|+
T Consensus 162 ~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~ 222 (229)
T PTZ00088 162 EGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFY 222 (229)
T ss_pred cccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHH
Confidence 0477888999999999999999999999999887 8777 7888887654
No 16
>PRK14526 adenylate kinase; Provisional
Probab=99.97 E-value=2.4e-29 Score=180.80 Aligned_cols=170 Identities=28% Similarity=0.530 Sum_probs=151.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF 101 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 101 (196)
.|+|.|+|||||||+++.|++.+++.+++.++++++....+++.+..+..++..|..+++++...++.+.+.... ..+|
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ 81 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF 81 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence 488999999999999999999999999999999999888888889999999999999999999999999987544 6789
Q ss_pred EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc-----------------------------CCCCCCc
Q 029252 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDN 152 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-----------------------------~~r~~~~ 152 (196)
|+||||++.++...+.. .... ..++++++|++++.+|+..|. .+|.+++
T Consensus 82 ilDGfPR~~~Qa~~l~~-~~~~-~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~ 159 (211)
T PRK14526 82 ILDGFPRNINQAKALDK-FLPN-IKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK 159 (211)
T ss_pred EEECCCCCHHHHHHHHH-hcCC-CEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence 99999999999998886 3222 357889999999999999981 1488999
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEEe
Q 029252 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVI 194 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~ 194 (196)
++.+++|++.|+....+++++|...+.++.||++.++++|+.
T Consensus 160 ~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~ 201 (211)
T PRK14526 160 EESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKK 201 (211)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHH
Confidence 999999999999999999999998889999999999988753
No 17
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.97 E-value=1.6e-28 Score=175.84 Aligned_cols=168 Identities=40% Similarity=0.712 Sum_probs=150.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeEE
Q 029252 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFL 102 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i 102 (196)
|+|.|+|||||||+|+.|++++++.+++.+++++.......+.+..+...+..+...+.++...++...+.... ..+||
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~v 81 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGFI 81 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCEE
Confidence 89999999999999999999999999999999999888777788888888888889999998999988887542 67899
Q ss_pred EeccCCCHHHHHHHHhhcCC---CCcEEEEEEcCHHHHHHHHhhcc-C--------------------CCCCCcHHHHHH
Q 029252 103 IDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNRN-Q--------------------GREDDNVETIRK 158 (196)
Q Consensus 103 idg~~~~~~~~~~~~~~~~~---~~~~~i~l~~~~~~~~~R~~~R~-~--------------------~r~~~~~~~~~~ 158 (196)
+||||.+..+...+.+ ... .++++|+|++|++++.+|+..|. . .+.++..+.+++
T Consensus 82 ldg~Pr~~~q~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~ 160 (194)
T cd01428 82 LDGFPRTVDQAEALDE-LLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKK 160 (194)
T ss_pred EeCCCCCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHH
Confidence 9999999999888887 333 78999999999999999999992 1 377888899999
Q ss_pred HHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 159 RFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
|+..|..+..+++++|...+.++.||++.++++|
T Consensus 161 R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 161 RLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 9999999999999999988899999999998875
No 18
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.96 E-value=1.6e-27 Score=169.84 Aligned_cols=172 Identities=47% Similarity=0.865 Sum_probs=146.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--CC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GN 98 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 98 (196)
..+|+|.|+|||||||+|+.|++.+++.+++.+++++.......+.+..+...+..+...+.......+...+... .+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTS 82 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcC
Confidence 4689999999999999999999999999999999999876666666677777778888888877777776665432 37
Q ss_pred CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (196)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (196)
.+||+||+|....+...+.. ....|+.+|||++|++++.+|+..| ..+|.++..+.+.+|+..|+.+..++++.|..
T Consensus 83 ~~~i~dg~~~~~~q~~~~~~-~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~ 161 (188)
T TIGR01360 83 KGFLIDGYPREVKQGEEFER-RIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYET 161 (188)
T ss_pred CeEEEeCCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 88999999999888887776 5567899999999999999999998 25678888899999999999999899898987
Q ss_pred cCcEEEEeCCCCceeEE
Q 029252 177 KGKVRKVIFCSPIFILV 193 (196)
Q Consensus 177 ~~~~~~id~~~~~e~v~ 193 (196)
.+.++.||++.++++++
T Consensus 162 ~~~~~~id~~~~~~~v~ 178 (188)
T TIGR01360 162 KGKLRKINAEGTVDDVF 178 (188)
T ss_pred CCCEEEEECCCCHHHHH
Confidence 77899999999988764
No 19
>PRK14530 adenylate kinase; Provisional
Probab=99.96 E-value=6.3e-28 Score=175.21 Aligned_cols=169 Identities=35% Similarity=0.593 Sum_probs=142.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-----cCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-----SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (196)
.+.|+|.|+|||||||+++.|++++++.+++.+++++.... ....++. ....+..|..+++++...++...+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~- 80 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALS- 80 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHh-
Confidence 45799999999999999999999999999999999998752 2333333 4556778888999888888888775
Q ss_pred cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-c----------------------------C
Q 029252 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N----------------------------Q 146 (196)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~----------------------------~ 146 (196)
...+||+||||.+.++...+.. ...++.+|||++|.+++.+|+..| . .
T Consensus 81 -~~~~~IldG~pr~~~q~~~l~~--~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~ 157 (215)
T PRK14530 81 -DADGFVLDGYPRNLEQAEYLES--ITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELI 157 (215)
T ss_pred -cCCCEEEcCCCCCHHHHHHHHH--hcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCccc
Confidence 3568999999999998887765 235889999999999999999887 1 1
Q ss_pred CCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEEe
Q 029252 147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVI 194 (196)
Q Consensus 147 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~ 194 (196)
.|.+++++.+++|+..|+.+..+++++|...+.++.||+++++++|+.
T Consensus 158 ~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~ 205 (215)
T PRK14530 158 QRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWA 205 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHH
Confidence 467788999999999999999999999998888999999999987753
No 20
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.96 E-value=1e-27 Score=165.07 Aligned_cols=146 Identities=44% Similarity=0.850 Sum_probs=129.8
Q ss_pred EEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCeEEEe
Q 029252 26 VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLID 104 (196)
Q Consensus 26 i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~iid 104 (196)
|.|+|||||||+|+.|++++++.+++.++++++.....++.+..+..++..|..+|+++...++...+... ..++||+|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 68999999999999999999999999999999999889999999999999999999999999999999866 48999999
Q ss_pred ccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcC
Q 029252 105 GFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178 (196)
Q Consensus 105 g~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (196)
|||++.++...|.+. ....|+.+|+|++|++++.+|+.. ++.+.+++|++.|+.+..+++++|...+
T Consensus 81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~-------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g 150 (151)
T PF00406_consen 81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ-------DNEEVIKKRLEEYRENTEPILDYYKEQG 150 (151)
T ss_dssp SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT-------GSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999887762 567789999999999999999885 5678999999999999999999998765
No 21
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.6e-26 Score=161.66 Aligned_cols=165 Identities=34% Similarity=0.628 Sum_probs=149.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 100 (196)
+.|+|.|+|||||||+|+.|+++++.+|++.+++++......++.+.....++..+..+++.+...++..++...+ ..+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999998765 237
Q ss_pred EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCC-CCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQG-REDDNVETIRKRFKVFLESSLPVVQYYEA 176 (196)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (196)
+|+||||++..+...+.+. .+...+.++.++++.+.+..|+..| . |.+++++.+.+|+..|+....+++.+|.
T Consensus 81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r--~~r~dd~~~~~~~R~~~y~~~~~pli~~y~- 157 (178)
T COG0563 81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGR--RVREDDNEETVKKRLKVYHEQTAPLIEYYS- 157 (178)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCc--cccccCCHHHHHHHHHHHHhcccchhhhhe-
Confidence 9999999999999888764 3467899999999999999999998 4 8899999999999999999999999887
Q ss_pred cCcEEEEeCCCCceeEE
Q 029252 177 KGKVRKVIFCSPIFILV 193 (196)
Q Consensus 177 ~~~~~~id~~~~~e~v~ 193 (196)
+.||+..++++++
T Consensus 158 ----~~id~~~~i~~v~ 170 (178)
T COG0563 158 ----VTIDGSGEIEEVL 170 (178)
T ss_pred ----eeccCCCCHHHHH
Confidence 7899998887764
No 22
>PLN02842 nucleotide kinase
Probab=99.95 E-value=4.1e-26 Score=180.02 Aligned_cols=166 Identities=30% Similarity=0.613 Sum_probs=148.9
Q ss_pred EEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CCeEE
Q 029252 25 FVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKFL 102 (196)
Q Consensus 25 ~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i 102 (196)
+|.|+|||||||+|+.|+++++..+++.+++++..+..+++.+..+.+++..|..+++++...++.+++.... ..+||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 4799999999999999999999999999999999988899999999999999999999999999988886533 57799
Q ss_pred EeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-c------------------------CCCCCCcHHHHH
Q 029252 103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N------------------------QGREDDNVETIR 157 (196)
Q Consensus 103 idg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~------------------------~~r~~~~~~~~~ 157 (196)
+||||++..+...+.. ....|+++|+|++|++++.+|+..| . .+|.+++++.++
T Consensus 81 LDGfPRt~~Qa~~Le~-~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik 159 (505)
T PLN02842 81 LDGYPRSFAQAQSLEK-LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK 159 (505)
T ss_pred EeCCCCcHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence 9999999999888877 6778999999999999999999887 1 146788999999
Q ss_pred HHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 158 KRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+|++.|+.+..++++.|.. .++.||+++++++|+
T Consensus 160 kRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVf 193 (505)
T PLN02842 160 ARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVF 193 (505)
T ss_pred HHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHH
Confidence 9999999999999999964 488999999998765
No 23
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.91 E-value=1.1e-22 Score=145.28 Aligned_cols=172 Identities=37% Similarity=0.627 Sum_probs=154.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GN 98 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 98 (196)
++..+++.|+|||||+|+|..+++.++..+++++|++|+.+..+++.+.....++..|..+++++...++...+... ..
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999988777777654 37
Q ss_pred CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc----cC-------------------------CCC
Q 029252 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQ-------------------------GRE 149 (196)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R----~~-------------------------~r~ 149 (196)
++|++||+|++..+...+.+ ....++.++.|++|++.+.+|+..| .. .|.
T Consensus 94 ~~~ildg~Prt~~qa~~l~~-~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~ 172 (235)
T KOG3078|consen 94 KGFILDGFPRTVQQAEELLD-RIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRE 172 (235)
T ss_pred cccccCCCCcchHHHHHHHH-ccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCc
Confidence 89999999999998888777 8899999999999999999999998 11 356
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
++.++.+..|+..|++...+++++|...+.+..+++.. .++|+
T Consensus 173 dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~ 215 (235)
T KOG3078|consen 173 DDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVF 215 (235)
T ss_pred cccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhH
Confidence 78899999999999999999999999999888888877 55543
No 24
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.79 E-value=1.4e-18 Score=132.39 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=110.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (196)
++.+|++.|+|||||||+|+.|++++ +..+++.|++.... ......+.. .+...............+...+. .+
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~--~g 75 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSL-FGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK--SG 75 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHh-cCCCccccc--ccChHHHHHHHHHHHHHHHHHHH--cC
Confidence 46789999999999999999999999 89999997754443 221111100 00000000001122333444443 36
Q ss_pred CeEEEeccCCCHHHHHHHHhh-cCCCCc-EEEEEEcCHHHHHHHHhhccCCCCCCcHHHHH---HHHHHHHhcchhHHHH
Q 029252 99 DKFLIDGFPRNEENRAAFEAV-TKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIR---KRFKVFLESSLPVVQY 173 (196)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~-~~~~~~-~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~---~~~~~~~~~~~~~~~~ 173 (196)
..+|+|+++....+...+.++ ...... .+++|++|.+++.+|+.+| +....+.+.+. ++++.+.....|++..
T Consensus 76 ~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~ 153 (300)
T PHA02530 76 KSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR--GERAVPEDVLRSMFKQMKEYRGLVWPVYTA 153 (300)
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc--CcCCCCHHHHHHHHHHHHHhcCCCCceecc
Confidence 789999999888887776653 222222 3799999999999999999 55556666666 6777777777788777
Q ss_pred HHhcCcEEEEeCCCCceeE
Q 029252 174 YEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 174 ~~~~~~~~~id~~~~~e~v 192 (196)
+....+.+.+|.+.++.+.
T Consensus 154 ~~~~~~~~~~D~dgtl~~~ 172 (300)
T PHA02530 154 DPGLPKAVIFDIDGTLAKM 172 (300)
T ss_pred CCCCCCEEEEECCCcCcCC
Confidence 6655578888888777653
No 25
>PRK01184 hypothetical protein; Provisional
Probab=99.78 E-value=4.9e-17 Score=115.43 Aligned_cols=159 Identities=25% Similarity=0.350 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CCc-----chHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (196)
++|+|+|+|||||||+++ +++++++.+++.+|++++.... +.+ ++........ . +.......++...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~-~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--E-LGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--H-HChHHHHHHHHHHHHh
Confidence 479999999999999987 7789999999999999988643 211 2222222221 1 1122333333344444
Q ss_pred cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCC--CcHHHHHHHHHHHHhcchhHHHH
Q 029252 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED--DNVETIRKRFKVFLESSLPVVQY 173 (196)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~ 173 (196)
..+..+|+|++ ....+...+.+ ....+..+|++++|++++.+|+..| ++.+ .+.+.+..+...... .+..+.
T Consensus 78 ~~~~~vvidg~-r~~~e~~~~~~-~~~~~~~~i~v~~~~~~~~~Rl~~R--~~~~d~~~~~~~~~r~~~q~~--~~~~~~ 151 (184)
T PRK01184 78 KGDEVVVIDGV-RGDAEVEYFRK-EFPEDFILIAIHAPPEVRFERLKKR--GRSDDPKSWEELEERDERELS--WGIGEV 151 (184)
T ss_pred cCCCcEEEeCC-CCHHHHHHHHH-hCCcccEEEEEECCHHHHHHHHHHc--CCCCChhhHHHHHHHHHHHhc--cCHHHH
Confidence 44688999998 67777777766 3334567999999999999999988 4432 245666666544321 112223
Q ss_pred HHhcCcEEEEeCCCCceeE
Q 029252 174 YEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 174 ~~~~~~~~~id~~~~~e~v 192 (196)
+ ...++ +|+++.+++++
T Consensus 152 ~-~~ad~-vI~N~~~~~~l 168 (184)
T PRK01184 152 I-ALADY-MIVNDSTLEEF 168 (184)
T ss_pred H-HhcCE-EEeCCCCHHHH
Confidence 3 33334 55566666654
No 26
>PRK13973 thymidylate kinase; Provisional
Probab=99.76 E-value=1.5e-16 Score=115.36 Aligned_cols=164 Identities=21% Similarity=0.300 Sum_probs=98.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh---CCcEecH--------HHHHHHHHHcC--CcchHHHHHHHHcCCCCCHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA--------GDLLRAEIKSG--SENGTMIQNMIKEGKIVPSEVTI 86 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~--------~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 86 (196)
++++|+|.|++||||||+++.|++++ |..++.. ++.+++.+..+ ...+.....++..+ ...+...
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~ 79 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE 79 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence 36899999999999999999999999 6655543 55555544331 11222222222111 1112223
Q ss_pred HHHHHHHHhcCCCeEEEeccCCC------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccC----CC
Q 029252 87 KLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQ----GR 148 (196)
Q Consensus 87 ~~~~~~l~~~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~----~r 148 (196)
..+...+. .+..||.|+|..+ .++...+... ....||+++||++|++++.+|+.+|.. ++
T Consensus 80 ~~i~~~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~ 157 (213)
T PRK13973 80 EVIRPALA--RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDR 157 (213)
T ss_pred HHHHHHHH--CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCc
Confidence 34455554 4778888975411 1233333321 336799999999999999999999821 12
Q ss_pred CC-CcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 149 ED-DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 149 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.+ ...+.++++.+.|.. +.+++ ...+.+||++.++++|.
T Consensus 158 ~e~~~~~~~~~~~~~y~~----l~~~~--~~~~~~Ida~~~~e~V~ 197 (213)
T PRK13973 158 FEKEDLAFHEKRREAFLQ----IAAQE--PERCVVIDATASPEAVA 197 (213)
T ss_pred hhhchHHHHHHHHHHHHH----HHHhC--CCcEEEEcCCCCHHHHH
Confidence 22 233444455555543 32322 23588999999998764
No 27
>PRK06217 hypothetical protein; Validated
Probab=99.74 E-value=1.5e-16 Score=112.82 Aligned_cols=103 Identities=19% Similarity=0.277 Sum_probs=73.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
+.|+|.|+|||||||+++.|+++++..+++.|++++.. .+.++. ...+.+.....+...+. .+..|
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~~ 67 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLR--PREGW 67 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHh--cCCCE
Confidence 45999999999999999999999999999999888643 111110 11233333444444443 35679
Q ss_pred EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
|+||++... ... ....++.+|||++|.+++..|+..|
T Consensus 68 vi~G~~~~~--~~~----~~~~~d~~i~Ld~~~~~~~~Rl~~R 104 (183)
T PRK06217 68 VLSGSALGW--GDP----LEPLFDLVVFLTIPPELRLERLRLR 104 (183)
T ss_pred EEEccHHHH--HHH----HHhhCCEEEEEECCHHHHHHHHHcC
Confidence 999987532 111 2234788999999999999999998
No 28
>PRK06762 hypothetical protein; Provisional
Probab=99.74 E-value=2.3e-16 Score=110.20 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=89.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
||++|+|.|+|||||||+|+.|++++ ++.+++.|.+.......... ................+. .
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~--~ 67 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDG-----------PGNLSIDLIEQLVRYGLG--H 67 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCC-----------CCCcCHHHHHHHHHHHHh--C
Confidence 57899999999999999999999998 45667765544333211000 011122233333333333 3
Q ss_pred CCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCC-CCCcHHHHHHHHHHHHhcchhHHHHH
Q 029252 98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGR-EDDNVETIRKRFKVFLESSLPVVQYY 174 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (196)
+..+|+|+..........+..+ ....+..++||++|.+++.+|..+| ++ ...+++.+..+++... .+ +
T Consensus 68 g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R--~~~~~~~~~~l~~~~~~~~----~~---~ 138 (166)
T PRK06762 68 CEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTR--PKSHEFGEDDMRRWWNPHD----TL---G 138 (166)
T ss_pred CCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcc--cccccCCHHHHHHHHhhcC----Cc---C
Confidence 6789999865444333333332 3333567999999999999999999 33 2234566666544432 11 1
Q ss_pred HhcCcEEEEeCCCCceeEE
Q 029252 175 EAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 175 ~~~~~~~~id~~~~~e~v~ 193 (196)
. ...+.++.+.++++++
T Consensus 139 ~--~~~~~~~~~~~~~~v~ 155 (166)
T PRK06762 139 V--IGETIFTDNLSLKDIF 155 (166)
T ss_pred C--CCeEEecCCCCHHHHH
Confidence 0 1245556666776654
No 29
>PRK03839 putative kinase; Provisional
Probab=99.73 E-value=1.6e-16 Score=112.43 Aligned_cols=140 Identities=20% Similarity=0.323 Sum_probs=87.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCeE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKF 101 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~ 101 (196)
.|+|.|+|||||||+++.|++++++.+++.|+++++. ........ .+. .....+...+.+ ..+..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-~~~~~~~~-------~~~-----~~~~~l~~~~~~~~~~~~v 68 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-GIGEEKDD-------EME-----IDFDKLAYFIEEEFKEKNV 68 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-CCcccCCh-------hhh-----cCHHHHHHHHHHhccCCCE
Confidence 6999999999999999999999999999999988653 11111100 001 112223222222 125669
Q ss_pred EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHH-HHHHhcchhHHHHHHhcCcE
Q 029252 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF-KVFLESSLPVVQYYEAKGKV 180 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 180 (196)
|+||+... ...++.+|||+++++++.+|+..| +.. . ..+.+.+ ..+.. ....+.|.....+
T Consensus 69 IidG~~~~-----------l~~~~~vi~L~~~~~~~~~Rl~~R--~~~--~-~~~~~~~~~~~~~--~~~~~~~~~r~~~ 130 (180)
T PRK03839 69 VLDGHLSH-----------LLPVDYVIVLRAHPKIIKERLKER--GYS--K-KKILENVEAELVD--VCLCEALEEKEKV 130 (180)
T ss_pred EEEecccc-----------ccCCCEEEEEECCHHHHHHHHHHc--CCC--H-HHHHHHHHHHHHH--HHHHHHHHhcCCE
Confidence 99996421 224788999999999999999988 321 1 1111111 11111 1123445556678
Q ss_pred EEEeCC-CCceeEE
Q 029252 181 RKVIFC-SPIFILV 193 (196)
Q Consensus 181 ~~id~~-~~~e~v~ 193 (196)
+.||++ .++++++
T Consensus 131 ~~Id~~~~s~eev~ 144 (180)
T PRK03839 131 IEVDTTGKTPEEVV 144 (180)
T ss_pred EEEECCCCCHHHHH
Confidence 999996 5877664
No 30
>PRK08118 topology modulation protein; Reviewed
Probab=99.73 E-value=2.1e-16 Score=110.18 Aligned_cols=141 Identities=17% Similarity=0.245 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
+.|+|.|+|||||||+|+.|++.++..+++.|++++.. + ....+.+....++...+. ...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~---~-------------w~~~~~~~~~~~~~~~~~---~~~w 62 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP---N-------------WEGVPKEEQITVQNELVK---EDEW 62 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc---C-------------CcCCCHHHHHHHHHHHhc---CCCE
Confidence 36999999999999999999999999999998887642 0 012233333445554443 5679
Q ss_pred EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--c-CCCCC-----CcHH----HHHHHHHHHHhcchh
Q 029252 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--N-QGRED-----DNVE----TIRKRFKVFLESSLP 169 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~-~~r~~-----~~~~----~~~~~~~~~~~~~~~ 169 (196)
|+||.+...-. . ....+|.+|||++|.++|..|+..| . .+... ...+ .+.+++..|....++
T Consensus 63 VidG~~~~~~~-~-----~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~~~~~~g~~e~~~~~~l~wi~~~~~~~r~ 136 (167)
T PRK08118 63 IIDGNYGGTMD-I-----RLNAADTIIFLDIPRTICLYRAFKRRVQYRGKTRPDMGAGCEEKFDLQFFKWIWEYPKTKRP 136 (167)
T ss_pred EEeCCcchHHH-H-----HHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCCCCCCCCCcccCCHHHHHHHHhCchhhhH
Confidence 99996542211 1 1224899999999999999999998 1 22211 1112 466666666665555
Q ss_pred HH----HHHHhcCcEEEEeCCC
Q 029252 170 VV----QYYEAKGKVRKVIFCS 187 (196)
Q Consensus 170 ~~----~~~~~~~~~~~id~~~ 187 (196)
.. +.|....+++.+.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~l~~~~ 158 (167)
T PRK08118 137 SILKRLNQLSEEKDIVILKSRN 158 (167)
T ss_pred HHHHHHHhcCCCCeEEEECCHH
Confidence 32 2222222456665543
No 31
>PRK13949 shikimate kinase; Provisional
Probab=99.73 E-value=6.6e-16 Score=107.85 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=89.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
.|+|.|+|||||||+++.|++.+++.+++.|+++...... .+...+ ..|..........++.+ +.. ...+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~------~~~~~~~~~g~~~fr~~e~~~l~~-l~~--~~~~ 73 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK------TVGDIFAERGEAVFRELERNMLHE-VAE--FEDV 73 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc------cHHHHHHHhCHHHHHHHHHHHHHH-HHh--CCCE
Confidence 5999999999999999999999999999999887765322 122222 22222223333444444 221 2344
Q ss_pred EE-ec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc---HHHHHHHHHHHHhcchhHHHHHH
Q 029252 102 LI-DG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN---VETIRKRFKVFLESSLPVVQYYE 175 (196)
Q Consensus 102 ii-dg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 175 (196)
|+ .| .+...+....+.+ .+++|||++|.+++.+|+..+..+|+... .+.+...+...+. .....|.
T Consensus 74 vis~Ggg~~~~~~~~~~l~~-----~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~---~R~~~Y~ 145 (169)
T PRK13949 74 VISTGGGAPCFFDNMELMNA-----SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALE---KRAPFYR 145 (169)
T ss_pred EEEcCCcccCCHHHHHHHHh-----CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHH---HHHHHHH
Confidence 54 54 4455556666654 46799999999999999975422444321 2222222333332 3334565
Q ss_pred hcCcEEEEeCCC-CceeE
Q 029252 176 AKGKVRKVIFCS-PIFIL 192 (196)
Q Consensus 176 ~~~~~~~id~~~-~~e~v 192 (196)
. .+ +.||.+. +.+++
T Consensus 146 ~-ad-~~id~~~~~~~e~ 161 (169)
T PRK13949 146 Q-AK-IIFNADKLEDESQ 161 (169)
T ss_pred h-CC-EEEECCCCCHHHH
Confidence 5 44 5667653 54443
No 32
>PRK04040 adenylate kinase; Provisional
Probab=99.71 E-value=2.7e-16 Score=111.48 Aligned_cols=137 Identities=18% Similarity=0.289 Sum_probs=88.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCCc--chHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSE--NGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~--~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (196)
+++|+|+|+|||||||+++.|++++ ++.+++.+++++.......- ........ ......-+..+....+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 79999999998776544221 11222111 1111111222333333322
Q ss_pred -CCCeEEEeccCCCHHH--------HHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHH
Q 029252 97 -GNDKFLIDGFPRNEEN--------RAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFL 164 (196)
Q Consensus 97 -~~~~~iidg~~~~~~~--------~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~~~~~ 164 (196)
.+..+|+|++...... ...+ ....|+.+|++.+++++..+|+... .++|..++.+.+..+++...
T Consensus 78 ~~~~~~~~~~h~~i~~~~g~~~~~~~~~~---~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~ 152 (188)
T PRK04040 78 AGEGPVIVDTHATIKTPAGYLPGLPEWVL---EELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNR 152 (188)
T ss_pred hcCCCEEEeeeeeeccCCCCcCCCCHHHH---hhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHH
Confidence 2556899985432111 1111 3447899999999999999988852 23778788888888776544
No 33
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.70 E-value=3.2e-15 Score=100.34 Aligned_cols=111 Identities=23% Similarity=0.358 Sum_probs=77.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
++|.|.|+|||||||+|+.||+++|+.+++.++++|.....-.-.-..+..+-.....+ +...+.-...+.. ...+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~i--D~~iD~rq~e~a~--~~nv 76 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEI--DKEIDRRQKELAK--EGNV 76 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchh--hHHHHHHHHHHHH--cCCe
Confidence 47899999999999999999999999999999999998665222222333332222222 2223333333332 6678
Q ss_pred EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
|++|. ...|.. ...+++.|||.+|.++..+|+..|
T Consensus 77 Vlegr------LA~Wi~--k~~adlkI~L~Apl~vRa~Ria~R 111 (179)
T COG1102 77 VLEGR------LAGWIV--REYADLKIWLKAPLEVRAERIAKR 111 (179)
T ss_pred EEhhh------hHHHHh--ccccceEEEEeCcHHHHHHHHHHh
Confidence 89874 233332 246789999999999999999999
No 34
>PLN02924 thymidylate kinase
Probab=99.70 E-value=1e-15 Score=110.96 Aligned_cols=160 Identities=20% Similarity=0.278 Sum_probs=91.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHH-HH----------H
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-VT----------I 86 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~ 86 (196)
.+++++|+|+|++||||||+++.|++.++...+.. ..++.. ..++..++.+...+..+...... .. .
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~ep-~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~ 90 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRFP-DRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKR 90 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeCC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999996432222 111111 11344555555555433222111 10 1
Q ss_pred HHHHHHHHhcCCCeEEEeccCCCH-----------HHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHH
Q 029252 87 KLLQKAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 155 (196)
Q Consensus 87 ~~~~~~l~~~~~~~~iidg~~~~~-----------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~ 155 (196)
..+..++. .+..||.|.|..+- +....+.. ....||++|||++|++++.+|...+ +...+.. .
T Consensus 91 ~~I~pal~--~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~-~~~~PDlvi~Ld~~~~~a~~R~~~~--~~~~E~~-~ 164 (220)
T PLN02924 91 SLMERKLK--SGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEV-GLPAPDLVLYLDISPEEAAERGGYG--GERYEKL-E 164 (220)
T ss_pred HHHHHHHH--CCCEEEEccchhHHHHHHHhcCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccC--ccccccH-H
Confidence 22333333 47889999865421 11122222 4567999999999999999996533 1112222 2
Q ss_pred HHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 156 IRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
..+++...+ ..+.. ..+.+||++.++++|.
T Consensus 165 ~~~rv~~~Y-------~~la~-~~~~vIDa~~sieeV~ 194 (220)
T PLN02924 165 FQKKVAKRF-------QTLRD-SSWKIIDASQSIEEVE 194 (220)
T ss_pred HHHHHHHHH-------HHHhh-cCEEEECCCCCHHHHH
Confidence 222222221 11222 3588899999988764
No 35
>PRK13975 thymidylate kinase; Provisional
Probab=99.70 E-value=2.3e-15 Score=107.89 Aligned_cols=156 Identities=18% Similarity=0.229 Sum_probs=85.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH----------HH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----------IK 87 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 87 (196)
|+++|+|.|++||||||+++.|+++++... ...+ ...++.+.+.+..+...+..+. ..
T Consensus 1 m~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~----------~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~ 70 (196)
T PRK13975 1 MNKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTD----------GKIGKLIREILSGSKCDKETLALLFAADRVEHVK 70 (196)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCC----------ChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999998432 2211 1122233333322111110000 11
Q ss_pred HHHHHHHhcCCCeEEEeccCCC-----------HHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC-cHHH
Q 029252 88 LLQKAMEESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD-NVET 155 (196)
Q Consensus 88 ~~~~~l~~~~~~~~iidg~~~~-----------~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~-~~~~ 155 (196)
.+...+. ...+|+|++... .+....+.. ....|+++|||++|++++.+|+..| +++.. ..+.
T Consensus 71 ~i~~~~~---~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~-~~~~pd~vi~L~~~~e~~~~Rl~~r--~~~~~~~~~~ 144 (196)
T PRK13975 71 EIEEDLK---KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINR-YAKKPDLVFLLDVDIEEALKRMETR--DKEIFEKKEF 144 (196)
T ss_pred HHHHHHc---CCEEEEECchhHHHHHhcccCCCHHHHHHHHh-CCCCCCEEEEEcCCHHHHHHHHhcc--CccccchHHH
Confidence 1222222 467889975422 111112222 3456899999999999999999988 43322 2233
Q ss_pred HHHHHHHHHhcchhHHHHHHhcCcEEEEeCC-CCceeEE
Q 029252 156 IRKRFKVFLESSLPVVQYYEAKGKVRKVIFC-SPIFILV 193 (196)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~e~v~ 193 (196)
..+....|.... . ...|.....++.||++ .++++++
T Consensus 145 ~~~~~~~y~~~~-~-~~~~~~~~~~~~Id~~~~~~eev~ 181 (196)
T PRK13975 145 LKKVQEKYLELA-N-NEKFMPKYGFIVIDTTNKSIEEVF 181 (196)
T ss_pred HHHHHHHHHHHH-h-hcccCCcCCEEEEECCCCCHHHHH
Confidence 333333333211 1 1112223357899986 7877654
No 36
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.70 E-value=7.6e-16 Score=105.68 Aligned_cols=111 Identities=18% Similarity=0.316 Sum_probs=78.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
.+.|+|+|++||||||+.+.||+.++..+++.|.++.+... ..+...+ ..|...+...-...+...+.. +.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g------~sI~eIF~~~GE~~FR~~E~~vl~~l~~~--~~ 73 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG------MSIAEIFEEEGEEGFRRLETEVLKELLEE--DN 73 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC------cCHHHHHHHHhHHHHHHHHHHHHHHHhhc--CC
Confidence 35699999999999999999999999999999999988732 3333333 234444445555566665542 23
Q ss_pred eEEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 100 KFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 100 ~~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.||--| .....+.+..+.. .+ .+|||++|.+++++|+...
T Consensus 74 ~ViaTGGG~v~~~enr~~l~~-~g----~vv~L~~~~e~l~~Rl~~~ 115 (172)
T COG0703 74 AVIATGGGAVLSEENRNLLKK-RG----IVVYLDAPFETLYERLQRD 115 (172)
T ss_pred eEEECCCccccCHHHHHHHHh-CC----eEEEEeCCHHHHHHHhccc
Confidence 444333 4455566666665 22 7999999999999999843
No 37
>PRK13974 thymidylate kinase; Provisional
Probab=99.69 E-value=4.3e-16 Score=112.85 Aligned_cols=164 Identities=21% Similarity=0.278 Sum_probs=103.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHHHHcCCcchHHHHHHHHcC--CCCCHHHHHH---------
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGSENGTMIQNMIKEG--KIVPSEVTIK--------- 87 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------- 87 (196)
+.+|+|.|++||||||+++.|++.+...-.. ..+......+.+.+.++.++.++... ...++.....
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 5799999999999999999999988421100 00111111123456777777777422 2222222111
Q ss_pred ----HHHHHHHhcCCCeEEEecc----------CCCHH--HHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCC
Q 029252 88 ----LLQKAMEESGNDKFLIDGF----------PRNEE--NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE 149 (196)
Q Consensus 88 ----~~~~~l~~~~~~~~iidg~----------~~~~~--~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~ 149 (196)
.+...+. .+..+|.|.| +...+ ....+... ....|+++|||++|++++.+|+..| .
T Consensus 83 ~~~~~i~~~l~--~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R----~ 156 (212)
T PRK13974 83 HVSKIIRPALE--NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNR----K 156 (212)
T ss_pred HHHHHHHHHHH--CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc----c
Confidence 1222232 2556666654 33221 23333321 3457999999999999999999877 2
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
++ .+.++...|+....+.+..|.+.+.+..||++.+++++.
T Consensus 157 dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~ 197 (212)
T PRK13974 157 PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETIS 197 (212)
T ss_pred cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHH
Confidence 22 244566677888888888898888899999999988764
No 38
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.69 E-value=5.5e-16 Score=105.60 Aligned_cols=113 Identities=20% Similarity=0.367 Sum_probs=75.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcch---HHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG---TMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
+|+|.|+|||||||+++.|+++++..+++.|++.........+.. ...... ........+...+. .+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~--~g~ 71 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALR--NGN 71 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHH--TT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHH--cCC
Confidence 689999999999999999999999999999887776533211110 000000 01122344444454 477
Q ss_pred eEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 100 KFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.+|+|...........+.++ .......+|+|+++.+++.+|+..|
T Consensus 72 ~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (143)
T PF13671_consen 72 SVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR 118 (143)
T ss_dssp EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred CceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence 79999877666666665554 2333456999999999999999999
No 39
>PRK08233 hypothetical protein; Provisional
Probab=99.69 E-value=3.9e-16 Score=110.54 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=86.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCC---HHHHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP---SEVTIKLLQKAMEE 95 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 95 (196)
++.+|+|.|+|||||||+|+.|++.++ ..++..|+..... .......+...+.... ...+...+...+..
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN------CPEDICKWIDKGANYSEWVLTPLIKDIQELIAK 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc------CchhhhhhhhccCChhhhhhHHHHHHHHHHHcC
Confidence 458899999999999999999999996 3333332221110 0011222222222211 11222333333321
Q ss_pred cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHH-
Q 029252 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY- 174 (196)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (196)
.....+|+|+ +....... + ...+|.+|||++|.+++.+|+..| ...+.+.+.+.+++..|.....+.+..+
T Consensus 76 ~~~~~vivd~-~~~~~~~~-~----~~~~d~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 147 (182)
T PRK08233 76 SNVDYIIVDY-PFAYLNSE-M----RQFIDVTIFIDTPLDIAMARRILR--DFKEDTGNEIHNDLKHYLNYARPLYLEAL 147 (182)
T ss_pred CCceEEEEee-ehhhccHH-H----HHHcCEEEEEcCCHHHHHHHHHHH--HhhhccccchhhHHHHHHHHHHHHHHHHh
Confidence 1124455665 32211111 1 124789999999999999998888 2212223345566666766555543222
Q ss_pred Hh--cCcEEEEeCCCCceeEE
Q 029252 175 EA--KGKVRKVIFCSPIFILV 193 (196)
Q Consensus 175 ~~--~~~~~~id~~~~~e~v~ 193 (196)
.. ....++||++.+.+++.
T Consensus 148 ~~~~~~~~~vId~~~~~e~i~ 168 (182)
T PRK08233 148 HTVKPNADIVLDGALSVEEII 168 (182)
T ss_pred hcCccCCeEEEcCCCCHHHHH
Confidence 11 12467799888877653
No 40
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.68 E-value=2.5e-15 Score=107.62 Aligned_cols=160 Identities=14% Similarity=0.217 Sum_probs=84.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCC--CCCH------------H
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPS------------E 83 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------~ 83 (196)
+++|+|.|++||||||+++.|++.++. .++.... +.+.+.++.+...+..+. .... .
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~ 76 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE------PGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE 76 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999843 2221100 011222333333321111 1110 0
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccCCCH------------HHHHHHHhhcCC--CCcEEEEEEcCHHHHHHHHhhccCCCC
Q 029252 84 VTIKLLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQGRE 149 (196)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~iidg~~~~~------------~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~R~~~R~~~r~ 149 (196)
.....+...+. .+..+|+|.+.... +....+.. ... .|+++|||++|++++++|+..| ++.
T Consensus 77 ~~~~~i~~~l~--~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~-~~~~~~~d~~i~l~~~~~~~~~R~~~r--~~~ 151 (195)
T TIGR00041 77 HLEDKIKPALA--EGKLVISDRYVFSSIAYQGGARGIDEDLVLELNE-DALGDMPDLTIYLDIDPEVALERLRKR--GEL 151 (195)
T ss_pred HHHHHHHHHHh--CCCEEEECCcccHHHHHccccCCCCHHHHHHHHH-HhhCCCCCEEEEEeCCHHHHHHHHHhc--CCc
Confidence 11222333332 36778899643221 12222222 222 4899999999999999999988 332
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEEe
Q 029252 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVI 194 (196)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~ 194 (196)
+. +... ....+........+.+.....+++||++.++++|..
T Consensus 152 ~~--~~~~-~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~ 193 (195)
T TIGR00041 152 DR--EEFE-KLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQ 193 (195)
T ss_pred ch--HHHH-HHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHh
Confidence 11 1111 111111111112222222446899999999988753
No 41
>PRK08356 hypothetical protein; Provisional
Probab=99.68 E-value=9e-16 Score=109.86 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=76.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC-cc----hHHH------HHHHHcCCCCC----HHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS-EN----GTMI------QNMIKEGKIVP----SEVTI 86 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~-~~----~~~~------~~~~~~~~~~~----~~~~~ 86 (196)
++|+|+|+|||||||+|+.|+ ++++.+++.++.++....... .. ...+ ..++..+..++ .++..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~ 84 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILI 84 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHH
Confidence 679999999999999999996 589999998886544322211 00 0000 12222233222 13333
Q ss_pred HHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 87 ~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.++...+. ....+++||+ +..++...+.. . ...+||+++|++++.+|+..|
T Consensus 85 ~~~~~~~~--~~~~ividG~-r~~~q~~~l~~-~---~~~vi~l~~~~~~~~~Rl~~R 135 (195)
T PRK08356 85 RLAVDKKR--NCKNIAIDGV-RSRGEVEAIKR-M---GGKVIYVEAKPEIRFERLRRR 135 (195)
T ss_pred HHHHHHhc--cCCeEEEcCc-CCHHHHHHHHh-c---CCEEEEEECCHHHHHHHHHhc
Confidence 44444442 2346999999 88888888765 2 247999999999999999988
No 42
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.67 E-value=7.6e-15 Score=104.94 Aligned_cols=163 Identities=17% Similarity=0.274 Sum_probs=93.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCc---EecHHHHHHHHHHcCCcchHHHHHHHHcC-CCCCHHHH--------HH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSENGTMIQNMIKEG-KIVPSEVT--------IK 87 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~ 87 (196)
++++|++.|+.||||||+++.|++.+... ++-. + .+.+++.++.++..+.++ ........ .+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t----r--EP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~ 75 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT----R--EPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ 75 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE----e--CCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999988432 2221 1 144566777777776654 22222111 11
Q ss_pred HHHHHHHh--cCCCeEEEeccCCC------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccC--CCC
Q 029252 88 LLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQ--GRE 149 (196)
Q Consensus 88 ~~~~~l~~--~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~--~r~ 149 (196)
.+.+.+.. ..+..||.|.|..+ .+....+.+. ....||+++||++|++++.+|+.+|.. .+.
T Consensus 76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~ 155 (208)
T COG0125 76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRF 155 (208)
T ss_pred HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchh
Confidence 12222211 13778899975322 1222222221 334799999999999999999999921 111
Q ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+.....+.++ .+..+..+.+.+. ..+++||++.++++|.
T Consensus 156 E~~~~~f~~k---vr~~Y~~la~~~~--~r~~vIda~~~~e~v~ 194 (208)
T COG0125 156 EKEDDEFLEK---VREGYLELAAKFP--ERIIVIDASRPLEEVH 194 (208)
T ss_pred hhHHHHHHHH---HHHHHHHHHhhCC--CeEEEEECCCCHHHHH
Confidence 1111112222 2222223322221 1599999999988764
No 43
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.66 E-value=5.6e-15 Score=103.66 Aligned_cols=154 Identities=16% Similarity=0.204 Sum_probs=84.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
..|+|.|++||||||+++.|++++++.+++.|.+...... .... .++.. ..+..+...-...+.......+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g--~~~~----~~~~~---~g~~~~~~~e~~~~~~~~~~~~ 73 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN--MTVA----EIVER---EGWAGFRARESAALEAVTAPST 73 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC--CCHH----HHHHH---HCHHHHHHHHHHHHHHhcCCCe
Confidence 4688999999999999999999999999999888766531 1111 11111 0112222221222221122333
Q ss_pred EEe-c--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252 102 LID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (196)
Q Consensus 102 iid-g--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (196)
|+. | +.........+.. ..++|||++|++++.+|+..| ...|+........+.+...... ..+.|..
T Consensus 74 vi~~ggg~vl~~~~~~~l~~-----~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~---r~~~y~~ 145 (171)
T PRK03731 74 VIATGGGIILTEENRHFMRN-----NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAE---REALYRE 145 (171)
T ss_pred EEECCCCccCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHH---HHHHHHH
Confidence 444 3 2233333333333 557999999999999999877 1222211111111222222221 1223433
Q ss_pred cCcEEEEeCCCCceeEE
Q 029252 177 KGKVRKVIFCSPIFILV 193 (196)
Q Consensus 177 ~~~~~~id~~~~~e~v~ 193 (196)
.. .++||++.++++++
T Consensus 146 ~a-~~~Id~~~~~e~v~ 161 (171)
T PRK03731 146 VA-HHIIDATQPPSQVV 161 (171)
T ss_pred hC-CEEEcCCCCHHHHH
Confidence 22 36899998887654
No 44
>PRK13948 shikimate kinase; Provisional
Probab=99.66 E-value=3.1e-15 Score=105.23 Aligned_cols=112 Identities=15% Similarity=0.106 Sum_probs=73.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGN 98 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 98 (196)
++..|+|.|++||||||+++.|+++++..+++.|.++.+.... .+...+ ..|.....+.....+...+. ..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~------si~~if~~~Ge~~fR~~E~~~l~~l~~--~~ 80 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGK------SIPEIFRHLGEAYFRRCEAEVVRRLTR--LD 80 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhC------CHHHHHHHhCHHHHHHHHHHHHHHHHh--cC
Confidence 4578999999999999999999999999999999888776321 222222 22332333333444444433 23
Q ss_pred CeEEEe--ccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 99 DKFLID--GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 99 ~~~iid--g~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
..+|.- |.....+....+.+ ...+|||++|++++.+|+..+
T Consensus 81 ~~VIa~GgG~v~~~~n~~~l~~-----~g~vV~L~~~~e~l~~Rl~~~ 123 (182)
T PRK13948 81 YAVISLGGGTFMHEENRRKLLS-----RGPVVVLWASPETIYERTRPG 123 (182)
T ss_pred CeEEECCCcEEcCHHHHHHHHc-----CCeEEEEECCHHHHHHHhcCC
Confidence 334332 34445555555544 235899999999999999544
No 45
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.66 E-value=4.9e-15 Score=107.84 Aligned_cols=168 Identities=15% Similarity=0.224 Sum_probs=85.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-HH-HcCCcchH------HHHHHHHcCC---CCCHH----HHH-
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-EI-KSGSENGT------MIQNMIKEGK---IVPSE----VTI- 86 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~-~~-~~~~~~~~------~~~~~~~~~~---~~~~~----~~~- 86 (196)
+|+|.|+.||||||+++.|+++++..++........ .. +.+...++ .++.++.... ..... +..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 489999999999999999999998644422100000 00 00111111 1222322111 11111 111
Q ss_pred --HHHHHHHHh--cCCCeEEEeccCCCH-H--------------HHHHHHhh------cCCCCcEEEEEEcCHHHHHHHH
Q 029252 87 --KLLQKAMEE--SGNDKFLIDGFPRNE-E--------------NRAAFEAV------TKIEPEFVLFFDCSEEEMERRI 141 (196)
Q Consensus 87 --~~~~~~l~~--~~~~~~iidg~~~~~-~--------------~~~~~~~~------~~~~~~~~i~l~~~~~~~~~R~ 141 (196)
..+.+.+.. ..++.+|+|++..+- . ....+..+ ....||++|||++|++++.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 111111111 136788999863221 1 11111111 2367999999999999999999
Q ss_pred hhccCCCCCCcHHHHHHHHHHHHhcchhHH-HHHHhcCcEEEEeCC--CCceeEE
Q 029252 142 LNRNQGREDDNVETIRKRFKVFLESSLPVV-QYYEAKGKVRKVIFC--SPIFILV 193 (196)
Q Consensus 142 ~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~id~~--~~~e~v~ 193 (196)
..| ++..+. ..-...++..+..+.... ..|.....++.+|++ .++++++
T Consensus 161 ~~R--~~~~e~-~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~~e~i~ 212 (219)
T cd02030 161 KKR--GDPHEM-KVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVV 212 (219)
T ss_pred HHc--CCchhh-cccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhhHHHHH
Confidence 998 443221 111112222222222222 224445579999988 7777654
No 46
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.66 E-value=6.9e-15 Score=102.41 Aligned_cols=149 Identities=15% Similarity=0.193 Sum_probs=85.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----HHcCCcch-HHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 029252 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (196)
|+|.|++||||||+++.|++.++..+++.|++.... ...+.... .....+. ......+...+. .+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~--~~ 70 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWL--------QNLNDASTAAAA--KN 70 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHH--------HHHHHHHHHHHh--cC
Confidence 578999999999999999999999999988864221 11111110 0000000 011222222232 24
Q ss_pred CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcC
Q 029252 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178 (196)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (196)
..+|++...........+.. .. ....++||++|++++.+|+..| +....+.+.+..++..+.. +. ....
T Consensus 71 ~~~Vi~~t~~~~~~r~~~~~-~~-~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~---~~----~~e~ 139 (163)
T TIGR01313 71 KVGIITCSALKRHYRDILRE-AE-PNLHFIYLSGDKDVILERMKAR--KGHFMKADMLESQFAALEE---PL----ADET 139 (163)
T ss_pred CCEEEEecccHHHHHHHHHh-cC-CCEEEEEEeCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhCC---CC----CCCC
Confidence 44466654444444444443 22 2334799999999999999999 3322334555555444321 11 1123
Q ss_pred cEEEEeCCCCceeEE
Q 029252 179 KVRKVIFCSPIFILV 193 (196)
Q Consensus 179 ~~~~id~~~~~e~v~ 193 (196)
.+++||++.+++++.
T Consensus 140 ~~~~id~~~~~~~~~ 154 (163)
T TIGR01313 140 DVLRVDIDQPLEGVE 154 (163)
T ss_pred ceEEEECCCCHHHHH
Confidence 589999999987653
No 47
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.64 E-value=4.2e-15 Score=106.23 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=94.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHH-------------
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE------------- 83 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------- 83 (196)
.+|+|+|++||||||+++.|++ +|+.+++.|.+.+..+..+.+....+...+..+ ..+...
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5799999999999999999988 999999999999998776555444444333211 112211
Q ss_pred -----HHH----HHHHHHHHhcC-CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252 84 -----VTI----KLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (196)
Q Consensus 84 -----~~~----~~~~~~l~~~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~ 153 (196)
+.. ..+...+.... ...+++|. |...+. . ....+|.++++++|++++.+|+..| ...+.
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e~--~----~~~~~D~vi~V~a~~e~~~~Rl~~R----~~~s~ 150 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFEN--G----LEKLVDRVLVVDAPPETQLERLMAR----DGLSE 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhcC--C----chhhCCeEEEEECCHHHHHHHHHHc----CCCCH
Confidence 112 22222232222 24566774 221111 1 1224789999999999999999988 33556
Q ss_pred HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
+.+..|+.... +..+ ..... -++|+++.+++++
T Consensus 151 e~~~~ri~~Q~----~~~~-~~~~a-d~vI~N~g~~e~l 183 (194)
T PRK00081 151 EEAEAIIASQM----PREE-KLARA-DDVIDNNGDLEEL 183 (194)
T ss_pred HHHHHHHHHhC----CHHH-HHHhC-CEEEECCCCHHHH
Confidence 67777776543 2212 12222 3577877777654
No 48
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.64 E-value=9.5e-15 Score=104.30 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=95.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH------cCCCCCHH------------
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK------EGKIVPSE------------ 83 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------------ 83 (196)
++|+|+|++||||||+++.|++.+|+.+++.|++.+..+..+.+....+...+. .|..+...
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 469999999999999999999988999999999999988776655544444332 12011111
Q ss_pred ----------HHHHHHHHHHHhcC-CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc
Q 029252 84 ----------VTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (196)
Q Consensus 84 ----------~~~~~~~~~l~~~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~ 152 (196)
.....+...+.... ...+++|- |...+. . ....+|.++++++|.+++.+|+.+| ...+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~-pll~E~--~----~~~~~D~ii~V~a~~e~r~~Rl~~R----~g~s 150 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI-PLLFEA--K----LTDLCSEIWVVDCSPEQQLQRLIKR----DGLT 150 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe-HHhcCc--c----hHhCCCEEEEEECCHHHHHHHHHHc----CCCC
Confidence 11222233333222 34555663 222111 1 1224789999999999999999988 2445
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
.+....|+.... +. .......++ +|+++.+++++
T Consensus 151 ~e~~~~ri~~Q~----~~-~~k~~~aD~-vI~N~g~~e~l 184 (195)
T PRK14730 151 EEEAEARINAQW----PL-EEKVKLADV-VLDNSGDLEKL 184 (195)
T ss_pred HHHHHHHHHhCC----CH-HHHHhhCCE-EEECCCCHHHH
Confidence 667777765422 22 112233344 67777777653
No 49
>PRK13946 shikimate kinase; Provisional
Probab=99.63 E-value=1.1e-14 Score=103.27 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=73.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (196)
..+..|+|.|++||||||+++.|++++++.+++.|....... +......+.. .+...........+...+. .+
T Consensus 8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~--~~ 80 (184)
T PRK13946 8 LGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLK--GG 80 (184)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHh--cC
Confidence 356789999999999999999999999999999988766553 2222222111 1111112222344444432 24
Q ss_pred CeEEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 99 DKFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 99 ~~~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
..+|..| .+...+....+.. ..++|||++|++++.+|+..|
T Consensus 81 ~~Vi~~ggg~~~~~~~r~~l~~-----~~~~v~L~a~~e~~~~Rl~~r 123 (184)
T PRK13946 81 PLVLATGGGAFMNEETRAAIAE-----KGISVWLKADLDVLWERVSRR 123 (184)
T ss_pred CeEEECCCCCcCCHHHHHHHHc-----CCEEEEEECCHHHHHHHhcCC
Confidence 4555554 3344455554443 346899999999999999987
No 50
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.63 E-value=2.4e-14 Score=103.28 Aligned_cols=159 Identities=15% Similarity=0.189 Sum_probs=85.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHc--CCCCCHHHH---------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKE--GKIVPSEVT--------- 85 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------- 85 (196)
++++|+|.|++||||||+++.|++.++. .++.... ..+...++.+...+.. ....+....
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 75 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTRE------PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ 75 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeC------CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999998732 1111100 1122233444444431 111111111
Q ss_pred --HHHHHHHHHhcCCCeEEEeccCCCH------------HHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCC
Q 029252 86 --IKLLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE 149 (196)
Q Consensus 86 --~~~~~~~l~~~~~~~~iidg~~~~~------------~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~ 149 (196)
...+...+. .+..+|+|.+.... .....+... ....||++|||++|++++.+|+.+| +..
T Consensus 76 ~~~~~i~~~l~--~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R--~~~ 151 (205)
T PRK00698 76 HLEEVIKPALA--RGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRAR--GEL 151 (205)
T ss_pred HHHHHHHHHHH--CCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCc
Confidence 111222222 37789999643321 111122221 2366999999999999999999999 321
Q ss_pred CCc---HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 150 DDN---VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 150 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+.. ......++...+ ..+.+. ....+++||++.+++++.
T Consensus 152 ~~~~~~~~~~~~~~~~~y---~~~~~~--~~~~~~~Id~~~~~e~v~ 193 (205)
T PRK00698 152 DRIEQEGLDFFERVREGY---LELAEK--EPERIVVIDASQSLEEVH 193 (205)
T ss_pred chhhhhhHHHHHHHHHHH---HHHHHh--CCCeEEEEeCCCCHHHHH
Confidence 111 112222332211 122221 123688999999988764
No 51
>PRK00625 shikimate kinase; Provisional
Probab=99.63 E-value=2.9e-14 Score=99.63 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=69.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
.|+|+|+|||||||+++.|++++++.+++.|+++.+.....- .....+.+ ..|...........+.. +. ....+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~--~~~i~eif~~~Ge~~fr~~E~~~l~~-l~--~~~~V 76 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGAL--YSSPKEIYQAYGEEGFCREEFLALTS-LP--VIPSI 76 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCC--CCCHHHHHHHHCHHHHHHHHHHHHHH-hc--cCCeE
Confidence 599999999999999999999999999999999887643210 01122222 22222122222222322 22 13345
Q ss_pred EEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 102 iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
|..| .....+....+.. ...+|||++|.+++.+|+..|
T Consensus 77 Is~GGg~~~~~e~~~~l~~-----~~~Vv~L~~~~e~l~~Rl~~R 116 (173)
T PRK00625 77 VALGGGTLMIEPSYAHIRN-----RGLLVLLSLPIATIYQRLQKR 116 (173)
T ss_pred EECCCCccCCHHHHHHHhc-----CCEEEEEECCHHHHHHHHhcC
Confidence 5444 3333333333322 246999999999999999988
No 52
>PRK04182 cytidylate kinase; Provisional
Probab=99.63 E-value=2.9e-14 Score=100.77 Aligned_cols=110 Identities=22% Similarity=0.320 Sum_probs=70.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCC--HHHHHHHHHHHHHhcCCC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP--SEVTIKLLQKAMEESGND 99 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 99 (196)
++|+|.|++||||||+++.|++++++.+++.+++++............+... +...+ .......+..... .+.
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~ 75 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKY---AEEDPEIDKEIDRRQLEIAE--KED 75 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHH---hhcCchHHHHHHHHHHHHHh--cCC
Confidence 4799999999999999999999999999999888887654322111122111 11111 1111222222221 345
Q ss_pred eEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.+|++|..... + ....++++|||++|++++.+|+..|
T Consensus 76 ~~Vi~g~~~~~-----~---~~~~~~~~V~l~a~~e~~~~Rl~~r 112 (180)
T PRK04182 76 NVVLEGRLAGW-----M---AKDYADLKIWLKAPLEVRAERIAER 112 (180)
T ss_pred CEEEEEeecce-----E---ecCCCCEEEEEECCHHHHHHHHHhc
Confidence 67888742110 0 1112678999999999999999988
No 53
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.62 E-value=6.5e-14 Score=99.86 Aligned_cols=160 Identities=13% Similarity=0.176 Sum_probs=93.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcch----HH-HHHHHHcCCCCCHHH----------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG----TM-IQNMIKEGKIVPSEV---------- 84 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~---------- 84 (196)
.+.+|+|.|+|||||||+|+.|+++++..++..+|++++......... .. +..+-..+......+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 467999999999999999999999999988899999998877632211 00 000000011111111
Q ss_pred ----HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEc-CHHHHHHHHhhc-cCCCCCCcHHHHHH
Q 029252 85 ----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNR-NQGREDDNVETIRK 158 (196)
Q Consensus 85 ----~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R-~~~r~~~~~~~~~~ 158 (196)
+..++...+. ++..+|+|+.+........... . . ...+++.+ ++++..+|+..| .......+.+...+
T Consensus 82 v~~~L~~va~~~l~--~G~sVIvEgv~l~p~~~~~~~~-~--~-v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~ 155 (197)
T PRK12339 82 IMPGINRVIRRALL--NGEDLVIESLYFHPPMIDENRT-N--N-IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAE 155 (197)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEecCcCHHHHHHHHh-c--C-eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHH
Confidence 1233333444 5889999997777666543222 1 1 24555544 688888999999 22222333344444
Q ss_pred HHHHHHhcchhHHHHHHhcCcEEEEeCC
Q 029252 159 RFKVFLESSLPVVQYYEAKGKVRKVIFC 186 (196)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~ 186 (196)
.+...+....-+++.-++. .+-+|++.
T Consensus 156 ~~~~ir~i~~~l~~~a~~~-~i~~i~~~ 182 (197)
T PRK12339 156 HLPEYRTIMDYSIADARGY-NIKVIDTD 182 (197)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCeecCc
Confidence 4555554444444443333 34455543
No 54
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.62 E-value=3.2e-14 Score=102.11 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=83.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCC---CCCHHH-----------
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK---IVPSEV----------- 84 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------- 84 (196)
++|+|.|++||||||+++.|++.+ |..++.... ......++.+..++.... ..+...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 479999999999999999999988 443332211 001112233333332211 111100
Q ss_pred HHHHHHHHHHhcCCCeEEEeccCCCH------------HHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCC
Q 029252 85 TIKLLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRED 150 (196)
Q Consensus 85 ~~~~~~~~l~~~~~~~~iidg~~~~~------------~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~ 150 (196)
....+...+. .+..+|+|.++... +....+... ....|+++|||++|++++.+|+.+| ++..
T Consensus 75 ~~~~~~~~~~--~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~ 150 (200)
T cd01672 75 VEEVIKPALA--RGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEAR--GRDD 150 (200)
T ss_pred HHHHHHHHHh--CCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCcc
Confidence 0111222222 47788999644221 122222221 3357899999999999999999998 3322
Q ss_pred CcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.........++.....+..+...+ ...+++||++.+++++.
T Consensus 151 ~~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~id~~~~~e~i~ 191 (200)
T cd01672 151 RDEQEGLEFHERVREGYLELAAQE--PERIIVIDASQPLEEVL 191 (200)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCCHHHHH
Confidence 210111111111121122222222 23688999999887754
No 55
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.62 E-value=6.4e-14 Score=98.21 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=71.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
++|+|.|++||||||+|+.|++++++.+++.+++++............+.........+ .......+..... .+..+
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~ 77 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEI-DKKIDRRIHEIAL--KEKNV 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHH-HHHHHHHHHHHHh--cCCCE
Confidence 47999999999999999999999999999998888776443221111111111111111 1111222222221 35678
Q ss_pred EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
|++|..... + ....++++||+++|++++.+|+.+|
T Consensus 78 Vi~g~~~~~-----~---~~~~~d~~v~v~a~~~~r~~R~~~R 112 (171)
T TIGR02173 78 VLESRLAGW-----I---VREYADVKIWLKAPLEVRARRIAKR 112 (171)
T ss_pred EEEecccce-----e---ecCCcCEEEEEECCHHHHHHHHHHc
Confidence 889854211 0 1223678999999999999999988
No 56
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.62 E-value=6.7e-15 Score=100.10 Aligned_cols=144 Identities=18% Similarity=0.245 Sum_probs=86.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
+.|+|+|.||+||||+|++|+ .+|+.+++..++..+. .........- ....+..+.....+...+ .....
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~-~~~~~~de~r-----~s~~vD~d~~~~~le~~~---~~~~~ 70 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN-GLYTEYDELR-----KSVIVDVDKLRKRLEELL---REGSG 70 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc-CCeeccCCcc-----ceEEeeHHHHHHHHHHHh---ccCCe
Confidence 479999999999999999998 9999999998887764 1111100000 001112233344444433 25678
Q ss_pred EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHH--HHhcchhHHHHHHhcCc
Q 029252 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGK 179 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 179 (196)
|+|++... ....+|++|+|.++++.+.+|+.+| |-+ ++.+.+.++. +--......+.+ ..
T Consensus 71 Ivd~H~~h----------l~~~~dlVvVLR~~p~~L~~RLk~R--Gy~---~eKI~ENveAEi~~vi~~EA~E~~---~~ 132 (180)
T COG1936 71 IVDSHLSH----------LLPDCDLVVVLRADPEVLYERLKGR--GYS---EEKILENVEAEILDVILIEAVERF---EA 132 (180)
T ss_pred Eeechhhh----------cCCCCCEEEEEcCCHHHHHHHHHHc--CCC---HHHHHHHHHHHHHHHHHHHHHHhc---Cc
Confidence 89975421 2224899999999999999999999 544 2333332211 111111222333 45
Q ss_pred EEEEeCC-CCceeEE
Q 029252 180 VRKVIFC-SPIFILV 193 (196)
Q Consensus 180 ~~~id~~-~~~e~v~ 193 (196)
++.+|.+ .++++++
T Consensus 133 v~evdtt~~s~ee~~ 147 (180)
T COG1936 133 VIEVDTTNRSPEEVA 147 (180)
T ss_pred eEEEECCCCCHHHHH
Confidence 8888875 5666543
No 57
>PRK07261 topology modulation protein; Provisional
Probab=99.62 E-value=3.6e-15 Score=104.40 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
+.|+|.|+|||||||+|+.|++.++..+++.|++.... + + ...+.+.....+...+. +..|
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~---~--~-----------~~~~~~~~~~~~~~~~~---~~~w 61 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP---N--W-----------QERDDDDMIADISNFLL---KHDW 61 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc---c--c-----------ccCCHHHHHHHHHHHHh---CCCE
Confidence 35899999999999999999999999999887754321 0 0 11223334555555554 3449
Q ss_pred EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
|+||.+...-....+. ..|.++||++|..+|..|+.+|
T Consensus 62 Iidg~~~~~~~~~~l~-----~ad~vI~Ld~p~~~~~~R~lkR 99 (171)
T PRK07261 62 IIDGNYSWCLYEERMQ-----EADQIIFLNFSRFNCLYRAFKR 99 (171)
T ss_pred EEcCcchhhhHHHHHH-----HCCEEEEEcCCHHHHHHHHHHH
Confidence 9999876533333333 3789999999999999999998
No 58
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.61 E-value=6.1e-14 Score=96.33 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=78.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH----HcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S 96 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ 96 (196)
+|+|.|+|||||||+|+.|++.++..+++.|++..... ..+.+.... ................ .
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDE----------DRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCcc----------chhhHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999877665311 111111100 0011111111111111 1
Q ss_pred CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL 164 (196)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~ 164 (196)
.+..+|+|...........+..+.......+|||++|.+++.+|+..| .....+.+.+..+.+.++
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~ 136 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR--KGHFMPADLLDSQFETLE 136 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhc
Confidence 466788887555555555555522123446999999999999999999 222233455555554443
No 59
>PRK13947 shikimate kinase; Provisional
Probab=99.59 E-value=4.1e-14 Score=99.26 Aligned_cols=110 Identities=16% Similarity=0.272 Sum_probs=67.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 102 (196)
.|+|.|+|||||||+++.|++++++.+++.|.++.... +....+.+. ..+.....+.....+.. +.. ....+|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~---~~ge~~~~~~e~~~~~~-l~~-~~~~vi 75 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GMTVAEIFE---KDGEVRFRSEEKLLVKK-LAR-LKNLVI 75 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CCcHHHHHH---HhChHHHHHHHHHHHHH-Hhh-cCCeEE
Confidence 48999999999999999999999999999988776652 111111111 11211111222223332 221 233343
Q ss_pred Eec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 103 idg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
-.| ..........+.+ ...+|||+++++.+.+|+..|
T Consensus 76 ~~g~g~vl~~~~~~~l~~-----~~~vv~L~~~~~~l~~Rl~~r 114 (171)
T PRK13947 76 ATGGGVVLNPENVVQLRK-----NGVVICLKARPEVILRRVGKK 114 (171)
T ss_pred ECCCCCcCCHHHHHHHHh-----CCEEEEEECCHHHHHHHhcCC
Confidence 223 2344444444443 246999999999999999877
No 60
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.59 E-value=4.2e-14 Score=99.86 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=91.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCC-----CCCH---------------
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-----IVPS--------------- 82 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------------- 82 (196)
+|+|+|++||||||+++.|++ +|+.++++|++.++.+..+......+...+.... .+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999988 8999999999999987766555444444432211 1111
Q ss_pred ---HHHHHHH----HHHHHhcCC-CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHH
Q 029252 83 ---EVTIKLL----QKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (196)
Q Consensus 83 ---~~~~~~~----~~~l~~~~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~ 154 (196)
.+....+ .+.+..... ..+|+|. |...+.. ....+|.++++++|+++..+|+..| ...+.+
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~-plL~e~~------~~~~~D~vv~V~a~~~~ri~Rl~~R----d~~s~~ 148 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDI-PLLFETG------LEKLVDRVIVVDAPPEIQIERLMKR----DGLSEE 148 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEEe-hHhhcCC------cHHhCCeEEEEECCHHHHHHHHHHc----CCCCHH
Confidence 1112222 222222222 4566664 2222110 1124789999999999999999988 344567
Q ss_pred HHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCce
Q 029252 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIF 190 (196)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e 190 (196)
.+..|+...... ..+....+ ++|+++.+.+
T Consensus 149 ~~~~r~~~Q~~~-----~~~~~~aD-~vI~N~~~~~ 178 (179)
T cd02022 149 EAEARIASQMPL-----EEKRARAD-FVIDNSGSLE 178 (179)
T ss_pred HHHHHHHhcCCH-----HHHHHhCC-EEEECcCCCC
Confidence 777776553221 11233333 4666666554
No 61
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.59 E-value=1.2e-13 Score=98.75 Aligned_cols=156 Identities=16% Similarity=0.091 Sum_probs=92.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-----cCCCCC------------
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-----EGKIVP------------ 81 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------ 81 (196)
..|..|.|+|++||||||+++.|++.+|+.+++.|.+.+..+.. ......+...++ .|. +.
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~-idR~~L~~~vF~d~ 81 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQ-INRAMLRAIITESK 81 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCC-cCHHHHHHHHhCCH
Confidence 45678999999999999999999999999999999988887654 222122221111 111 11
Q ss_pred ----------HHHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252 82 ----------SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (196)
Q Consensus 82 ----------~~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~ 151 (196)
+..+...+.+.+...+...+++|. |...+.... ....+|.++++.+|.++..+|+.+| ...
T Consensus 82 ~~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei-pLL~E~~~~----~~~~~D~vi~V~a~~e~ri~Rl~~R----d~~ 152 (204)
T PRK14733 82 EAKKWLEDYLHPVINKEIKKQVKESDTVMTIVDI-PLLGPYNFR----HYDYLKKVIVIKADLETRIRRLMER----DGK 152 (204)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe-chhhhccCc----hhhhCCEEEEEECCHHHHHHHHHHc----CCC
Confidence 111122333333322234566663 322221000 0124788999999999999999988 344
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCC-Ccee
Q 029252 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCS-PIFI 191 (196)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~e~ 191 (196)
+++....|+.... +..+ ....++ ++|+++. ++++
T Consensus 153 s~~~a~~ri~~Q~----~~ee-k~~~aD-~VI~N~g~~~~~ 187 (204)
T PRK14733 153 NRQQAVAFINLQI----SDKE-REKIAD-FVIDNTELTDQE 187 (204)
T ss_pred CHHHHHHHHHhCC----CHHH-HHHhCC-EEEECcCCCHHH
Confidence 5666676664433 2211 123333 3677776 6554
No 62
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.59 E-value=8e-14 Score=99.71 Aligned_cols=159 Identities=19% Similarity=0.272 Sum_probs=78.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCH----HHHHH---HHHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS----EVTIK---LLQKAMEE 95 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~l~~ 95 (196)
+|+|.|++||||||+++.|++++++.++.-.. ......+..+...+........ .+... .+.+....
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~------~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPV------EPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccc------cccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999999988764332110 0000001111111111000000 01111 11111110
Q ss_pred -cCCCeEEEeccCCCHH---------------HHH----HHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252 96 -SGNDKFLIDGFPRNEE---------------NRA----AFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (196)
Q Consensus 96 -~~~~~~iidg~~~~~~---------------~~~----~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~ 153 (196)
..+..+|+|.++.+.- ... .+..+ ....|+++|||+++++++.+|+.+| ++..+..
T Consensus 75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R--~r~~e~~ 152 (193)
T cd01673 75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKR--GRPEEQG 152 (193)
T ss_pred cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhc--CcHhhhc
Confidence 1378899998654311 011 11111 2467999999999999999999998 4432210
Q ss_pred HHHHHHHHHHHhcchhHHHH-HHhcCcEEEEeCCC-Cce
Q 029252 154 ETIRKRFKVFLESSLPVVQY-YEAKGKVRKVIFCS-PIF 190 (196)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~id~~~-~~e 190 (196)
...+.++..+..+...... +....++++||++. +.+
T Consensus 153 -~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~~~~~ 190 (193)
T cd01673 153 -IPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDANEADIE 190 (193)
T ss_pred -CCHHHHHHHHHHHHHHHhhccCCCCCEEEEECCccccc
Confidence 0011122222222222221 11234799999976 443
No 63
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.59 E-value=6.3e-14 Score=98.53 Aligned_cols=113 Identities=24% Similarity=0.359 Sum_probs=69.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
+++.|+|.|+|||||||+++.|++++++.+++.|+++..... ......+. ..+...........+...+. ...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g--~~~~~~~~---~~g~~~~~~~~~~~~~~l~~--~~~ 75 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG--KSIPEIFE---EEGEAAFRELEEEVLAELLA--RHN 75 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCHHHHHH---HHCHHHHHHHHHHHHHHHHh--cCC
Confidence 457899999999999999999999999999999888766422 12211111 11111111222333333333 233
Q ss_pred eEEEecc--CCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 100 KFLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 100 ~~iidg~--~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.+|..|. .........+.. ...+|||++|.+.+.+|+..|
T Consensus 76 ~vi~~g~~~~~~~~~r~~l~~-----~~~~v~l~~~~~~~~~R~~~~ 117 (175)
T PRK00131 76 LVISTGGGAVLREENRALLRE-----RGTVVYLDASFEELLRRLRRD 117 (175)
T ss_pred CEEEeCCCEeecHHHHHHHHh-----CCEEEEEECCHHHHHHHhcCC
Confidence 4444442 122222333322 347999999999999999877
No 64
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.58 E-value=1.5e-14 Score=103.71 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=94.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCH-----H-------------
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-----E------------- 83 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------------- 83 (196)
.+|.|+|++||||||+++.|++ +|+.+++.|++.++.+..+.+....+...+..+...++ .
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 3699999999999999999986 79999999999999888776655555555433222110 0
Q ss_pred ---------HHHHHHHHHHHhc--CC-CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252 84 ---------VTIKLLQKAMEES--GN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (196)
Q Consensus 84 ---------~~~~~~~~~l~~~--~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~ 151 (196)
.....+...+... .+ ..++++ .|...+. . ....+|.+||+++|++++.+|+.+| ...
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e-~plL~e~-----g-~~~~~D~vi~V~a~~e~ri~Rl~~R----~g~ 149 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYD-MPLLVEK-----G-LDRKMDLVVVVDVDVEERVRRLVEK----RGL 149 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEE-eeceeEc-----C-ccccCCeEEEEECCHHHHHHHHHHc----CCC
Confidence 1112222222111 12 334444 2221111 0 1225789999999999999999988 234
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
+.+....|+...... ... .... -++|+++.+++++
T Consensus 150 s~e~~~~ri~~Q~~~----~~k-~~~a-d~vI~N~g~~e~l 184 (200)
T PRK14734 150 DEDDARRRIAAQIPD----DVR-LKAA-DIVVDNNGTREQL 184 (200)
T ss_pred CHHHHHHHHHhcCCH----HHH-HHhC-CEEEECcCCHHHH
Confidence 567777777665532 111 2223 3478888777654
No 65
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.58 E-value=4.7e-14 Score=100.30 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=82.8
Q ss_pred EEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHH------------HHHHHHH
Q 029252 26 VLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE------------VTIKLLQ 90 (196)
Q Consensus 26 i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 90 (196)
|.|+.||||||+++.|++++. ..++.... ..+.+.+..+.+++......... .....+.
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~------~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~ 74 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFP------PGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIR 74 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEES------STSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999884 22111000 11223333344443311211111 0122333
Q ss_pred HHHHhcCCCeEEEeccCC------------CHHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHhhccCCC-CCCcHHHH
Q 029252 91 KAMEESGNDKFLIDGFPR------------NEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGR-EDDNVETI 156 (196)
Q Consensus 91 ~~l~~~~~~~~iidg~~~------------~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~r-~~~~~~~~ 156 (196)
..+. .+..+|+|.|.. ..+....+... ....||++|||++|++++.+|+..| +. .....+ -
T Consensus 75 ~~l~--~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r--~~~~~~~~~-~ 149 (186)
T PF02223_consen 75 PALK--RGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKR--GEKDDEEEE-D 149 (186)
T ss_dssp HHHH--TTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHT--SSTTTTTTH-H
T ss_pred HHHc--CCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcC--CccchHHHH-H
Confidence 3343 478999996421 12222222221 2228999999999999999999999 33 112211 1
Q ss_pred HHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 157 RKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
...+...+..+..+.+ ....+++||++.++|+|.
T Consensus 150 ~~~~~~~~~~y~~l~~---~~~~~~iid~~~~~e~v~ 183 (186)
T PF02223_consen 150 LEYLRRVREAYLELAK---DPNNWVIIDASRSIEEVH 183 (186)
T ss_dssp HHHHHHHHHHHHHHHH---TTTTEEEEETTS-HHHHH
T ss_pred HHHHHHHHHHHHHHHc---CCCCEEEEECCCCHHHHH
Confidence 2222233332223322 355799999999998764
No 66
>PRK06547 hypothetical protein; Provisional
Probab=99.58 E-value=5.6e-15 Score=103.20 Aligned_cols=126 Identities=16% Similarity=0.201 Sum_probs=74.4
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHH-HHHcCCCCC--HHHHHHHHHHH
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQN-MIKEGKIVP--SEVTIKLLQKA 92 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~ 92 (196)
.....+.+|+|.|+|||||||+++.|++.++..+++.|+++..... -....+.+.. .+..+.... .+.........
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~ 88 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRPGDW 88 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCCCCc
Confidence 4456778999999999999999999999999999999887653211 0111111222 222222111 00000000000
Q ss_pred HHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 93 l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
........+|++|..........+. ......+.|||++|.+++.+|+..|
T Consensus 89 ~~l~~~~vVIvEG~~al~~~~r~~~--d~~g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 89 VSVEPGRRLIIEGVGSLTAANVALA--SLLGEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred EEeCCCCeEEEEehhhccHHHHHHh--ccCCCEEEEEEECCHHHHHHHHHhc
Confidence 1111356788999654333222221 1223347999999999999999999
No 67
>PRK07933 thymidylate kinase; Validated
Probab=99.58 E-value=3.3e-14 Score=102.92 Aligned_cols=164 Identities=13% Similarity=0.068 Sum_probs=83.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCC---cEec----------HHHHHHHHHHcCC-c--chHHHHHHHHcCCCCCHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGY---THLS----------AGDLLRAEIKSGS-E--NGTMIQNMIKEGKIVPSEVT 85 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~----------~~d~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~ 85 (196)
++|+|.|+.||||||+++.|++.+.. .+.. .++.++..+.... . ........+-..... . .
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~--~-~ 77 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRA--G-A 77 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhh--h-h
Confidence 47999999999999999999998842 2221 1233333332210 0 000001111000000 0 0
Q ss_pred HHHHHHHHHhcCCCeEEEeccCCCHH--------------HHHHHHhh-----cCCCCcEEEEEEcCHHHHHHHHhhccC
Q 029252 86 IKLLQKAMEESGNDKFLIDGFPRNEE--------------NRAAFEAV-----TKIEPEFVLFFDCSEEEMERRILNRNQ 146 (196)
Q Consensus 86 ~~~~~~~l~~~~~~~~iidg~~~~~~--------------~~~~~~~~-----~~~~~~~~i~l~~~~~~~~~R~~~R~~ 146 (196)
...+..++. .+..+|.|+|..+-- ....+..+ ....||++|||++|++++.+|+.+|
T Consensus 78 ~~~I~p~l~--~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R-- 153 (213)
T PRK07933 78 RDELAGLLA--AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRR-- 153 (213)
T ss_pred HHHHHHHHh--CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhh--
Confidence 122333333 477889997543210 11111111 2246999999999999999999988
Q ss_pred CCCC-----CcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 147 GRED-----DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 147 ~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
++.. +..+.-...++..+..+..+.+.+ ....+++||++.++++|.
T Consensus 154 ~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~-~~~~~~~ida~~~~e~v~ 204 (213)
T PRK07933 154 AAQDADRARDAYERDDGLQQRTGAVYAELAAQG-WGGPWLVVDPDVDPAALA 204 (213)
T ss_pred ccccCCcccccccccHHHHHHHHHHHHHHHHhc-CCCCeEEeCCCCCHHHHH
Confidence 3210 101110111111222122222211 123688999999988764
No 68
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.58 E-value=4.1e-14 Score=97.63 Aligned_cols=148 Identities=17% Similarity=0.202 Sum_probs=97.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCc--------chHHHHHHHHcCCCCCHHHH------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSE--------NGTMIQNMIKEGKIVPSEVT------ 85 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~------ 85 (196)
++.+++|.||||+||||+++.|.++. -..++.+...|.. +.++. ..+.+..++..+.++.+..+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p-R~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP-RPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCC-CCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 57899999999999999999999988 5566665666654 22222 23677778887777655322
Q ss_pred --HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC-HHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252 86 --IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKV 162 (196)
Q Consensus 86 --~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (196)
...++..+. .+..+|+| -..+....+.. ..+ ..+.||+.+| .+++.+|+..| ..++.+.+..||..
T Consensus 81 T~~~~ve~~~~--~G~~vild---Id~qGa~qvk~-~~p-~~v~IFi~pPs~eeL~~RL~~R----gtds~e~I~~Rl~~ 149 (191)
T COG0194 81 TSREPVEQALA--EGKDVILD---IDVQGALQVKK-KMP-NAVSIFILPPSLEELERRLKGR----GTDSEEVIARRLEN 149 (191)
T ss_pred CcHHHHHHHHh--cCCeEEEE---EehHHHHHHHH-hCC-CeEEEEEcCCCHHHHHHHHHcc----CCCCHHHHHHHHHH
Confidence 455666665 47778877 22233343443 333 3446666555 58888888855 77888999999988
Q ss_pred HHhcchhHHHHHHhcCcEEEEeC
Q 029252 163 FLESSLPVVQYYEAKGKVRKVIF 185 (196)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~id~ 185 (196)
........ . ..+.+++|-
T Consensus 150 a~~Ei~~~----~-~fdyvivNd 167 (191)
T COG0194 150 AKKEISHA----D-EFDYVIVND 167 (191)
T ss_pred HHHHHHHH----H-hCCEEEECc
Confidence 87644332 2 234555553
No 69
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.58 E-value=1.5e-14 Score=98.95 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=81.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 102 (196)
+|+|.|+|||||||+|+.|+++++.++++.+.+....+.. ....... ...-.......+.. +. ....||
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~------~~~~~~~--~~~i~~~l~~~~~~-~~--~~~~~V 69 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK------LASEVAA--IPEVRKALDERQRE-LA--KKPGIV 69 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH------HHHHhcc--cHhHHHHHHHHHHH-Hh--hCCCEE
Confidence 4899999999999999999999999999987433322111 0000000 00001111222222 21 255699
Q ss_pred EeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHh-cchhHHHHHHhcCcE
Q 029252 103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLE-SSLPVVQYYEAKGKV 180 (196)
Q Consensus 103 idg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 180 (196)
+||...... .....+++|||++|++.+.+|+.+| ..++...+.+...+++..... ........|.....-
T Consensus 70 idg~~~~~~--------~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d 141 (147)
T cd02020 70 LEGRDIGTV--------VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDA 141 (147)
T ss_pred EEeeeeeeE--------EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCc
Confidence 998642110 1124678999999999999999997 333444556666665544432 122333444323333
Q ss_pred EEEeC
Q 029252 181 RKVIF 185 (196)
Q Consensus 181 ~~id~ 185 (196)
++||+
T Consensus 142 l~i~~ 146 (147)
T cd02020 142 IVIDT 146 (147)
T ss_pred EEEeC
Confidence 45554
No 70
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.56 E-value=7.1e-14 Score=98.27 Aligned_cols=30 Identities=30% Similarity=0.581 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.++|+|.|+.|+||||+|+.|+++++..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 478999999999999999999999985443
No 71
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.56 E-value=6.1e-13 Score=91.64 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=64.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 029252 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI 103 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii 103 (196)
|+|+|+|||||||+++.|++.+++.+++.|+++...... .....+... +...........+.. +.. ....+|.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~~---~~~~~~~~e~~~~~~-~~~-~~~~vi~ 74 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAEE---GEEGFRELEREVLLL-LLT-KENAVIA 74 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHHH---CHHHHHHHHHHHHHH-Hhc-cCCcEEE
Confidence 789999999999999999999999999999887765322 111111111 110000111112222 221 2343443
Q ss_pred eccC--CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 104 DGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 104 dg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.|.. ........+. ...++|||++|++++.+|+..|
T Consensus 75 ~g~~~i~~~~~~~~~~-----~~~~~i~l~~~~e~~~~R~~~r 112 (154)
T cd00464 75 TGGGAVLREENRRLLL-----ENGIVVWLDASPEELLERLARD 112 (154)
T ss_pred CCCCccCcHHHHHHHH-----cCCeEEEEeCCHHHHHHHhccC
Confidence 3321 2222212222 2457999999999999999887
No 72
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.56 E-value=6.1e-15 Score=97.62 Aligned_cols=106 Identities=31% Similarity=0.494 Sum_probs=61.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc----CC
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES----GN 98 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~ 98 (196)
+|+|.|+|||||||+|+.|++++++.++++|++++...-. +. ..+.........+.+...+... ..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI--ER--------DDDEREYIDADIDLLDDILEQLQNKPDN 70 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC--HG--------CTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc--cc--------CcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence 5899999999999999999999999999999953211000 00 0001000122233333333322 47
Q ss_pred CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
..||+||... ... .. .....+.++|+..+.+++.+|+.+|
T Consensus 71 ~~~ii~g~~~-~~~-~~----~~~~~~~~i~l~~~~~~~~~~~~~R 110 (121)
T PF13207_consen 71 DNWIIDGSYE-SEM-EI----RLPEFDHVIYLDAPDEECRERRLKR 110 (121)
T ss_dssp -EEEEECCSC-HCC-HS----CCHHGGCEEEEEEEEHHHHHHHHHH
T ss_pred CeEEEeCCCc-cch-hh----hhhcCCEEEEEECCCHHHHHHHHHH
Confidence 7899999433 211 10 1112357999999988666666555
No 73
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.56 E-value=1.1e-13 Score=98.46 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=93.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-----cCCCCC----------------
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-----EGKIVP---------------- 81 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---------------- 81 (196)
+|+|+|.+||||||+++.|++..++.+++.|++.+..+..+......+...+. ....+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 48999999999999999999887799999999999887776543332322221 111111
Q ss_pred ------HHHHHHHHHHHHHhcC--CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252 82 ------SEVTIKLLQKAMEESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (196)
Q Consensus 82 ------~~~~~~~~~~~l~~~~--~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~ 153 (196)
+......+...+.+.. +..+|++. |...+. . ....+|.++++++|.+++.+|+..| ...+.
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~-pll~e~--~----~~~~~D~vv~V~~~~~~~~~Rl~~R----~~~s~ 149 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDV-PLLFEN--K----LRSLCDRVIVVDVSPQLQLERLMQR----DNLTE 149 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc-hHhhhC--C----cHHhCCEEEEEECCHHHHHHHHHHc----CCCCH
Confidence 1111233333333222 23555653 322211 1 1224788999999999999999988 35556
Q ss_pred HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
+.+..|+.... +... ..... -++|+++.+++++
T Consensus 150 ~~~~~r~~~q~----~~~~-~~~~a-d~vI~N~~~~e~l 182 (188)
T TIGR00152 150 EEVQKRLASQM----DIEE-RLARA-DDVIDNSATLADL 182 (188)
T ss_pred HHHHHHHHhcC----CHHH-HHHhC-CEEEECCCCHHHH
Confidence 77777776653 2211 12223 3467777777654
No 74
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.55 E-value=1.3e-13 Score=97.92 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=87.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----HHc-CCcchHHHHHHHHcCCCCCHH--------HHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKS-GSENGTMIQNMIKEGKIVPSE--------VTIK 87 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~ 87 (196)
+.+++|.||+||||||+++.|+..++..++..+..+... ... -.-..+.+...+..+.+.... +..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~- 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI- 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH-
Confidence 468999999999999999999988765443322221111 000 111223333333333221110 002
Q ss_pred HHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcc
Q 029252 88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESS 167 (196)
Q Consensus 88 ~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~ 167 (196)
.+...+. .+..+|++|.-. ....+.+ .......+|||++|.+++.+|+..| ++. +.+.+..|+....
T Consensus 81 ~~~~~l~--~g~~VI~~G~~~---~~~~~~~-~~~~~~~vi~l~~s~e~l~~RL~~R--~~~--~~~~i~~rl~r~~--- 147 (186)
T PRK10078 81 EIDLWLH--AGFDVLVNGSRA---HLPQARA-RYQSALLPVCLQVSPEILRQRLENR--GRE--NASEINARLARAA--- 147 (186)
T ss_pred HHHHHHh--CCCEEEEeChHH---HHHHHHH-HcCCCEEEEEEeCCHHHHHHHHHHh--CCC--CHHHHHHHHHHhh---
Confidence 2444554 367788887521 1122222 2334456899999999999999988 433 4456777774321
Q ss_pred hhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 168 LPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 168 ~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.|. ....+++|++.++++++
T Consensus 148 -----~~~-~ad~~vi~~~~s~ee~~ 167 (186)
T PRK10078 148 -----RYQ-PQDCHTLNNDGSLRQSV 167 (186)
T ss_pred -----hhc-cCCEEEEeCCCCHHHHH
Confidence 222 34567888887877654
No 75
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.55 E-value=2.1e-13 Score=95.56 Aligned_cols=111 Identities=16% Similarity=0.286 Sum_probs=67.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (196)
+..|+|.|++||||||+++.|++.+++.+++.|........ ......+. ..|...........+..... ...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~i~~~~~---~~g~~~fr~~e~~~l~~l~~---~~~ 75 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADIGWVFD---VEGEEGFRDREEKVINELTE---KQG 75 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cCHhHHHH---HhCHHHHHHHHHHHHHHHHh---CCC
Confidence 45799999999999999999999999999999876655422 11111111 11111111122333333222 223
Q ss_pred EEEe-c--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 101 FLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 101 ~iid-g--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
+++. | ..........+.. ...+|||++|.+++.+|+..+
T Consensus 76 ~vi~~ggg~v~~~~~~~~l~~-----~~~vv~L~~~~e~~~~Ri~~~ 117 (172)
T PRK05057 76 IVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRD 117 (172)
T ss_pred EEEEcCCchhCCHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCC
Confidence 4443 2 2233344444444 357999999999999999765
No 76
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.54 E-value=7.2e-14 Score=103.77 Aligned_cols=145 Identities=18% Similarity=0.285 Sum_probs=83.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
+|+|+|+|||||||+|+.|++.++ ..+++. |.++..+.. +........ .......+...+. .
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~---~~~~~e~~~-------~~~~~~~i~~~l~--~ 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPV---WKEKYEEFI-------RDSTLYLIKTALK--N 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHH---hhHHhHHHH-------HHHHHHHHHHHHh--C
Confidence 589999999999999999999873 334444 445544321 111111111 1222445555554 3
Q ss_pred CCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252 98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (196)
+..+|+|+.......+..+... ....+..+||+++|.+++.+|...| +.. .+.+.+...+..|.. +.. .|.
T Consensus 68 ~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R--~~~-~~~~~i~~l~~r~e~---p~~-~~~ 140 (249)
T TIGR03574 68 KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER--GEK-IPNEVIKDMYEKFDE---PGT-KYS 140 (249)
T ss_pred CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC--CCC-CCHHHHHHHHHhhCC---CCC-CCC
Confidence 5679999865444443333321 2334567999999999999999988 432 234445554444431 111 121
Q ss_pred hcCcEEEEeCCC
Q 029252 176 AKGKVRKVIFCS 187 (196)
Q Consensus 176 ~~~~~~~id~~~ 187 (196)
-....+.||++.
T Consensus 141 wd~~~~~vd~~~ 152 (249)
T TIGR03574 141 WDLPDLTIDTTK 152 (249)
T ss_pred ccCceEEecCCC
Confidence 123577888875
No 77
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.54 E-value=1.6e-13 Score=96.48 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHH-------------
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE------------- 83 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------- 83 (196)
++|.|+|+.||||||+++.|++ +|+.++++|.+.+..+..+.+....+.+.+... ..+...
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4799999999999999999977 999999999999988776665444444433211 111111
Q ss_pred -----HH----HHHHHHHHHhcCC-CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252 84 -----VT----IKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (196)
Q Consensus 84 -----~~----~~~~~~~l~~~~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~ 153 (196)
+. ...+...+..... ..+++|. |...+. . ....+|.++++.+|.++..+|+.+| ...+.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~-pLL~E~--~----~~~~~D~vi~V~a~~e~ri~Rl~~R----~~~~~ 148 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEI-PLLFES--G----LEKLCDEVIVVYAPEEIRIKRLMER----DGLSE 148 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--T----GGGGSSEEEEEE--HHHHHHHHHHH----HTSTH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEc-chhhhh--h----HhhhhceEEEEECCHHHHHHHHHhh----CCCcH
Confidence 11 2223333332223 5666763 332222 1 2234889999999999999999998 35566
Q ss_pred HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCcee
Q 029252 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFI 191 (196)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~ 191 (196)
+.+..++.... +..++ ....+ ++|+++.++++
T Consensus 149 ~~~~~ri~~Q~----~~~~k-~~~ad-~vI~N~g~~~~ 180 (180)
T PF01121_consen 149 EEAEARIASQM----PDEEK-RKRAD-FVIDNNGSLEE 180 (180)
T ss_dssp HHHHHHHHTS------HHHH-HHH-S-EEEE-SSHHH-
T ss_pred HHHHHHHHhCC----CHHHH-HHhCC-EEEECCCCCCC
Confidence 66666654433 22222 22233 37777776653
No 78
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.54 E-value=6.2e-14 Score=92.85 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=77.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (196)
.+.|+|+|.||+||||+|.+||+.+++.++.++|++++..- ...+.+.. + -..+..+...+.+...+. ..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l-~~gyDE~y----~-c~i~DEdkv~D~Le~~m~---~Gg 77 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL-YEGYDEEY----K-CHILDEDKVLDELEPLMI---EGG 77 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc-hhcccccc----c-CccccHHHHHHHHHHHHh---cCC
Confidence 46699999999999999999999999999999999987511 11111111 1 123455777888888887 466
Q ss_pred EEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.|+|=+.... | ..-.+|++|+|.+|-+++..|+..|
T Consensus 78 ~IVDyHgCd~-----F---perwfdlVvVLr~~~s~LY~RL~sR 113 (176)
T KOG3347|consen 78 NIVDYHGCDF-----F---PERWFDLVVVLRTPNSVLYDRLKSR 113 (176)
T ss_pred cEEeecccCc-----c---chhheeEEEEEecCchHHHHHHHHc
Confidence 7888432211 1 1123678999999999999999999
No 79
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.54 E-value=2.5e-13 Score=98.05 Aligned_cols=155 Identities=20% Similarity=0.263 Sum_probs=92.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-----c---CC-CCCHH-------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-----E---GK-IVPSE------- 83 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~---~~-~~~~~------- 83 (196)
.+.+|.|+|++||||||+++.|++ +|+.+++.|.+.+.....+......+...+. . +. .+...
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 357899999999999999999975 8999999998887765543322122221110 0 11 01111
Q ss_pred ---------------HHHHHHHHHHHhc--CC-CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc
Q 029252 84 ---------------VTIKLLQKAMEES--GN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (196)
Q Consensus 84 ---------------~~~~~~~~~l~~~--~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 145 (196)
.+...+...+... .+ ..+++|. |...+. . ....+|.++++.+|.+++.+|+..|
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~-pLL~e~-~-----~~~~~d~ii~V~a~~e~~~~Rl~~R- 154 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEA-AILFES-G-----GDAGLDFIVVVAADTELRLERAVQR- 154 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEe-eeeeec-C-----chhcCCeEEEEECCHHHHHHHHHHc-
Confidence 1122222222221 12 3455553 322221 0 1234789999999999999999998
Q ss_pred CCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 146 QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 146 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
++ .+.+.+..|+.......... ... -++|+++.+++++
T Consensus 155 -~~--~s~e~~~~Ri~~q~~~~~~~-----~~a-d~vI~N~g~~e~l 192 (208)
T PRK14731 155 -GM--GSREEIRRRIAAQWPQEKLI-----ERA-DYVIYNNGTLDEL 192 (208)
T ss_pred -CC--CCHHHHHHHHHHcCChHHHH-----HhC-CEEEECCCCHHHH
Confidence 33 36788888887654432222 223 3467778877764
No 80
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.54 E-value=8.2e-14 Score=99.13 Aligned_cols=147 Identities=20% Similarity=0.277 Sum_probs=82.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCc------------c-hHHHHH---HHHcCCC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSE------------N-GTMIQN---MIKEGKI 79 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~------------~-~~~~~~---~~~~~~~ 79 (196)
.++.+|.|.|+|||||||+|+.|++.++. ..++.|+++...-..... + .+.+.+ .+..|..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 34589999999999999999999999984 477777777643211000 0 011111 1122222
Q ss_pred CCHHHH----HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHH
Q 029252 80 VPSEVT----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVE 154 (196)
Q Consensus 80 ~~~~~~----~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~ 154 (196)
+....+ ...........+...+|+||+....+ +.+.+ ..|+.||+++|.+++..|...| ...|-...+.
T Consensus 86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~----~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~ 159 (218)
T COG0572 86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD----LMDLKIFVDTDADVRLIRRIKRDVQERGRDLES 159 (218)
T ss_pred ccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh----hcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHH
Confidence 211111 00000111111366789999765544 22222 4678999999999999999998 3333333333
Q ss_pred HHHHHHHHHHhcchhHHHHHH
Q 029252 155 TIRKRFKVFLESSLPVVQYYE 175 (196)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ 175 (196)
.+. +|....+|....|.
T Consensus 160 vi~----qy~~~vkp~~~~fI 176 (218)
T COG0572 160 VIE----QYVKTVRPMYEQFI 176 (218)
T ss_pred HHH----HHHHhhChhhhhcc
Confidence 333 44444445554444
No 81
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.53 E-value=6.5e-13 Score=94.63 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=87.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCC-----C----------CH--
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----V----------PS-- 82 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~-- 82 (196)
+.++|.|+|.+||||||+++.+++ +|++++++|++.++.+.++.+....+....+.... + .+
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 357899999999999999999988 99999999999998877664433333222221110 0 00
Q ss_pred ------HHHHHHHHHHH---Hhc-CCCeEEEeccCCCHHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252 83 ------EVTIKLLQKAM---EES-GNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (196)
Q Consensus 83 ------~~~~~~~~~~l---~~~-~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~ 151 (196)
.+...++...+ .+. ....+++| . ..|.+. ....++.++++.+|+++..+|+.+| + ..
T Consensus 80 ~~~~Le~i~hPli~~~~~~~~~~~~~~~~~~e-i-------plL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R--~--~~ 147 (201)
T COG0237 80 ARLKLEKILHPLIRAEIKVVIDGARSPYVVLE-I-------PLLFEAGGEKYFDKVIVVYAPPEIRLERLMKR--D--GL 147 (201)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhCCceEEE-c-------hHHHhccccccCCEEEEEECCHHHHHHHHHhc--C--CC
Confidence 01122222211 111 12233343 2 233331 1122789999999999999999999 3 45
Q ss_pred cHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCcee
Q 029252 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFI 191 (196)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~ 191 (196)
+.+....++.... +..+.+.. + -++++++.+++.
T Consensus 148 ~~e~~~~~~~~Q~----~~~ek~~~-a-d~vi~n~~~i~~ 181 (201)
T COG0237 148 DEEDAEARLASQR----DLEEKLAL-A-DVVIDNDGSIEN 181 (201)
T ss_pred CHHHHHHHHHhcC----CHHHHHhh-c-CChhhcCCCHHH
Confidence 5555555543333 22222222 2 235666665543
No 82
>PLN02422 dephospho-CoA kinase
Probab=99.53 E-value=7.9e-13 Score=96.10 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=92.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHc-----CCCCCHH--------------
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSE-------------- 83 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-------------- 83 (196)
+|+|+|++||||||+++.|+ ++|+.+++.|++.++.+..+......+...++. ...+...
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~ 81 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ 81 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 69999999999999999998 689999999999999888765433333322211 1111111
Q ss_pred ----HHHHHHHH----HHHh---cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc
Q 029252 84 ----VTIKLLQK----AMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (196)
Q Consensus 84 ----~~~~~~~~----~l~~---~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~ 152 (196)
+....+.. .+.+ .....+++| .|...+. . ....+|.++++++|++++.+|+..| ...+
T Consensus 82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E~--~----~~~~~D~vI~V~a~~e~ri~RL~~R----~g~s 150 (232)
T PLN02422 82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFET--K----MDKWTKPVVVVWVDPETQLERLMAR----DGLS 150 (232)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhhc--c----hhhhCCEEEEEECCHHHHHHHHHHc----CCCC
Confidence 11222211 1111 113456666 3322221 0 2234789999999999999999988 3456
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
.+....|+..... ... .....+ ++|+++.+.+++
T Consensus 151 ~eea~~Ri~~Q~~----~ee-k~~~AD-~VI~N~gs~e~L 184 (232)
T PLN02422 151 EEQARNRINAQMP----LDW-KRSKAD-IVIDNSGSLEDL 184 (232)
T ss_pred HHHHHHHHHHcCC----hhH-HHhhCC-EEEECCCCHHHH
Confidence 6777777644332 211 123333 477777777654
No 83
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.52 E-value=6.3e-13 Score=93.60 Aligned_cols=118 Identities=12% Similarity=0.155 Sum_probs=70.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHHHcCCcchHHHHHHHHcC--CCCCH-------HHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEG--KIVPS-------EVTIKLL 89 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~ 89 (196)
+.+|+|.|+|||||||+++.|++.++. .+++.|++........... . ...-..+ ...+. ......+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 78 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDA-E--GGIEFDGDGGVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhccc-c--cccccCccCCcccchHHHHHHHHHHHHH
Confidence 468999999999999999999999864 4557766654421110000 0 0000000 00011 1123334
Q ss_pred HHHHHhcCCCeEEEeccCC-CHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 90 QKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 90 ~~~l~~~~~~~~iidg~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
...+. .+..+|+|.... .......+.. ....+.+.|++.+|.+++.+|..+|
T Consensus 79 ~~~l~--~G~~VIvD~~~~~~~~~r~~~~~-~~~~~~~~v~l~~~~~~l~~R~~~R 131 (175)
T cd00227 79 AAMAR--AGANVIADDVFLGRAALQDCWRS-FVGLDVLWVGVRCPGEVAEGRETAR 131 (175)
T ss_pred HHHHh--CCCcEEEeeeccCCHHHHHHHHH-hcCCCEEEEEEECCHHHHHHHHHhc
Confidence 44333 488899997443 3444444444 2223457999999999999999998
No 84
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.8e-13 Score=91.21 Aligned_cols=152 Identities=17% Similarity=0.217 Sum_probs=100.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCH----HHHHH---HHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS----EVTIK---LLQKAM 93 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~l 93 (196)
+.+|++.|++||||||+++.|++++++.+++.||+.-.... .-+..|..+.+ .+..+ .+...+
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~Nv----------eKM~~GipLnD~DR~pWL~~i~~~~~~~l 81 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANV----------EKMTQGIPLNDDDRWPWLKKIAVELRKAL 81 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHH----------HHHhcCCCCCcccccHHHHHHHHHHHHHh
Confidence 45899999999999999999999999999999887544311 11222333222 23322 222233
Q ss_pred HhcCCCeEEEeccCCCHHHHHHHHhh-----cCCCC---cEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029252 94 EESGNDKFLIDGFPRNEENRAAFEAV-----TKIEP---EFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE 165 (196)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~~~~~-----~~~~~---~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~ 165 (196)
. .++++|+-........++.+... ....+ -.+++|..+.+++.+|+..| .....+.+-++.++.....
T Consensus 82 ~--~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R--~gHFMp~~lleSQf~~LE~ 157 (191)
T KOG3354|consen 82 A--SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKR--KGHFMPADLLESQFATLEA 157 (191)
T ss_pred h--cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhc--ccccCCHHHHHHHHHhccC
Confidence 3 48889998876666666666552 11112 34899999999999999999 5566666667766654431
Q ss_pred cchhHHHHHHhcCcEEEEeCC-CCceeEE
Q 029252 166 SSLPVVQYYEAKGKVRKVIFC-SPIFILV 193 (196)
Q Consensus 166 ~~~~~~~~~~~~~~~~~id~~-~~~e~v~ 193 (196)
|- .+..+++.|+.. .++|+++
T Consensus 158 ---p~----~~e~div~isv~~~~~e~iv 179 (191)
T KOG3354|consen 158 ---PD----ADEEDIVTISVKTYSVEEIV 179 (191)
T ss_pred ---CC----CCccceEEEeeccCCHHHHH
Confidence 11 233368888887 6776654
No 85
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=4.1e-13 Score=88.95 Aligned_cols=144 Identities=19% Similarity=0.215 Sum_probs=95.5
Q ss_pred cCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHH---HHHHHHHHHHHhc--CCCeEE
Q 029252 28 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE---VTIKLLQKAMEES--GNDKFL 102 (196)
Q Consensus 28 G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~--~~~~~i 102 (196)
|.+||||||++..|++++++.+++-|++.-.. .+.+ +..|..+.++ -+...+...+.+. .+..+|
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGDdlHp~a---------Ni~K-M~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~v 71 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGDDLHPPA---------NIEK-MSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVV 71 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceecccccCCHH---------HHHH-HhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceE
Confidence 89999999999999999999999988864332 1111 2233333321 1123333333221 244466
Q ss_pred EeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEE
Q 029252 103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRK 182 (196)
Q Consensus 103 idg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (196)
+-.......+++.+.. .... ..+|||+.+.+++.+|+..| .....+..-+..++..... | .....++.
T Consensus 72 i~CSALKr~YRD~LR~-~~~~-~~Fv~L~g~~~~i~~Rm~~R--~gHFM~~~ll~SQfa~LE~---P-----~~de~vi~ 139 (161)
T COG3265 72 IACSALKRSYRDLLRE-ANPG-LRFVYLDGDFDLILERMKAR--KGHFMPASLLDSQFATLEE---P-----GADEDVLT 139 (161)
T ss_pred EecHHHHHHHHHHHhc-cCCC-eEEEEecCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhcC---C-----CCCCCEEE
Confidence 6666566666666665 3323 46999999999999999999 7777777777777655431 1 22226999
Q ss_pred EeCCCCceeEE
Q 029252 183 VIFCSPIFILV 193 (196)
Q Consensus 183 id~~~~~e~v~ 193 (196)
||.+.++++++
T Consensus 140 idi~~~~e~vv 150 (161)
T COG3265 140 IDIDQPPEEVV 150 (161)
T ss_pred eeCCCCHHHHH
Confidence 99999998775
No 86
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.49 E-value=9.1e-13 Score=96.63 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=92.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHc-----CCCCCHHHH-----------
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT----------- 85 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----------- 85 (196)
.+|.|+|.+||||||+++.|.+++|+.+++.|.+.++.+..+.+....+...+.. ...+.....
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999998899999999999999877665433333222211 111211111
Q ss_pred -----------HHHHHHHHHh-----------cC-CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHh
Q 029252 86 -----------IKLLQKAMEE-----------SG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (196)
Q Consensus 86 -----------~~~~~~~l~~-----------~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~ 142 (196)
...+...+.+ .. ...+|+|. |...+.. . ....+|.++++.+|.++..+|+.
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-PLL~E~~-~----~~~~~D~iv~V~a~~e~ri~RL~ 155 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-PTLFETK-T----FTYFVSASVVVSCSEERQIERLR 155 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-chhhccC-c----hhhcCCeEEEEECCHHHHHHHHH
Confidence 1111111210 01 23566773 2222210 0 11246899999999999999999
Q ss_pred hccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCC--CCceeE
Q 029252 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFC--SPIFIL 192 (196)
Q Consensus 143 ~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~e~v 192 (196)
+| ...+.+.+.+|+.... +. .......++ +|+++ .+++++
T Consensus 156 ~R----~g~s~eea~~Ri~~Q~---~~--~ek~~~aD~-VI~N~~~g~~~~L 197 (244)
T PTZ00451 156 KR----NGFSKEEALQRIGSQM---PL--EEKRRLADY-IIENDSADDLDEL 197 (244)
T ss_pred Hc----CCCCHHHHHHHHHhCC---CH--HHHHHhCCE-EEECCCCCCHHHH
Confidence 88 3456677888875522 11 122334444 56666 666653
No 87
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.49 E-value=6.9e-13 Score=96.53 Aligned_cols=168 Identities=17% Similarity=0.239 Sum_probs=95.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec---HHHHHHHHHHcC--------Cc-c-hHHHHHHHHcCCC------
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS---AGDLLRAEIKSG--------SE-N-GTMIQNMIKEGKI------ 79 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~---~~d~~~~~~~~~--------~~-~-~~~~~~~~~~~~~------ 79 (196)
.+.++|++.|+.|||||++|+.||+++++.++. +|+++-...... .+ . ...+.........
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~ 148 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAM 148 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHH
Confidence 356899999999999999999999999976654 555443321110 00 0 0111111111100
Q ss_pred ------CCHHHHHHHHHHHHHhcCCCeEEEeccCCC-HHHHHHHHh--------------h------cCCCCcEEEEEEc
Q 029252 80 ------VPSEVTIKLLQKAMEESGNDKFLIDGFPRN-EENRAAFEA--------------V------TKIEPEFVLFFDC 132 (196)
Q Consensus 80 ------~~~~~~~~~~~~~l~~~~~~~~iidg~~~~-~~~~~~~~~--------------~------~~~~~~~~i~l~~ 132 (196)
...+.+.+.++..+. .+++|+++..|.+ .-..+.+.+ + ....|.++|||++
T Consensus 149 Q~r~y~~R~~QY~dAL~HiL~--TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~ 226 (393)
T KOG3877|consen 149 QDRIYNCRFDQYLDALAHILN--TGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT 226 (393)
T ss_pred HHHHHHhHHHHHHHHHHHHHh--cCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence 001122333443343 4899999986643 222222111 1 4577889999999
Q ss_pred CHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcc-hhHHHHHHhcCcEEEEeCCCCce
Q 029252 133 SEEEMERRILNRNQGREDDNVETIRKRFKVFLESS-LPVVQYYEAKGKVRKVIFCSPIF 190 (196)
Q Consensus 133 ~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~id~~~~~e 190 (196)
|...++++++.| |.+++-.-.-...++...+.+ ..++..|..++.+...|.+.+-+
T Consensus 227 Pv~~v~~~Ik~r--g~~~Eik~~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gd 283 (393)
T KOG3877|consen 227 PVNKVLENIKRR--GNTDEIKTVSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGD 283 (393)
T ss_pred CcHHHHHHHHhc--CCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCC
Confidence 999999999999 544433111111111111111 13356677778888888886554
No 88
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.49 E-value=4.8e-13 Score=95.51 Aligned_cols=152 Identities=18% Similarity=0.121 Sum_probs=90.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCH---------------
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPS--------------- 82 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--------------- 82 (196)
+|+|+|++||||||+++.|+ .+|..+++.|.+.+..+..+.+....+.+.+... ..+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~-~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILE-ELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHH-HCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 47999999999999999886 4799999999999988776654333333322111 11111
Q ss_pred ---HHH----HHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHH
Q 029252 83 ---EVT----IKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (196)
Q Consensus 83 ---~~~----~~~~~~~l~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~ 154 (196)
.+. ...+...+... .+..+|+| .|...+. . ....+|.++|+++|++++.+|+..| ...+.+
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e-~pLL~E~-~-----~~~~~D~vi~V~a~~e~r~~RL~~R----~g~s~e 148 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWE-VPLLFET-D-----AYTLCDATVTVDSDPEESILRTISR----DGMKKE 148 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEE-eeeeeEc-C-----chhhCCEEEEEECCHHHHHHHHHHc----CCCCHH
Confidence 111 22222223222 13445555 3333221 0 1224789999999999999999988 334567
Q ss_pred HHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
....|+.... +.. ......++ +|+++.+++++
T Consensus 149 ~a~~ri~~Q~----~~~-~k~~~aD~-vI~N~~~~~~l 180 (196)
T PRK14732 149 DVLARIASQL----PIT-EKLKRADY-IVRNDGNREGL 180 (196)
T ss_pred HHHHHHHHcC----CHH-HHHHhCCE-EEECCCCHHHH
Confidence 7777775522 222 22333444 56777676653
No 89
>PTZ00301 uridine kinase; Provisional
Probab=99.49 E-value=1.9e-13 Score=98.31 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=64.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHHHcCCcchHHHHHHHHcC--CCCCHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG--KIVPSEVTIKLLQ 90 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 90 (196)
+..+|.|.|+|||||||+|+.|+++++ ..+++.|++++.... ...........+ .....+.+...+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~----~~~~~~~~~~~d~p~a~D~~~l~~~l~ 77 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSN----IPESERAYTNYDHPKSLEHDLLTTHLR 77 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCccc----CCHHHhcCCCCCChhhhCHHHHHHHHH
Confidence 357899999999999999999988762 236677776643210 000000000000 0011111222221
Q ss_pred HHHH----------------------hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 91 KAME----------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 91 ~~l~----------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.... -.+...+|+||.+.... ..+.. ..|+.||+++|.++++.|...|
T Consensus 78 ~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~----l~D~~ifvd~~~d~~~~Rr~~R 147 (210)
T PTZ00301 78 ELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRN----EMDCLIFVDTPLDICLIRRAKR 147 (210)
T ss_pred HHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHH----hCCEEEEEeCChhHHHHHHHhh
Confidence 1110 01245677899765211 12222 4678999999999999999999
No 90
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.49 E-value=7.4e-13 Score=108.02 Aligned_cols=117 Identities=18% Similarity=0.246 Sum_probs=76.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
.+...|+|.|+|||||||+++.||+++++.+++.|+.+.+.. +..+.+++ ..|...+.++-...+...+..
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~-- 75 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED-- 75 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 345679999999999999999999999999999999887763 23333333 334444444545555554432
Q ss_pred CCeEEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 98 NDKFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 98 ~~~~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
...+|--| .....+....+.+. ...--.+|||++|++++.+|+..+
T Consensus 76 ~~~VIs~GGG~v~~~~n~~~L~~~-~~~~g~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 76 FDGIFSLGGGAPMTPSTQHALASY-IAHGGRVVYLDADPKEAMERANRG 123 (542)
T ss_pred CCeEEECCCchhCCHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHhCC
Confidence 33344222 34444544444321 111236999999999999998754
No 91
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.48 E-value=3.3e-12 Score=89.77 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=88.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----HHcCCcchHHHHHHHHcCCCCCH-HHHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAMEE 95 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 95 (196)
+.+++|.|++||||||+++.|+..++..+++.+++.... ...+-.+.. ....++ ....+..... ..
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~--------~~~~~~~~~~~~~~~~~-~~ 73 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTD--------EDRLPWLERLNDASYSL-YK 73 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCc--------ccchHHHHHHHHHHHHH-Hh
Confidence 457999999999999999999999988888776643211 000110000 000111 1111222111 12
Q ss_pred cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (196)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (196)
....++|+..+ ......+.+.+ ...+..+|||++|++++.+|+.+| .....+.+.+..++..+.. + ..
T Consensus 74 ~~~~g~iv~s~-~~~~~R~~~r~--~~~~~~~v~l~a~~~~l~~Rl~~R--~~~~~~~~vl~~Q~~~~e~---~----~~ 141 (176)
T PRK09825 74 KNETGFIVCSS-LKKQYRDILRK--SSPNVHFLWLDGDYETILARMQRR--AGHFMPPDLLQSQFDALER---P----CA 141 (176)
T ss_pred cCCCEEEEEEe-cCHHHHHHHHh--hCCCEEEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHcCC---C----CC
Confidence 12556676443 44444454443 334557999999999999999999 3344555666665544431 1 11
Q ss_pred hcCcEEEEeCCCCceeE
Q 029252 176 AKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 176 ~~~~~~~id~~~~~e~v 192 (196)
.+..++.+|++.+++++
T Consensus 142 ~e~~~~~~d~~~~~~~~ 158 (176)
T PRK09825 142 DEHDIARIDVNHDIENV 158 (176)
T ss_pred CcCCeEEEECCCCHHHH
Confidence 22359999999987543
No 92
>COG0645 Predicted kinase [General function prediction only]
Probab=99.48 E-value=5.3e-12 Score=85.95 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=86.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCH---HH---HHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS---EV---TIKLLQKAMEE 95 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~l~~ 95 (196)
.++++.|.|||||||+|+.|++.++...|..|++-+..... +.....- .|-+.+. .. ........+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~-p~~~r~~-----~g~ys~~~~~~vy~~l~~~A~l~l~- 74 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGV-PEETRGP-----AGLYSPAATAAVYDELLGRAELLLS- 74 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCC-cccccCC-----CCCCcHHHHHHHHHHHHHHHHHHHh-
Confidence 57899999999999999999999999999997766655331 1110000 1111111 11 1222233333
Q ss_pred cCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252 96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV 162 (196)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (196)
.+..+|+|+.+....++...... ....+..+|.+++|.+++..|+..|..+-++.....+..+...
T Consensus 75 -~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il~~q~~~ 142 (170)
T COG0645 75 -SGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDILRVQLAE 142 (170)
T ss_pred -CCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHHHHHHhh
Confidence 49999999977777777666553 3333456899999999999999999333455555555554433
No 93
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.48 E-value=1.6e-12 Score=92.15 Aligned_cols=135 Identities=21% Similarity=0.277 Sum_probs=86.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCc--------chHHHHHHHHcCCCCCHH-------
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSE--------NGTMIQNMIKEGKIVPSE------- 83 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~------- 83 (196)
.++.+|+|.|||||||||+++.|.+++...+++.....|.. +.++. ..+.+..++..+.++.+.
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y 80 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY 80 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence 35789999999999999999999988743344444444433 21211 125566666666654332
Q ss_pred -HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC-HHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029252 84 -VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFK 161 (196)
Q Consensus 84 -~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~r~~~~~~~~~~~~~ 161 (196)
+....+...+. .++.+|+|-. .+....+.. .....-++||+.+| .+++.+|+.+| ...+.+.+.+|+.
T Consensus 81 Gt~~~~i~~~~~--~g~~~i~d~~---~~g~~~l~~-~~~~~~~~Ifi~pps~e~l~~RL~~R----~~~s~e~i~~Rl~ 150 (186)
T PRK14737 81 GTPKAFIEDAFK--EGRSAIMDID---VQGAKIIKE-KFPERIVTIFIEPPSEEEWEERLIHR----GTDSEESIEKRIE 150 (186)
T ss_pred cCcHHHHHHHHH--cCCeEEEEcC---HHHHHHHHH-hCCCCeEEEEEECCCHHHHHHHHHhc----CCCCHHHHHHHHH
Confidence 22555666665 5888888843 344444444 33222257888775 68899999877 4446678888887
Q ss_pred HHH
Q 029252 162 VFL 164 (196)
Q Consensus 162 ~~~ 164 (196)
...
T Consensus 151 ~~~ 153 (186)
T PRK14737 151 NGI 153 (186)
T ss_pred HHH
Confidence 644
No 94
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.47 E-value=3.4e-13 Score=97.31 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=90.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCCHH-------
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE------- 83 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~------- 83 (196)
+.++.+|+|+|||||||||+++.|.+......+......+..-.. +.. ....+...+..+.++.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 456789999999999999999999764321111111111110000 000 113344444444443221
Q ss_pred -HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEc--CHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029252 84 -VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC--SEEEMERRILNRNQGREDDNVETIRKRF 160 (196)
Q Consensus 84 -~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~--~~~~~~~R~~~R~~~r~~~~~~~~~~~~ 160 (196)
+....+...+. .+..+|++... +....+.+ ..|+.++++.+ +.+++.+|+..| + .++.+.+.+|+
T Consensus 90 Gt~~~~i~~~~~--~g~~vi~~~~~---~g~~~l~~---~~pd~~~if~~pps~e~l~~Rl~~R--~--~~~~~~~~~Rl 157 (206)
T PRK14738 90 GVPKAPVRQALA--SGRDVIVKVDV---QGAASIKR---LVPEAVFIFLAPPSMDELTRRLELR--R--TESPEELERRL 157 (206)
T ss_pred cCCHHHHHHHHH--cCCcEEEEcCH---HHHHHHHH---hCCCeEEEEEeCCCHHHHHHHHHHc--C--CCCHHHHHHHH
Confidence 11345665555 47778888533 33444443 23666655555 456889999988 3 34567788888
Q ss_pred HHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 161 KVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
..+...... .....++.||++.++++++
T Consensus 158 ~~~~~e~~~-----~~~~~~~iId~~~~~e~v~ 185 (206)
T PRK14738 158 ATAPLELEQ-----LPEFDYVVVNPEDRLDEAV 185 (206)
T ss_pred HHHHHHHhc-----ccCCCEEEECCCCCHHHHH
Confidence 776543221 1223588999988887654
No 95
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.47 E-value=3.5e-12 Score=102.76 Aligned_cols=101 Identities=22% Similarity=0.354 Sum_probs=78.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
..++.+|+|.|+|||||||+|+.++...++.+++.|++-. .......+...+. .
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L~--~ 419 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERALD--Q 419 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHHh--C
Confidence 4567899999999999999999999999999999977521 1112344555665 4
Q ss_pred CCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
+..+|+|........+..+.++ ...-+..++|+++|.+++++|+..|
T Consensus 420 G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R 468 (526)
T TIGR01663 420 GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR 468 (526)
T ss_pred CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence 8889999988888777776665 2333446999999999999999999
No 96
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.47 E-value=6.6e-13 Score=96.13 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=66.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME- 94 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 94 (196)
.++.+|.|.|+|||||||+++.|++.++ ..+++.|+++...... +.................+.....+.....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 81 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL--SFEERVKTNYDHPDAFDHDLLIEHLKALKAG 81 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC--CHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence 4678999999999999999999999983 4567777765432000 000000000000001111122222222111
Q ss_pred ---------------------hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 95 ---------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 95 ---------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
......+|+||.+.... .. ....+|.+||+++|.+++.+|...|
T Consensus 82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~----~~~~~d~~I~v~~~~~~~~~R~~~R 146 (209)
T PRK05480 82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ER----LRDLMDIKIFVDTPLDIRLIRRLKR 146 (209)
T ss_pred CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hh----HhhhhceeEEEeCChhHHHHHHHhh
Confidence 11234678898654321 11 1224688999999999999999988
No 97
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.46 E-value=1.7e-12 Score=99.15 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=70.7
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (196)
...++..|+|+|+|||||||+++.|++++++.+++.|..+.... +....+.+.. .|......+....+...+..
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~--G~~i~ei~~~---~G~~~fr~~e~~~l~~ll~~- 202 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA--GLSVSEIFAL---YGQEGYRRLERRALERLIAE- 202 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhh-
Confidence 34566899999999999999999999999999999987766542 1111111111 12211222223344443332
Q ss_pred CCCeEEEeccC--CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 97 GNDKFLIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 97 ~~~~~iidg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
....+|-.|.. ........+.. ..++|||++|++++.+|+..|
T Consensus 203 ~~~~VI~~Ggg~v~~~~~~~~l~~-----~~~~V~L~a~~e~~~~Rl~~r 247 (309)
T PRK08154 203 HEEMVLATGGGIVSEPATFDLLLS-----HCYTVWLKASPEEHMARVRAQ 247 (309)
T ss_pred CCCEEEECCCchhCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHhcC
Confidence 23334433322 22222222222 346999999999999999887
No 98
>PRK13976 thymidylate kinase; Provisional
Probab=99.46 E-value=8e-12 Score=90.07 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=67.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCC-CHHH-----------
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV-PSEV----------- 84 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------- 84 (196)
++|+++|+.||||||+++.|++.|.. .++.. + .+++...++.+.+.+...... +...
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~----~--eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~ 74 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT----R--EPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH 74 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe----e--CCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999998842 11111 0 012334445555544321111 1111
Q ss_pred HHHHHHHHHHhcCCCeEEEeccCCC------------HHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 85 TIKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 85 ~~~~~~~~l~~~~~~~~iidg~~~~------------~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
....+...+. .+..||.|.|..+ .+....+... ....||++|||++|++++.+|+..|
T Consensus 75 ~~~~I~p~l~--~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~ 145 (209)
T PRK13976 75 FVKVILPALL--QGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN 145 (209)
T ss_pred HHHHHHHHHH--CCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc
Confidence 0122333333 4788999975422 1122222221 3356999999999999999998644
No 99
>PRK12338 hypothetical protein; Provisional
Probab=99.46 E-value=4.6e-12 Score=95.78 Aligned_cols=124 Identities=18% Similarity=0.308 Sum_probs=77.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC--Ccc-----hHHHHHH--HHcCC-CCC--------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--SEN-----GTMIQNM--IKEGK-IVP-------- 81 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~--~~~-----~~~~~~~--~~~~~-~~~-------- 81 (196)
+|.+|+|.|+|||||||+|+.|++++++.++..+|.+++...+. .++ ...+..+ +.... ..+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~g 82 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAG 82 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHH
Confidence 46799999999999999999999999999987788888876651 111 0111111 11000 001
Q ss_pred ----HHHHHHHHHHHHHh--cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 82 ----SEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 82 ----~~~~~~~~~~~l~~--~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.......+...+.. .++..+|+||....+........ ........+++..+++...+|+..|
T Consensus 83 f~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~-~~~~~v~~~vl~~dee~h~~Rf~~R 150 (319)
T PRK12338 83 FEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQF-EENASIHFFILSADEEVHKERFVKR 150 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhh-cccCceEEEEEECCHHHHHHHHHHh
Confidence 11222222222221 25889999998877766553221 1222334666678999999999998
No 100
>PLN02199 shikimate kinase
Probab=99.46 E-value=8e-12 Score=93.09 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=72.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
+...|+|+|++||||||+++.|++.+++.+++.|.++.+... +....+.+. ..|.....+.....+.+... ...
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~sI~eIf~---~~GE~~FR~~E~e~L~~L~~--~~~ 174 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTSVAEIFV---HHGENFFRGKETDALKKLSS--RYQ 174 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCCHHHHHH---HhCHHHHHHHHHHHHHHHHh--cCC
Confidence 457899999999999999999999999999999998888632 222222221 22333333333444444332 133
Q ss_pred eEEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252 100 KFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (196)
Q Consensus 100 ~~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 143 (196)
.||--| ..........+. --.+|||++|.+++.+|+..
T Consensus 175 ~VIStGGG~V~~~~n~~~L~------~G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 175 VVVSTGGGAVIRPINWKYMH------KGISIWLDVPLEALAHRIAA 214 (303)
T ss_pred EEEECCCcccCCHHHHHHHh------CCeEEEEECCHHHHHHHHhh
Confidence 343222 333333333322 13699999999999999985
No 101
>PRK06696 uridine kinase; Validated
Probab=99.44 E-value=1.1e-12 Score=95.85 Aligned_cols=120 Identities=19% Similarity=0.266 Sum_probs=68.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh---CC--cEecHHHHHHHHHHc---C--Cc-------c-hHHHHHHH-H---
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEIKS---G--SE-------N-GTMIQNMI-K--- 75 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~---~~--~~~~~~d~~~~~~~~---~--~~-------~-~~~~~~~~-~--- 75 (196)
...+.+|+|.|+|||||||+|+.|++.+ +. .++++|+++...... + .+ + ...+...+ .
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 4568999999999999999999999998 43 345677776543211 0 11 0 11111111 1
Q ss_pred cCCC--CC---HHHHHHH-HHHH-HHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 76 EGKI--VP---SEVTIKL-LQKA-MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 76 ~~~~--~~---~~~~~~~-~~~~-l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.+.. +. .+..... .... ........+|+||....... + ...+|.+||+++|.+++.+|+..|
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~---~----~~~~d~~i~v~~~~e~~~~R~~~R 167 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPE---L----RDLWDYKIFLDTDFEVSRRRGAKR 167 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhh---H----HhhCCEEEEEECCHHHHHHHHHHh
Confidence 1110 11 0111111 1001 11112456788985432111 1 124678999999999999999988
No 102
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.44 E-value=4.3e-12 Score=88.83 Aligned_cols=129 Identities=18% Similarity=0.234 Sum_probs=71.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCCcc---hHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSEN---GTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (196)
++|+++|+|||||||+|+.|++.+. +.+++...-+...+...+.+ .+........ .. ..++..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~k------s~-~rlldSalk- 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLK------SV-ERLLDSALK- 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHH------HH-HHHHHHHhc-
Confidence 5799999999999999999999884 33332221111111111111 1111111111 11 224555554
Q ss_pred cCCCeEEEeccCCCHHHH---HHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252 96 SGNDKFLIDGFPRNEENR---AAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL 164 (196)
Q Consensus 96 ~~~~~~iidg~~~~~~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~ 164 (196)
++.||+|........+ ..... ....+..+||+.+|.++|.+|...| |.+- +.+.+.+-+..|.
T Consensus 74 --n~~VIvDdtNYyksmRrqL~ceak-~~~tt~ciIyl~~plDtc~rrN~er--gepi-p~Evl~qly~RfE 139 (261)
T COG4088 74 --NYLVIVDDTNYYKSMRRQLACEAK-ERKTTWCIIYLRTPLDTCLRRNRER--GEPI-PEEVLRQLYDRFE 139 (261)
T ss_pred --ceEEEEecccHHHHHHHHHHHHHH-hcCCceEEEEEccCHHHHHHhhccC--CCCC-CHHHHHHHHHhhc
Confidence 7788899743322222 22222 5666788999999999999999777 3332 2344444444443
No 103
>COG4639 Predicted kinase [General function prediction only]
Probab=99.44 E-value=1.5e-11 Score=82.27 Aligned_cols=125 Identities=20% Similarity=0.137 Sum_probs=82.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
..++++.|+|||||||+++.. ..+...++.+++-...-.. ...... .....-+++....++..+. .++
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~~-------~~~e~sqk~~~~~~~~l~~~l~qrl~--~Gk 70 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGVS-------ASKENSQKNDELVWDILYKQLEQRLR--RGK 70 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhhc-------hhhhhccccHHHHHHHHHHHHHHHHH--cCC
Confidence 568999999999999999864 3367788887866543110 011111 1111223455666676666 589
Q ss_pred eEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHH
Q 029252 100 KFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKR 159 (196)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~ 159 (196)
..|+|.+....+.+..+.++ ...-..+.++++.|.+.|.+|...| ..+.+++.+...
T Consensus 71 ~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~---~Rqv~~~VI~r~ 129 (168)
T COG4639 71 FTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR---ERQVPEEVIPRM 129 (168)
T ss_pred eEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc---chhCCHHHHHHH
Confidence 99999998888887777665 3333456899999999999998755 223444444443
No 104
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.43 E-value=4.5e-12 Score=88.10 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=79.7
Q ss_pred EcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HHc---CCcchHHHHHHHHcCCCCCH-HHHHHHHHHHHHhcCCCeE
Q 029252 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKS---GSENGTMIQNMIKEGKIVPS-EVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 27 ~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 101 (196)
.|+|||||||+++.|++.++..+++.|.+.... ... +.++... ...++ ............ ..+..+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~v 71 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD--------DRKPWLQALNDAAFAMQR-TNKVSL 71 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh--------hHHHHHHHHHHHHHHHHH-cCCceE
Confidence 499999999999999999998888886542110 010 1111110 00001 011111111111 124445
Q ss_pred EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEE
Q 029252 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (196)
|+ ...........+.+ ...+..++||++|++++.+|+..|.. ...+.+.+..++..+. +. -.....++
T Consensus 72 iv-~s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl~~R~~--~~a~~~vl~~Q~~~~e----p~---~~~e~~~~ 139 (163)
T PRK11545 72 IV-CSALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRLKARKG--HFFKTQMLVTQFETLQ----EP---GADETDVL 139 (163)
T ss_pred EE-EecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHHHhccC--CCCCHHHHHHHHHHcC----CC---CCCCCCEE
Confidence 55 43344444444443 33455799999999999999999922 2234555555544332 11 01112478
Q ss_pred EEeCCCCceeE
Q 029252 182 KVIFCSPIFIL 192 (196)
Q Consensus 182 ~id~~~~~e~v 192 (196)
.+|++.+.+++
T Consensus 140 ~id~~~~~~~~ 150 (163)
T PRK11545 140 VVDIDQPLEGV 150 (163)
T ss_pred EEeCCCCHHHH
Confidence 99999886654
No 105
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.42 E-value=8.9e-12 Score=86.73 Aligned_cols=154 Identities=15% Similarity=0.178 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCC-----CCH--------------
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----VPS-------------- 82 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------------- 82 (196)
.++.++|..||||||+++.+ +++|+++++.|-+.|+.+.++.+.-..+...++..-. +..
T Consensus 2 ~iVGLTGgiatGKStVs~~f-~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVF-KALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHH-HHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 36899999999999999988 5999999999999999998876654444443322211 111
Q ss_pred ---------HHHHHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc
Q 029252 83 ---------EVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (196)
Q Consensus 83 ---------~~~~~~~~~~l~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~ 152 (196)
.+...++++.+... .++.+|+=..|...+. .. ......+|++.||.++..+|+.+| ...+
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~-~~-----~~~~~~tvvV~cd~~~Ql~Rl~~R----d~ls 150 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA-KL-----LKICHKTVVVTCDEELQLERLVER----DELS 150 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH-hH-----HhheeeEEEEEECcHHHHHHHHHh----cccc
Confidence 11122222222111 2555554335544433 11 123556999999999999999998 3566
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
++..+.|++... ++.++.... -+++|++.+++++
T Consensus 151 e~dAe~Rl~sQm----p~~~k~~~a--~~Vi~Nng~~~~l 184 (225)
T KOG3220|consen 151 EEDAENRLQSQM----PLEKKCELA--DVVIDNNGSLEDL 184 (225)
T ss_pred HHHHHHHHHhcC----CHHHHHHhh--heeecCCCChHHH
Confidence 677777665443 444433322 3478888777653
No 106
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.42 E-value=3.2e-12 Score=92.41 Aligned_cols=121 Identities=17% Similarity=0.243 Sum_probs=66.5
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHH------cCCcc-------hHHHHHH---HHcCC
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIK------SGSEN-------GTMIQNM---IKEGK 78 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~------~~~~~-------~~~~~~~---~~~~~ 78 (196)
++++.+|+|.|++||||||+++.|+..++ ..+++.|+.+..... .+..+ ...+.+. +..+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 45668999999999999999999998875 456777665432100 00000 0000000 11111
Q ss_pred CCCHHHHH----HHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 79 IVPSEVTI----KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 79 ~~~~~~~~----~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.+....+. ..............+|+||.+...+. .+. ..++.+||+++|.+++.+|+..|
T Consensus 83 ~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~----~~~d~~I~v~~~~~~~l~R~~~R 146 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLR----DLMDLKIFVDTPLDIRLIRRIER 146 (207)
T ss_pred CEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHH----HhCCEEEEEECChhHHHHHHHHH
Confidence 11100000 00000000012456889987653321 122 24778999999999999999888
No 107
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.42 E-value=3.2e-12 Score=100.55 Aligned_cols=154 Identities=17% Similarity=0.150 Sum_probs=89.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCH--------------
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPS-------------- 82 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------------- 82 (196)
..|+|+|++||||||+++.|++ +|+.+++.|.+.++.+..+......+...+..+ ..+..
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 3599999999999999999986 899999999999998776553322222222111 11111
Q ss_pred --------HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHH
Q 029252 83 --------EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (196)
Q Consensus 83 --------~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~ 154 (196)
..+...+.+.+....+..+++.+.+...+. . ....+|.+||+++|.+++.+|+..| ...+.+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~-~-----~~~~~D~iI~V~ap~e~ri~Rl~~r----Rg~s~~ 150 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES-G-----MAPLFHLVVVVDADVEVRVRRLVEQ----RGMAEA 150 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC-C-----chhhCCEEEEEECCHHHHHHHHHhc----CCCCHH
Confidence 111222333333333455666655433322 0 1224789999999999999999885 122334
Q ss_pred HHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
....++..... . +...... -++|+++.+.+++
T Consensus 151 ~a~~ri~~Q~~----~-e~k~~~A-D~vIdN~~s~e~l 182 (395)
T PRK03333 151 DARARIAAQAS----D-EQRRAVA-DVWLDNSGTPDEL 182 (395)
T ss_pred HHHHHHHhcCC----h-HHHHHhC-CEEEECCCCHHHH
Confidence 44444433211 1 1112223 3467777765543
No 108
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.42 E-value=1.8e-12 Score=91.64 Aligned_cols=152 Identities=16% Similarity=0.240 Sum_probs=82.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCc---EecHHHHHHHHHHcCCc----chHHHHHHHHcCCCC--------CHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSE----NGTMIQNMIKEGKIV--------PSEVTI 86 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~---~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~~~ 86 (196)
.+++|.|+|||||||+++.|+..++.. .+....+.+.....+.. ....+......+.+. ......
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 478999999999999999999987531 12111111111001111 112222222222221 000111
Q ss_pred HHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029252 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES 166 (196)
Q Consensus 87 ~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~ 166 (196)
.+...+. .+..+|+++... ....+.+ .. ....+|||++|.+++.+|+..| +++ ..+.+.+++.....
T Consensus 82 -~i~~~~~--~g~~vv~~g~~~---~~~~~~~-~~-~~~~~i~l~~~~~~~~~Rl~~R--~~~--~~~~~~~rl~~~~~- 148 (179)
T TIGR02322 82 -EIDQWLE--AGDVVVVNGSRA---VLPEARQ-RY-PNLLVVNITASPDVLAQRLAAR--GRE--SREEIEERLARSAR- 148 (179)
T ss_pred -HHHHHHh--cCCEEEEECCHH---HHHHHHH-HC-CCcEEEEEECCHHHHHHHHHHc--CCC--CHHHHHHHHHHHhh-
Confidence 2333333 467788987532 2222222 22 2346999999999999999988 443 34567776643321
Q ss_pred chhHHHHHH-hcCcEEEEeCCCCceeEE
Q 029252 167 SLPVVQYYE-AKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 167 ~~~~~~~~~-~~~~~~~id~~~~~e~v~ 193 (196)
|. ....++.++++.++++++
T Consensus 149 -------~~~~~~~~~vi~~~~~~ee~~ 169 (179)
T TIGR02322 149 -------FAAAPADVTTIDNSGSLEVAG 169 (179)
T ss_pred -------cccccCCEEEEeCCCCHHHHH
Confidence 11 223577788888887654
No 109
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.42 E-value=1e-11 Score=87.69 Aligned_cols=38 Identities=32% Similarity=0.551 Sum_probs=36.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~ 59 (196)
+.|.|-||+||||||+|+.||++||+.+++.+.++|..
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 78999999999999999999999999999999988874
No 110
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.41 E-value=8.1e-12 Score=100.26 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~ 59 (196)
++.+|.|.|++||||||+++.|++++++.+++.++++|..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 5689999999999999999999999999999999998874
No 111
>PLN02348 phosphoribulokinase
Probab=99.41 E-value=3e-12 Score=98.85 Aligned_cols=133 Identities=14% Similarity=0.195 Sum_probs=74.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCC--------------------cEecHHHHHHHHHH--cCCcchHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY--------------------THLSAGDLLRAEIK--SGSENGTMIQNMIK 75 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~--------------------~~~~~~d~~~~~~~--~~~~~~~~~~~~~~ 75 (196)
...+.+|.|.|+|||||||+++.|++.++. .++++||+...... ...... .+.
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t-----~ld 120 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVT-----ALD 120 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCc-----cCC
Confidence 356789999999999999999999999852 46888887532111 000000 000
Q ss_pred cCCCCCHHHHHHHHHHHHH---------------------hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCH
Q 029252 76 EGKIVPSEVTIKLLQKAME---------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (196)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~---------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~ 134 (196)
......+.+...+..... -.+...+|+||.+..... . ....+|+.||+++++
T Consensus 121 -P~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e--~----lr~l~D~~IyVd~~~ 193 (395)
T PLN02348 121 -PRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE--R----VRDLLDFSIYLDISD 193 (395)
T ss_pred -cccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc--c----ccccCcEEEEEECCH
Confidence 000011112222221110 012567888985432221 1 223578999999999
Q ss_pred HHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252 135 EEMERRILNRNQGREDDNVETIRKRFKV 162 (196)
Q Consensus 135 ~~~~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (196)
++.+.|..+|...+...+.+.+.++++.
T Consensus 194 dvrl~RRI~RD~~eRG~S~EeV~~~i~a 221 (395)
T PLN02348 194 DVKFAWKIQRDMAERGHSLESIKASIEA 221 (395)
T ss_pred HHHHHHHHHhhHhhcCCCHHHHHHHHHh
Confidence 9998888888211122345666666544
No 112
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.39 E-value=1.3e-11 Score=83.58 Aligned_cols=131 Identities=22% Similarity=0.323 Sum_probs=83.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHc-C-CcchHHHHHHHHcCCCCCHHHHHH---HHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKS-G-SENGTMIQNMIKEGKIVPSEVTIK---LLQKAME 94 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ 94 (196)
.++++++|.||+||||+++.+.+.+ ...+++.++++.+.... + ....+.+ ..++.+.... .....+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~-------Rklp~e~Q~~lq~~Aa~rI~ 76 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEM-------RKLPLENQRELQAEAAKRIA 76 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHH-------hcCCHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999988 77889999988775433 1 1222222 1223322222 2222332
Q ss_pred hcCCCeEEEeccCC----------CHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHH
Q 029252 95 ESGNDKFLIDGFPR----------NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVF 163 (196)
Q Consensus 95 ~~~~~~~iidg~~~----------~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~~~~ 163 (196)
+. ...+|+|.+.. .+.+.- ....|+.++.++.+++.+..|.... .+.|..++.+.+.+.++..
T Consensus 77 ~~-~~~iivDtH~~IkTP~GylpgLP~~Vl-----~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~n 150 (189)
T COG2019 77 EM-ALEIIVDTHATIKTPAGYLPGLPSWVL-----EELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMN 150 (189)
T ss_pred Hh-hhceEEeccceecCCCccCCCCcHHHH-----HhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 21 22278885321 111111 4567999999999999888887665 5567777788877755444
Q ss_pred H
Q 029252 164 L 164 (196)
Q Consensus 164 ~ 164 (196)
+
T Consensus 151 R 151 (189)
T COG2019 151 R 151 (189)
T ss_pred H
Confidence 3
No 113
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.39 E-value=1.2e-11 Score=89.65 Aligned_cols=165 Identities=21% Similarity=0.236 Sum_probs=89.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH----HcCCcc--hHHHHHHHHc---------C-------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSEN--GTMIQNMIKE---------G------- 77 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~----~~~~~~--~~~~~~~~~~---------~------- 77 (196)
|+++|.|.|++||||||+++.|++++++.+++.+++++... ..+-.. ...+...... +
T Consensus 1 ~~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (217)
T TIGR00017 1 MAMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLN 80 (217)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEc
Confidence 35789999999999999999999999999999998876541 111111 1111111100 0
Q ss_pred -CCCC-----------------HHHHHHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHH
Q 029252 78 -KIVP-----------------SEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138 (196)
Q Consensus 78 -~~~~-----------------~~~~~~~~~~~l~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~ 138 (196)
..+. ...+...+...+.+. ....||++|....-. .....++.|||++|.++..
T Consensus 81 ~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr~~~~~--------v~~~a~~~ifl~a~~~~Ra 152 (217)
T TIGR00017 81 GEDVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKNDGIIADGRDIGTV--------VFPNAEVKIFLDASVEERA 152 (217)
T ss_pred CcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEcCcceE--------EeCCCCEEEEEECCHHHHH
Confidence 0000 001122222222111 245799998521100 1223678999999999998
Q ss_pred HHHhhc-cCCCCCCcHHHHHHHHHHHH--hcchhHHHHHHhcCcEEEEeCC-CCceeEE
Q 029252 139 RRILNR-NQGREDDNVETIRKRFKVFL--ESSLPVVQYYEAKGKVRKVIFC-SPIFILV 193 (196)
Q Consensus 139 ~R~~~R-~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~id~~-~~~e~v~ 193 (196)
+|...| .......+.+.+.+++.... +..+.. .........++||++ .++++++
T Consensus 153 ~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~-~~~~~a~~~i~Idts~l~ieevv 210 (217)
T TIGR00017 153 KRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREV-APLKKADDALYLDTSNLSIDEVV 210 (217)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHhccccccc-CcccCCCCeEEEECCCCCHHHHH
Confidence 888877 11112344455666554331 222222 222333344667775 5666654
No 114
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.39 E-value=1.1e-12 Score=92.58 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=32.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRA 58 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~ 58 (196)
+|.|.|+|||||||+|+.|++.+ +..++++|+++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 48899999999999999999998 6888999888764
No 115
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.39 E-value=5.2e-12 Score=87.43 Aligned_cols=102 Identities=25% Similarity=0.395 Sum_probs=66.1
Q ss_pred CCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCCeEEEec--c
Q 029252 30 PGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGNDKFLIDG--F 106 (196)
Q Consensus 30 ~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~iidg--~ 106 (196)
|||||||+++.||+++++.+++.|+++.+... ..+.+.+. .|...........+.+.+.. ...||.-| .
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g------~si~~i~~~~G~~~fr~~E~~~l~~l~~~--~~~VIa~GGG~ 72 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG------MSISEIFAEEGEEAFRELESEALRELLKE--NNCVIACGGGI 72 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SSEEEEE-TTG
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC------CcHHHHHHcCChHHHHHHHHHHHHHHhcc--CcEEEeCCCCC
Confidence 79999999999999999999999999877632 22333331 22222233334555554442 24444332 5
Q ss_pred CCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 107 PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
....+..+.+.. .-.+|||+.+++++.+|+..+
T Consensus 73 ~~~~~~~~~L~~-----~g~vI~L~~~~~~l~~Rl~~~ 105 (158)
T PF01202_consen 73 VLKEENRELLKE-----NGLVIYLDADPEELAERLRAR 105 (158)
T ss_dssp GGSHHHHHHHHH-----HSEEEEEE--HHHHHHHHHHH
T ss_pred cCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCC
Confidence 566666666664 346999999999999999887
No 116
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.38 E-value=2.1e-12 Score=92.74 Aligned_cols=158 Identities=17% Similarity=0.237 Sum_probs=78.2
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCC--------HHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP--------SEVT 85 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 85 (196)
+...|.++++.|+|||||||++..+...+ +..+++.|++.... +.+..... .+.... ..+.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~----p~~~~~~~----~~~~~~~~~~~~~a~~~~ 82 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH----PDYDELLK----ADPDEASELTQKEASRLA 82 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS----TTHHHHHH----HHCCCTHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc----cchhhhhh----hhhhhhHHHHHHHHHHHH
Confidence 44678999999999999999999999987 57788886643221 11111111 001111 1122
Q ss_pred HHHHHHHHHhcCCCeEEEeccCCCHHHHH-HHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc--cC------CCCCCcHH
Q 029252 86 IKLLQKAMEESGNDKFLIDGFPRNEENRA-AFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQ------GREDDNVE 154 (196)
Q Consensus 86 ~~~~~~~l~~~~~~~~iidg~~~~~~~~~-~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R--~~------~r~~~~~~ 154 (196)
..++..++. .+..+|+|+......... .+..+ .++.+ .++++.+|++..+.|..+| .. | ...+.+
T Consensus 83 ~~~~~~a~~--~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R~~~~~~~~g~G-R~v~~~ 158 (199)
T PF06414_consen 83 EKLIEYAIE--NRYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQRYEEGLQAKGIG-RFVPEE 158 (199)
T ss_dssp HHHHHHHHH--CT--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHHHHHHC-C-TT------HC
T ss_pred HHHHHHHHH--cCCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHHHHccccccCCC-cCCCHH
Confidence 344444444 477899999776655554 33232 34443 4888999999999999999 22 3 333344
Q ss_pred HHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCC
Q 029252 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCS 187 (196)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 187 (196)
.+.............+...+ ....+.++|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~-~~d~i~v~d~~g 190 (199)
T PF06414_consen 159 KHDRAYANLPETLEALENEK-LFDRITVYDRDG 190 (199)
T ss_dssp CCHCCHHHHHHHHHHHHHCT---SEEEEE-TTS
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCC
Confidence 44444444444443433221 122355555443
No 117
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.38 E-value=4.5e-12 Score=91.00 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=29.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLR 57 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~d~~~ 57 (196)
+|.|.|++||||||+++.|+..+ +..+++.|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 48999999999999999999987 356788877653
No 118
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.37 E-value=1.6e-11 Score=89.33 Aligned_cols=170 Identities=13% Similarity=0.132 Sum_probs=85.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHHH---------cCCcc---hHHHHHHH---HcC-CC
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIK---------SGSEN---GTMIQNMI---KEG-KI 79 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~~~~~~~---------~~~~~---~~~~~~~~---~~~-~~ 79 (196)
+|.|.|++||||||+|+.|+..+. ..++++|+++..... .+.+. ...+...+ ..+ ..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 478999999999999999999873 356677766532210 00000 01111111 111 11
Q ss_pred CCHHHH----HHHHHHHHH-hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc------cCCC
Q 029252 80 VPSEVT----IKLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR------NQGR 148 (196)
Q Consensus 80 ~~~~~~----~~~~~~~l~-~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R------~~~r 148 (196)
+....+ .+....... ..+...+|+||.+........+.. .....|+.||+++|.+++.+|+..| ..+|
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~-l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r 159 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLF-VSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFS 159 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhh-HHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHh
Confidence 100000 000000000 112557889996433222111111 1224788999999999988888777 1122
Q ss_pred ---------CCCcHHHHHHHHHH-HHhcchhHHHHHHh----cC-cEEEEeCCCCceeEE
Q 029252 149 ---------EDDNVETIRKRFKV-FLESSLPVVQYYEA----KG-KVRKVIFCSPIFILV 193 (196)
Q Consensus 149 ---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~-~~~~id~~~~~e~v~ 193 (196)
...+.+....+... |.....+....|.. .. -++..+++.+++.+.
T Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~~~~~~~ 219 (220)
T cd02025 160 DPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADHSIEEVY 219 (220)
T ss_pred CchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCCcEEEEe
Confidence 12333445555554 66666665544432 12 345555566666553
No 119
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.37 E-value=2.1e-11 Score=98.19 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=69.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 102 (196)
.|+|.|+|||||||+++.|++++++.+++.|+++.+.. +....+.+. ..|.......-...+.+... ....+|
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~--g~~i~~i~~---~~Ge~~fr~~E~~~l~~l~~--~~~~Vi 74 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE--GRSVRRIFE---EDGEEYFRLKEKELLRELVE--RDNVVV 74 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc--CCCHHHHHH---HhhhHHHHHHHHHHHHHHhh--cCCEEE
Confidence 58999999999999999999999999999999886641 222222111 12222223333344443322 123333
Q ss_pred Eecc--CCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCC
Q 029252 103 IDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE 149 (196)
Q Consensus 103 idg~--~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~ 149 (196)
-.|. ......+..+.. ..+|||++|++++.+|+..+ +|+
T Consensus 75 s~Gggvv~~~~~r~~l~~------~~vI~L~as~e~l~~Rl~~~--~RP 115 (488)
T PRK13951 75 ATGGGVVIDPENRELLKK------EKTLFLYAPPEVLMERVTTE--NRP 115 (488)
T ss_pred ECCCccccChHHHHHHhc------CeEEEEECCHHHHHHHhccC--CCC
Confidence 2332 233344444432 25899999999999999876 555
No 120
>PRK07667 uridine kinase; Provisional
Probab=99.36 E-value=3.6e-12 Score=91.08 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHc----CCcch---------HHHH----HHHHcC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKS----GSENG---------TMIQ----NMIKEG 77 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~----~~~~~---------~~~~----~~~~~~ 77 (196)
...+|.|.|+|||||||+|+.|++.++ ..+++.|+++...... ...+. ..+. ..+..+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 348999999999999999999999873 4588888877654321 11110 0010 111222
Q ss_pred CCCCHHHHHHHHHHH----HHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 78 KIVPSEVTIKLLQKA----MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 78 ~~~~~~~~~~~~~~~----l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
..+....+.....+. ....+...+|+||...... .+. ..+|.+||+++|++++.+|+.+|
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~---~~~----~~~d~~v~V~~~~~~~~~R~~~r 159 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRK---EWR----DFFHYMVYLDCPRETRFLRESEE 159 (193)
T ss_pred CeEEEeeeccccccccccceecCCCCEEEEEehhhhhh---hHH----hhceEEEEEECCHHHHHHHHhcc
Confidence 111111111000110 1111246788898653221 122 24789999999999999999987
No 121
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.35 E-value=5.7e-12 Score=84.06 Aligned_cols=106 Identities=27% Similarity=0.405 Sum_probs=55.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC-cchHHHHHHHHcCCCCCHHHH---HHHHHHHHH-hcCC
Q 029252 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS-ENGTMIQNMIKEGKIVPSEVT---IKLLQKAME-ESGN 98 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~-~~~~ 98 (196)
|+|.|+|||||||+|+.|+++++ +.......... ..................... ...+..... ....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG 73 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence 78999999999999999999982 22222211111 110000000111122222222 222332221 2347
Q ss_pred CeEEEeccCCCHHHHHHHHhhcCCCCcEE-EEEEcCHHHHHHHHhhc
Q 029252 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFV-LFFDCSEEEMERRILNR 144 (196)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~-i~l~~~~~~~~~R~~~R 144 (196)
..+|+|+....... ....... |+|+||++++.+|+..|
T Consensus 74 ~~~iid~~~~~~~~--------~~~~~~~~i~L~~~~e~~~~R~~~R 112 (129)
T PF13238_consen 74 RNIIIDGILSNLEL--------ERLFDIKFIFLDCSPEELRKRLKKR 112 (129)
T ss_dssp SCEEEEESSEEECE--------TTEEEESSEEEE--HHHHHHHHHCT
T ss_pred CcEEEecccchhcc--------cccceeeEEEEECCHHHHHHHHHhC
Confidence 88899986432211 0011122 99999999999999998
No 122
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.35 E-value=1.1e-12 Score=93.85 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=60.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC---C------cEecHHHHHHHHHHc-----C-CcchHHHHHHHHcCCCCCHHHHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFG---Y------THLSAGDLLRAEIKS-----G-SENGTMIQNMIKEGKIVPSEVTIK 87 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~---~------~~~~~~d~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (196)
+|.|.|+|||||||+|+.|+..++ . .+++.|+........ . ..... ........+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~p~a~d~~~l~~ 74 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNF------DHPDAFDFDLLKE 74 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSST------TSGGGBSHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCC------CCccccCHHHHHH
Confidence 589999999999999999999996 2 244555443221000 0 00000 0000111122333
Q ss_pred HHHHHHHh----------------------cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 88 LLQKAMEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 88 ~~~~~l~~----------------------~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.+...... .+...+|+||.+...... +.. ..|+.||++++.++++.|...|
T Consensus 75 ~l~~L~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~--l~~----l~D~~ifld~~~~~~l~Rri~R 147 (194)
T PF00485_consen 75 DLKALKNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE--LRD----LFDLKIFLDADEDLRLERRIQR 147 (194)
T ss_dssp HHHHHHTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC--HGG----G-SEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHhCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee--ecc----cceeEEEecccHHHHHHHHhhh
Confidence 33322110 124567899965432211 222 4689999999999999999988
No 123
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.35 E-value=8.2e-12 Score=88.29 Aligned_cols=133 Identities=18% Similarity=0.232 Sum_probs=79.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC---Cc----chHHHHHHHHcCCCCCH--------HHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG---SE----NGTMIQNMIKEGKIVPS--------EVTI 86 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~--------~~~~ 86 (196)
.+|+|.|++||||||+++.|++.++..++......++...+. .. ....+...+..+.++.. ....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 579999999999999999999877654444333333221110 00 01233333333332211 1113
Q ss_pred HHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL 164 (196)
Q Consensus 87 ~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~ 164 (196)
..+...+. .+..+|+|.. ......+.+ ....+..++++..+.+.+.+|+..| ...+.+.+..|+....
T Consensus 82 ~~i~~~~~--~g~~vi~d~~---~~~~~~~~~-~~~~~~~i~~~~~~~e~~~~Rl~~r----~~~~~~~i~~rl~~~~ 149 (180)
T TIGR03263 82 SPVEEALA--AGKDVLLEID---VQGARQVKK-KFPDAVSIFILPPSLEELERRLRKR----GTDSEEVIERRLAKAK 149 (180)
T ss_pred HHHHHHHH--CCCeEEEECC---HHHHHHHHH-hCCCcEEEEEECCCHHHHHHHHHHc----CCCCHHHHHHHHHHHH
Confidence 45555555 4778888853 334444444 3444555666678889999999988 3446677888887665
No 124
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.35 E-value=5.1e-12 Score=89.68 Aligned_cols=133 Identities=23% Similarity=0.347 Sum_probs=83.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHc---CCcc----hHHHHHHHHcCCCCCHH--------H
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKS---GSEN----GTMIQNMIKEGKIVPSE--------V 84 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~--------~ 84 (196)
++.|+|.|||||||+|+++.|.+.+. ...+......|....+ +..+ .+.+...++.|.++.+. +
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 46799999999999999999998863 1222221222222111 1111 25666676666654432 2
Q ss_pred HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEE-cCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029252 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFKVF 163 (196)
Q Consensus 85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~ 163 (196)
....+...+. .++.+|+|..+....+ +.. ....+ .+||+. .+.+++.+|+..| .+++.+.+.+|+...
T Consensus 82 ~~~~i~~~~~--~~~~~ild~~~~~~~~---l~~-~~~~~-~vIfi~~~s~~~l~~rl~~R----~~~~~~~i~~rl~~a 150 (184)
T smart00072 82 SKETIRQVAE--QGKHCLLDIDPQGVKQ---LRK-AQLYP-IVIFIAPPSSEELERRLRGR----GTETAERIQKRLAAA 150 (184)
T ss_pred CHHHHHHHHH--cCCeEEEEECHHHHHH---HHH-hCCCc-EEEEEeCcCHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence 2446666665 4888999976544444 333 33333 688887 5567799999977 455677888888765
Q ss_pred H
Q 029252 164 L 164 (196)
Q Consensus 164 ~ 164 (196)
.
T Consensus 151 ~ 151 (184)
T smart00072 151 Q 151 (184)
T ss_pred H
Confidence 4
No 125
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.35 E-value=4.1e-11 Score=84.47 Aligned_cols=112 Identities=19% Similarity=0.265 Sum_probs=64.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (196)
.++.+|++.|+|||||||+++.|++++. ..+++.|. +++.+.... +.. ... .. .......+...+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~-~r~~~~~~~-~~~-~~~-~~------~~~~~~~l~~~l 74 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LREILGHYG-YDK-QSR-IE------MALKRAKLAKFL 74 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH-HHhhcCCCC-CCH-HHH-HH------HHHHHHHHHHHH
Confidence 3567999999999999999999999885 45555544 444332211 000 000 00 000112222223
Q ss_pred HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (196)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 143 (196)
. ..+..||+|+.... ........ ....+..+|||++|++++.+|...
T Consensus 75 ~-~~g~~VI~~~~~~~-~~~~~~~~-~~~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 75 A-DQGMIVIVTTISMF-DEIYAYNR-KHLPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred H-hCCCEEEEEeCCcH-HHHHHHHH-hhcCCeEEEEEeCCHHHHHHhchh
Confidence 2 24678889875432 22222222 223345799999999999999753
No 126
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.33 E-value=2e-11 Score=83.24 Aligned_cols=112 Identities=20% Similarity=0.198 Sum_probs=63.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHH-HHHHHcCCCCCHHHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMI-QNMIKEGKIVPSEVTIKLLQKAM 93 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 93 (196)
++.+|+|+|.|||||||+|+.|.++|. ..+++. |.++..+..+-.+...- ...+. ....+...+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~r---------r~~~~A~ll 70 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENIR---------RIAEVAKLL 70 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHHH---------HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHHH---------HHHHHHHHH
Confidence 467899999999999999999999882 345555 54554433322221111 11110 023333334
Q ss_pred HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHh
Q 029252 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (196)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~ 142 (196)
.+ .+..+|+.......+.++...+.......+.||++||.++|.+|-.
T Consensus 71 ~~-~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~ 118 (156)
T PF01583_consen 71 AD-QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDP 118 (156)
T ss_dssp HH-TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTT
T ss_pred Hh-CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCc
Confidence 32 4777888865555555555554222124569999999999999943
No 127
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.31 E-value=1.8e-10 Score=86.41 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=73.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC------cchHHHHHHHH--cCCCCCHH-------
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS------ENGTMIQNMIK--EGKIVPSE------- 83 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~------- 83 (196)
..|.+|+|.|++||||||+|..|+++++...+...|.+++.++... .........+. ....-+++
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~ 169 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE 169 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence 4678999999999999999999999999874433566765444311 00000001110 00000111
Q ss_pred ----H----HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEE-cCHHHHHHHHhhc
Q 029252 84 ----V----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNR 144 (196)
Q Consensus 84 ----~----~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~R~~~R 144 (196)
. ....+...+. ++..+|++|.+..+.....+.. ..... ..++|. .+++...+|+..|
T Consensus 170 ~~~~~v~~gi~~~I~~~~~--~g~s~IiEGvhl~P~~i~~~~~-~~~~~-i~~~l~i~~ee~h~~RF~~R 235 (301)
T PRK04220 170 RHVEPVSVGVEAVIERALK--EGISVIIEGVHIVPGFIKEKYL-ENPNV-FMFVLTLSDEEAHKARFYAR 235 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH--hCCcEEEecCCCCHHHHHHhhh-cCCCE-EEEEEEECCHHHHHHHHHHH
Confidence 1 1334444444 4889999998888877654332 22222 344444 6679999999999
No 128
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.31 E-value=9.1e-11 Score=84.68 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=77.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCC-----HH---H
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVP-----SE---V 84 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~-----~~---~ 84 (196)
++.+|+|.|+|||||||+++.|+..++...+......+....+ +.. ....+...+..+.+.. .. .
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 4578999999999999999999998763333332222221110 000 1123333333222211 01 1
Q ss_pred HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL 164 (196)
Q Consensus 85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~ 164 (196)
....+...+. .+..+|+|..+ .....+.+ ....+..++++.++.+++.+|+..| ..++.+.+..|+..+.
T Consensus 84 ~~~~i~~~l~--~g~~vi~dl~~---~g~~~l~~-~~~~~~~I~i~~~s~~~l~~Rl~~R----~~~~~~~i~~rl~~~~ 153 (205)
T PRK00300 84 PRSPVEEALA--AGKDVLLEIDW---QGARQVKK-KMPDAVSIFILPPSLEELERRLRGR----GTDSEEVIARRLAKAR 153 (205)
T ss_pred cHHHHHHHHH--cCCeEEEeCCH---HHHHHHHH-hCCCcEEEEEECcCHHHHHHHHHhc----CCCCHHHHHHHHHHHH
Confidence 1344555554 47778888533 33333443 3333334555577889999999988 3356778888887776
Q ss_pred hc
Q 029252 165 ES 166 (196)
Q Consensus 165 ~~ 166 (196)
..
T Consensus 154 ~~ 155 (205)
T PRK00300 154 EE 155 (205)
T ss_pred HH
Confidence 43
No 129
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.30 E-value=7.7e-11 Score=86.04 Aligned_cols=38 Identities=34% Similarity=0.606 Sum_probs=35.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA 58 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~ 58 (196)
+.+|.|.|++||||||+++.|++++++.+++.+++++.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 57899999999999999999999999999999998776
No 130
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.30 E-value=5.1e-11 Score=88.94 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=66.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (196)
++|+|+|.|||||||+|+.|++.+. ..+++.+++. +..+. +....... .-...+...+.+.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~-y~~~~~Ek------~~R~~l~s~v~r~ls-- 69 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRND-YADSKKEK------EARGSLKSAVERALS-- 69 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S--GGGHH------HHHHHHHHHHHHHHT--
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhh-hhchhhhH------HHHHHHHHHHHHhhc--
Confidence 4799999999999999999999762 3445543433 11111 11000000 001123455566554
Q ss_pred CCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCC-CCcHHHHHHHHHHHH
Q 029252 97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE-DDNVETIRKRFKVFL 164 (196)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~-~~~~~~~~~~~~~~~ 164 (196)
....||+|+.....-.+..+..+ .......+||+++|.+.|.+|..+| +.. ..+.+.+..-..+|.
T Consensus 70 ~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R--~~~~~~~~e~i~~m~~RfE 138 (270)
T PF08433_consen 70 KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKR--PEPERYPEETIDDMIQRFE 138 (270)
T ss_dssp T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHT--T-S--S-HHHHHHHHHH--
T ss_pred cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhcc--CCCCCCCHHHHHHHHHHhc
Confidence 36889999865555444443332 4444557999999999999999999 322 244455555444444
No 131
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.29 E-value=1.3e-10 Score=79.64 Aligned_cols=119 Identities=20% Similarity=0.178 Sum_probs=69.2
Q ss_pred cccCCCCCcEEEEEcCCCCChHHHHHHHHHHh---C-CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHH
Q 029252 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---G-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL 89 (196)
Q Consensus 14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~---~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (196)
..+...++.+|+++|.|||||||+|..|.++| | ..++-.+|-+|..+..+-.+...-+... -.-...+
T Consensus 16 ~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~en--------iRRvaev 87 (197)
T COG0529 16 EALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIEN--------IRRVAEV 87 (197)
T ss_pred HHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHH--------HHHHHHH
Confidence 44556678899999999999999999999988 3 3444455667766554333221111100 0013334
Q ss_pred HHHHHhcCCCeEEEeccCCCH-HHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHh
Q 029252 90 QKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (196)
Q Consensus 90 ~~~l~~~~~~~~iidg~~~~~-~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~ 142 (196)
...+. +...++|-.+-... +.++...++......+-||+++|.++|.+|--
T Consensus 88 Akll~--daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDp 139 (197)
T COG0529 88 AKLLA--DAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDP 139 (197)
T ss_pred HHHHH--HCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCc
Confidence 44443 23334444433332 33333333233334579999999999998843
No 132
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.29 E-value=1.5e-10 Score=79.27 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=64.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHH--HHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--LQKAMEE 95 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ 95 (196)
+++|.|.|||||||+++.|++.+ + ..+++. |.++..+.....+...- .......+ ....+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~~----------~~~~~~~~~~~a~~l~- 68 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRED----------REENIRRIAEVAKLLA- 68 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcch----------HHHHHHHHHHHHHHHH-
Confidence 47899999999999999999988 4 344554 44444322211111000 00111111 111222
Q ss_pred cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (196)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 143 (196)
..+..+|+|........+..+.++....+..++|+++|.+++.+|...
T Consensus 69 ~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 69 DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 247788999765555666655553223445699999999999999543
No 133
>PRK07429 phosphoribulokinase; Provisional
Probab=99.29 E-value=1e-10 Score=89.60 Aligned_cols=141 Identities=15% Similarity=0.192 Sum_probs=75.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHH---HHH--cCCcc---h---HHHH---HHHHcCCCC
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRA---EIK--SGSEN---G---TMIQ---NMIKEGKIV 80 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~---~~~--~~~~~---~---~~~~---~~~~~~~~~ 80 (196)
..++.+|.|.|++||||||+++.|++.++ ..++..|++... ... +.... . ..+. ..+..+..+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I 84 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI 84 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence 34678999999999999999999999887 456777776421 000 00000 0 0000 111222211
Q ss_pred CHHHHHHHH---HHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHH
Q 029252 81 PSEVTIKLL---QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR 157 (196)
Q Consensus 81 ~~~~~~~~~---~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~ 157 (196)
....+.... .......+...+|+||.....+. .+. ..+|+.||+++|.++..+|..+|...+...+.+.+.
T Consensus 85 ~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~--~lr----~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~ 158 (327)
T PRK07429 85 LKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDE--RVR----ELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVL 158 (327)
T ss_pred ecceeecCCCCcCCcEecCCCcEEEEechhhcCcH--hHH----hhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 111000000 00000012457889995422111 111 247899999999999998888772222233556666
Q ss_pred HHHHHHH
Q 029252 158 KRFKVFL 164 (196)
Q Consensus 158 ~~~~~~~ 164 (196)
.++....
T Consensus 159 ~~i~~r~ 165 (327)
T PRK07429 159 AEIEARE 165 (327)
T ss_pred HHHHHhC
Confidence 6665443
No 134
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.29 E-value=7.1e-10 Score=87.50 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=73.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC--c----ch-HHHHH--HHHcCC------CCCHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS--E----NG-TMIQN--MIKEGK------IVPSE 83 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~--~----~~-~~~~~--~~~~~~------~~~~~ 83 (196)
.+|.+|++.|+|||||||++..|+.++++..+...|.+++.+..-- . .. ..+.. .+..+. .....
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~ 332 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE 332 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence 4589999999999999999999999999875544466666444411 0 00 00111 110010 01101
Q ss_pred -----------H---HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 84 -----------V---TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 84 -----------~---~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
+ ...++.+.+. ++..+|+||.+..+........ .......+.+.--++++..+|+..|
T Consensus 333 vi~Gf~~q~~~V~~gi~~vI~r~l~--eG~SvIIEGVHl~P~~i~~~~~-~~~~~i~flv~isdeeeH~~Rf~~R 404 (475)
T PRK12337 333 VLRGFRDQVQQVAVGLGAIQERSAQ--EGTSLVLEGVHLVPGYLRHPYQ-AGALVVPMLVTLPDEALHRRRFELR 404 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--cCCeEEEECCCCCHHHHHHHHh-cCCceEEEEEEECCHHHHHHHHHHH
Confidence 1 2444555555 5999999998777766553222 2222222344455778899999999
No 135
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.28 E-value=1.6e-10 Score=79.50 Aligned_cols=162 Identities=18% Similarity=0.264 Sum_probs=97.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH-----------HH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------IK 87 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 87 (196)
.+..+|++.|...|||||.+..|.+.+.-... . ......-......++.+..++.+....++..+ .+
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~-~-~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLIPGLD-P-AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHHhccC-h-HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 35678999999999999999999998842211 1 11222212245667777777776666655443 34
Q ss_pred HHHHHHHhcCCCeEEEeccCCC-HH----------HHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHH
Q 029252 88 LLQKAMEESGNDKFLIDGFPRN-EE----------NRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI 156 (196)
Q Consensus 88 ~~~~~l~~~~~~~~iidg~~~~-~~----------~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~ 156 (196)
++.+.+. .+..+|+|.|... .. ....... -...||.++||+++++.+.+| .++ |........+
T Consensus 81 ~i~e~l~--kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~-gL~KPDlvlfL~v~p~~~a~r-ggf--G~Erye~v~f 154 (208)
T KOG3327|consen 81 LIKEKLA--KGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDV-GLPKPDLVLFLDVSPEDAARR-GGF--GEERYETVAF 154 (208)
T ss_pred HHHHHHh--cCCeEEEecceecchhhhhhcCCCcchhhCCcc-CCCCCCeEEEEeCCHHHHHHh-cCc--chhHHHHHHH
Confidence 4555454 3777999975432 11 1111222 567799999999999995444 444 3222223344
Q ss_pred HHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 157 RKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+++...+.. .+.. .....+.++|++.+.|+|.
T Consensus 155 qekv~~~~q---~l~r--~e~~~~~~vDAs~sve~V~ 186 (208)
T KOG3327|consen 155 QEKVLVFFQ---KLLR--KEDLNWHVVDASKSVEKVH 186 (208)
T ss_pred HHHHHHHHH---HHHh--ccCCCeEEEecCccHHHHH
Confidence 444333332 2211 1334799999999988764
No 136
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.28 E-value=1.3e-10 Score=84.02 Aligned_cols=153 Identities=18% Similarity=0.276 Sum_probs=78.3
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHH---HHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE---VTIKLL 89 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 89 (196)
...+.+|+|+|.||.|||++|++|++.|+ ..+++.+++-|+......... .+......+...... ...+-+
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~-ff~p~n~~~~~~R~~~a~~~l~dl 87 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAE-FFDPDNEEAKKLREQIAKEALEDL 87 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GG-GGSTT-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccc-cCCCCChHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999998774 468999998888755411100 000000000000001 112223
Q ss_pred HHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEE--cCHHHHHHHHhhc-cCC-------CCCCcHHHHHHH
Q 029252 90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD--CSEEEMERRILNR-NQG-------REDDNVETIRKR 159 (196)
Q Consensus 90 ~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~--~~~~~~~~R~~~R-~~~-------r~~~~~~~~~~~ 159 (196)
...+.+..++..|+|+...+.+.+..+.+........++|++ |+++.+.++...+ ... .++...+.+.+|
T Consensus 88 ~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~R 167 (222)
T PF01591_consen 88 IEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKR 167 (222)
T ss_dssp HHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence 334454568899999999999988877664111113456654 4554444444443 111 122334667789
Q ss_pred HHHHHhcchhHH
Q 029252 160 FKVFLESSLPVV 171 (196)
Q Consensus 160 ~~~~~~~~~~~~ 171 (196)
++.|...+.|+-
T Consensus 168 I~~Ye~~YEpl~ 179 (222)
T PF01591_consen 168 IEHYEKVYEPLD 179 (222)
T ss_dssp HHHHHTT-----
T ss_pred HHhhcccccccc
Confidence 999998888884
No 137
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.28 E-value=1.4e-10 Score=80.82 Aligned_cols=113 Identities=15% Similarity=0.240 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcC----Ccc---------hHHHHHHHHcCCCCCHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSG----SEN---------GTMIQNMIKEGKIVPSEVTI 86 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~~----~~~---------~~~~~~~~~~~~~~~~~~~~ 86 (196)
.+|+|.|+|.|||||+|+.|.+.+. +.+++.|++........ ..+ +..+...+ ..+.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~ 73 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLY--------AAMH 73 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHH--------HHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHH--------HHHH
Confidence 6899999999999999999999996 56888887776532221 000 01111100 1112
Q ss_pred HHHHHHHHhcCCCeEEEeccCCCHHH-HHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 87 KLLQKAMEESGNDKFLIDGFPRNEEN-RAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 87 ~~~~~~l~~~~~~~~iidg~~~~~~~-~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
..+..... .+..+|+|........ .+.+.++....+.+.|-+.||.+++.+|-..|
T Consensus 74 ~~iaa~a~--aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~R 130 (174)
T PF07931_consen 74 AAIAAMAR--AGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERAR 130 (174)
T ss_dssp HHHHHHHH--TT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhc
Confidence 33333222 4888999986555543 45554434455667999999999999999999
No 138
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.27 E-value=1.4e-10 Score=85.15 Aligned_cols=136 Identities=13% Similarity=0.134 Sum_probs=71.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCC-----cE-ecHHHHHHHHH--HcCCcchHHHHHHHHcCCCCCHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----TH-LSAGDLLRAEI--KSGSENGTMIQNMIKEGKIVPSEVTIKLL 89 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~-----~~-~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (196)
..++.++.|.|++||||||+++.|+..+.. .+ +..|++..... ...... .................+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~-----~~~~~~~~~d~~~~~~~l 104 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLR-----PRKGAPETFDVAGLAALL 104 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccc-----cccCCCCCCCHHHHHHHH
Confidence 356789999999999999999999988742 22 55555332110 000000 000000001111111111
Q ss_pred HHHHHh------------------------cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc
Q 029252 90 QKAMEE------------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (196)
Q Consensus 90 ~~~l~~------------------------~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 145 (196)
...... .....+|+||.+..... ..+.. ....+|.++|+++|.+++.+|+..|.
T Consensus 105 ~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~-~~~~~-l~~~~D~vi~v~~~~~~~~~R~~~R~ 182 (229)
T PRK09270 105 RRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDE-EPWRR-LAGLFDFTIFLDAPAEVLRERLVARK 182 (229)
T ss_pred HHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeecc-ccHHH-HHhhCCEEEEEECCHHHHHHHHHHHH
Confidence 111100 02456778886543321 11121 22357899999999999999999981
Q ss_pred CCCCCCcHHHHHHHHH
Q 029252 146 QGREDDNVETIRKRFK 161 (196)
Q Consensus 146 ~~r~~~~~~~~~~~~~ 161 (196)
. ....+.+.+.+++.
T Consensus 183 ~-~~g~s~~~~~~~~~ 197 (229)
T PRK09270 183 L-AGGLSPEAAEAFVL 197 (229)
T ss_pred H-hcCCCHHHHHHHHH
Confidence 1 12234566666654
No 139
>PRK15453 phosphoribulokinase; Provisional
Probab=99.26 E-value=3.4e-11 Score=89.22 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR 57 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~ 57 (196)
.++.+|+|+|.|||||||+++.|++.++ ..+++.|++.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 3568999999999999999999998774 45677777664
No 140
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.25 E-value=4.5e-10 Score=79.71 Aligned_cols=113 Identities=16% Similarity=0.176 Sum_probs=68.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchH-HHHHHHHcCCCCCHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQK 91 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (196)
..++.+++|.|+|||||||+++.|+..+. ..+++.|+ +++.+..+..+.. .....+ ..... +..
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~-~r~~l~~~~~~~~~~~~~~~--------~~~~~-~~~ 84 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN-VRHGLNKDLGFSEEDRKENI--------RRIGE-VAK 84 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH-HHhhhccccCCCHHHHHHHH--------HHHHH-HHH
Confidence 35678999999999999999999998872 34566544 4433222111110 000000 00011 112
Q ss_pred HHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH
Q 029252 92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (196)
Q Consensus 92 ~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~ 141 (196)
.+ ...+..+|+|........+..+.......+..++||++|.+++.+|.
T Consensus 85 ~~-~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~ 133 (184)
T TIGR00455 85 LF-VRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRD 133 (184)
T ss_pred HH-HcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhC
Confidence 22 22488899998655566666666532222456899999999999993
No 141
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.24 E-value=5.6e-10 Score=75.14 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=97.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
++.+.++.|+.||||||+...+...+ +..+++.|.+.... ....+....++.. ......+...+. .
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i-~p~~p~~~~i~A~---------r~ai~~i~~~I~--~ 68 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI-SPDNPTSAAIQAA---------RVAIDRIARLID--L 68 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc-CCCCchHHHHHHH---------HHHHHHHHHHHH--c
Confidence 46788999999999999987766555 35677886665554 3322221111110 111333443443 3
Q ss_pred CCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHhcchhHHHHH
Q 029252 98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVVQYY 174 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (196)
+.++..+.........+.+... .++-..+.+++--+.+...+|++.| ..|.++.+++.++.|+.+..+ ++++|
T Consensus 69 ~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle----~l~~~ 144 (187)
T COG4185 69 GRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLE----LLAQA 144 (187)
T ss_pred CCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH----HHHHH
Confidence 7778877655444444444432 4444444444555678999999999 889999999999998776554 33444
Q ss_pred Hhc-CcEEEEeCCCCceeEEe
Q 029252 175 EAK-GKVRKVIFCSPIFILVI 194 (196)
Q Consensus 175 ~~~-~~~~~id~~~~~e~v~~ 194 (196)
-.. ....+.|++...-.++.
T Consensus 145 l~l~dr~~IydNS~~~~~lv~ 165 (187)
T COG4185 145 LTLADRATIYDNSRLAPRLVA 165 (187)
T ss_pred HhhcceeEEecCCCCCceEEE
Confidence 332 24667777765544443
No 142
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.24 E-value=2.9e-10 Score=95.18 Aligned_cols=164 Identities=20% Similarity=0.240 Sum_probs=90.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----HHcCCcch--HHHHHHHHc-------------CCCCC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENG--TMIQNMIKE-------------GKIVP 81 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~----~~~~~~~~--~~~~~~~~~-------------~~~~~ 81 (196)
.+.|.|.||+||||||+++.|++++++.+++.+.++|.. ...+-... ..+...+.. +..+.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVT 521 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEch
Confidence 468999999999999999999999999999999999885 22222111 111111111 00010
Q ss_pred H-----------------HHHHHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252 82 S-----------------EVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (196)
Q Consensus 82 ~-----------------~~~~~~~~~~l~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 143 (196)
. ..+...+.....+. ...++|+||--.. . .-.+..++-|||++++++..+|..+
T Consensus 522 ~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRdig--t------vv~p~a~~kifl~a~~~~Ra~Rr~~ 593 (661)
T PRK11860 522 DAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRDMG--T------VIFPDAALKVFLTASAEARAERRYK 593 (661)
T ss_pred hhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCCCc--c------EECCCCCeEEEEECChhHHHHHHHH
Confidence 0 01111111111111 1446888872111 0 0233478899999999999999877
Q ss_pred c--cCCCCCCcHHHHHHHHHH--HHhcchhHHHHHHhcCcEEEEeCC-CCceeEEe
Q 029252 144 R--NQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGKVRKVIFC-SPIFILVI 194 (196)
Q Consensus 144 R--~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~~-~~~e~v~~ 194 (196)
. ..+. ..+.+.+.+.+.. +.+..+. ...+....+-++||++ .++++++.
T Consensus 594 ~~~~~~~-~~~~~~~~~~~~~Rd~~d~~R~-~~pl~~~~da~~idts~~~~~~v~~ 647 (661)
T PRK11860 594 QLISKGI-SANIADLLADLEARDARDTQRS-VAPLKPAQDALLLDNSDLTIEQAVA 647 (661)
T ss_pred HHHhCCC-CCCHHHHHHHHHHHhHHhhcCC-CCCCccCCCEEEEECCCCCHHHHHH
Confidence 5 2233 2333333333311 1111111 1222444467788887 48877653
No 143
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.24 E-value=2.4e-11 Score=85.73 Aligned_cols=110 Identities=18% Similarity=0.184 Sum_probs=64.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHH----
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM---- 93 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---- 93 (196)
+|+|.|+|||||||+|+.|++.+ +..+++.|++++.........+ .......+..+.+.+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g-----~~d~~~~~d~~~l~~~l~~l~~~~~ 75 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDG-----NYDFESILDLDLLNKNLHDLLNGKE 75 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCC-----CCCCCccccHHHHHHHHHHHHCCCe
Confidence 48999999999999999999987 3578899998874300000000 000000001112222222111
Q ss_pred -------------------HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHH-HHHHHhhc
Q 029252 94 -------------------EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE-MERRILNR 144 (196)
Q Consensus 94 -------------------~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~-~~~R~~~R 144 (196)
...+...+|+||.+.... .+.+ ..|+.||++++.+. ++.|...|
T Consensus 76 ~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~---~l~~----~~d~~I~vd~~~~~~rl~rri~R 139 (179)
T cd02028 76 VELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE---RLRS----LLDIRVAVSGGVHLNRLLRRVVR 139 (179)
T ss_pred eecccceeECCccCCCceEEeCCCCEEEEecHHhcCH---hHHh----hcCEEEEEeCCccHHHHHHHHHH
Confidence 111246788999655432 2222 26899999999998 77777766
No 144
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.23 E-value=6.2e-10 Score=78.35 Aligned_cols=109 Identities=19% Similarity=0.246 Sum_probs=63.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchH-HHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKAM 93 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 93 (196)
++.+|+|.|+|||||||+++.|+..+. ..+++.|.+ +.....+..+.. ....... . ...+...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r~~~~~--------~-~~~~a~~~ 72 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDRDTNIR--------R-IGFVANLL 72 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhHHHHHH--------H-HHHHHHHH
Confidence 457999999999999999999999873 455676554 333222111110 0000000 0 11122222
Q ss_pred HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH
Q 029252 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (196)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~ 141 (196)
. ..+..+++++..........+.. .. ....++||++|.+++.+|.
T Consensus 73 ~-~~g~~vi~~~~~~~~~~~~~l~~-~~-~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 73 T-RHGVIVLVSAISPYRETREEVRA-NI-GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred H-hCCCEEEEecCCCCHHHHHHHHh-hc-CCeEEEEEcCCHHHHHHhC
Confidence 2 23667778865333444444444 22 2335999999999999994
No 145
>PHA03132 thymidine kinase; Provisional
Probab=99.21 E-value=8.9e-10 Score=89.37 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~ 48 (196)
..+|+|.|+.||||||+++.|++.++..
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg~~ 284 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILGDN 284 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 5789999999999999999999998433
No 146
>PRK05439 pantothenate kinase; Provisional
Probab=99.21 E-value=3.5e-10 Score=85.69 Aligned_cols=126 Identities=16% Similarity=0.236 Sum_probs=67.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHHH---------cCCcch---HHHHHH---HH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIK---------SGSENG---TMIQNM---IK 75 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~~~~~~~---------~~~~~~---~~~~~~---~~ 75 (196)
...+.+|.|.|+|||||||+|+.|++.++ ..++++|+++...-. .+.+.. ..+... +.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk 162 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVK 162 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHH
Confidence 45678999999999999999999998663 356778877643211 011100 011111 11
Q ss_pred cCCC-CCHHHH----HHHHHHH-HHhcCCCeEEEeccCCC-HHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 76 EGKI-VPSEVT----IKLLQKA-MEESGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 76 ~~~~-~~~~~~----~~~~~~~-l~~~~~~~~iidg~~~~-~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.|.. +....+ .+..... ....+...+|+||.... ......+.. -....|+.||+++|.+++.+|+.+|
T Consensus 163 ~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~-l~d~~D~~IfVda~~~~~~~w~i~R 237 (311)
T PRK05439 163 SGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLF-VSDFFDFSIYVDADEDLIEKWYIER 237 (311)
T ss_pred cCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchh-hHHhCCEEEEEECCHHHHHHHHHHH
Confidence 1211 100000 0000000 00012456788995432 221101111 1234789999999999999988887
No 147
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.20 E-value=1.8e-10 Score=86.40 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=68.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHH---HH--HcCC---cc----hH--HHHHHHHcCCCCCHHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRA---EI--KSGS---EN----GT--MIQNMIKEGKIVPSEVT 85 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~---~~--~~~~---~~----~~--~~~~~~~~~~~~~~~~~ 85 (196)
+|.|.|++||||||+++.|+..++ ..++..|++... .. .+.. +. .. ..-..+..+..+....+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 478999999999999999998774 456777665421 00 0000 00 00 00111222222211111
Q ss_pred HHHHHHHH---HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252 86 IKLLQKAM---EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV 162 (196)
Q Consensus 86 ~~~~~~~l---~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (196)
........ ...+...+|+||.....+ ..+ ...+|+.||++++.++.++|..+|...+...+.+.+.+++..
T Consensus 81 ~~~~~~~~~~~~i~~~~ivIvEG~~~l~~--~~l----~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~ 154 (273)
T cd02026 81 NHVTGLIDPPELIKPTKIVVIEGLHPLYD--ERV----RELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA 154 (273)
T ss_pred cccCCCcCCcEEcCCCCEEEEeeehhhCc--hhh----hhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 00000000 001246788898542111 111 224789999999999998887777211122345556665543
No 148
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.19 E-value=7.2e-10 Score=85.01 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=75.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHc---CCcch---HHHHH--------H---HHcCCC
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKS---GSENG---TMIQN--------M---IKEGKI 79 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~------~~~~~~~d~~~~~~~~---~~~~~---~~~~~--------~---~~~~~~ 79 (196)
+.+++|+|||||||+++.|++.+. ..+++.||++...... +.... +.+++ . +..|..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~ 80 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE 80 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 368999999999999999998775 3488899888321111 00000 11111 1 112222
Q ss_pred CCH------------------------------HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEE
Q 029252 80 VPS------------------------------EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFV 127 (196)
Q Consensus 80 ~~~------------------------------~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~ 127 (196)
... .....++...+. ....+|+|+.+.....+..+..+ .......+
T Consensus 81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~Ls--rpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~ 158 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVS--RPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQ 158 (340)
T ss_pred ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHh--CCCCceecCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 111 011111111111 24468899866666665555443 33334479
Q ss_pred EEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029252 128 LFFDCSEEEMERRILNRNQGREDDNVETIRKRFK 161 (196)
Q Consensus 128 i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~ 161 (196)
||+++|.+++.+|..+| +. ..+.+.+.....
T Consensus 159 V~ld~ple~~l~RN~~R--~~-~v~devie~m~~ 189 (340)
T TIGR03575 159 LFLDCPVESCLLRNKQR--PV-PLPDETIQLMGR 189 (340)
T ss_pred EEEeCCHHHHHHHHhcC--CC-CCCHHHHHHHHH
Confidence 99999999999999998 32 334444444333
No 149
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.19 E-value=3.5e-10 Score=76.28 Aligned_cols=155 Identities=16% Similarity=0.201 Sum_probs=91.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcc----hHHHHHHHHcCCC-CCHHHH------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSEN----GTMIQNMIKEGKI-VPSEVT------ 85 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~------ 85 (196)
+..+|++.||||+||-|+......++.. .+|.-.-+.|..-.+++.. ...|...-..|.+ +.|...
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 5789999999999999999999888842 2222112222211111110 1122222222211 122111
Q ss_pred HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029252 86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE 165 (196)
Q Consensus 86 ~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~ 165 (196)
-..+...+. .+..+|+.|.-..+.+.. ..+.--.++++.++++++.+|+.+| || ++.+++..|+.+-..
T Consensus 84 p~eId~wl~--~G~vvl~NgSRa~Lp~ar-----rry~~Llvv~ita~p~VLaqRL~~R--GR--Es~eeI~aRL~R~a~ 152 (192)
T COG3709 84 PAEIDLWLA--AGDVVLVNGSRAVLPQAR-----RRYPQLLVVCITASPEVLAQRLAER--GR--ESREEILARLARAAR 152 (192)
T ss_pred chhHHHHHh--CCCEEEEeccHhhhHHHH-----HhhhcceeEEEecCHHHHHHHHHHh--cc--CCHHHHHHHHHhhcc
Confidence 233444454 488888888644333322 2223346999999999999999999 55 567888888765432
Q ss_pred cchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 166 SSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 166 ~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
.. ...+++..||++.+++..
T Consensus 153 ~~-------~~~~dv~~idNsG~l~~a 172 (192)
T COG3709 153 YT-------AGPGDVTTIDNSGELEDA 172 (192)
T ss_pred cc-------cCCCCeEEEcCCCcHHHH
Confidence 11 235589999999888753
No 150
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.18 E-value=2.1e-09 Score=80.95 Aligned_cols=97 Identities=24% Similarity=0.304 Sum_probs=55.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SG 97 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~ 97 (196)
+..+|+|+|++||||||+++.|. ..|+.+++. .+-.++.+++...... ..
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~~~~~~~~~ 56 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVELLAQSGGIR 56 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHHHHhcCCCC
Confidence 34689999999999999999995 557655522 1111112222221111 12
Q ss_pred CCeEEEeccCCCH--HHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 98 NDKFLIDGFPRNE--ENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 98 ~~~~iidg~~~~~--~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.-.+++|-..... +....+..+ .......+|||+++++++.+|+.++
T Consensus 57 ~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~ 106 (288)
T PRK05416 57 KVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSET 106 (288)
T ss_pred CeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhc
Confidence 3356677532211 122222222 1222335899999999999999754
No 151
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.16 E-value=1.2e-09 Score=78.50 Aligned_cols=112 Identities=18% Similarity=0.117 Sum_probs=61.9
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHH--H
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--L 89 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 89 (196)
.+.++.+|+|+|++||||||+++.|+..+ +..+++.|++.... .....+. .......+..+ +
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~-~~~~~~~----------~~~~~~~~~~l~~~ 88 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGL-CSDLGFS----------DADRKENIRRVGEV 88 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhh-hhcCCcC----------cccHHHHHHHHHHH
Confidence 34677899999999999999999999987 24556554443222 1111000 00001111111 1
Q ss_pred HHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHH
Q 029252 90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140 (196)
Q Consensus 90 ~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R 140 (196)
...+.. .+..+|.+........+..+.++......++|||++|.+++.+|
T Consensus 89 a~~~~~-~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 89 AKLMVD-AGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred HHHHhh-CCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence 222221 25555543322234566666653222223479999999999999
No 152
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.14 E-value=1.1e-09 Score=82.43 Aligned_cols=126 Identities=17% Similarity=0.262 Sum_probs=66.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHH--Hc-------CCcch---HHHHH---HHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEI--KS-------GSENG---TMIQN---MIK 75 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~~~~~~--~~-------~~~~~---~~~~~---~~~ 75 (196)
...|.+|.|.|++||||||+++.|+..+. ..++++|++..... .. +.+.. ..+.. .+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 35678999999999999999998876653 34566666553211 10 11110 11111 112
Q ss_pred cCCC-CCHHHH----HHHHHHH-HHhcCCCeEEEeccCCCHHHH-----HHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 76 EGKI-VPSEVT----IKLLQKA-MEESGNDKFLIDGFPRNEENR-----AAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 76 ~~~~-~~~~~~----~~~~~~~-l~~~~~~~~iidg~~~~~~~~-----~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.|.. +....+ .+..... ....+...+|+||.+...... ..+.. ....+|+.||+++|.+++.+|..+|
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~-~~d~~D~~IyvDa~~d~~~~w~i~R 217 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVF-VSDFVDFSIYVDAEEDLLQTWYINR 217 (290)
T ss_pred CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHH-HHHhCCEEEEEECCHHHHHHHHHHH
Confidence 2221 111111 0111100 000135677889954321110 01111 1235889999999999999998888
No 153
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=99.10 E-value=1e-08 Score=71.28 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=41.3
Q ss_pred cCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHH---HHHHHHHHHHhcchhHHHHHH--hcCcEEEEeCCCCce
Q 029252 120 TKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVE---TIRKRFKVFLESSLPVVQYYE--AKGKVRKVIFCSPIF 190 (196)
Q Consensus 120 ~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~~e 190 (196)
....+|.+|||.++|++|.+|+..| +......+.+ .+++..+.|.- ...+. ...++.++|++.+.+
T Consensus 150 ~~v~~dgiIYLrasPetc~~Ri~~R~R~EE~gipL~YLe~LH~~HE~WLi-----~~~f~~lq~vpvLVLDad~n~d 221 (244)
T KOG4235|consen 150 MDVSLDGIIYLRASPETCYKRIYLRAREEEKGIPLKYLEALHELHESWLI-----KLHFPNLQAVPVLVLDADHNMD 221 (244)
T ss_pred cccccceEEEeecChHHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHHHHH-----HHhhhHhhcCCeEEEecccchh
Confidence 3467899999999999999999999 2222233333 33333333321 11122 344799999887655
No 154
>PLN02772 guanylate kinase
Probab=99.08 E-value=2e-09 Score=83.44 Aligned_cols=136 Identities=22% Similarity=0.373 Sum_probs=83.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHc---CC----cchHHHHHHHHcCCCCCHH--------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSE-------- 83 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~-------- 83 (196)
..+.++|.||+|||||||++.|.+.+.. ..+......|..... +. -..+.+..++..+.++.+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 4468999999999999999999887632 222333333332111 00 0124455565555554332
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029252 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF 163 (196)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~ 163 (196)
+....+...+. .++.+|+| ...+....+.. ....+..++++..+.+++.+|+..| ..++.+.+++|+..+
T Consensus 214 Tsk~~V~~vl~--~Gk~vILd---LD~qGar~Lr~-~~l~~v~IFI~PPSlEeLe~RL~~R----GteseE~I~kRL~~A 283 (398)
T PLN02772 214 TSIEAVEVVTD--SGKRCILD---IDVQGARSVRA-SSLEAIFIFICPPSMEELEKRLRAR----GTETEEQIQKRLRNA 283 (398)
T ss_pred ccHHHHHHHHH--hCCcEEEe---CCHHHHHHHHH-hcCCeEEEEEeCCCHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence 22555666655 47778888 44455555554 3334434555556689999999988 334667899999877
Q ss_pred Hh
Q 029252 164 LE 165 (196)
Q Consensus 164 ~~ 165 (196)
..
T Consensus 284 ~~ 285 (398)
T PLN02772 284 EA 285 (398)
T ss_pred HH
Confidence 43
No 155
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=99.08 E-value=7e-09 Score=76.97 Aligned_cols=95 Identities=25% Similarity=0.372 Sum_probs=57.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---CC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES---GN 98 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~ 98 (196)
.+|+|+|.|||||||.++.| +.+|+.+++ .+|-.++.++++...... ..
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvD---------------------------NlP~~Ll~~l~~~~~~~~~~~~~ 53 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCVD---------------------------NLPPSLLPQLIELLAQSNSKIEK 53 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEEc---------------------------CCcHHHHHHHHHHHHhcCCCCce
Confidence 47899999999999999988 788887772 233333344443322111 13
Q ss_pred CeEEEeccCCC--HHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 99 DKFLIDGFPRN--EENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 99 ~~~iidg~~~~--~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
-.+++|--... .+....+.++ .....-.++||+++++++.+|..+-
T Consensus 54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eT 102 (284)
T PF03668_consen 54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSET 102 (284)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhc
Confidence 34567742111 1111222222 2222334999999999999999764
No 156
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.07 E-value=1e-09 Score=92.74 Aligned_cols=37 Identities=30% Similarity=0.533 Sum_probs=34.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~ 59 (196)
.|.|.|||||||||+|+.|++++++.+++.+.+++..
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 6899999999999999999999999999988888774
No 157
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.07 E-value=1.4e-09 Score=80.10 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=29.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR 57 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~ 57 (196)
+|.|+|.|||||||+++.+.+.++ ..+++.|++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 488999999999999999998773 45677777665
No 158
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.07 E-value=8.1e-10 Score=89.40 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=74.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHH--HcCCcch-----HHHH---HHHHcCCCCCHHHHH-
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEI--KSGSENG-----TMIQ---NMIKEGKIVPSEVTI- 86 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~--~~~~~~~-----~~~~---~~~~~~~~~~~~~~~- 86 (196)
..+.+|.|.|++||||||+++.|+..+. ...+.+|++..... ..+.... ..+. ..+..+..+....+-
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf 142 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDF 142 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCcccc
Confidence 3468999999999999999999998874 45677766532110 0000000 0000 112222222111110
Q ss_pred ---HHHHH-HHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc---cCCCCCCcHHHHHHH
Q 029252 87 ---KLLQK-AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR---NQGREDDNVETIRKR 159 (196)
Q Consensus 87 ---~~~~~-~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r~~~~~~~~~~~ 159 (196)
..... .+...+...+|+||.+..... +. ...|+.||++++.+.+..|...| ..|+ +.+.+.++
T Consensus 143 ~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~---Lr----~LlDlkIFVDtdvDirL~RRI~RD~~eRGr---s~EsVi~q 212 (656)
T PLN02318 143 KSSSRVGYRTLEVPSSRIVIIEGIYALSEK---LR----PLLDLRVSVTGGVHFDLVKRVLRDIQRAGQ---EPEEIIHQ 212 (656)
T ss_pred ccCcccCCceeecCCCcEEEEechhhccHh---HH----hhCCEEEEEcCCccHHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 00000 011113567889997665322 22 24689999998866655555555 3344 23333333
Q ss_pred HHHHHhcchhHHHHHHh
Q 029252 160 FKVFLESSLPVVQYYEA 176 (196)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ 176 (196)
+.....|....|..
T Consensus 213 ---~~~~VkP~y~~FIe 226 (656)
T PLN02318 213 ---ISETVYPMYKAFIE 226 (656)
T ss_pred ---HHHhhcchHHHHhC
Confidence 44444455555544
No 159
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.07 E-value=2.2e-09 Score=88.07 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=65.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCC------cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHH---HH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY------THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK---LL 89 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 89 (196)
+.+.+|+|+|+|||||||+++.|+++++. .+++.| .+++.+.+...+...-.. .... .+
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~-----------~~~~~l~~~ 457 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRD-----------LNILRIGFV 457 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHH-----------HHHHHHHHH
Confidence 45679999999999999999999999985 667665 445543322212111111 1111 11
Q ss_pred HHHHHhcCCCeEEEeccCCCHHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHh
Q 029252 90 QKAMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRIL 142 (196)
Q Consensus 90 ~~~l~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~ 142 (196)
.+.+. ..+.++|++........+..+.++ ......++|||++|.+++.+|..
T Consensus 458 a~~v~-~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 458 ASEIT-KNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred HHHHH-hCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcc
Confidence 22122 137788888643333333333332 11122358999999999999963
No 160
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=1.8e-08 Score=72.97 Aligned_cols=122 Identities=16% Similarity=0.269 Sum_probs=74.3
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCc------chH-HHHHHHHcCCCCCHH-H-----
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSE------NGT-MIQNMIKEGKIVPSE-V----- 84 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~-~----- 84 (196)
...|.+|+|.|+||.||||+|..||.++|..++-..|.+|+.+++--. ... .+..+...+.....+ +
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~ 165 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFE 165 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHH
Confidence 345789999999999999999999999998877777888887666111 111 111111111111111 1
Q ss_pred ---------HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEE-EEcCHHHHHHHHhhc
Q 029252 85 ---------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF-FDCSEEEMERRILNR 144 (196)
Q Consensus 85 ---------~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~-l~~~~~~~~~R~~~R 144 (196)
+...+++++. ++..+||+|.+..+.....-. . ....+.++ .-.+++....|+-.|
T Consensus 166 dqa~~V~~GI~~VI~RAi~--eG~~lIIEGvHlVPg~i~~~~--~-~~n~~~~~l~i~dee~Hr~RF~~R 230 (299)
T COG2074 166 DQASAVMVGIEAVIERAIE--EGEDLIIEGVHLVPGLIKEEA--L-GNNVFMFMLYIADEELHRERFYDR 230 (299)
T ss_pred HHhHHHHHHHHHHHHHHHh--cCcceEEEeeeeccccccHhh--h-ccceEEEEEEeCCHHHHHHHHHHH
Confidence 1344555555 588899999665554333211 1 12234444 456778888999988
No 161
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.05 E-value=1.8e-09 Score=75.35 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=71.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCC--c---------------chHHHHHHHHcCCCCCH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGS--E---------------NGTMIQNMIKEGKIVPS 82 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~ 82 (196)
..+|.|.|.+.|||||||+.|.+.|+ ...|+-||++........ . +.+.+...+......+.
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~ 83 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPE 83 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccch
Confidence 36789999999999999999999884 778888888765433210 0 11222233333222221
Q ss_pred HHHHHHHHH-----H-----HHhcCCCeEEEeccCCC--HHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 83 EVTIKLLQK-----A-----MEESGNDKFLIDGFPRN--EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 83 ~~~~~~~~~-----~-----l~~~~~~~~iidg~~~~--~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
....++.. . ....+.+.+|+||+... ..... ..+..+++..|-++|++|...|
T Consensus 84 -ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~--------~~d~~im~~~~y~~~krRr~~R 148 (225)
T KOG3308|consen 84 -AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD--------LFDRIIMLTLDYETCKRRREAR 148 (225)
T ss_pred -HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh--------hhhhheeeeccHHHHHHhhccc
Confidence 11111111 1 11112667999996532 22322 3556999999999999999999
No 162
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.04 E-value=7.3e-09 Score=88.21 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~ 59 (196)
...+|.|.|||||||||+|+.||+++++.+++.+.++|..
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 3468999999999999999999999999999999999975
No 163
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.02 E-value=6.7e-09 Score=86.82 Aligned_cols=112 Identities=20% Similarity=0.176 Sum_probs=68.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHH--HH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--LQ 90 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 90 (196)
..++.+|+++|.|||||||+|+.|+++++ ..+++.|+ +++.+..+..+...-. ...+..+ +.
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~~~~~~~~r----------~~~~~~l~~~a 525 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRDLGFSDADR----------VENIRRVAEVA 525 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCCCCCCHHHH----------HHHHHHHHHHH
Confidence 34689999999999999999999999973 45666655 4443322111111000 0111111 11
Q ss_pred HHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH
Q 029252 91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (196)
Q Consensus 91 ~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~ 141 (196)
..+. ..+..+|+|........++.+.+........++||++|.+++.+|.
T Consensus 526 ~~~~-~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 526 RLMA-DAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHH-hCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence 1111 2477888887544555666655522222447999999999999994
No 164
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=99.01 E-value=1.6e-09 Score=64.24 Aligned_cols=23 Identities=35% Similarity=0.723 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+|++.|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 165
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.99 E-value=2.3e-09 Score=76.03 Aligned_cols=133 Identities=21% Similarity=0.348 Sum_probs=76.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCCHH--------H
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE--------V 84 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~--------~ 84 (196)
++.|+|+||+||||||+++.|.+.++. .........|..-.+ +.. ..+.+..+...+.++... +
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 578999999999999999999998752 111111112221110 111 123444444444433211 1
Q ss_pred HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC-HHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029252 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKVF 163 (196)
Q Consensus 85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~ 163 (196)
....+...+. .++..|+|.. .+....+.. ....| .+||+.++ .+.+.+|+..| ..+..+.+.+|+...
T Consensus 82 ~~~~i~~~~~--~gk~~il~~~---~~g~~~L~~-~~~~~-~~IfI~~~s~~~l~~~l~~r----~~~~~~~i~~r~~~~ 150 (183)
T PF00625_consen 82 SKSAIDKVLE--EGKHCILDVD---PEGVKQLKK-AGFNP-IVIFIKPPSPEVLKRRLRRR----GDESEEEIEERLERA 150 (183)
T ss_dssp EHHHHHHHHH--TTTEEEEEET---HHHHHHHHH-CTTTE-EEEEEEESSHHHHHHHHHTT----THCHHHHHHHHHHHH
T ss_pred ccchhhHhhh--cCCcEEEEcc---HHHHHHHHh-cccCc-eEEEEEccchHHHHHHHhcc----ccccHHHHHHHHHHH
Confidence 2455666665 4777888843 455555665 54444 57777655 67788887766 445566777777665
Q ss_pred H
Q 029252 164 L 164 (196)
Q Consensus 164 ~ 164 (196)
.
T Consensus 151 ~ 151 (183)
T PF00625_consen 151 E 151 (183)
T ss_dssp H
T ss_pred H
Confidence 5
No 166
>PHA00729 NTP-binding motif containing protein
Probab=98.91 E-value=5e-08 Score=70.56 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
....|+|+|+||+||||+|..|+++++. ..++.++..... .. ....+..+.....+........
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~--~~------------~~~fid~~~Ll~~L~~a~~~~~ 81 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY--VQ------------NSYFFELPDALEKIQDAIDNDY 81 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhc--CC------------cEEEEEHHHHHHHHHHHHhcCC
Confidence 3357999999999999999999998752 222222111111 00 0011222222333433332211
Q ss_pred -CCeEEEeccCCCHHH--HH--------HHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 98 -NDKFLIDGFPRNEEN--RA--------AFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 98 -~~~~iidg~~~~~~~--~~--------~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
...+|+|++...... .. .+..+....++.++++.++++.+.+++.+|
T Consensus 82 ~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 82 RIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred CCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 245689973221111 00 011112225778999999999999999998
No 167
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.81 E-value=1.9e-08 Score=71.54 Aligned_cols=132 Identities=15% Similarity=0.147 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (196)
++|+++|.|+|||||.|+.|.+.|. ..++-.+|.. -.+..++.++....+..-. ..+...+.+.+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~~s~~EK~lR------g~L~S~v~R~Ls-- 72 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYGDSQAEKALR------GKLRSAVDRSLS-- 72 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCcccccccHHHHHHH------HHHHHHHHhhcc--
Confidence 4799999999999999999998873 2333333322 1111122222211111111 112334444443
Q ss_pred CCCeEEEeccCCCHHHHHH---HHhhcCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHH
Q 029252 97 GNDKFLIDGFPRNEENRAA---FEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVF 163 (196)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~---~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~~~~ 163 (196)
.+..||+|.....+-.+.. ..+ .....-.+|+..+|.+.|++...+| ..+.+..+.+.+..-+.+|
T Consensus 73 k~~iVI~DslNyIKGfRYeLyC~ak-~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~Ry 142 (281)
T KOG3062|consen 73 KGDIVIVDSLNYIKGFRYELYCEAK-AARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRY 142 (281)
T ss_pred cCcEEEEecccccccceeeeeeehh-ccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHHh
Confidence 3888999964332222222 111 2222335899999999999999888 2222333334444444444
No 168
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.1e-08 Score=79.93 Aligned_cols=128 Identities=16% Similarity=0.249 Sum_probs=75.1
Q ss_pred ccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHH--HHHHHHHHcCC--cchHHHHHHHHcCC------------
Q 029252 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG--DLLRAEIKSGS--ENGTMIQNMIKEGK------------ 78 (196)
Q Consensus 15 ~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~--d~~~~~~~~~~--~~~~~~~~~~~~~~------------ 78 (196)
.+...+|.-++++||||||||.+|+.+|.+++.++++.. .++... .+.+ ...+.|.+......
T Consensus 217 ~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv-SGESEkkiRelF~~A~~~aPcivFiDeIDAI~ 295 (802)
T KOG0733|consen 217 SLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV-SGESEKKIRELFDQAKSNAPCIVFIDEIDAIT 295 (802)
T ss_pred hcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc-CcccHHHHHHHHHHHhccCCeEEEeecccccc
Confidence 344556788999999999999999999999998887632 111111 1100 11122222111100
Q ss_pred ----CCCHHHHHHHHHHHH---Hhc-----CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 79 ----IVPSEVTIKLLQKAM---EES-----GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 79 ----~~~~~~~~~~~~~~l---~~~-----~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
....+.-..++...+ ... .+..|++-|....++..+--.+ +...+|.-|+|.+|.++.+.++..-
T Consensus 296 pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR-RaGRFdrEI~l~vP~e~aR~~IL~~ 372 (802)
T KOG0733|consen 296 PKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR-RAGRFDREICLGVPSETAREEILRI 372 (802)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh-ccccccceeeecCCchHHHHHHHHH
Confidence 001112222222222 111 1566777775555555444444 7888999999999999999998875
No 169
>PLN02165 adenylate isopentenyltransferase
Probab=98.79 E-value=5.3e-08 Score=74.27 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=33.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~ 55 (196)
.++.+|+|.||+||||||++..|++.++..+++.|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3457899999999999999999999999999998776
No 170
>PHA03136 thymidine kinase; Provisional
Probab=98.76 E-value=3.2e-07 Score=70.73 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=25.1
Q ss_pred cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (196)
Q Consensus 120 ~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~ 151 (196)
....+|.+|||+.+++++.+|+.+| +|+.+
T Consensus 188 ~~p~pD~IIyL~l~~e~~~~RI~kR--gR~~E 217 (378)
T PHA03136 188 DEPHGGNIVIMDLDECEHAERIIAR--GRPGE 217 (378)
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHc--CCCcc
Confidence 3456899999999999999999999 55443
No 171
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.76 E-value=3.6e-07 Score=62.35 Aligned_cols=125 Identities=15% Similarity=0.272 Sum_probs=72.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252 24 VFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 102 (196)
++=.+.+||||||++..|++-|+ +-++..|++..+ ....+...+.+.+.+.....||
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k----------------------~~~~f~~~~l~~L~~~~~~vVi 59 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK----------------------RKPKFIKAVLELLAKDTHPVVI 59 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC----------------------CHHHHHHHHHHHHhhCCCCEEE
Confidence 45578999999999999999999 999888775322 1111233333445444688899
Q ss_pred EeccCCCHHHHHHHHhh-cCCCC-------cE-EEEEE----cCH----HHHHHHHhhccC----CCCCC-cHHHHHHHH
Q 029252 103 IDGFPRNEENRAAFEAV-TKIEP-------EF-VLFFD----CSE----EEMERRILNRNQ----GREDD-NVETIRKRF 160 (196)
Q Consensus 103 idg~~~~~~~~~~~~~~-~~~~~-------~~-~i~l~----~~~----~~~~~R~~~R~~----~r~~~-~~~~~~~~~ 160 (196)
.|.......+++.+.+. ....+ .+ +|.|. .+. +.+.+|+.+|.. -+.+. ....+..-|
T Consensus 60 aDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im 139 (168)
T PF08303_consen 60 ADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIM 139 (168)
T ss_pred EeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHH
Confidence 99887777666655432 11001 11 33332 122 567788888811 11222 334455555
Q ss_pred HHHHhcchhH
Q 029252 161 KVFLESSLPV 170 (196)
Q Consensus 161 ~~~~~~~~~~ 170 (196)
..|.....|+
T Consensus 140 ~gFi~rfep~ 149 (168)
T PF08303_consen 140 EGFIKRFEPV 149 (168)
T ss_pred HHHHHhcCCC
Confidence 5665544444
No 172
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.66 E-value=5.8e-07 Score=65.52 Aligned_cols=93 Identities=25% Similarity=0.360 Sum_probs=55.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH-hc--CC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-ES--GN 98 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~--~~ 98 (196)
.+|+|+|.||||||+.++.| +.+|+.+++ .+|-.++.+++.-... +. ..
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvD---------------------------NLPp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVD---------------------------NLPPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeec---------------------------CCCHHHHHHHHHHHhhcccCCce
Confidence 47999999999999999988 778876662 2333333333332111 11 13
Q ss_pred CeEEEeccC----CCH-HHHHHHHhhcCCCCc-EEEEEEcCHHHHHHHHhhc
Q 029252 99 DKFLIDGFP----RNE-ENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 99 ~~~iidg~~----~~~-~~~~~~~~~~~~~~~-~~i~l~~~~~~~~~R~~~R 144 (196)
-.+++|--. ... +....+.+ .. ..+ .++||+++.+++.+|..+-
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~-~~-~~~~~iLFLeA~~~~Lv~RY~et 103 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKD-NG-DIDPRVLFLEADDETLVRRYSET 103 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHh-cC-CCCceEEEEECchhHHHHHHhhh
Confidence 345677311 111 11222222 22 222 4999999999999999764
No 173
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.66 E-value=7.8e-08 Score=70.73 Aligned_cols=126 Identities=17% Similarity=0.268 Sum_probs=69.2
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHH------HHH---HHHcCCcchH---H---HHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDL------LRA---EIKSGSENGT---M---IQNMI 74 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~------~~~---~~~~~~~~~~---~---~~~~~ 74 (196)
....|.+|.+.|++|+||||+|+.|+..+. ...+.+|-+ +.+ +-.+|.+..- . +-..+
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~v 157 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDV 157 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHH
Confidence 355678999999999999999999988663 122222211 111 0011222211 1 11122
Q ss_pred HcCCC-CCHHHHHHHHHHHH----H-hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 75 KEGKI-VPSEVTIKLLQKAM----E-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 75 ~~~~~-~~~~~~~~~~~~~l----~-~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
+.+.. +....+-..+...+ . ....+.+|++|.+...+.. -+.. ...-+|+.||+|++.+.+.+|..+|
T Consensus 158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~-p~~~-~sdffDfSIyvDa~~~~le~wyi~R 231 (283)
T COG1072 158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGE-PWLF-LSDFFDFSIYVDADEELLEERYIER 231 (283)
T ss_pred hcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCC-cccc-ccccceEEEEecCCHHHHHHHHHHH
Confidence 22222 22222222221111 1 1125678899966444332 1111 3445789999999999999999999
No 174
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.61 E-value=1.8e-07 Score=63.13 Aligned_cols=108 Identities=13% Similarity=0.227 Sum_probs=55.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCc-EecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCCH--------HHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYT-HLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS--------EVTI 86 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~-~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--------~~~~ 86 (196)
+|+|.||+||||||+++.|++.+... ........+..... +.. ....+......+.++.. ....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 37899999999999999999876421 11111111111000 000 11233333443332211 1224
Q ss_pred HHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHH
Q 029252 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (196)
Q Consensus 87 ~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~ 137 (196)
..+...+. .++.+|+|.. .+....+.. ....+ .+||+.+|+.++
T Consensus 81 ~~i~~~~~--~g~~~il~~~---~~~~~~l~~-~~~~~-~~I~i~~~~~~~ 124 (137)
T cd00071 81 AAVEEALA--EGKIVILEID---VQGARQVKK-SYPDA-VSIFILPPDYVI 124 (137)
T ss_pred HHHHHHHh--CCCeEEEEec---HHHHHHHHH-cCCCe-EEEEEECCCeEE
Confidence 44555554 4788888853 333444444 33322 588888884433
No 175
>PRK06761 hypothetical protein; Provisional
Probab=98.54 E-value=8.4e-07 Score=66.59 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
++++|+|.|+|||||||+++.|++++..
T Consensus 2 m~~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 2 MTKLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 3578999999999999999999999864
No 176
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=1.6e-06 Score=57.85 Aligned_cols=99 Identities=13% Similarity=0.246 Sum_probs=59.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (196)
..+++|.|+.||||||+++.+++.+. ..+++.++........ .+ ..+.+.+... .
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~------------------~~--~~~~~~~~~~-~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD------------------PD--LLEYFLELIK-P 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh------------------hh--hHHHHHHhhc-c
Confidence 46799999999999999999998864 6677766544322100 00 1222222211 1
Q ss_pred CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHH
Q 029252 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140 (196)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R 140 (196)
....+++|......+....+..+....++.-+++..+......+
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK 104 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence 35668899766555544444443222256677777776665543
No 177
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.49 E-value=1.1e-06 Score=58.87 Aligned_cols=118 Identities=20% Similarity=0.255 Sum_probs=60.6
Q ss_pred cccCCCCCcEEEEEcCCCCChHHHHHHHHHHh---C-CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHH
Q 029252 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---G-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL 89 (196)
Q Consensus 14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~---~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (196)
+.+..++..+|+|+|.+||||||+|-.|.+.+ | ..++-.+|=+|.-+.. ..+...+... ..+ --...+
T Consensus 24 q~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~--DL~F~a~dR~---ENI---RRigeV 95 (207)
T KOG0635|consen 24 QKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK--DLGFKAEDRN---ENI---RRIGEV 95 (207)
T ss_pred HHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc--ccCcchhhhh---hhH---HHHHHH
Confidence 44556678899999999999999999998877 2 3344333434432222 1111111100 000 001222
Q ss_pred HHHHHhcCCCeEEEeccCCC-HHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH
Q 029252 90 QKAMEESGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (196)
Q Consensus 90 ~~~l~~~~~~~~iidg~~~~-~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~ 141 (196)
..... +...+.|-.+-.. ...++...++.......-||+++|.++|.+|-
T Consensus 96 aKLFA--Dag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RD 146 (207)
T KOG0635|consen 96 AKLFA--DAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARD 146 (207)
T ss_pred HHHHh--ccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccC
Confidence 22222 2222333332111 12333444432223446899999999998874
No 178
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=8.4e-06 Score=66.69 Aligned_cols=128 Identities=16% Similarity=0.239 Sum_probs=69.4
Q ss_pred cccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHHHHcCC-cchHHHHHHHH---------------
Q 029252 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGS-ENGTMIQNMIK--------------- 75 (196)
Q Consensus 14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~~~~~~~~~-~~~~~~~~~~~--------------- 75 (196)
..+.-.+|+-|++.|||||||||+|+.+|+.-+..+++ ..+++.+++...+ ..+..|..+-.
T Consensus 461 ~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~ 540 (693)
T KOG0730|consen 461 ARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALA 540 (693)
T ss_pred HHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHh
Confidence 34455677899999999999999999999988765554 3444444432221 11112221111
Q ss_pred --cCCCCCHHHHHHHHHHHHHhcC----CCeEEEeccCCCHHHHHH-HHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 76 --EGKIVPSEVTIKLLQKAMEESG----NDKFLIDGFPRNEENRAA-FEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 76 --~~~~~~~~~~~~~~~~~l~~~~----~~~~iidg~~~~~~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
++.... ......+...+.+-+ .+.|++-+..+.++..+. +. +-...|.+||+..|+......+.+-
T Consensus 541 ~~R~g~~~-~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALl--RPGRlD~iiyVplPD~~aR~~Ilk~ 613 (693)
T KOG0730|consen 541 GSRGGSSS-GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALL--RPGRLDRIIYVPLPDLEARLEILKQ 613 (693)
T ss_pred hccCCCcc-chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHc--CCcccceeEeecCccHHHHHHHHHH
Confidence 110000 111222222222222 333444433333333222 22 4556899999999999888888764
No 179
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=98.47 E-value=1e-06 Score=63.29 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=68.4
Q ss_pred ccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCc-------------EecHHHH--HHHHHHcCCcchHHHHHHHHcC-C
Q 029252 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT-------------HLSAGDL--LRAEIKSGSENGTMIQNMIKEG-K 78 (196)
Q Consensus 15 ~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~-------------~~~~~d~--~~~~~~~~~~~~~~~~~~~~~~-~ 78 (196)
.+.+....++.+.|+||+||||++..+.++++.. ++.+|-+ .+..... +..-....-.+| .
T Consensus 113 ~L~~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~---f~dP~~AharRGap 189 (323)
T KOG2702|consen 113 ALTSNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDL---FKDPQTAHARRGAP 189 (323)
T ss_pred HhcccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHh---hcChHHHHhhcCCC
Confidence 4456667899999999999999999999876422 1222221 1111111 000000011111 1
Q ss_pred CCCH-HHHHHHHHHHH----------------H---------hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEc
Q 029252 79 IVPS-EVTIKLLQKAM----------------E---------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC 132 (196)
Q Consensus 79 ~~~~-~~~~~~~~~~l----------------~---------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~ 132 (196)
+.++ +++.++++-.- . +..++.+|++|.+...++ ..|.+ .....+...++++
T Consensus 190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~-~~Wkd-i~k~~d~k~~idV 267 (323)
T KOG2702|consen 190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQ-ENWKD-IYKTLDDKYKIDV 267 (323)
T ss_pred cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecC-ccHHH-HHHHhhhheeccc
Confidence 2222 33333322211 0 011566889997655544 22333 2233555799999
Q ss_pred CHHHHHHHHhhc
Q 029252 133 SEEEMERRILNR 144 (196)
Q Consensus 133 ~~~~~~~R~~~R 144 (196)
+-++..+|...|
T Consensus 268 ~~~~a~~RVa~R 279 (323)
T KOG2702|consen 268 DYEAAEERVAKR 279 (323)
T ss_pred cHHHHHHHHHHH
Confidence 999999999999
No 180
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.45 E-value=1.6e-06 Score=61.23 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=56.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-C--C----cchHHHH--HH---HHcC-------CCCCHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-G--S----ENGTMIQ--NM---IKEG-------KIVPSE 83 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~-~--~----~~~~~~~--~~---~~~~-------~~~~~~ 83 (196)
+|.|.|..|||++|+++.||+++|+.+++- +++...... + . .+.+... .. +..+ .....+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 588999999999999999999999999988 555443222 0 0 0111111 11 1111 111122
Q ss_pred HHHHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 84 VTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 84 ~~~~~~~~~l~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.+.......+.+. ....+|+.|.. ...+. ...+..+-|||.+|.+...+|+.+|
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~GR~-----a~~il--~~~~~~l~V~i~A~~~~Rv~ri~~~ 134 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIVGRC-----ANYIL--RDIPNVLHVFIYAPLEFRVERIMER 134 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEESTT-----HHHHT--TT-TTEEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEecC-----Hhhhh--CCCCCeEEEEEECCHHHHHHHHHHH
Confidence 2222222222211 13455666532 12222 2334457999999999999999988
No 181
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.1e-06 Score=66.13 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAE 59 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~~~~ 59 (196)
+-++|+||||+|||.||+.++...+..+|+ ..++..++
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW 285 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh
Confidence 579999999999999999999999976654 44444443
No 182
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.44 E-value=1.4e-05 Score=67.50 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRA 58 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~-----~~~~~~d~~~~ 58 (196)
...+++|.|.||+||||+++.|++.+++ .++..+.+-+.
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~ 257 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRR 257 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhh
Confidence 3568999999999999999999999854 44455444433
No 183
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.43 E-value=1.8e-07 Score=62.40 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=24.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 24 VFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
|+|.|+||+||||+++.+++.++..++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~ 27 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFI 27 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccc
Confidence 689999999999999999999986554
No 184
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.43 E-value=2.5e-05 Score=56.95 Aligned_cols=150 Identities=17% Similarity=0.123 Sum_probs=82.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
.+.|.+|++.|..||||..+.+.|.+.++-..+.+-.+ ..+... +.....+.+.-...+
T Consensus 28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~-------~~pt~e--------------E~~~p~lwRfw~~lP 86 (230)
T TIGR03707 28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVAL-------PKPSDR--------------ERTQWYFQRYVQHLP 86 (230)
T ss_pred cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeC-------CCCCHH--------------HHcChHHHHHHHhCC
Confidence 34689999999999999999999999996433322110 000000 000111111111112
Q ss_pred --CCeEEEeccCCC-------------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc---cCCCCCC
Q 029252 98 --NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR---NQGREDD 151 (196)
Q Consensus 98 --~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r~~~ 151 (196)
++..|+++.... .++...|++. .....-+-|||.++.++..+|+.+| ...+-..
T Consensus 87 ~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~ 166 (230)
T TIGR03707 87 AAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKL 166 (230)
T ss_pred CCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccC
Confidence 555666653211 1112222222 4444557999999999999999999 2233334
Q ss_pred cHHHHHH--HHHHHHhcchhHHHHHH-hcCcEEEEeCCCC
Q 029252 152 NVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKVIFCSP 188 (196)
Q Consensus 152 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~ 188 (196)
+...+.. +...|......++..-. ...++++|+++..
T Consensus 167 ~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk 206 (230)
T TIGR03707 167 SPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDK 206 (230)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence 4333333 34555544444444332 2348999998753
No 185
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=7.1e-06 Score=64.70 Aligned_cols=108 Identities=25% Similarity=0.372 Sum_probs=57.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh----CC-cEecHHHHHHHHHHcCCcchHHHHHHHHcCC-C-CCHHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF----GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGK-I-VPSEVTIKLLQKA 92 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~----~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 92 (196)
++.++++.|++||||||++..|+..+ +. ..+...|..+... ...+..+..... . ..... ...+...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA------~eQLk~yAe~lgvp~~~~~~-~~~l~~~ 294 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA------IEQLKRYADTMGMPFYPVKD-IKKFKET 294 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH------HHHHHHHHHhcCCCeeehHH-HHHHHHH
Confidence 45789999999999999999999765 21 3333335554421 122222222111 1 11111 2233333
Q ss_pred HHhcCCCeEEEe--ccC-CCHHHHHHHHhhc---C--CCCcEEEEEEcCH
Q 029252 93 MEESGNDKFLID--GFP-RNEENRAAFEAVT---K--IEPEFVLFFDCSE 134 (196)
Q Consensus 93 l~~~~~~~~iid--g~~-~~~~~~~~~~~~~---~--~~~~~~i~l~~~~ 134 (196)
+.....+.++|| |++ ....+...+..+. . .+...+++|++.-
T Consensus 295 l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 295 LARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 443346779999 543 4556666665531 1 1334566666554
No 186
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=6.2e-06 Score=61.67 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=33.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAEIK 61 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~--~~~~d~~~~~~~ 61 (196)
.-|++.||||+|||++|+.+|..-+..+ ++..|++.+++.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 5699999999999999999999887544 456788877643
No 187
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.40 E-value=3.1e-07 Score=69.95 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~ 55 (196)
++.+|+|.||+||||||+|..|+++++..+++.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 457899999999999999999999999988888773
No 188
>PHA03135 thymidine kinase; Provisional
Probab=98.38 E-value=1.5e-05 Score=60.81 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..|.|.|+.|+||||+++.+++..
T Consensus 10 ~~rIYlDG~~GvGKTT~~~~l~~~~ 34 (343)
T PHA03135 10 LIRVYLDGPFGIGKTSMLNEMPDHS 34 (343)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3679999999999999999998753
No 189
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=9.5e-07 Score=67.33 Aligned_cols=64 Identities=25% Similarity=0.444 Sum_probs=48.4
Q ss_pred cccCchhhhh--cccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHHHHHcCCcch
Q 029252 4 VVETPVKEAD--ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSENG 67 (196)
Q Consensus 4 ~~~~~~~~~~--~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~~~~~~~~~~~~~ 67 (196)
++|.|+..++ ..+.-.+|+-|++.||||+|||-+|+++|.+-++.+| .-..++.+.+..++.+-
T Consensus 166 ~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlV 233 (406)
T COG1222 166 VVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLV 233 (406)
T ss_pred HhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHH
Confidence 4567776544 5677778899999999999999999999999987665 44566666655555443
No 190
>PLN02840 tRNA dimethylallyltransferase
Probab=98.35 E-value=5.3e-07 Score=71.01 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=32.2
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d 54 (196)
...+..+|+|.||+||||||++..|+++++..+++.|.
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 34455789999999999999999999999887777654
No 191
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.31 E-value=7.6e-07 Score=60.43 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.+.+.|+|+|+||+||||+++++++.+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 3567899999999999999999998874
No 192
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.31 E-value=6e-05 Score=60.86 Aligned_cols=146 Identities=13% Similarity=0.086 Sum_probs=81.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (196)
...+.+|++.|..||||+++.+.|.+.++- .+......... +.....+.+.-.
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~e------------------------E~~~~flwRfw~ 92 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDE------------------------ERERPPMWRFWR 92 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHH------------------------HhcCcHHHHHHH
Confidence 356899999999999999999999999863 33322110000 000111211111
Q ss_pred hcC--CCeEEEeccCCC-------------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc---cCCC
Q 029252 95 ESG--NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR---NQGR 148 (196)
Q Consensus 95 ~~~--~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r 148 (196)
..+ |...|.|++... .++...|++. .....-+-|||.++.++..+|+.+| ...+
T Consensus 93 ~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~ 172 (493)
T TIGR03708 93 RLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETR 172 (493)
T ss_pred hCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence 112 566666652211 1111222221 3444456999999999999999999 2223
Q ss_pred CCCcHHHHHH--HHHHHHhcchhHHHHHH-hcCcEEEEeCCC
Q 029252 149 EDDNVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKVIFCS 187 (196)
Q Consensus 149 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 187 (196)
-..+...+.. +...|......++..-. ...++++|+++.
T Consensus 173 WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~add 214 (493)
T TIGR03708 173 WRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGED 214 (493)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 3344444433 34445444444443322 233899999875
No 193
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.29 E-value=1.9e-05 Score=63.97 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=29.3
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
...|+-|++.||||||||++|+.++..++.+++.
T Consensus 256 l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~ 289 (489)
T CHL00195 256 LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR 289 (489)
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3456789999999999999999999999876554
No 194
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.7e-06 Score=65.19 Aligned_cols=43 Identities=16% Similarity=0.433 Sum_probs=33.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCc-----------EecHHHHHHHHHHc
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT-----------HLSAGDLLRAEIKS 62 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~-----------~~~~~d~~~~~~~~ 62 (196)
..++|++.||||+|||++||.|++++... -++...++.+++..
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsE 229 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSE 229 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhh
Confidence 35789999999999999999999998422 24566666666554
No 195
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.24 E-value=3.6e-06 Score=56.10 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
...+++|.|++|+|||++++.+++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999976
No 196
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.23 E-value=1e-06 Score=69.62 Aligned_cols=46 Identities=28% Similarity=0.358 Sum_probs=34.7
Q ss_pred cccCchhh---hhcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 4 VVETPVKE---ADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 4 ~~~~~~~~---~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
++++|.+. .+....+.....|+|.|++|||||||++.|++++|...
T Consensus 199 IR~~p~~~w~~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 199 IRENPFRYWEYIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred HhhCHHHHHHhcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 45566653 33334445668899999999999999999999998654
No 197
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=98.23 E-value=9.8e-05 Score=54.98 Aligned_cols=151 Identities=11% Similarity=0.115 Sum_probs=81.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (196)
..|.+|++.|..||||..+.+.|.+.++-..+.+-.+ ..+..... . .. . ...+...+= ..+
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~-------~~Pt~eE~----~--~p----~-lWRfw~~lP-~~G 114 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF-------KAPSAEEL----D--HD----F-LWRIHKALP-ERG 114 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC-------CCCCHHHH----c--Cc----h-HHHHHHhCC-CCC
Confidence 3489999999999999999999999986443332110 00000000 0 00 0 111222221 126
Q ss_pred CeEEEeccCCC-------------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc-c--CCCCCCcHH
Q 029252 99 DKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-N--QGREDDNVE 154 (196)
Q Consensus 99 ~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R-~--~~r~~~~~~ 154 (196)
...|+|+.... .++...|++. .....-+-|||.++.++..+|+.+| . ..+-..+..
T Consensus 115 ~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~ 194 (264)
T TIGR03709 115 EIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPA 194 (264)
T ss_pred eEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHH
Confidence 66666653211 1111222221 3444457999999999999999998 1 222233333
Q ss_pred HHHH--HHHHHHhcchhHHHHHH-hcCcEEEEeCCCC
Q 029252 155 TIRK--RFKVFLESSLPVVQYYE-AKGKVRKVIFCSP 188 (196)
Q Consensus 155 ~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~ 188 (196)
.+.. +...|......++..-. ...++++|+++..
T Consensus 195 D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk 231 (264)
T TIGR03709 195 DLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDK 231 (264)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence 3332 44555544444444322 2448999998753
No 198
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.20 E-value=1.5e-06 Score=62.69 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
.-+++.||||+||||+|+.+|+.++..+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCe
Confidence 4589999999999999999999998544
No 199
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=98.19 E-value=7.9e-06 Score=58.27 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=58.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH-HcC--CcchHHH---------HHHHHcCCCCCHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSG--SENGTMI---------QNMIKEGKIVPSEVTIKLL 89 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~-~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 89 (196)
.+++|.||+|+|||.+|-.||+++|.++++.|.+..-.- .-+ .+....+ ...+..|. ++.+...+.+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L 80 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL 80 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence 468999999999999999999999999998876544320 101 1111111 11233343 3333334444
Q ss_pred HHHHHhcC-CCeEEEeccCCCHHHHHHHHhhc---CCCCcEEEEEEcC-HHHHHHHHhhc
Q 029252 90 QKAMEESG-NDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCS-EEEMERRILNR 144 (196)
Q Consensus 90 ~~~l~~~~-~~~~iidg~~~~~~~~~~~~~~~---~~~~~~~i~l~~~-~~~~~~R~~~R 144 (196)
...+.... +.++|++|-.-+ -...+.+.. ..-...+.++..+ .+....|..+|
T Consensus 81 i~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 81 ISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 44444333 889999984322 222222211 2223456677665 46677777777
No 200
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=98.19 E-value=2.7e-06 Score=61.28 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcE-ecHHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIK 61 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~-~~~~d~~~~~~~ 61 (196)
++|+|+|+|||||||+++.+.++ +..+ +++.+.++..+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence 47999999999999999988655 5555 888888887544
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.18 E-value=1.6e-06 Score=57.96 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
+..++|.|+|||||||+++.++..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 467999999999999999999998854
No 202
>PLN02748 tRNA dimethylallyltransferase
Probab=98.18 E-value=2.1e-06 Score=68.75 Aligned_cols=36 Identities=33% Similarity=0.545 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d 54 (196)
.++.+|+|.||+||||||++..|+++++..+++.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 456789999999999999999999999999998865
No 203
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.17 E-value=2.2e-06 Score=66.24 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+.++++|.|||||||||+++.|++.++.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34688999999999999999999998853
No 204
>PRK09087 hypothetical protein; Validated
Probab=98.17 E-value=2.3e-05 Score=57.37 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA 58 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~ 58 (196)
.+.++|.|++|||||++++.+++..+..+++.+++...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~ 81 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSD 81 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchH
Confidence 35689999999999999999999888888888654443
No 205
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.16 E-value=1.7e-06 Score=65.24 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=29.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d 54 (196)
+|+|.||+|||||+++..|++.++..+++.|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 48999999999999999999999988888866
No 206
>PHA03138 thymidine kinase; Provisional
Probab=98.15 E-value=9.2e-05 Score=56.66 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..|.|.|+.|+||||+++.+.+.+
T Consensus 12 ~~riYleG~~GvGKTT~~~~~l~~~ 36 (340)
T PHA03138 12 ILRIYLDGAFGIGKTTAAEAFLHGF 36 (340)
T ss_pred EEEEEEECCCCcCHHhHHHHHHHhh
Confidence 3679999999999999998787655
No 207
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=98.15 E-value=2e-05 Score=57.54 Aligned_cols=146 Identities=14% Similarity=0.158 Sum_probs=73.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (196)
.|.+|++.|..||||+.+.+.|.+.++- .+.+.......... ... ...+...+ -.
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~~----------------~p~-----lwRfw~~l-P~ 87 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEELR----------------RPF-----LWRFWRAL-PA 87 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHHT----------------S-T-----THHHHTTS---
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHcC----------------CCc-----HHHHHHhC-CC
Confidence 4589999999999999999999988753 33332211111100 000 11111111 11
Q ss_pred CCCeEEEeccCCC-------------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc---cCCCCCCc
Q 029252 97 GNDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR---NQGREDDN 152 (196)
Q Consensus 97 ~~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r~~~~ 152 (196)
.|...|+|+.... .++...|++. .....-+-|||.++.++..+|+.+| ...+-..+
T Consensus 88 ~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wkv~ 167 (228)
T PF03976_consen 88 RGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWKVS 167 (228)
T ss_dssp TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG--
T ss_pred CCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccccccCC
Confidence 2777777763211 1111222221 4444557999999999999999999 22333333
Q ss_pred HHHHHH--HHHHHHhcchhHHHHHH-hcCcEEEEeCCC
Q 029252 153 VETIRK--RFKVFLESSLPVVQYYE-AKGKVRKVIFCS 187 (196)
Q Consensus 153 ~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 187 (196)
+..+.. ....|......++..-. ...++++|+++.
T Consensus 168 ~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~d 205 (228)
T PF03976_consen 168 PEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADD 205 (228)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SS
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCC
Confidence 443333 34455544444444322 344899999875
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=98.15 E-value=9.6e-06 Score=62.61 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+|.+|+++|++|+||||++..|+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999888888765
No 209
>CHL00181 cbbX CbbX; Provisional
Probab=98.15 E-value=9.8e-05 Score=56.06 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+..+++.|+||+||||+|+.+++.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999998865
No 210
>PHA03134 thymidine kinase; Provisional
Probab=98.14 E-value=0.00041 Score=53.16 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.6
Q ss_pred cEEEEEEcCHHHHHHHHhhccCCCCCCc
Q 029252 125 EFVLFFDCSEEEMERRILNRNQGREDDN 152 (196)
Q Consensus 125 ~~~i~l~~~~~~~~~R~~~R~~~r~~~~ 152 (196)
+.+|+++.++++..+|+.+| +|+.+.
T Consensus 165 ~niVl~~l~~~e~~~Rl~~R--~R~gE~ 190 (340)
T PHA03134 165 GNLVVTTLNPDEHLRRLRAR--ARIGEQ 190 (340)
T ss_pred CeEEEEeCCHHHHHHHHHHc--CCCccc
Confidence 78999999999999999999 555543
No 211
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.14 E-value=1.9e-06 Score=59.90 Aligned_cols=37 Identities=27% Similarity=0.532 Sum_probs=25.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~ 62 (196)
.|+|+|++||||||+++.|+++ |+.++ ....+.....
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~ 37 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEE 37 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHH
Confidence 3899999999999999999988 87766 4555554433
No 212
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.13 E-value=3.2e-06 Score=57.06 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=23.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 24 VFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
|+|.|+||+|||++++.+++.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 78999999999999999999998654
No 213
>PRK09169 hypothetical protein; Validated
Probab=98.12 E-value=0.00011 Score=67.61 Aligned_cols=108 Identities=12% Similarity=0.067 Sum_probs=74.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
...|+|+|.+|+||||+.+.|+.+++..+++.|..+.+. .+..+..++ ..| .+.+.-...+...+. ..
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr---~~ 2178 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG--LSPEQAAARVRDALR---WE 2178 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC--chHHHHHHHHHHHhc---CC
Confidence 357899999999999999999999999999998877765 334444444 333 555666666666553 33
Q ss_pred eEEEe-cc-CCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 100 KFLID-GF-PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 100 ~~iid-g~-~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.||=. |+ .........+.. -.++||+..+.+++.+|+...
T Consensus 2179 vVLSTGGGav~~~enr~~L~~-----~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2179 VVLPAEGFGAAVEQARQALGA-----KGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred eEEeCCCCcccCHHHHHHHHH-----CCEEEEEECCHHHHHHHhccC
Confidence 33322 32 233444444544 236999999999999998754
No 214
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.12 E-value=2.7e-06 Score=66.86 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG 53 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~ 53 (196)
.|..|+|.|||||||||+++.|++.++.+++..+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 4578999999999999999999999998777665
No 215
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.10 E-value=4.3e-06 Score=58.35 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
...++.++.|+|++||||||+++.|...+.
T Consensus 2 ~~~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 2 NKTMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCCCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 345667999999999999999999998774
No 216
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.09 E-value=4.8e-06 Score=55.53 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+.+|+|.|..||||||+++.+++.++.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4578999999999999999999999975
No 217
>PLN02796 D-glycerate 3-kinase
Probab=98.08 E-value=2.9e-06 Score=65.22 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL 56 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~ 56 (196)
..|.+|.|.|++||||||+++.|...+. ...++.|++.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 3678899999999999999999998874 2445555554
No 218
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.07 E-value=0.0001 Score=58.68 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+|.+|+++|++||||||.+..||..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999999999766
No 219
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.06 E-value=7.2e-05 Score=59.70 Aligned_cols=27 Identities=41% Similarity=0.733 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+|.+++++|++||||||++..||..+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999888764
No 220
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00016 Score=55.03 Aligned_cols=101 Identities=29% Similarity=0.376 Sum_probs=63.3
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh---C-CcEecHHHHHHHHHHc-CCcchHHHHH-HHH-cCCCCCHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---G-YTHLSAGDLLRAEIKS-GSENGTMIQN-MIK-EGKIVPSEVTIKLLQ 90 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~---~-~~~~~~~d~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~ 90 (196)
..+|.+|+++|..|+||||-..+||..+ | -+.+...|.+|...-. -..|++...- .+. ....-|..+..+.+.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 4568999999999999999999999887 3 3566777888875221 1111111110 011 112345567778887
Q ss_pred HHHHhcCCCeEEEeccCCCHHHHHHHHhh
Q 029252 91 KAMEESGNDKFLIDGFPRNEENRAAFEAV 119 (196)
Q Consensus 91 ~~l~~~~~~~~iidg~~~~~~~~~~~~~~ 119 (196)
.+..+ ....+++|-..+.++....+.++
T Consensus 216 ~Akar-~~DvvliDTAGRLhnk~nLM~EL 243 (340)
T COG0552 216 AAKAR-GIDVVLIDTAGRLHNKKNLMDEL 243 (340)
T ss_pred HHHHc-CCCEEEEeCcccccCchhHHHHH
Confidence 76653 47788899766665555444443
No 221
>PRK10867 signal recognition particle protein; Provisional
Probab=98.04 E-value=5.9e-05 Score=60.20 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+|.+|+++|++||||||.+..||..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999888888755
No 222
>PRK06620 hypothetical protein; Validated
Probab=98.04 E-value=0.00021 Score=51.94 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
..++|.|+||||||++++.+++..+..++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 568999999999999999998887765554
No 223
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.04 E-value=5.7e-05 Score=64.67 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
..|..++|.||||||||++|+.++..++..++.
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~ 517 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIA 517 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 445679999999999999999999998765553
No 224
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=6.8e-06 Score=62.20 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL 56 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~ 56 (196)
.+.+|+|.||+|||||-+|-.||++++..+|+.|...
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ 38 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ 38 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh
Confidence 4678999999999999999999999999999987653
No 225
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.03 E-value=5.1e-06 Score=65.41 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG 53 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~ 53 (196)
|..|+|.|||||||||+|+.|++.++.+++..|
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 577999999999999999999999987766654
No 226
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.02 E-value=0.00014 Score=59.52 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
..|..++|.||||||||++++.++...+..++.
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~ 118 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS 118 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 445679999999999999999999998866554
No 227
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.02 E-value=5.3e-06 Score=59.21 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=22.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++-+++|.|||||||||+.+.| +.|
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRcl-N~L 51 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCL-NGL 51 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH-HCC
Confidence 346688999999999999999998 444
No 228
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.02 E-value=1.3e-05 Score=64.10 Aligned_cols=27 Identities=37% Similarity=0.628 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..|.+|+++|++||||||++..|+..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999999877
No 229
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.01 E-value=7.3e-05 Score=60.81 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
..|..++|.||||+|||++++.+++.++.
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 34667999999999999999999998753
No 230
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=4e-05 Score=60.34 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..|.+|+++|++|+||||.+..||..+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999865
No 231
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.01 E-value=6.6e-06 Score=63.63 Aligned_cols=41 Identities=34% Similarity=0.656 Sum_probs=32.7
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRA 58 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~--~~~~d~~~~ 58 (196)
...|..+.|.||||+|||.+|+.+++.++..+ ++..++..+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 45678899999999999999999999998654 455555433
No 232
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.00 E-value=5.2e-06 Score=65.22 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL 56 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~ 56 (196)
.+|.+|.|.|++||||||+++.|...+. ...++.||+.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 3678999999999999999999987663 3456666655
No 233
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00012 Score=59.82 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
...+..+++.||||+|||++|+.++..++..+++
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 3455689999999999999999999987766554
No 234
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.99 E-value=7.9e-06 Score=61.23 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+...-+++.||||+||||+|+.+++.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999865
No 235
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=0.00014 Score=57.15 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+.+|+|.|++||||||++..|+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999766
No 236
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.97 E-value=8.6e-06 Score=56.94 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC--CcEecH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA 52 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~ 52 (196)
+.++|.|+|||||||+|..++.+++ ..++..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 4689999999999999999999876 344443
No 237
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.96 E-value=0.00067 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+++.||||+||||+++.+++.+
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999887
No 238
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.96 E-value=1.4e-05 Score=53.74 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
....++|.|+||+||||+++.+++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999987
No 239
>PRK12377 putative replication protein; Provisional
Probab=97.96 E-value=0.00042 Score=51.42 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~~ 59 (196)
..++|.|+||+|||++|..+++.+ + ..+++..+++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 578999999999999999999887 2 3456666666544
No 240
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.96 E-value=8.7e-06 Score=58.26 Aligned_cols=25 Identities=32% Similarity=0.600 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
|.+|+++||+|+||||.+.+||.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 6789999999999999999999876
No 241
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.95 E-value=1.3e-05 Score=63.50 Aligned_cols=40 Identities=23% Similarity=0.465 Sum_probs=31.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLR 57 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~--~~~~d~~~ 57 (196)
...|..|+|.||||+|||++|+.+++.++..+ ++..++..
T Consensus 162 ~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 162 IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34567899999999999999999999987544 44444443
No 242
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.94 E-value=1.4e-05 Score=63.27 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
....|..++|.||||||||++++.++..++..++.
T Consensus 175 Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 175 GIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 34467789999999999999999999998765543
No 243
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.94 E-value=1.4e-05 Score=52.43 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=26.9
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+|.++.+.|+||+|||.+++.||+.+
T Consensus 48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 356788999999999999999999999985
No 244
>CHL00176 ftsH cell division protein; Validated
Probab=97.94 E-value=0.0004 Score=58.28 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
..+.-++|.||||+|||++|+.++...+.+++.
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~ 246 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFS 246 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 345679999999999999999999998866554
No 245
>PF13245 AAA_19: Part of AAA domain
Probab=97.93 E-value=1.4e-05 Score=48.00 Aligned_cols=25 Identities=40% Similarity=0.608 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChH-HHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKG-TQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKs-Tla~~L~~~~ 45 (196)
..+.+|.|+|||||| |+++.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 466788999999999 5555555444
No 246
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=6e-05 Score=63.33 Aligned_cols=128 Identities=15% Similarity=0.156 Sum_probs=68.6
Q ss_pred ccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH--HHHHHHHHHcCC-cchHHHHHHH-----------------
Q 029252 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEIKSGS-ENGTMIQNMI----------------- 74 (196)
Q Consensus 15 ~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~--~d~~~~~~~~~~-~~~~~~~~~~----------------- 74 (196)
.+.-.-|+-++|+||||+|||-||+++|..-+.+++++ .+++.-....+. .....+...-
T Consensus 338 ~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~ 417 (774)
T KOG0731|consen 338 ELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGR 417 (774)
T ss_pred HcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccc
Confidence 34445577899999999999999999999988888763 232222111111 1111111100
Q ss_pred Hc-C--CCCCHHHHHHHHHHHHHhcC----CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252 75 KE-G--KIVPSEVTIKLLQKAMEESG----NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (196)
Q Consensus 75 ~~-~--~~~~~~~~~~~~~~~l~~~~----~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 143 (196)
.+ | .....+-..+-+...+-+-+ ...+|+.+....++..+.-.- +-..+|..|+++.|...-+..+.+
T Consensus 418 ~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~all-rpGRfdr~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 418 KRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALL-RPGRFDRQIQIDLPDVKGRASILK 492 (774)
T ss_pred cccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhc-CCCccccceeccCCchhhhHHHHH
Confidence 01 1 11111111222222222212 455777765544444333222 566788899999987766666654
No 247
>PHA03133 thymidine kinase; Provisional
Probab=97.92 E-value=0.00094 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
..|.|.|+.|.||||+++.+...++
T Consensus 41 ~rvYlDG~~GvGKTTt~~~l~~a~~ 65 (368)
T PHA03133 41 LRIYVDGPHGLGKTTTAAALAAALG 65 (368)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHhhC
Confidence 5799999999999999988888775
No 248
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.92 E-value=1.3e-05 Score=55.97 Aligned_cols=22 Identities=36% Similarity=0.770 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 029252 24 VFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~ 45 (196)
|+|+|+||+||||+++.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7999999999999999999988
No 249
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00057 Score=55.14 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
+..++++||+|+||||+|+.+++.++.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 457899999999999999999999875
No 250
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=6e-05 Score=61.52 Aligned_cols=45 Identities=27% Similarity=0.537 Sum_probs=35.0
Q ss_pred Cchhhhh--cccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 7 TPVKEAD--ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 7 ~~~~~~~--~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
.|++.++ ....-..|.-|+|+||||||||-+|+++|+.-+..+++
T Consensus 529 ~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFis 575 (802)
T KOG0733|consen 529 APIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFIS 575 (802)
T ss_pred hhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEe
Confidence 3444432 45555667889999999999999999999988776665
No 251
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.91 E-value=3.7e-05 Score=55.35 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.-++|.||+|+||+|+.++|.+.++.
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~ 63 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGG 63 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCC
Confidence 77999999999999999999999973
No 252
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.91 E-value=1.2e-05 Score=61.54 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.-|+|.|+||+||||+++.|+++++..++
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 45999999999999999999999987654
No 253
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.90 E-value=0.00028 Score=49.02 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=69.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCC---CC--------------H
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKI---VP--------------S 82 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------~ 82 (196)
+|+|+|..+|||.|++..|.++++. .++...+.++..+.... +..+...+..+.+ .+ .
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~--gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp 78 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEH--GLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 78 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHh--ChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence 5899999999999999999999874 25666666666544311 1111111111110 00 0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
..+...+.. ..+...|||.+. +.......|.. ....-...|-+.+++++..+|.-..
T Consensus 79 ~~F~r~~~~---~~~~~v~iIsD~-Rr~~dv~~f~~-~~g~~~~~VRV~AseetR~~Rgw~F 135 (182)
T TIGR01223 79 GFFCRKIVE---GISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVF 135 (182)
T ss_pred cHHHHHHHh---ccCCCEEEEeCC-CcccHHHHHHH-HcCCceEEEEEecCHHHHHHHHHhc
Confidence 111222222 112557788875 55667777777 4434446899999999999998655
No 254
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.90 E-value=1.1e-05 Score=55.41 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
...++-.|.|+|||||||||+.+.++.-.
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34456789999999999999999998743
No 255
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.90 E-value=1.1e-05 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=20.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 029252 24 VFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
|+|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987653
No 256
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.89 E-value=1.3e-05 Score=58.48 Aligned_cols=27 Identities=37% Similarity=0.461 Sum_probs=23.4
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.-..+-++.|.|||||||||+.+.++-
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344668999999999999999999985
No 257
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.89 E-value=1.7e-05 Score=62.31 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
..|..++|.||||+|||++++.+++.++..++
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~ 185 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFI 185 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCCCCEE
Confidence 44677999999999999999999999876544
No 258
>PF05729 NACHT: NACHT domain
Probab=97.89 E-value=1.4e-05 Score=55.31 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+++|.|.+|+||||+++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 368999999999999999999877
No 259
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.89 E-value=6.4e-05 Score=55.08 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
+++..++|.|+||||||+++.+++-
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~ 41 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLY 41 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHH
Confidence 4568999999999999999988663
No 260
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.88 E-value=1.4e-05 Score=57.99 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
-.+.-+++|.|||||||||+...++-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34567899999999999999998864
No 261
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.88 E-value=1.6e-05 Score=61.63 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
..-.++.||||+||||+|+.++...+..+.
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~ 77 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFE 77 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceE
Confidence 345789999999999999999999876544
No 262
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.88 E-value=7.4e-06 Score=53.88 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 24 VFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
++|.|+||+||||+++.|++.++..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f 27 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSF 27 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--E
T ss_pred EeeECCCccHHHHHHHHHHHHcCCce
Confidence 68999999999999999999998544
No 263
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.88 E-value=1.5e-05 Score=50.94 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIV 42 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~ 42 (196)
...+++|.|+|||||||+++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35789999999999999999987
No 264
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=6.4e-05 Score=56.86 Aligned_cols=36 Identities=22% Similarity=0.484 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~ 55 (196)
+-++|+|.|++|||||-|+--||.+|+..+|+.|.+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm 41 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM 41 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence 457999999999999999999999999999887553
No 265
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.87 E-value=1.8e-05 Score=51.97 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
+...+|++.|.-||||||+++.+++.++.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34578999999999999999999999875
No 266
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=97.87 E-value=0.0008 Score=50.28 Aligned_cols=123 Identities=20% Similarity=0.185 Sum_probs=59.5
Q ss_pred cCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcC-CcchHHHHH---HHHcCCCCCHHH--H-----------HHH
Q 029252 28 GGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSG-SENGTMIQN---MIKEGKIVPSEV--T-----------IKL 88 (196)
Q Consensus 28 G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~--~-----------~~~ 88 (196)
|+.|.||||+++.+++... ..++...+.+..+-.-. +..-+.+.+ ....|..-..+. . ...
T Consensus 1 G~~GvGKTT~~~~l~~~~~~~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~~~r~~~G~~s~~~as~~~~~~Q~~fatP~~~ 80 (281)
T PF00693_consen 1 GAMGVGKTTTLKALAEALPAGDPVLYFPEPMAYWRTVFGTDVIKGIYEAQKRKDRGEISSEEASAIMASCQMKFATPYLA 80 (281)
T ss_dssp SSTTSSHHHHHHHHHHCCTSSCCEEEE---HHHHHTCSSSSHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHccCCCCCeEEecccHHHHHHHhhHHHHHHHHHHHhHhhccCcCccHHHHHHHHHHHHhcchHHH
Confidence 8899999999999999874 34555445544442222 222233332 223333321110 0 111
Q ss_pred HHHHHHh------------cCCCeEEEeccCCCHH----------------HHHHHHh-h-cCCCCcEEEEEEcCHHHHH
Q 029252 89 LQKAMEE------------SGNDKFLIDGFPRNEE----------------NRAAFEA-V-TKIEPEFVLFFDCSEEEME 138 (196)
Q Consensus 89 ~~~~l~~------------~~~~~~iidg~~~~~~----------------~~~~~~~-~-~~~~~~~~i~l~~~~~~~~ 138 (196)
+...+.. .+...+|+|.+|.... ..-.+.. + ...+-+-+|.++.+.++..
T Consensus 81 ~~~~i~~~~~~~~~~~~~~~pd~~~ifDRHplAA~vcFPlary~~G~ls~~~li~lla~~p~~~pG~niVl~~L~~~E~~ 160 (281)
T PF00693_consen 81 LHARISRLCGPEAVPPAGPSPDVWLIFDRHPLAATVCFPLARYLLGDLSFEDLISLLATFPPEPPGTNIVLMTLPEEEHL 160 (281)
T ss_dssp HHHHHCCTSEEEEECTTSSS-SEEEEEES-THHHHTHHHHHHHHTTSS-HHHHHHHHTTS----TTEEEEEEE--HHHHH
T ss_pred HHHHHHHhcCCccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHH
Confidence 2222211 1134578897654321 1111111 0 2233455888999999999
Q ss_pred HHHhhccCCCCCCc
Q 029252 139 RRILNRNQGREDDN 152 (196)
Q Consensus 139 ~R~~~R~~~r~~~~ 152 (196)
+|+.+| +|+.+.
T Consensus 161 rRl~~R--~R~gE~ 172 (281)
T PF00693_consen 161 RRLKAR--GRPGER 172 (281)
T ss_dssp HHHHHT--STTT-S
T ss_pred HHHHHc--CCCccc
Confidence 999999 666654
No 267
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.87 E-value=0.0011 Score=53.84 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=83.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
...+.+|++.|..+|||....+.|.+.++-..+.+-.+ ..+... +.....+.+.-...+
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~-------~~Pt~~--------------E~~~~~lwRf~~~lP 354 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPI-------AAPTDE--------------EKAQHYLWRFWRHIP 354 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeC-------CCcCHH--------------HHcCcHHHHHHHhCC
Confidence 45689999999999999999999999986433322000 111110 011111222222222
Q ss_pred --CCeEEEeccC-------------CCHH------HHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc---cCCCCCC
Q 029252 98 --NDKFLIDGFP-------------RNEE------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR---NQGREDD 151 (196)
Q Consensus 98 --~~~~iidg~~-------------~~~~------~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r~~~ 151 (196)
+...|+|++. ...+ +...|++. .....-+-|||.++.++..+|+..| ...+-..
T Consensus 355 ~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~WK~ 434 (493)
T TIGR03708 355 RRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKRYKI 434 (493)
T ss_pred CCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccCCcC
Confidence 5666666421 1111 11222221 4445557999999999999999999 2333445
Q ss_pred cHHHHHH--HHHHHHhcchhHHHHHH-hcCcEEEEeCCC
Q 029252 152 NVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKVIFCS 187 (196)
Q Consensus 152 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 187 (196)
+++.+.. +...|......++..-. ...++++|.++.
T Consensus 435 t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~d 473 (493)
T TIGR03708 435 TDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEAND 473 (493)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCC
Confidence 5555444 34445444444443322 234899999875
No 268
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.86 E-value=2.1e-05 Score=64.17 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
...+++|.|||||||||..+.|++.++..+.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 4568999999999999999999999987554
No 269
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.84 E-value=1.9e-05 Score=59.16 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.-++|.|+||+|||++|+.+++.++..++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 45779999999999999999998886544
No 270
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.84 E-value=2.4e-05 Score=59.42 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~ 55 (196)
+++|+|.||+|||||.+|-.||++ +..+++.|..
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 358999999999999999999999 5588887654
No 271
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.83 E-value=1.9e-05 Score=56.71 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
+|+|.||+||||||+++.+...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999888774
No 272
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.83 E-value=2.1e-05 Score=55.74 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 029252 24 VFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++|.|+||||||+++..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999886643
No 273
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=4.8e-05 Score=58.81 Aligned_cols=113 Identities=26% Similarity=0.443 Sum_probs=67.5
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh---CC-cEecHHHHHHHHHHcCCcchHHHHHHHHcCCC--------CCHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKI--------VPSEV 84 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~---~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 84 (196)
...+|.+|.++|.-||||||.|-+||-.+ |+ +.+.+.|.+|... +.+.-....+.+.. -|..+
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA-----fDQLkqnA~k~~iP~ygsyte~dpv~i 171 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA-----FDQLKQNATKARVPFYGSYTEADPVKI 171 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch-----HHHHHHHhHhhCCeeEecccccchHHH
Confidence 45578999999999999999999999877 33 3444445555431 11111112221111 12223
Q ss_pred HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhh----cCCCCcEE-EEEEcCHH
Q 029252 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV----TKIEPEFV-LFFDCSEE 135 (196)
Q Consensus 85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~----~~~~~~~~-i~l~~~~~ 135 (196)
...-+.+ ..+..-..+|+|...+...+...+.++ ....|+.+ +++|.+--
T Consensus 172 a~egv~~-fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 172 ASEGVDR-FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG 226 (483)
T ss_pred HHHHHHH-HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 3333333 233347778899887777777777665 56677774 45577743
No 274
>COG4240 Predicted kinase [General function prediction only]
Probab=97.82 E-value=3.1e-05 Score=55.76 Aligned_cols=45 Identities=36% Similarity=0.393 Sum_probs=35.0
Q ss_pred cccCCCCCcEEEEEcCCCCChHHHHHHHHHHh---C---CcEecHHHHHHH
Q 029252 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---G---YTHLSAGDLLRA 58 (196)
Q Consensus 14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~---~---~~~~~~~d~~~~ 58 (196)
......+|.++.|.||-||||||++..+...+ + ...++.||++.-
T Consensus 43 ~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlt 93 (300)
T COG4240 43 WAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT 93 (300)
T ss_pred hhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcc
Confidence 34455678999999999999999998887655 2 356788887654
No 275
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00011 Score=61.01 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=34.2
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH--HHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEI 60 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~--~d~~~~~~ 60 (196)
+...+.-|++.||||||||.++..++..++..+++. .+++.+.+
T Consensus 697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 334456799999999999999999999999888873 34444443
No 276
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00075 Score=58.14 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
-+..++++|++|+||||+|+.+++.++.
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 4567899999999999999999999875
No 277
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.82 E-value=3.1e-05 Score=61.87 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=27.7
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
...+..++|.||||||||++++.++..++..++
T Consensus 214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi 246 (438)
T PTZ00361 214 IKPPKGVILYGPPGTGKTLLAKAVANETSATFL 246 (438)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 345678999999999999999999999875544
No 278
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=2.3e-05 Score=55.98 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=24.2
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
+.-....+..+.|||||||||+.+.+ ++++
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~l-NRmn 57 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCL-NRMN 57 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHH-Hhhc
Confidence 33456688999999999999999988 5553
No 279
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.81 E-value=1.8e-05 Score=62.83 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~ 52 (196)
...++|.||||||||++|+.|++.++.+++..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i 139 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIA 139 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence 35689999999999999999999998665543
No 280
>PRK06893 DNA replication initiation factor; Validated
Probab=97.81 E-value=0.00039 Score=51.07 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAG 53 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~-----~~~~~~~~ 53 (196)
.+.++|.|+||+|||++++.+++.+ +..++...
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 4578999999999999999999875 45566654
No 281
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.0014 Score=54.70 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..++++|++|+||||+++.|++.++.
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567899999999999999999999875
No 282
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.80 E-value=2.7e-05 Score=60.12 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
...|+|.|+|||||||+++.|++.++..++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 468999999999999999999999887664
No 283
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.80 E-value=2.3e-05 Score=55.33 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=19.9
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
....+..++|.|++|+||||+++.+.+++.
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345578999999999999999998887763
No 284
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.80 E-value=9.6e-05 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+++..++|.|+||||||++|..++-.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35689999999999999999876543
No 285
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.5e-05 Score=62.64 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=30.2
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
.....+.-.++.||||+||||+..++|+.|++.+.+
T Consensus 230 vGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIyd 265 (457)
T KOG0743|consen 230 VGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYD 265 (457)
T ss_pred cCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEE
Confidence 344456779999999999999999999999976654
No 286
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.79 E-value=1.9e-05 Score=60.64 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
..+-+++|.|||||||||+.+.+|-
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999984
No 287
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.78 E-value=3.1e-05 Score=56.20 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d 54 (196)
|..++|.|+||+||||+|+.|+. ...+++.|.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~ 43 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM 43 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence 57799999999999999999862 345666544
No 288
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=97.78 E-value=8.4e-05 Score=57.70 Aligned_cols=111 Identities=21% Similarity=0.246 Sum_probs=67.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-ND 99 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 99 (196)
..++++.|++|||||++...|.+. +..+++..++.... ++.++... . ..-...-+.+.+...+...+ ..
T Consensus 141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~-----~-~qpsQ~~Fe~~l~~~l~~~~~~~ 210 (345)
T PRK11784 141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLG-----G-PQPSQKDFENLLAEALLKLDPAR 210 (345)
T ss_pred CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCC-----C-CCcchHHHHHHHHHHHHcCCCCC
Confidence 456889999999999999999754 66788887766554 33332111 0 11122334555656565544 46
Q ss_pred eEEEeccCCCHHH----HHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 100 KFLIDGFPRNEEN----RAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 100 ~~iidg~~~~~~~----~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.+++++....+-. ...+..+.. . ..|++++|.+...+|+.+-
T Consensus 211 ~i~vE~Es~~IG~~~lP~~l~~~m~~-~--~~v~i~~~~e~Rv~~l~~~ 256 (345)
T PRK11784 211 PIVVEDESRRIGRVHLPEALYEAMQQ-A--PIVVVEAPLEERVERLLED 256 (345)
T ss_pred eEEEEeccccccCccCCHHHHHHHhh-C--CEEEEECCHHHHHHHHHHH
Confidence 7778863322211 112222111 2 3789999999999999887
No 289
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.0015 Score=53.93 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..+++.|++|+||||+|+.+++.++.
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456899999999999999999998864
No 290
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.78 E-value=3.7e-05 Score=58.88 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~ 48 (196)
.+..++++||||+|||++++.+++.++..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34568999999999999999999998743
No 291
>PRK04328 hypothetical protein; Provisional
Probab=97.77 E-value=0.00011 Score=54.70 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=26.0
Q ss_pred hhhhhcccC--CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 9 VKEADATVT--VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 9 ~~~~~~~~~--~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
++.++..+. -+++..++|.|+||||||+++..++..
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 334444433 235689999999999999999886643
No 292
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.77 E-value=3.5e-05 Score=59.69 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
.+..++|.||||+||||+|+.+++.++..+
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 345689999999999999999999997643
No 293
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.0013 Score=55.84 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..++++|++|+||||+++.|++.++.
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3567889999999999999999999875
No 294
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.77 E-value=0.00035 Score=47.54 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=69.1
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHc--CCcchHHHHHH-HHcCC-C--C-CHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKS--GSENGTMIQNM-IKEGK-I--V-PSEVTIK 87 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~--~~~~~~~~~~~-~~~~~-~--~-~~~~~~~ 87 (196)
...+..+|++.|.|.+|||++|..+.+-.. +.++.+|-+....... ....+...... ...+. + + +..+...
T Consensus 19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~ 98 (205)
T COG3896 19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL 98 (205)
T ss_pred CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence 344568999999999999999999987664 6677775544432111 11111000010 00010 0 0 1111111
Q ss_pred HH---HHHH--HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 88 LL---QKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 88 ~~---~~~l--~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.+ ...+ ....+..+|.|.+..+....--+.+.....+...|=+-+|.|+..+|-..|
T Consensus 99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr 160 (205)
T COG3896 99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRR 160 (205)
T ss_pred HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhc
Confidence 11 1111 111377788888665544333323213333445888899999999998776
No 295
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.76 E-value=3.1e-05 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++|.|+|+.+|||||+++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999877
No 296
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.0014 Score=53.26 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
+.-+++.|++|+||||+|+.+++.++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcC
Confidence 557999999999999999999998864
No 297
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.76 E-value=3.6e-05 Score=44.06 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...+|.|++||||||+..++.--
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999888643
No 298
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.76 E-value=0.00054 Score=46.78 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~ 48 (196)
..+.+.|.|+-.||||||+++|++.+|..
T Consensus 7 F~K~VailG~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 7 FVKTVAILGGESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred hheeeeeecCcccChHHHHHHHHHHhCCC
Confidence 34689999999999999999999999863
No 299
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=3.5e-05 Score=63.85 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=29.6
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
....++++++++||||+|||++++.+|+.++-.++
T Consensus 345 ~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 345 TKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred hccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 34556799999999999999999999999985443
No 300
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.74 E-value=3.2e-05 Score=61.26 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
..++|.||||||||++|+.|++.++.++.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~ 145 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFA 145 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeE
Confidence 57999999999999999999999886554
No 301
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.74 E-value=3.2e-05 Score=58.10 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
+..++|.|++||||||+++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998875
No 302
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.74 E-value=2.2e-05 Score=57.93 Aligned_cols=21 Identities=43% Similarity=0.734 Sum_probs=18.6
Q ss_pred EEcCCCCChHHHHHHHHHHhC
Q 029252 26 VLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 26 i~G~~gsGKsTla~~L~~~~~ 46 (196)
|.||+||||||+++.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999774
No 303
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.73 E-value=5.9e-05 Score=55.16 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=30.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL 56 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~ 56 (196)
...+..++|.|++||||||+++.+++... ..+++..++.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 34567899999999999999999998752 4566665554
No 304
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00039 Score=56.18 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
...-|+-|+++||||+|||-+|+.+|-.-+.+++.
T Consensus 333 GGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~ 367 (752)
T KOG0734|consen 333 GGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY 367 (752)
T ss_pred cCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEe
Confidence 33457889999999999999999999988887765
No 305
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.73 E-value=0.00051 Score=58.95 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=28.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
...+..++|.|+|||||||+++.+++.++..++
T Consensus 209 i~~~~giLL~GppGtGKT~laraia~~~~~~~i 241 (733)
T TIGR01243 209 IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFI 241 (733)
T ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCeEE
Confidence 345678999999999999999999999876544
No 306
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.0022 Score=52.64 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..++++||+|+||||+|+.+++.++.
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567899999999999999999999875
No 307
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.73 E-value=3.3e-05 Score=56.17 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.++-++.|.|.|||||||+++.|+-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 4567899999999999999999985
No 308
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.73 E-value=7.2e-05 Score=55.10 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+++.+++|.|+|||||||++..++..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45689999999999999999998654
No 309
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.72 E-value=3.9e-05 Score=55.10 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
|..|.|.|++||||||+++.+.+.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46799999999999999999988763
No 310
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.00019 Score=56.41 Aligned_cols=109 Identities=28% Similarity=0.418 Sum_probs=60.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh---CC-cEecHHHHHHHHHHcCCcchHHHHHHH--------HcC-CCCCHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKSGSENGTMIQNMI--------KEG-KIVPSEV 84 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~---~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~ 84 (196)
..+|.+|+++|.=||||||.|-+||..| +. +.+...|++|...- ++++..- ..+ ..-|-++
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~------eQL~~La~q~~v~~f~~~~~~~Pv~I 170 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAI------EQLKQLAEQVGVPFFGSGTEKDPVEI 170 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHH------HHHHHHHHHcCCceecCCCCCCHHHH
Confidence 4568999999999999999999999877 32 33333465655311 1222111 111 1123334
Q ss_pred HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhh----cCCCCcE-EEEEEcC
Q 029252 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV----TKIEPEF-VLFFDCS 133 (196)
Q Consensus 85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~----~~~~~~~-~i~l~~~ 133 (196)
....++.+-. ...+.+|+|-..+..-+-..+.++ ....|+. ++++|.-
T Consensus 171 ak~al~~ak~-~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam 223 (451)
T COG0541 171 AKAALEKAKE-EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM 223 (451)
T ss_pred HHHHHHHHHH-cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 4444444332 236888999766554444444433 4455655 4455654
No 311
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00073 Score=52.95 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.++++.||+||||||++..|+..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999766
No 312
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.0025 Score=53.35 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..++++||+|+||||+|+.+|+.++.
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578899999999999999999999875
No 313
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.72 E-value=2.8e-05 Score=60.07 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
+.-++.|.|||||||||+.+.+|-
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999985
No 314
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0025 Score=50.78 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+.-+++.||+|+||||+|+.+++.+..
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456899999999999999999999865
No 315
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.71 E-value=3.7e-05 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
++++|+|.||+||||+...|+++
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHc
Confidence 58999999999999999999875
No 316
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.70 E-value=3.4e-05 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+.|++.|++|||||||++.|...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 35899999999999999999653
No 317
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.70 E-value=4.7e-05 Score=58.74 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..++.+|.|.|+|||||||++..|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999988766
No 318
>PRK04195 replication factor C large subunit; Provisional
Probab=97.70 E-value=5e-05 Score=61.89 Aligned_cols=30 Identities=20% Similarity=0.579 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
+..++|.||||+||||+++.|++.+++.++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~i 68 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVI 68 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 678999999999999999999999986554
No 319
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.69 E-value=7.1e-05 Score=56.79 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+.-+++.|+||+||||+|+.+++.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3469999999999999998888765
No 320
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.69 E-value=5.2e-05 Score=58.32 Aligned_cols=27 Identities=37% Similarity=0.666 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.++++.||+||||||++..|+..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356899999999999999999999876
No 321
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.0017 Score=54.02 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=29.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-------CCcEecHHHHHHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAE 59 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~-------~~~~~~~~d~~~~~ 59 (196)
.++|.|++|+|||.|++.++..+ ...+++..+++...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 48999999999999999999865 23677777776554
No 322
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.68 E-value=4.9e-05 Score=55.97 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+..+|.|+|+||+||||+...|...+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 456899999999999999999999877
No 323
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.0016 Score=56.25 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+.-++|.|++|+||||+++.|++.++.
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3456899999999999999999999974
No 324
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.68 E-value=0.0043 Score=49.57 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh-----C--CcEecHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRAE 59 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~-----~--~~~~~~~d~~~~~ 59 (196)
..++|.|++|+|||++++.+++.+ + ..+++..++....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~ 181 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF 181 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH
Confidence 458999999999999999999865 2 4567777665543
No 325
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.68 E-value=0.00014 Score=54.56 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=52.0
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCC-HHHHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-SEVTIKLLQK 91 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 91 (196)
...+.-+|+++||.||||||-...+-+.+| .-++...|.+.-....... .+.....-. ..-+.+.++.
T Consensus 121 ~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skks-------lI~QREvG~dT~sF~~aLra 193 (353)
T COG2805 121 AESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKS-------LINQREVGRDTLSFANALRA 193 (353)
T ss_pred HhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHh-------hhhHHHhcccHHHHHHHHHH
Confidence 344556899999999999998888888876 3456666665544322111 111111111 1223555666
Q ss_pred HHHhcCCCeEEEeccCCCHHHHHH
Q 029252 92 AMEESGNDKFLIDGFPRNEENRAA 115 (196)
Q Consensus 92 ~l~~~~~~~~iidg~~~~~~~~~~ 115 (196)
++.+ ...+|+-|..+..+....
T Consensus 194 ALRe--DPDVIlvGEmRD~ETi~~ 215 (353)
T COG2805 194 ALRE--DPDVILVGEMRDLETIRL 215 (353)
T ss_pred Hhhc--CCCEEEEeccccHHHHHH
Confidence 6653 445666676666665544
No 326
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.67 E-value=5.9e-05 Score=55.66 Aligned_cols=34 Identities=6% Similarity=0.183 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGD 54 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d 54 (196)
...++|.||+|||||++++.++.... ..++..++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 35789999999999999999988653 45666655
No 327
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.67 E-value=4.7e-05 Score=56.62 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYT 48 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~ 48 (196)
=+++.||||-||||+|..+|+.+|..
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 48999999999999999999999853
No 328
>PRK08116 hypothetical protein; Validated
Probab=97.67 E-value=0.00087 Score=50.43 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~~ 59 (196)
+..++|.|++|+|||.++..+++.+ + ..+++..+++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 3469999999999999999999976 3 3456676666543
No 329
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.67 E-value=0.00051 Score=50.12 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh-------CCcEecHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEI 60 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~-------~~~~~~~~d~~~~~~ 60 (196)
..++|.|++|+|||.|++.+++.+ .+.+++.+++.....
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~ 80 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFA 80 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHH
Confidence 347899999999999999998764 245777777766543
No 330
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00017 Score=52.99 Aligned_cols=54 Identities=17% Similarity=0.371 Sum_probs=37.5
Q ss_pred hcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHHHHHcCCcc
Q 029252 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSEN 66 (196)
Q Consensus 13 ~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~~~~~~~~~~~~ 66 (196)
.....-.+|.-+++.||||+|||.+++.++.+-...++ .-+.++.+....++.+
T Consensus 181 y~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprm 236 (408)
T KOG0727|consen 181 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRM 236 (408)
T ss_pred HHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHH
Confidence 34455667888999999999999999999987755444 3345555544444433
No 331
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.66 E-value=5.7e-05 Score=51.34 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~ 52 (196)
..-++|.|+||+||||+|..|.++ ++..++.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaD 44 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVAD 44 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEEC
Confidence 467999999999999999988765 5555543
No 332
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.66 E-value=6.3e-05 Score=52.66 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
..+++.||+|+|||.+|+.|++.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999873
No 333
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.66 E-value=9.6e-05 Score=54.17 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLL 56 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~-----~~~~~~~~d~~ 56 (196)
...++|.|++|||||++++.+++.. ...+++..+..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 4578999999999999999999876 45667665543
No 334
>PHA02244 ATPase-like protein
Probab=97.66 E-value=3.7e-05 Score=59.69 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d 54 (196)
.-++|.|+||||||++++.++..++.+++.+..
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 347889999999999999999999977765543
No 335
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.66 E-value=6.4e-05 Score=56.61 Aligned_cols=27 Identities=33% Similarity=0.620 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+|+++|++|+||||++..|+..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 446789999999999999999999876
No 336
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.66 E-value=5.6e-05 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++++.|+|||||||++..++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 337
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=5.3e-05 Score=57.27 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~ 52 (196)
+-.|++.||+|||||-+|+.||+.++.++--.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 45699999999999999999999999876544
No 338
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.64 E-value=0.00024 Score=53.25 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSA 52 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~ 52 (196)
++..+++|.|+|||||||+|..++... + ..+++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 356899999999999999999987643 2 455554
No 339
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.0038 Score=52.02 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..+++.||+|+||||+|+.+++.++.
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4567899999999999999999998874
No 340
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.63 E-value=4.5e-05 Score=51.24 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+..+++|.|++||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 45789999999999999999998654
No 341
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.63 E-value=5.8e-05 Score=53.64 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=57.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
....++|.|++||||||+++.|...+. ...+...+...-.........-.... ......+..-..+.+...+..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~lR~-- 99 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRP--GNVEGSGEVTMADLLRSALRM-- 99 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEec--CCCCCCCccCHHHHHHHHhcc--
Confidence 457899999999999999999987663 12222222111100000000000000 000001111224455555542
Q ss_pred CCeEEEeccCCCHHHHHHHHhhcCCCC-cEEEEEEcCHHHHHHHHhhc
Q 029252 98 NDKFLIDGFPRNEENRAAFEAVTKIEP-EFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~R~~~R 144 (196)
...+|+-|.-+..+....+........ .+.-.-..+......|+...
T Consensus 100 ~pd~i~igEir~~ea~~~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~ 147 (186)
T cd01130 100 RPDRIIVGEVRGGEALDLLQAMNTGHPGGMTTIHANSAEEALTRLELL 147 (186)
T ss_pred CCCEEEEEccCcHHHHHHHHHHhcCCCCceeeecCCCHHHHHHHHHHH
Confidence 334455554455554444444333333 33444455667778898877
No 342
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.63 E-value=5.8e-05 Score=62.70 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=29.7
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
.+..++.+++||||-||||||+.+|++-|+.++.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvE 356 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVE 356 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEE
Confidence 3445789999999999999999999999987764
No 343
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0065 Score=49.08 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=30.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh-------CCcEecHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEI 60 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~-------~~~~~~~~d~~~~~~ 60 (196)
..++|.|++|+|||++++.+++.+ ...+++.++++....
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~ 176 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV 176 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 459999999999999999999875 245677777666543
No 344
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.63 E-value=7.1e-05 Score=52.55 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.-.+.-.++++|+|||||||+.+.+....
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34456789999999999999999998755
No 345
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.63 E-value=5.8e-05 Score=55.90 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-+.+.++.|.||.||||||+.+.++.-+
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3456899999999999999999998755
No 346
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=97.63 E-value=0.00054 Score=48.26 Aligned_cols=35 Identities=29% Similarity=0.560 Sum_probs=26.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLR 57 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~------~~~~~~~d~~~ 57 (196)
++.+.|.|++||||+++.+..... ..+++.||+.-
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlm 43 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLM 43 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence 578999999999999999875432 45666777663
No 347
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.62 E-value=0.00013 Score=51.47 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~~ 59 (196)
.+..++|.|++|+|||.+|..++..+ + ..++...+++...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 45779999999999999999999765 2 5677888887765
No 348
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00023 Score=53.34 Aligned_cols=46 Identities=28% Similarity=0.451 Sum_probs=35.3
Q ss_pred ccCchhh--hhcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 5 VETPVKE--ADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 5 ~~~~~~~--~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
+|.|+.- ..+.+.-.+|+-+++.|.||+|||-+|+++|+.-...++
T Consensus 201 vELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 201 VELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred hcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 4555533 345677778899999999999999999999987665433
No 349
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.62 E-value=0.00049 Score=53.33 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=66.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
....|+|+|++||||||+++.|...+. ..++...|...-.+............ ..+......-..+++...+...+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~--~~~~~~~~~~~~~ll~~~LR~~P 236 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLAS--KGGQGRAKVTTQDLIEACLRLRP 236 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEec--CCCCCcCcCcHHHHHHHHhccCC
Confidence 356799999999999999999998775 34444444222111110000000000 00000001112556666665322
Q ss_pred CCeEEEeccCCCHHHHHHHHhhcCCCC-cEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHH
Q 029252 98 NDKFLIDGFPRNEENRAAFEAVTKIEP-EFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRF 160 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~ 160 (196)
. +|+=|.-+..+....+..+....+ ...-.-.-+......|+... ..+....+.+.+...+
T Consensus 237 D--~IivGEiR~~ea~~~l~a~~tGh~G~~tTiHa~s~~~ai~Rl~~~~~~~~~~~~~~~~~~~i 299 (332)
T PRK13900 237 D--RIIVGELRGAEAFSFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYI 299 (332)
T ss_pred C--eEEEEecCCHHHHHHHHHHHcCCCcEEEEEecCCHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 3 444444455554455554333333 23333344556666887755 2233334444554443
No 350
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.62 E-value=4.7e-05 Score=56.06 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEI 60 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~~~~~ 60 (196)
.|+.|++.||||+|||.+|+.|+...+.+++. ...++-+..
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 46789999999999999999999998866554 444554443
No 351
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.61 E-value=6e-05 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++.|.|++||||||++..|.+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.61 E-value=6.4e-05 Score=52.86 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.-.++.+++|.|++||||||+.+.+..
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 345568899999999999999998853
No 353
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.61 E-value=6.4e-05 Score=53.54 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.-..+.+++|.|++||||||+++.++..+
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33456789999999999999999998644
No 354
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.61 E-value=0.0011 Score=56.08 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
+.-++|.|+||+||||+++.++..++..++.
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~ 215 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT 215 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4559999999999999999999999866543
No 355
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.60 E-value=6.5e-05 Score=54.52 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|.|++||||||+++.|+..+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998754
No 356
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.60 E-value=8.2e-05 Score=59.49 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.....++|.|+||+||||+++.+++.++..++
T Consensus 34 ~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~ 65 (413)
T PRK13342 34 GRLSSMILWGPPGTGKTTLARIIAGATDAPFE 65 (413)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34456888999999999999999998875443
No 357
>PHA02624 large T antigen; Provisional
Probab=97.60 E-value=9e-05 Score=60.89 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~ 52 (196)
++..++++.|||||||||+++.|.+.++...+++
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 4557999999999999999999999996555553
No 358
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.60 E-value=6.5e-05 Score=54.62 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.++.|.|++||||||+++.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998654
No 359
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.60 E-value=6.6e-05 Score=54.65 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.++.|.|++||||||+++.|+..+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3456789999999999999999998654
No 360
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.60 E-value=6.4e-05 Score=61.52 Aligned_cols=28 Identities=21% Similarity=0.488 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.+.+++++.||||+||||+++.|++.+.
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3557999999999999999999998774
No 361
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.60 E-value=0.00012 Score=59.67 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEec----HHHHHHHHHHcCCcchHHHHHHHHcCCC---------CC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLS----AGDLLRAEIKSGSENGTMIQNMIKEGKI---------VP 81 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~----~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 81 (196)
+..+++|.|+||+||||++.+++... + ..+++ .+.+.+....-+- .+..+...+.. ..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~----~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGI----DFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCC----ChHHHhhCCcEEEEEcccccCC
Confidence 56789999999999999999988754 2 45555 3444444422222 23333333211 01
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEec
Q 029252 82 SEVTIKLLQKAMEESGNDKFLIDG 105 (196)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~iidg 105 (196)
.+.....+...+.+...+.+|||+
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDs 361 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDS 361 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcC
Confidence 122344444555544567788886
No 362
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0058 Score=44.89 Aligned_cols=145 Identities=13% Similarity=0.110 Sum_probs=80.7
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (196)
...+.+|++.|..++||--..+.+.+.+|- .++.. ..+.. .+.....+.+.+.
T Consensus 71 ~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval----------~aPt~--------------~E~~qwY~qRy~~ 126 (270)
T COG2326 71 TGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVAL----------PAPTD--------------RERGQWYFQRYVA 126 (270)
T ss_pred cCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeec----------CCCCh--------------HhhccHHHHHHHH
Confidence 445688999999999999999999999973 22222 11111 1111222333333
Q ss_pred hcC--CCeEEEec-------------cCCCHHHHHHHHhh--------cCCCCcEEEEEEcCHHHHHHHHhhc---cCCC
Q 029252 95 ESG--NDKFLIDG-------------FPRNEENRAAFEAV--------TKIEPEFVLFFDCSEEEMERRILNR---NQGR 148 (196)
Q Consensus 95 ~~~--~~~~iidg-------------~~~~~~~~~~~~~~--------~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r 148 (196)
..+ +..+|+|. |....++...+.++ ...-.-+-+||.++.++..+|+..| ...+
T Consensus 127 ~lPa~GeiviFdRSwYnr~gVeRVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP~K~ 206 (270)
T COG2326 127 HLPAAGEIVIFDRSWYNRAGVERVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERRNDPLKQ 206 (270)
T ss_pred hCCCCCeEEEechhhccccCeeeccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHhcCHHhc
Confidence 223 66677763 32222222222222 3333446899999999999999999 2223
Q ss_pred CCCcHHHHHHHHHHHHhcchhHHHHHH----hcCcEEEEeCCC
Q 029252 149 EDDNVETIRKRFKVFLESSLPVVQYYE----AKGKVRKVIFCS 187 (196)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~id~~~ 187 (196)
-..++..++.| ..+.+...+..+.+. ..+++++|-++.
T Consensus 207 WKlSp~D~~~r-~~WddYt~A~~em~~~T~T~~APW~vV~add 248 (270)
T COG2326 207 WKLSPMDLESR-DRWDDYTKAKDEMFARTSTPEAPWYVVPADD 248 (270)
T ss_pred cCCCHHHHHHH-HhHHHHHHHHHHHHhccCCCCCCeEEEeCCc
Confidence 34444444442 223333333333342 233788887764
No 363
>PRK10646 ADP-binding protein; Provisional
Probab=97.59 E-value=0.0001 Score=50.31 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+.+|++.|.-|+||||+++.+++.++.
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999999975
No 364
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.59 E-value=7.4e-05 Score=55.98 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..++.+|.|+|+||+||||+...|..+|
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 3467899999999999999999999887
No 365
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.59 E-value=6.1e-05 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+++|.|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998876
No 366
>PRK13768 GTPase; Provisional
Probab=97.58 E-value=7.8e-05 Score=55.61 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++.++++.|++||||||++..++..+
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHH
Confidence 45789999999999999999998766
No 367
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.58 E-value=8.4e-05 Score=56.32 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+.+|+|.||+||||||++..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998765
No 368
>PRK13695 putative NTPase; Provisional
Probab=97.58 E-value=8.2e-05 Score=52.23 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+.|+|.|++||||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987765
No 369
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=7.4e-05 Score=54.07 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.+++|.|++||||||+++.|+..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456889999999999999999998644
No 370
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0048 Score=51.66 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..++++|++|+||||+++.+++.++.
T Consensus 37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 37 LHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567899999999999999999999875
No 371
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.58 E-value=8.2e-05 Score=48.58 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.|+|.|.+||||||+.+.|...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 372
>PRK06526 transposase; Provisional
Probab=97.58 E-value=0.00012 Score=54.48 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRA 58 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~ 58 (196)
.+..++|.||||+|||++|..++... + ..++...+++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 34579999999999999999998764 3 233445454444
No 373
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.58 E-value=7.8e-05 Score=52.00 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.3
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+..+...|+|.|++||||||+.+.+...
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 3344678999999999999999999753
No 374
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.58 E-value=7.6e-05 Score=54.04 Aligned_cols=28 Identities=32% Similarity=0.441 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.++.|.|++||||||+++.|+..+
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999999998654
No 375
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.57 E-value=8.1e-05 Score=55.13 Aligned_cols=29 Identities=31% Similarity=0.663 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
...+|.+|++.|+.||||||++++|..++
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 35578999999999999999999998877
No 376
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.57 E-value=9.1e-05 Score=51.18 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
+++.|.|.+||||||+++.|...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999873
No 377
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.57 E-value=7.7e-05 Score=52.52 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
....++.|.|++||||||+.+.++..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456799999999999999999998644
No 378
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0028 Score=53.21 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..++++|++|+||||+|+.+++.++.
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3456899999999999999999999875
No 379
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.57 E-value=7.7e-05 Score=53.79 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456799999999999999999998754
No 380
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.56 E-value=8e-05 Score=54.05 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.++.|.|++||||||+++.++..+
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998654
No 381
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.56 E-value=8.4e-05 Score=53.87 Aligned_cols=28 Identities=43% Similarity=0.424 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++.+++|.|++||||||+.+.|+..+
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456799999999999999999998654
No 382
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.56 E-value=0.00028 Score=51.91 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
...+++|.|+|||||||+|.+++..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999976554433
No 383
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=9.9e-05 Score=59.79 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..+++.||||+||||+|+.+++.++.
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3456899999999999999999998864
No 384
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=8.3e-05 Score=54.81 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.+++|.|++||||||+++.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998654
No 385
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.011 Score=47.75 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRA 58 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~-----~~~~~~~~d~~~~ 58 (196)
.-++|.|++|+|||++++.++..+ ...+++.+++...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH
Confidence 457899999999999999999875 2456666665443
No 386
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.55 E-value=8.3e-05 Score=55.07 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+++.|+..+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456799999999999999999998644
No 387
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.0047 Score=51.79 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~ 48 (196)
-+.-+++.||+|+||||+|+.+++.++..
T Consensus 37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35569999999999999999999998763
No 388
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=8.7e-05 Score=53.85 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.+++|.|++||||||+++.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998644
No 389
>PRK04296 thymidine kinase; Provisional
Probab=97.55 E-value=9.1e-05 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+..+++++|+||+||||++..++.++
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999998876
No 390
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.55 E-value=8e-05 Score=54.35 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++.+++|.|++||||||+++.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456899999999999999999998644
No 391
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.55 E-value=7.6e-05 Score=55.02 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++.+++|.|++||||||+++.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456789999999999999999998644
No 392
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.54 E-value=9e-05 Score=58.36 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
+|.+|.|+|.+||||||++..|.+.+.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999998875
No 393
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=8.8e-05 Score=54.83 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++-+++|.|++||||||+++.|+.-+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3456799999999999999999998644
No 394
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=5.9e-05 Score=57.93 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAE 59 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~~~~ 59 (196)
++..|++.||||+|||.+|++++++-+..+++ ++.+..++
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 56789999999999999999999999876654 33334344
No 395
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.54 E-value=9.8e-05 Score=50.88 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
+.+++.++|.++||||||..+|.+.+.
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~ 27 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLK 27 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHH
Confidence 357899999999999999999998873
No 396
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=9.7e-05 Score=52.08 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.+..++.|.|++||||||+++.|+..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998543
No 397
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0001 Score=61.21 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCC--cEecH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSA 52 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~--~~~~~ 52 (196)
+...+++++++||||.|||++++.+|+.+|- ..|+.
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSv 471 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSV 471 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEec
Confidence 3456799999999999999999999999984 44444
No 398
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.54 E-value=0.00011 Score=53.18 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=26.4
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.....+++|.+.|++||||||+.+.+.+.++
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455678999999999999999999988754
No 399
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.54 E-value=0.0023 Score=49.53 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~~ 59 (196)
..++|.|++|+|||.++..++..+ + +.+++..+++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 669999999999999999999876 2 4566777766554
No 400
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=8.5e-05 Score=54.19 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.++.|.|++||||||+++.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998654
No 401
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.54 E-value=8.1e-05 Score=54.00 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.++.|.|++||||||+++.|+..+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456789999999999999999998654
No 402
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.54 E-value=9.4e-05 Score=53.63 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.++.|.|++||||||+++.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998754
No 403
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.53 E-value=9.4e-05 Score=54.22 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++.++.|.|++||||||+++.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3466899999999999999999999765
No 404
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.53 E-value=0.00067 Score=53.29 Aligned_cols=116 Identities=23% Similarity=0.152 Sum_probs=57.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (196)
-+++|+|++||||||+++.|.+.++ ..++..+|...-.+..........+..+ +... .-+...+...+..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~ev--g~~~--~~~~~~l~~aLR~- 224 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQI--GRDV--DSFANGIRLALRR- 224 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeeccccccc--CCCc--cCHHHHHHHhhcc-
Confidence 4789999999999999999988763 2355555544433221110000000000 1100 1234555555553
Q ss_pred CCCeEEEeccCCCHHHHHH-HHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252 97 GNDKFLIDGFPRNEENRAA-FEAVTKIEPEFVLFFDCSEEEMERRILN 143 (196)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 143 (196)
.-.+|+-|.-+..+.... +......+..+.-.-.-+......|+..
T Consensus 225 -~PD~I~vGEiRd~et~~~al~aa~TGH~v~tTlHa~s~~~ai~Rl~~ 271 (372)
T TIGR02525 225 -APKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQ 271 (372)
T ss_pred -CCCEEeeCCCCCHHHHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHHH
Confidence 334555555566655543 3222222222222334455566666654
No 405
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.53 E-value=0.00063 Score=52.30 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGD 54 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d 54 (196)
++..++.|.|+|||||||+|..++... + ..+++...
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 456799999999999999988877654 2 34565543
No 406
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=9.7e-05 Score=51.83 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+..+++|.|++||||||+++.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998644
No 407
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.0059 Score=50.80 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+.-+++.||+|+||||+|+.+++.+..
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3567999999999999999999999853
No 408
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.53 E-value=9.4e-05 Score=53.91 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+-+++|.|++||||||+++.|+.-+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998654
No 409
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.53 E-value=8.1e-05 Score=58.76 Aligned_cols=25 Identities=28% Similarity=0.639 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..-|+|.|+||+||||+|+.||+-+
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHH
Confidence 4569999999999999999999876
No 410
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.53 E-value=9.7e-05 Score=53.89 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++.++.|.|++||||||+.+.|+..+
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466799999999999999999998654
No 411
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.52 E-value=9.8e-05 Score=54.47 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++.+++|.|++||||||+++.|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3466899999999999999999998643
No 412
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=9.7e-05 Score=54.59 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.++.|.|++||||||+++.|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456889999999999999999998644
No 413
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=9.8e-05 Score=54.32 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.+.-+++|.|++||||||+++.|+..+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456799999999999999999998755
No 414
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0043 Score=51.93 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..++++|++|+||||+++.+++.++.
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3567899999999999999999998864
No 415
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.52 E-value=0.00011 Score=51.35 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
+++|.|++|||||++|..++...+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~ 24 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG 24 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999987754
No 416
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.52 E-value=0.00011 Score=51.25 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.+..+++|.|++||||||+++.++..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456799999999999999999998754
No 417
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=9e-05 Score=53.69 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.. +++|.|++||||||+++.++..+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 35 89999999999999999998644
No 418
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.51 E-value=0.0001 Score=53.56 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
....+++|.|++||||||+.+.++.-.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456789999999999999999998643
No 419
>PLN03025 replication factor C subunit; Provisional
Probab=97.51 E-value=0.00011 Score=56.68 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+-+++.||||+||||+++.+++.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999999987
No 420
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.0001 Score=54.27 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+-+++|.|++||||||+++.|+..+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998654
No 421
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00015 Score=53.62 Aligned_cols=61 Identities=20% Similarity=0.428 Sum_probs=41.6
Q ss_pred ccCchhhhh--cccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHHHHcCCc
Q 029252 5 VETPVKEAD--ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGSE 65 (196)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~~~~~~~~~~ 65 (196)
+|.|+-.++ -.+.-.+|+-|++.||||+|||-+|+.++++-+..++. -+.++.+.+..+..
T Consensus 193 ve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegar 257 (435)
T KOG0729|consen 193 VELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGAR 257 (435)
T ss_pred HhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHH
Confidence 445543333 23445577889999999999999999999998876653 34555555444433
No 422
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.51 E-value=0.00011 Score=53.89 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++-+++|.|++||||||+++.|+.-.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3456789999999999999999998643
No 423
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.51 E-value=0.0001 Score=53.13 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.++.|.|++||||||+.+.|+..+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998654
No 424
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00043 Score=58.14 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~ 52 (196)
.--|++.||||+|||-+||++|..+...+++.
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL~FlSV 736 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSV 736 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhceeeEEee
Confidence 34699999999999999999999998877763
No 425
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.00011 Score=53.63 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+-+++|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998654
No 426
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.50 E-value=0.0001 Score=54.01 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.+++|.|++||||||+++.|+..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456899999999999999999998654
No 427
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.50 E-value=0.00037 Score=56.89 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=25.4
Q ss_pred hhhhcccC--CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 10 KEADATVT--VKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 10 ~~~~~~~~--~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
+.++..+. -.+...++|.|+|||||||+|..++-
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~ 43 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY 43 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 33444433 34568999999999999999998743
No 428
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.50 E-value=0.00011 Score=51.70 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++.++.|.|++||||||+++.|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3456789999999999999999998754
No 429
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.50 E-value=0.00012 Score=51.38 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.++.|.|++||||||+++.|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3456789999999999999999998754
No 430
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00011 Score=54.93 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++-+++|.|++||||||+++.|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456889999999999999999998643
No 431
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00011 Score=52.56 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.+..++.|.|++||||||+++.|+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4567999999999999999999985
No 432
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.50 E-value=0.00013 Score=51.34 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.0
Q ss_pred CCC-cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKP-TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~-~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++ ..|.+.|+||||||++..++.+.+
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L 37 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRAL 37 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHH
Confidence 345 689999999999999988887776
No 433
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00011 Score=54.40 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+++.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 434
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.49 E-value=0.00044 Score=54.19 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
++.+|+++||.|+||||-..+||.++.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 378999999999999998888988774
No 435
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.49 E-value=0.00013 Score=58.86 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.+..+.+|+||+||||||..+.|++.+|+.++
T Consensus 108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 34578999999999999999999999997665
No 436
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.00012 Score=57.63 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..+++.||+|+||||+|+.+++.++.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4567899999999999999999998863
No 437
>PRK09183 transposase/IS protein; Provisional
Probab=97.49 E-value=0.00023 Score=53.31 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLL 56 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~ 56 (196)
....++|.|+||+|||+++..++... + ..+++..++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 34578899999999999999997653 3 3445555544
No 438
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.49 E-value=0.00012 Score=52.43 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++-+++|.|++||||||+++.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998754
No 439
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.49 E-value=0.00011 Score=53.92 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++-+++|.|++||||||+++.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998643
No 440
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00012 Score=59.37 Aligned_cols=27 Identities=41% Similarity=0.720 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
+|.++.+.||||+|||||.+.|.+++.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHH
Confidence 345667999999999999999999874
No 441
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.48 E-value=0.00011 Score=54.34 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
..+-+++|.|++||||||+++.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999865
No 442
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00013 Score=57.06 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.||+|+||||++.+|+..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999999764
No 443
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00011 Score=50.86 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+-|+++.|++||||||+.+.|...+
T Consensus 33 sV~aGECvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred EecCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence 34456799999999999999999998766
No 444
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.48 E-value=0.00011 Score=67.13 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLR 57 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~~~ 57 (196)
...|.-|++.||||+|||.+|++||...+++++ +..+++.
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 345678999999999999999999999886654 5566654
No 445
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.48 E-value=0.00013 Score=51.56 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++.+++|.|++||||||+++.++..+
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466799999999999999999998654
No 446
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.47 E-value=0.001 Score=51.25 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG 53 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~ 53 (196)
++..++.|.|+|||||||+|..++... + ..+++..
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 356789999999999999999887543 2 4556543
No 447
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.47 E-value=0.00011 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
..+++|+|++||||||+++.++-
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999974
No 448
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.47 E-value=0.00012 Score=53.75 Aligned_cols=28 Identities=36% Similarity=0.436 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++-+++|.|++||||||+++.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456899999999999999999998654
No 449
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.47 E-value=0.00012 Score=54.61 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.++.+++|.|++||||||+++.|+..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45678999999999999999999853
No 450
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.47 E-value=0.00017 Score=48.65 Aligned_cols=29 Identities=34% Similarity=0.491 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
..+.+|++.|.-||||||+++.+++.++.
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45689999999999999999999999973
No 451
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.47 E-value=0.00013 Score=50.67 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++-++.|.|++||||||+.+.++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998643
No 452
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00013 Score=54.08 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++-++.|.|++||||||+++.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998654
No 453
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.47 E-value=0.00011 Score=47.91 Aligned_cols=20 Identities=30% Similarity=0.518 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHH
Q 029252 24 VFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~ 43 (196)
|+|.|.+|+||||+.+.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999985
No 454
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00056 Score=55.60 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
..-+++.|+-|+||||+|+.+|+.++...
T Consensus 38 ~hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 38 AHAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred hhhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 45589999999999999999999998654
No 455
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.46 E-value=0.00013 Score=51.66 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|.|++||||||+++.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 456
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.46 E-value=0.00013 Score=52.67 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|.|++||||||+.+.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 456889999999999999999998643
No 457
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.00013 Score=53.99 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.-.++.++.|.|++||||||+++.|+..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33466789999999999999999998644
No 458
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.46 E-value=0.012 Score=41.84 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
-+..+++.|++|+||||+++.+++.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 457899999999999999999999874
No 459
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.46 E-value=0.00014 Score=52.28 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++-+++|.|++||||||+++.++...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3466899999999999999999998654
No 460
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.46 E-value=0.00017 Score=52.16 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++..++.|.|+||||||++|..++...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999988654
No 461
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.46 E-value=0.00017 Score=55.26 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+|.|.|++||||||++..|+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999998865
No 462
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.46 E-value=0.0001 Score=57.18 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
....|+|.|++||||||+++.|...++
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 357799999999999999999998774
No 463
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=97.46 E-value=0.00011 Score=50.02 Aligned_cols=30 Identities=33% Similarity=0.680 Sum_probs=23.2
Q ss_pred cCCC-CcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252 120 TKIE-PEFVLFFDCSEEEMERRILNRNQGREDD 151 (196)
Q Consensus 120 ~~~~-~~~~i~l~~~~~~~~~R~~~R~~~r~~~ 151 (196)
.... |+++|||++|+++|.+|+.+| ||+.+
T Consensus 63 ~~~~~pdl~IYL~~~~e~~~~RI~kR--gR~~E 93 (146)
T PF01712_consen 63 EIPKSPDLIIYLDASPETCLERIKKR--GREEE 93 (146)
T ss_dssp HCCHH-SEEEEEE--HHHHHHHHHHC--TTGGG
T ss_pred HhhccCCeEEEEeCCHHHHHHHHHHh--CCchh
Confidence 4556 999999999999999999999 77654
No 464
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.46 E-value=0.00013 Score=53.04 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
...-+++|.|++||||||+.+.|+.-+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 456789999999999999999998644
No 465
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.46 E-value=0.00014 Score=49.52 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.+..++.|.|++||||||+++.|+..+
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456789999999999999999998654
No 466
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00013 Score=54.27 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|.|++||||||+++.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456789999999999999999998653
No 467
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.00013 Score=53.46 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.++.|.|++||||||+.+.|+..+
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3456789999999999999999998654
No 468
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.006 Score=51.81 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~ 48 (196)
..+..+++.||+|+||||+|+.+++.+...
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 346778999999999999999999988653
No 469
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.46 E-value=0.00014 Score=53.40 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++-++.|.|++||||||+++.++..+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456899999999999999999998654
No 470
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00012 Score=52.73 Aligned_cols=28 Identities=39% Similarity=0.546 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++.+++|.|++||||||+++.|+..+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 3456799999999999999999998654
No 471
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.45 E-value=0.00013 Score=53.61 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|.|++||||||+++.|+..+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998644
No 472
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.45 E-value=0.00013 Score=54.19 Aligned_cols=27 Identities=37% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.++.|.|++||||||+++.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998654
No 473
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00015 Score=50.78 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.-.+..++.|.|++||||||+.+.++..+
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 33456899999999999999999998754
No 474
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.45 E-value=0.00017 Score=62.06 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
++..+++.||||+||||+|+.+++.++..++
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 4457999999999999999999999975443
No 475
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.45 E-value=0.00014 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...-++.|.|+|||||||+...+|-
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHh
Confidence 4557899999999999999999985
No 476
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.45 E-value=0.00013 Score=54.43 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|.|++||||||+++.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456899999999999999999998754
No 477
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00013 Score=54.60 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++-+++|.|++||||||+++.|+..+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456789999999999999999998543
No 478
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.45 E-value=0.00014 Score=53.48 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++-++.|.|++||||||+++.|+..+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998644
No 479
>PRK10908 cell division protein FtsE; Provisional
Probab=97.44 E-value=0.00014 Score=53.06 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.+++|.|++||||||+++.|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466899999999999999999998654
No 480
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00013 Score=54.49 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
-.++-++.|.|++||||||+++.|+..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 345689999999999999999999964
No 481
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.44 E-value=0.00013 Score=52.18 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.-++|.|+||||||++|+.+..-+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCeEEECCCCCCHHHHHHHHHHhC
Confidence 569999999999999999998755
No 482
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.44 E-value=0.00014 Score=54.89 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=25.6
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+......++.|.|+||||||||++.+.+.+
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344567899999999999999999998876
No 483
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.44 E-value=0.00016 Score=55.69 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..+++.|+||+||||+++.+++.++.
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~ 69 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGA 69 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCc
Confidence 4567888999999999999999998764
No 484
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.44 E-value=0.0055 Score=49.70 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh-----C--CcEecHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRA 58 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~-----~--~~~~~~~d~~~~ 58 (196)
..++|.|++|+|||++++.+++.+ + ..+++..++...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 458999999999999999999876 2 346677666544
No 485
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00014 Score=53.79 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++.+++|.|++||||||+++.|+..+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466899999999999999999998754
No 486
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00014 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++-+++|.|++||||||+++.|+..+
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998654
No 487
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.44 E-value=0.00014 Score=53.29 Aligned_cols=28 Identities=36% Similarity=0.471 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-....++.|.|++||||||+++.|+..+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3456789999999999999999998654
No 488
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.44 E-value=0.00018 Score=52.40 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+..++.|.|+|||||||+|..++...
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456889999999999999999998765
No 489
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.44 E-value=0.00016 Score=55.68 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
...|+|+|++||||||+++.|...+
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999876
No 490
>PRK08181 transposase; Validated
Probab=97.44 E-value=0.00032 Score=52.71 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~~ 59 (196)
....++|.|+||+|||.++..++... + ..+++..+++...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 34569999999999999999998754 3 4566777766654
No 491
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00014 Score=53.47 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.+++|.|++||||||+++.|+..+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456899999999999999999998643
No 492
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00014 Score=54.15 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++-++.|.|++||||||+++.|+..+
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3456789999999999999999998653
No 493
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.43 E-value=0.00015 Score=52.86 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++.++.|.|++||||||+++.|+...
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3466899999999999999999998654
No 494
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.43 E-value=0.00015 Score=52.34 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.++.|.|++||||||+++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456899999999999999999998754
No 495
>PRK06851 hypothetical protein; Provisional
Probab=97.43 E-value=0.00025 Score=55.41 Aligned_cols=28 Identities=36% Similarity=0.591 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.....+++|.|+||+||||+++.+.+.+
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~ 54 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEF 54 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998876
No 496
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.0048 Score=48.84 Aligned_cols=153 Identities=13% Similarity=0.221 Sum_probs=85.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH---HHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLL 89 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 89 (196)
...+.+|+++|.|++|||.++..+.+.+++ .+++.+.+-+........ ...+......+..+..++. ..-+
T Consensus 25 ~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s-~~ff~p~n~~~~~lr~~~a~~~l~D~ 103 (438)
T KOG0234|consen 25 MGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDS-EPFFLPDNAEASKLRKQLALLALNDL 103 (438)
T ss_pred cCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhccccc-ccccccCChhhhhhhHHHHHHHhhhH
Confidence 345789999999999999999999987754 456666555554332211 0000000011111222222 2222
Q ss_pred HHHHHhcCCCeEEEeccCCCHHHHHHHHhhcC-CCCcEEEEE--EcCHHHHHHHH-hhc----cC--C-CCCCcHHHHHH
Q 029252 90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVTK-IEPEFVLFF--DCSEEEMERRI-LNR----NQ--G-REDDNVETIRK 158 (196)
Q Consensus 90 ~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~-~~~~~~i~l--~~~~~~~~~R~-~~R----~~--~-r~~~~~~~~~~ 158 (196)
...+...+++..|.|..+.+...+..+..... .....++|+ -|++..+..+. ..+ .. + +.....+.+.+
T Consensus 104 ~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~dfl~ 183 (438)
T KOG0234|consen 104 LHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDFLK 183 (438)
T ss_pred HHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHHHH
Confidence 33344456899999998888888777766322 122234444 44444444444 435 11 1 22233455666
Q ss_pred HHHHHHhcchhHH
Q 029252 159 RFKVFLESSLPVV 171 (196)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (196)
|+..|...+.|+-
T Consensus 184 ri~~ye~~YePld 196 (438)
T KOG0234|consen 184 RIRNYEKYYEPLD 196 (438)
T ss_pred HHHhhhhccCcCC
Confidence 7888887777773
No 497
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.43 E-value=0.00015 Score=53.07 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++.++.|.|++||||||+++.|+..+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998654
No 498
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.43 E-value=0.00017 Score=56.44 Aligned_cols=26 Identities=38% Similarity=0.677 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+.-+|+|+|++||||||+++.|.+.+
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999876
No 499
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.43 E-value=0.00015 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..-+++|.|++||||||+++.|+..+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998643
No 500
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00013 Score=51.55 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
-...-.+++.|||||||||+.+.+|-
T Consensus 28 ia~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 28 IASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred ecCCCEEEEEcCCCccHHHHHHHHhc
Confidence 34567899999999999999998875
Done!