Query 029252
Match_columns 196
No_of_seqs 132 out of 1272
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:11:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 2.8E-36 9.5E-41 216.8 19.5 175 18-193 26-204 (217)
2 3sr0_A Adenylate kinase; phosp 100.0 1.7E-34 5.7E-39 206.7 19.2 170 22-193 1-195 (206)
3 3gmt_A Adenylate kinase; ssgci 100.0 5.8E-33 2E-37 200.1 20.8 173 21-194 8-221 (230)
4 3tlx_A Adenylate kinase 2; str 100.0 9.4E-30 3.2E-34 187.1 19.1 175 19-193 27-234 (243)
5 3dl0_A Adenylate kinase; phosp 100.0 3E-28 1E-32 176.2 19.3 172 22-193 1-205 (216)
6 3fb4_A Adenylate kinase; psych 100.0 5.8E-28 2E-32 174.7 19.6 172 22-193 1-205 (216)
7 3be4_A Adenylate kinase; malar 100.0 8.1E-28 2.8E-32 174.1 19.4 173 21-193 5-210 (217)
8 1aky_A Adenylate kinase; ATP:A 100.0 2.4E-27 8.4E-32 171.9 20.5 174 20-193 3-210 (220)
9 1e4v_A Adenylate kinase; trans 100.0 1.6E-27 5.5E-32 172.2 18.7 170 23-193 2-206 (214)
10 1ak2_A Adenylate kinase isoenz 100.0 4.3E-27 1.5E-31 172.0 20.7 174 20-193 15-221 (233)
11 1qf9_A UMP/CMP kinase, protein 100.0 5.8E-27 2E-31 166.4 20.9 177 17-193 2-182 (194)
12 2cdn_A Adenylate kinase; phosp 100.0 5.1E-27 1.7E-31 167.9 20.6 173 17-193 16-192 (201)
13 2c95_A Adenylate kinase 1; tra 100.0 1.1E-26 3.8E-31 165.3 20.5 173 20-193 8-184 (196)
14 2xb4_A Adenylate kinase; ATP-b 100.0 1.1E-26 3.6E-31 168.8 18.3 172 22-193 1-215 (223)
15 1ukz_A Uridylate kinase; trans 100.0 6.4E-26 2.2E-30 162.4 22.1 177 16-193 10-192 (203)
16 1tev_A UMP-CMP kinase; ploop, 100.0 4.1E-26 1.4E-30 162.2 21.0 174 20-193 2-185 (196)
17 2bwj_A Adenylate kinase 5; pho 100.0 9.8E-27 3.3E-31 166.0 17.6 173 20-193 11-187 (199)
18 1zd8_A GTP:AMP phosphotransfer 99.9 1E-25 3.5E-30 164.1 19.1 171 20-193 6-205 (227)
19 3cm0_A Adenylate kinase; ATP-b 99.9 1E-25 3.6E-30 159.1 17.7 170 20-193 3-177 (186)
20 1zak_A Adenylate kinase; ATP:A 99.9 1.5E-25 5.1E-30 162.7 16.9 171 20-193 4-201 (222)
21 2bbw_A Adenylate kinase 4, AK4 99.9 1.1E-19 3.9E-24 133.6 20.2 171 20-193 26-225 (246)
22 3lw7_A Adenylate kinase relate 99.8 1.3E-19 4.4E-24 126.4 16.7 160 22-193 2-167 (179)
23 1ly1_A Polynucleotide kinase; 99.8 1.3E-17 4.3E-22 116.8 14.5 136 20-165 1-145 (181)
24 3t61_A Gluconokinase; PSI-biol 99.8 1.8E-17 6.1E-22 118.3 15.4 151 20-193 17-170 (202)
25 4hlc_A DTMP kinase, thymidylat 99.8 3.1E-17 1.1E-21 117.1 15.9 159 20-193 1-191 (205)
26 4eaq_A DTMP kinase, thymidylat 99.8 3.2E-17 1.1E-21 119.2 15.2 162 19-193 24-215 (229)
27 2pbr_A DTMP kinase, thymidylat 99.8 5.4E-17 1.9E-21 114.9 15.5 153 22-193 1-182 (195)
28 2rhm_A Putative kinase; P-loop 99.8 2.7E-17 9.3E-22 116.4 13.4 119 20-144 4-125 (193)
29 3vaa_A Shikimate kinase, SK; s 99.7 1.8E-17 6.3E-22 118.0 11.2 156 20-193 24-186 (199)
30 3kb2_A SPBC2 prophage-derived 99.7 5.4E-17 1.9E-21 112.8 12.7 140 22-193 2-157 (173)
31 1ltq_A Polynucleotide kinase; 99.7 7.2E-17 2.5E-21 121.9 13.9 161 20-192 1-173 (301)
32 2z0h_A DTMP kinase, thymidylat 99.7 2.8E-16 9.6E-21 111.5 16.1 155 22-193 1-182 (197)
33 4edh_A DTMP kinase, thymidylat 99.7 2.1E-16 7.1E-21 113.5 15.3 161 19-193 4-197 (213)
34 3v9p_A DTMP kinase, thymidylat 99.7 3.1E-17 1.1E-21 118.6 11.1 161 20-193 24-217 (227)
35 1nks_A Adenylate kinase; therm 99.7 1.5E-16 5.3E-21 112.4 14.1 160 22-193 2-186 (194)
36 4tmk_A Protein (thymidylate ki 99.7 2.8E-16 9.4E-21 112.7 14.4 159 20-193 2-197 (213)
37 1e6c_A Shikimate kinase; phosp 99.7 8E-16 2.7E-20 106.9 15.6 153 22-193 3-161 (173)
38 1kht_A Adenylate kinase; phosp 99.7 8.5E-18 2.9E-22 118.8 5.4 158 21-193 3-184 (192)
39 3trf_A Shikimate kinase, SK; a 99.7 2.8E-16 9.7E-21 110.5 12.3 156 21-193 5-165 (185)
40 3lv8_A DTMP kinase, thymidylat 99.7 1.8E-16 6E-21 115.3 11.2 166 18-193 24-219 (236)
41 4eun_A Thermoresistant glucoki 99.7 1.3E-15 4.4E-20 108.5 15.2 157 13-193 21-184 (200)
42 1jjv_A Dephospho-COA kinase; P 99.7 9.6E-16 3.3E-20 109.6 14.4 152 21-190 2-180 (206)
43 2iyv_A Shikimate kinase, SK; t 99.7 1.5E-16 5E-21 111.9 9.8 155 21-193 2-159 (184)
44 3hjn_A DTMP kinase, thymidylat 99.7 2.4E-15 8.2E-20 106.8 15.8 155 22-193 1-182 (197)
45 2pt5_A Shikimate kinase, SK; a 99.7 5.2E-16 1.8E-20 107.4 11.9 148 22-193 1-154 (168)
46 3ld9_A DTMP kinase, thymidylat 99.7 1.7E-15 5.8E-20 109.1 14.8 164 13-192 13-206 (223)
47 2wwf_A Thymidilate kinase, put 99.7 2E-17 6.7E-22 118.8 4.5 160 20-193 9-190 (212)
48 1knq_A Gluconate kinase; ALFA/ 99.7 4.1E-15 1.4E-19 103.6 15.9 153 19-193 6-164 (175)
49 2plr_A DTMP kinase, probable t 99.7 5.3E-16 1.8E-20 111.2 11.5 120 20-144 3-143 (213)
50 3a4m_A L-seryl-tRNA(SEC) kinas 99.7 6.1E-16 2.1E-20 114.6 11.6 151 21-192 4-163 (260)
51 2v54_A DTMP kinase, thymidylat 99.7 1.1E-15 3.7E-20 109.0 11.7 156 20-193 3-181 (204)
52 2f6r_A COA synthase, bifunctio 99.7 5E-15 1.7E-19 110.8 15.2 157 18-192 72-258 (281)
53 1nn5_A Similar to deoxythymidy 99.6 5.6E-16 1.9E-20 111.3 8.9 162 19-193 7-191 (215)
54 1zuh_A Shikimate kinase; alpha 99.6 8.5E-16 2.9E-20 106.4 9.5 147 22-193 8-160 (168)
55 1vht_A Dephospho-COA kinase; s 99.6 7E-15 2.4E-19 106.0 14.6 156 20-193 3-185 (218)
56 4i1u_A Dephospho-COA kinase; s 99.6 8.2E-15 2.8E-19 104.3 14.6 154 22-192 10-191 (210)
57 3ake_A Cytidylate kinase; CMP 99.6 1.9E-14 6.3E-19 102.9 14.7 156 22-193 3-199 (208)
58 1via_A Shikimate kinase; struc 99.6 1.6E-15 5.3E-20 105.8 8.6 148 23-193 6-157 (175)
59 2if2_A Dephospho-COA kinase; a 99.6 2.2E-15 7.4E-20 107.6 8.9 153 22-193 2-182 (204)
60 2jaq_A Deoxyguanosine kinase; 99.6 6.3E-15 2.2E-19 105.0 10.8 157 22-193 1-191 (205)
61 3tmk_A Thymidylate kinase; pho 99.6 1.1E-14 3.9E-19 104.4 11.8 161 20-193 4-193 (216)
62 1cke_A CK, MSSA, protein (cyti 99.6 2.8E-14 9.5E-19 103.4 13.5 40 21-60 5-44 (227)
63 3zvl_A Bifunctional polynucleo 99.6 3.5E-14 1.2E-18 111.7 13.8 120 18-163 255-379 (416)
64 3iij_A Coilin-interacting nucl 99.6 9.4E-15 3.2E-19 102.2 9.4 108 20-144 10-117 (180)
65 1y63_A LMAJ004144AAA protein; 99.6 4E-14 1.4E-18 99.4 12.3 113 16-144 5-121 (184)
66 1gvn_B Zeta; postsegregational 99.6 1.7E-13 5.8E-18 102.7 15.1 123 16-144 28-162 (287)
67 2vli_A Antibiotic resistance p 99.6 2.6E-13 8.8E-18 95.0 15.1 149 20-193 4-162 (183)
68 3nwj_A ATSK2; P loop, shikimat 99.6 2.9E-14 9.8E-19 104.6 10.3 113 21-144 48-162 (250)
69 1uf9_A TT1252 protein; P-loop, 99.5 3.9E-14 1.3E-18 100.8 10.6 153 19-192 6-183 (203)
70 2qt1_A Nicotinamide riboside k 99.5 6.2E-15 2.1E-19 105.5 6.1 161 19-193 19-196 (207)
71 1uj2_A Uridine-cytidine kinase 99.5 1.5E-14 5.2E-19 106.5 7.7 131 17-161 18-188 (252)
72 1kag_A SKI, shikimate kinase I 99.5 3.5E-14 1.2E-18 98.6 8.9 152 20-193 3-163 (173)
73 1qhx_A CPT, protein (chloramph 99.5 4.4E-13 1.5E-17 93.4 13.4 120 20-144 2-133 (178)
74 1p5z_B DCK, deoxycytidine kina 99.5 2.7E-14 9.1E-19 105.9 6.3 69 122-193 173-249 (263)
75 2qor_A Guanylate kinase; phosp 99.5 1.1E-13 3.7E-18 98.8 8.6 158 20-192 11-186 (204)
76 4e22_A Cytidylate kinase; P-lo 99.5 7.9E-13 2.7E-17 97.3 13.3 40 20-59 26-65 (252)
77 3fdi_A Uncharacterized protein 99.5 1.1E-12 3.8E-17 93.3 13.1 159 21-193 6-189 (201)
78 2grj_A Dephospho-COA kinase; T 99.5 3.6E-13 1.2E-17 95.1 9.7 42 21-62 12-53 (192)
79 2h92_A Cytidylate kinase; ross 99.5 6.1E-14 2.1E-18 101.1 5.8 160 20-193 2-208 (219)
80 1m7g_A Adenylylsulfate kinase; 99.5 8.9E-14 3E-18 99.8 6.1 113 17-141 21-149 (211)
81 1q3t_A Cytidylate kinase; nucl 99.4 1.9E-12 6.4E-17 94.4 12.6 165 19-193 14-225 (236)
82 2p5t_B PEZT; postsegregational 99.4 4E-13 1.4E-17 99.0 9.0 122 17-144 28-157 (253)
83 2vp4_A Deoxynucleoside kinase; 99.4 3.7E-13 1.3E-17 97.8 8.1 69 121-194 144-216 (230)
84 1ex7_A Guanylate kinase; subst 99.4 8.3E-13 2.8E-17 92.5 8.8 133 23-165 3-152 (186)
85 2yvu_A Probable adenylyl-sulfa 99.4 4E-12 1.4E-16 89.3 12.3 115 17-143 9-132 (186)
86 3hdt_A Putative kinase; struct 99.4 3.3E-11 1.1E-15 86.9 15.4 41 20-61 13-53 (223)
87 3r20_A Cytidylate kinase; stru 99.4 1.9E-11 6.4E-16 88.5 13.8 40 20-59 8-47 (233)
88 2axn_A 6-phosphofructo-2-kinas 99.4 3.1E-12 1.1E-16 103.1 10.8 151 19-170 33-201 (520)
89 3uie_A Adenylyl-sulfate kinase 99.3 3.4E-11 1.2E-15 85.5 12.4 113 18-141 22-140 (200)
90 2ocp_A DGK, deoxyguanosine kin 99.3 1.2E-11 4E-16 90.4 9.8 68 122-192 148-223 (241)
91 2pez_A Bifunctional 3'-phospho 99.3 1.2E-10 4.2E-15 81.1 13.0 113 19-144 3-125 (179)
92 1a7j_A Phosphoribulokinase; tr 99.3 2E-12 6.8E-17 97.0 3.4 38 20-57 4-46 (290)
93 1x6v_B Bifunctional 3'-phospho 99.3 7.3E-11 2.5E-15 96.4 12.3 115 19-143 50-171 (630)
94 1gtv_A TMK, thymidylate kinase 99.2 2.8E-13 9.6E-18 97.1 -2.6 67 123-193 132-204 (214)
95 3tau_A Guanylate kinase, GMP k 99.2 3.4E-11 1.2E-15 86.1 7.3 134 20-164 7-157 (208)
96 1rz3_A Hypothetical protein rb 99.2 8.9E-11 3.1E-15 83.4 8.3 115 18-144 19-164 (201)
97 2j41_A Guanylate kinase; GMP, 99.2 7.5E-12 2.6E-16 89.1 2.4 156 19-192 4-176 (207)
98 2ze6_A Isopentenyl transferase 99.2 7.5E-11 2.6E-15 86.8 7.6 120 22-144 2-138 (253)
99 3tr0_A Guanylate kinase, GMP k 99.2 1.4E-09 4.7E-14 77.2 13.8 135 20-164 6-155 (205)
100 1bif_A 6-phosphofructo-2-kinas 99.1 2.5E-10 8.5E-15 91.2 10.4 148 18-170 36-205 (469)
101 2gks_A Bifunctional SAT/APS ki 99.1 7.4E-10 2.5E-14 89.8 12.5 113 19-142 370-488 (546)
102 3asz_A Uridine kinase; cytidin 99.1 6.1E-10 2.1E-14 79.5 9.1 38 19-56 4-43 (211)
103 1p6x_A Thymidine kinase; P-loo 99.1 1.8E-09 6E-14 82.1 11.7 27 21-47 7-33 (334)
104 3c8u_A Fructokinase; YP_612366 99.1 4.1E-10 1.4E-14 80.4 7.4 134 18-161 19-184 (208)
105 3tqc_A Pantothenate kinase; bi 99.0 5.8E-10 2E-14 84.4 8.0 38 18-55 89-133 (321)
106 3a00_A Guanylate kinase, GMP k 99.0 3.9E-10 1.3E-14 79.1 6.2 135 21-165 1-152 (186)
107 1m8p_A Sulfate adenylyltransfe 99.0 3.6E-09 1.2E-13 86.2 12.5 114 18-142 393-514 (573)
108 3ch4_B Pmkase, phosphomevalona 99.0 6.9E-09 2.3E-13 73.1 11.4 116 20-144 10-147 (202)
109 2bdt_A BH3686; alpha-beta prot 99.0 6.8E-09 2.3E-13 72.8 11.4 114 21-144 2-122 (189)
110 1osn_A Thymidine kinase, VZV-T 99.0 5E-09 1.7E-13 79.7 10.8 28 20-47 11-39 (341)
111 1sq5_A Pantothenate kinase; P- 98.9 2E-08 7E-13 75.8 12.6 36 19-54 78-120 (308)
112 3a8t_A Adenylate isopentenyltr 98.9 3.1E-10 1E-14 86.1 1.0 36 20-55 39-74 (339)
113 3czq_A Putative polyphosphate 98.9 1.5E-08 5.1E-13 75.6 9.9 148 19-188 84-261 (304)
114 1e2k_A Thymidine kinase; trans 98.8 1.9E-08 6.7E-13 76.3 9.6 26 21-46 4-29 (331)
115 1of1_A Thymidine kinase; trans 98.8 3.4E-08 1.2E-12 75.9 10.6 27 20-46 48-74 (376)
116 4gp7_A Metallophosphoesterase; 98.8 6E-07 2E-11 61.9 15.6 136 19-170 7-145 (171)
117 3lnc_A Guanylate kinase, GMP k 98.8 4.4E-09 1.5E-13 76.2 4.5 27 19-45 25-52 (231)
118 3ney_A 55 kDa erythrocyte memb 98.8 1.4E-08 4.8E-13 71.6 6.8 34 13-46 11-44 (197)
119 2jeo_A Uridine-cytidine kinase 98.8 3.7E-08 1.3E-12 72.0 9.0 32 17-48 21-52 (245)
120 1s96_A Guanylate kinase, GMP k 98.7 2.4E-07 8.1E-12 66.5 12.5 135 20-164 15-166 (219)
121 1zp6_A Hypothetical protein AT 98.7 5.9E-08 2E-12 68.0 8.0 116 19-144 7-126 (191)
122 3aez_A Pantothenate kinase; tr 98.6 6.5E-07 2.2E-11 67.7 12.6 28 18-45 87-114 (312)
123 1lvg_A Guanylate kinase, GMP k 98.6 4.1E-07 1.4E-11 64.3 10.5 25 21-45 4-28 (198)
124 3crm_A TRNA delta(2)-isopenten 98.6 1.6E-08 5.6E-13 76.3 2.8 36 20-55 4-39 (323)
125 3cr8_A Sulfate adenylyltranfer 98.5 2.5E-07 8.5E-12 75.0 8.2 113 19-142 367-487 (552)
126 3d3q_A TRNA delta(2)-isopenten 98.5 3.1E-08 1.1E-12 75.3 2.4 36 20-55 6-41 (340)
127 3foz_A TRNA delta(2)-isopenten 98.5 7.9E-08 2.7E-12 72.0 3.7 37 18-54 7-43 (316)
128 3czp_A Putative polyphosphate 98.4 6.4E-07 2.2E-11 71.6 8.3 148 18-187 40-217 (500)
129 3exa_A TRNA delta(2)-isopenten 98.4 9.7E-08 3.3E-12 71.7 3.2 36 20-55 2-37 (322)
130 3czp_A Putative polyphosphate 98.4 6.9E-07 2.4E-11 71.4 7.2 147 19-187 298-474 (500)
131 3rhf_A Putative polyphosphate 98.4 4.1E-06 1.4E-10 61.8 10.7 144 20-187 74-249 (289)
132 1kgd_A CASK, peripheral plasma 98.3 4.1E-07 1.4E-11 63.2 4.1 28 19-46 3-30 (180)
133 4b4t_K 26S protease regulatory 98.3 5.5E-07 1.9E-11 70.7 4.2 36 16-51 201-236 (428)
134 4b4t_L 26S protease subunit RP 98.3 7E-07 2.4E-11 70.2 4.6 36 16-51 210-245 (437)
135 4b4t_M 26S protease regulatory 98.3 6.6E-07 2.3E-11 70.3 4.3 36 16-51 210-245 (434)
136 4b4t_J 26S protease regulatory 98.3 6.1E-07 2.1E-11 69.7 4.1 36 16-51 177-212 (405)
137 1dek_A Deoxynucleoside monopho 98.3 9.4E-07 3.2E-11 64.2 4.8 40 22-61 2-41 (241)
138 3eph_A TRNA isopentenyltransfe 98.3 4.9E-07 1.7E-11 70.1 3.5 34 21-54 2-35 (409)
139 3t15_A Ribulose bisphosphate c 98.3 9E-07 3.1E-11 66.3 4.8 38 18-55 33-72 (293)
140 4b4t_H 26S protease regulatory 98.2 1.2E-06 4.1E-11 69.0 4.1 36 16-51 238-273 (467)
141 4b4t_I 26S protease regulatory 98.2 1.5E-06 5.1E-11 67.9 4.3 36 16-51 211-246 (437)
142 1odf_A YGR205W, hypothetical 3 98.1 1.9E-06 6.7E-11 64.4 4.4 40 17-56 27-74 (290)
143 3ec2_A DNA replication protein 98.1 3.3E-06 1.1E-10 58.5 5.1 40 19-58 36-81 (180)
144 1g8f_A Sulfate adenylyltransfe 98.1 1.6E-06 5.3E-11 69.6 3.5 36 19-54 393-435 (511)
145 2qz4_A Paraplegin; AAA+, SPG7, 98.1 4.1E-06 1.4E-10 61.4 5.0 32 19-50 37-68 (262)
146 1lv7_A FTSH; alpha/beta domain 98.1 4.4E-06 1.5E-10 61.2 5.0 31 20-50 44-74 (257)
147 2qmh_A HPR kinase/phosphorylas 98.1 2E-06 6.9E-11 60.3 2.9 32 20-52 33-64 (205)
148 1kjw_A Postsynaptic density pr 98.0 1.4E-05 4.8E-10 59.8 7.4 129 19-164 103-249 (295)
149 1ye8_A Protein THEP1, hypothet 98.0 3.5E-06 1.2E-10 58.4 3.8 26 22-47 1-26 (178)
150 3h4m_A Proteasome-activating n 98.0 4.7E-06 1.6E-10 61.9 4.6 32 19-50 49-80 (285)
151 3cf0_A Transitional endoplasmi 98.0 4.8E-06 1.7E-10 62.6 4.6 41 19-59 47-89 (301)
152 3b9p_A CG5977-PA, isoform A; A 98.0 6E-06 2E-10 61.7 4.7 31 20-50 53-83 (297)
153 1tue_A Replication protein E1; 98.0 5.6E-06 1.9E-10 58.4 3.9 30 21-50 58-87 (212)
154 2ga8_A Hypothetical 39.9 kDa p 98.0 1.3E-06 4.3E-11 66.8 0.6 34 16-49 19-52 (359)
155 3eie_A Vacuolar protein sortin 98.0 7.5E-06 2.6E-10 62.1 4.8 36 20-55 50-87 (322)
156 2x8a_A Nuclear valosin-contain 97.9 9.7E-06 3.3E-10 60.1 5.0 29 21-49 44-72 (274)
157 1d2n_A N-ethylmaleimide-sensit 97.9 8.3E-06 2.8E-10 60.3 4.6 33 18-50 61-93 (272)
158 1g41_A Heat shock protein HSLU 97.9 4.7E-06 1.6E-10 65.7 3.3 33 20-52 49-81 (444)
159 1z6g_A Guanylate kinase; struc 97.9 5.3E-06 1.8E-10 59.4 3.3 27 19-45 21-47 (218)
160 3cf2_A TER ATPase, transitiona 97.9 3E-05 1E-09 65.5 8.0 40 17-56 507-548 (806)
161 3hws_A ATP-dependent CLP prote 97.9 5.9E-06 2E-10 63.7 3.6 31 20-50 50-80 (363)
162 1jbk_A CLPB protein; beta barr 97.9 9.4E-06 3.2E-10 56.2 4.3 27 19-45 41-67 (195)
163 1xwi_A SKD1 protein; VPS4B, AA 97.9 9.7E-06 3.3E-10 61.5 4.6 30 20-49 44-74 (322)
164 1znw_A Guanylate kinase, GMP k 97.9 7.7E-06 2.6E-10 58.0 3.8 30 17-46 16-45 (207)
165 1svm_A Large T antigen; AAA+ f 97.9 1.2E-05 4.1E-10 62.2 4.9 35 17-51 165-199 (377)
166 3cf2_A TER ATPase, transitiona 97.9 6.9E-06 2.4E-10 69.2 3.7 36 16-51 233-268 (806)
167 2w58_A DNAI, primosome compone 97.9 2E-05 6.7E-10 55.5 5.4 37 22-58 55-96 (202)
168 1in4_A RUVB, holliday junction 97.9 1.1E-05 3.8E-10 61.5 4.3 28 21-48 51-78 (334)
169 1xjc_A MOBB protein homolog; s 97.9 1.2E-05 4E-10 55.2 4.0 25 21-45 4-28 (169)
170 2qp9_X Vacuolar protein sortin 97.9 1.2E-05 4.1E-10 61.8 4.5 36 20-55 83-120 (355)
171 1ixz_A ATP-dependent metallopr 97.9 1.7E-05 5.9E-10 57.9 5.0 28 21-48 49-76 (254)
172 3syl_A Protein CBBX; photosynt 97.9 1.2E-05 4.2E-10 60.3 4.3 27 19-45 65-91 (309)
173 1ofh_A ATP-dependent HSL prote 97.8 1.4E-05 4.7E-10 59.9 4.5 31 20-50 49-79 (310)
174 2p65_A Hypothetical protein PF 97.8 9.8E-06 3.4E-10 55.9 3.4 27 19-45 41-67 (187)
175 1np6_A Molybdopterin-guanine d 97.8 1.7E-05 5.7E-10 54.8 4.2 26 20-45 5-30 (174)
176 2kjq_A DNAA-related protein; s 97.8 1.2E-05 4.2E-10 54.0 3.4 26 20-45 35-60 (149)
177 3d8b_A Fidgetin-like protein 1 97.8 1.7E-05 5.8E-10 61.0 4.6 31 20-50 116-146 (357)
178 2r62_A Cell division protease 97.8 5.6E-06 1.9E-10 61.0 1.9 30 21-50 44-73 (268)
179 1htw_A HI0065; nucleotide-bind 97.8 1.6E-05 5.5E-10 54.0 3.9 27 19-45 31-57 (158)
180 3bos_A Putative DNA replicatio 97.8 1.6E-05 5.3E-10 57.3 4.0 27 20-46 51-77 (242)
181 1um8_A ATP-dependent CLP prote 97.8 1.2E-05 4.1E-10 62.2 3.6 30 21-50 72-101 (376)
182 2ce7_A Cell division protein F 97.8 2.4E-05 8.4E-10 62.3 5.2 32 20-51 48-79 (476)
183 1rj9_A FTSY, signal recognitio 97.8 2E-05 6.7E-10 59.3 4.3 26 20-45 101-126 (304)
184 2v9p_A Replication protein E1; 97.8 2E-05 6.9E-10 59.2 4.1 33 17-49 122-154 (305)
185 2c9o_A RUVB-like 1; hexameric 97.8 2.9E-05 1E-09 61.7 5.1 27 20-46 62-88 (456)
186 1iy2_A ATP-dependent metallopr 97.7 3.3E-05 1.1E-09 57.3 5.1 27 22-48 74-100 (278)
187 2eyu_A Twitching motility prot 97.7 2.3E-05 7.9E-10 57.7 4.1 28 18-45 22-49 (261)
188 3e70_C DPA, signal recognition 97.7 2.5E-05 8.7E-10 59.3 4.4 27 19-45 127-153 (328)
189 1l8q_A Chromosomal replication 97.7 3.7E-05 1.3E-09 58.2 5.3 38 20-57 36-78 (324)
190 2h17_A ADP-ribosylation factor 97.7 1.5E-05 5.1E-10 55.0 2.9 43 1-43 1-43 (181)
191 3tif_A Uncharacterized ABC tra 97.7 1.7E-05 5.8E-10 57.5 3.2 29 17-45 27-55 (235)
192 2f1r_A Molybdopterin-guanine d 97.7 9.2E-06 3.2E-10 55.9 1.6 24 22-45 3-26 (171)
193 3pfi_A Holliday junction ATP-d 97.7 2.9E-05 9.8E-10 59.1 4.4 30 21-50 55-84 (338)
194 1sxj_A Activator 1 95 kDa subu 97.7 3.1E-05 1.1E-09 62.5 4.9 31 20-50 76-106 (516)
195 2ehv_A Hypothetical protein PH 97.7 2.3E-05 7.7E-10 56.9 3.6 24 19-42 28-51 (251)
196 3b9q_A Chloroplast SRP recepto 97.7 3.4E-05 1.1E-09 58.0 4.6 27 19-45 98-124 (302)
197 3vfd_A Spastin; ATPase, microt 97.7 3.3E-05 1.1E-09 60.1 4.7 31 20-50 147-177 (389)
198 1njg_A DNA polymerase III subu 97.7 2.9E-05 9.8E-10 55.7 4.0 26 21-46 45-70 (250)
199 2zan_A Vacuolar protein sortin 97.7 3.3E-05 1.1E-09 61.2 4.4 39 20-58 166-207 (444)
200 2i3b_A HCR-ntpase, human cance 97.7 2.8E-05 9.6E-10 54.4 3.6 24 22-45 2-25 (189)
201 1vma_A Cell division protein F 97.7 3.8E-05 1.3E-09 57.8 4.5 27 19-45 102-128 (306)
202 2pcj_A ABC transporter, lipopr 97.7 2.2E-05 7.4E-10 56.5 3.0 27 19-45 28-54 (224)
203 4a74_A DNA repair and recombin 97.7 2.5E-05 8.5E-10 55.9 3.4 27 19-45 23-49 (231)
204 3te6_A Regulatory protein SIR3 97.7 1.7E-05 5.9E-10 59.9 2.5 31 15-45 39-69 (318)
205 2chg_A Replication factor C sm 97.7 2.7E-05 9.2E-10 55.1 3.4 23 23-45 40-62 (226)
206 2cbz_A Multidrug resistance-as 97.7 2.5E-05 8.5E-10 56.7 3.2 28 18-45 28-55 (237)
207 3n70_A Transport activator; si 97.7 3E-05 1E-09 51.8 3.2 24 22-45 25-48 (145)
208 3tvt_A Disks large 1 tumor sup 97.6 6.1E-05 2.1E-09 56.2 5.2 129 18-161 97-244 (292)
209 3uk6_A RUVB-like 2; hexameric 97.6 4.3E-05 1.5E-09 58.8 4.4 27 21-47 70-96 (368)
210 2onk_A Molybdate/tungstate ABC 97.6 3.1E-05 1.1E-09 56.3 3.3 26 19-45 23-48 (240)
211 4fcw_A Chaperone protein CLPB; 97.6 4.4E-05 1.5E-09 57.3 4.3 24 22-45 48-71 (311)
212 1zd9_A ADP-ribosylation factor 97.6 2.8E-05 9.5E-10 54.0 3.0 31 13-43 14-44 (188)
213 2og2_A Putative signal recogni 97.6 4.8E-05 1.6E-09 58.4 4.5 27 19-45 155-181 (359)
214 1c9k_A COBU, adenosylcobinamid 97.6 2.4E-05 8.1E-10 54.1 2.6 24 23-47 1-24 (180)
215 1b0u_A Histidine permease; ABC 97.6 3E-05 1E-09 57.1 3.2 28 18-45 29-56 (262)
216 2h57_A ADP-ribosylation factor 97.6 2.6E-05 8.9E-10 54.2 2.7 44 1-44 1-44 (190)
217 1mv5_A LMRA, multidrug resista 97.6 3.2E-05 1.1E-09 56.3 3.2 28 18-45 25-52 (243)
218 3gfo_A Cobalt import ATP-bindi 97.6 3.1E-05 1E-09 57.4 3.1 27 19-45 32-58 (275)
219 3pvs_A Replication-associated 97.6 3.5E-05 1.2E-09 61.1 3.6 30 21-50 50-79 (447)
220 2w0m_A SSO2452; RECA, SSPF, un 97.6 4.8E-05 1.6E-09 54.5 4.0 27 19-45 21-47 (235)
221 4g1u_C Hemin import ATP-bindin 97.6 3.3E-05 1.1E-09 57.0 3.2 27 19-45 35-61 (266)
222 2olj_A Amino acid ABC transpor 97.6 3.4E-05 1.2E-09 56.8 3.2 27 19-45 48-74 (263)
223 3b85_A Phosphate starvation-in 97.6 3.3E-05 1.1E-09 54.9 3.0 25 20-44 21-45 (208)
224 2cvh_A DNA repair and recombin 97.6 4.4E-05 1.5E-09 54.2 3.7 29 18-46 17-45 (220)
225 2ff7_A Alpha-hemolysin translo 97.6 3.3E-05 1.1E-09 56.4 3.0 27 19-45 33-59 (247)
226 2d2e_A SUFC protein; ABC-ATPas 97.6 4.3E-05 1.5E-09 55.9 3.6 26 19-44 27-52 (250)
227 2ixe_A Antigen peptide transpo 97.6 3.6E-05 1.2E-09 56.9 3.2 27 19-45 43-69 (271)
228 2ghi_A Transport protein; mult 97.6 3.7E-05 1.3E-09 56.5 3.2 28 18-45 43-70 (260)
229 2zu0_C Probable ATP-dependent 97.6 4.7E-05 1.6E-09 56.2 3.8 26 19-44 44-69 (267)
230 2yhs_A FTSY, cell division pro 97.6 6.1E-05 2.1E-09 60.0 4.6 28 18-45 290-317 (503)
231 1sgw_A Putative ABC transporte 97.6 3.1E-05 1.1E-09 55.3 2.7 27 19-45 33-59 (214)
232 3hu3_A Transitional endoplasmi 97.6 5.9E-05 2E-09 60.4 4.6 37 19-55 236-274 (489)
233 2pze_A Cystic fibrosis transme 97.6 3.7E-05 1.3E-09 55.4 3.1 27 19-45 32-58 (229)
234 1vpl_A ABC transporter, ATP-bi 97.6 3.9E-05 1.3E-09 56.3 3.2 28 18-45 38-65 (256)
235 2v1u_A Cell division control p 97.6 6.1E-05 2.1E-09 58.0 4.6 27 19-45 42-68 (387)
236 2xkx_A Disks large homolog 4; 97.6 0.0013 4.3E-08 55.3 12.7 130 18-163 528-674 (721)
237 1ji0_A ABC transporter; ATP bi 97.6 3.6E-05 1.2E-09 55.9 3.0 27 19-45 30-56 (240)
238 1g6h_A High-affinity branched- 97.6 3.7E-05 1.3E-09 56.4 3.0 27 19-45 31-57 (257)
239 2qby_B CDC6 homolog 3, cell di 97.6 7.3E-05 2.5E-09 57.7 4.8 27 19-45 43-69 (384)
240 2dhr_A FTSH; AAA+ protein, hex 97.6 8E-05 2.7E-09 59.7 5.0 30 21-50 64-93 (499)
241 3tqf_A HPR(Ser) kinase; transf 97.6 5.1E-05 1.7E-09 51.9 3.4 32 20-52 15-46 (181)
242 2orw_A Thymidine kinase; TMTK, 97.6 6.3E-05 2.1E-09 52.4 3.9 25 21-45 3-27 (184)
243 3m6a_A ATP-dependent protease 97.6 6.5E-05 2.2E-09 61.0 4.6 30 20-49 107-136 (543)
244 1hqc_A RUVB; extended AAA-ATPa 97.6 4.8E-05 1.7E-09 57.4 3.6 29 21-49 38-66 (324)
245 1ypw_A Transitional endoplasmi 97.6 7E-05 2.4E-09 63.6 4.9 33 18-50 235-267 (806)
246 3u61_B DNA polymerase accessor 97.6 6.1E-05 2.1E-09 57.0 4.1 32 19-50 46-77 (324)
247 2qi9_C Vitamin B12 import ATP- 97.5 4.5E-05 1.5E-09 55.7 3.1 27 19-45 24-50 (249)
248 2yz2_A Putative ABC transporte 97.5 4.8E-05 1.6E-09 56.1 3.2 29 17-45 29-57 (266)
249 2qby_A CDC6 homolog 1, cell di 97.5 7.6E-05 2.6E-09 57.4 4.5 27 19-45 43-69 (386)
250 1oix_A RAS-related protein RAB 97.5 5E-05 1.7E-09 53.0 3.1 24 21-44 29-52 (191)
251 2a5j_A RAS-related protein RAB 97.5 4.5E-05 1.5E-09 53.0 2.8 25 20-44 20-44 (191)
252 1u0j_A DNA replication protein 97.5 8E-05 2.7E-09 54.7 4.2 28 19-46 102-129 (267)
253 3fvq_A Fe(3+) IONS import ATP- 97.5 5.7E-05 1.9E-09 58.0 3.6 27 18-44 27-53 (359)
254 2px0_A Flagellar biosynthesis 97.5 7.1E-05 2.4E-09 56.1 4.0 26 20-45 104-129 (296)
255 2ihy_A ABC transporter, ATP-bi 97.5 4.9E-05 1.7E-09 56.5 3.1 27 19-45 45-71 (279)
256 2nq2_C Hypothetical ABC transp 97.5 5.2E-05 1.8E-09 55.5 3.0 27 19-45 29-55 (253)
257 2ewv_A Twitching motility prot 97.5 7.4E-05 2.5E-09 57.8 4.0 27 19-45 134-160 (372)
258 3oes_A GTPase rhebl1; small GT 97.5 5.8E-05 2E-09 53.0 3.1 34 11-44 14-47 (201)
259 2yyz_A Sugar ABC transporter, 97.5 6.8E-05 2.3E-09 57.6 3.7 27 18-44 26-52 (359)
260 2r44_A Uncharacterized protein 97.5 4.6E-05 1.6E-09 57.9 2.7 28 22-49 47-74 (331)
261 3rlf_A Maltose/maltodextrin im 97.5 7E-05 2.4E-09 57.9 3.8 28 18-45 26-53 (381)
262 1n0w_A DNA repair protein RAD5 97.5 7.2E-05 2.5E-09 54.0 3.6 26 19-44 22-47 (243)
263 2it1_A 362AA long hypothetical 97.5 7.3E-05 2.5E-09 57.5 3.8 27 18-44 26-52 (362)
264 1cr0_A DNA primase/helicase; R 97.5 8.4E-05 2.9E-09 55.5 4.0 29 17-45 31-59 (296)
265 3jvv_A Twitching mobility prot 97.5 8.7E-05 3E-09 57.0 4.1 25 21-45 123-147 (356)
266 1z06_A RAS-related protein RAB 97.5 7E-05 2.4E-09 51.9 3.3 25 19-43 18-42 (189)
267 1sxj_D Activator 1 41 kDa subu 97.5 0.0001 3.4E-09 56.2 4.4 24 23-46 60-83 (353)
268 1v43_A Sugar-binding transport 97.5 7.7E-05 2.6E-09 57.6 3.8 26 19-44 35-60 (372)
269 3ihw_A Centg3; RAS, centaurin, 97.5 8.7E-05 3E-09 51.4 3.7 29 16-44 15-43 (184)
270 3kl4_A SRP54, signal recogniti 97.5 8.6E-05 2.9E-09 58.4 4.0 26 20-45 96-121 (433)
271 1z47_A CYSA, putative ABC-tran 97.5 7.5E-05 2.6E-09 57.3 3.6 26 19-44 39-64 (355)
272 1lw7_A Transcriptional regulat 97.4 6.9E-05 2.4E-09 57.8 3.2 27 21-47 170-196 (365)
273 3pxg_A Negative regulator of g 97.4 0.00011 3.7E-09 58.6 4.4 26 20-45 200-225 (468)
274 3tui_C Methionine import ATP-b 97.4 9.1E-05 3.1E-09 57.0 3.8 28 18-45 51-78 (366)
275 1sxj_E Activator 1 40 kDa subu 97.4 9.9E-05 3.4E-09 56.4 4.0 24 21-45 37-60 (354)
276 1fnn_A CDC6P, cell division co 97.4 0.00013 4.4E-09 56.3 4.6 23 23-45 46-68 (389)
277 2qgz_A Helicase loader, putati 97.4 0.00012 4.2E-09 55.1 4.4 39 21-59 152-196 (308)
278 2r2a_A Uncharacterized protein 97.4 0.00011 3.7E-09 51.8 3.8 25 20-44 4-28 (199)
279 1g29_1 MALK, maltose transport 97.4 8.9E-05 3E-09 57.3 3.6 26 19-44 27-52 (372)
280 2bbs_A Cystic fibrosis transme 97.4 7.6E-05 2.6E-09 55.7 3.1 27 19-45 62-88 (290)
281 3dm5_A SRP54, signal recogniti 97.4 0.00011 3.6E-09 58.0 4.0 26 20-45 99-124 (443)
282 3tsz_A Tight junction protein 97.4 0.0011 3.7E-08 51.6 9.6 136 18-186 229-365 (391)
283 2pjz_A Hypothetical protein ST 97.4 7.1E-05 2.4E-09 55.1 2.8 24 21-44 30-53 (263)
284 2gza_A Type IV secretion syste 97.4 5.8E-05 2E-09 58.2 2.5 27 20-46 174-200 (361)
285 1sxj_C Activator 1 40 kDa subu 97.4 9E-05 3.1E-09 56.5 3.5 22 24-45 49-70 (340)
286 3q3j_B RHO-related GTP-binding 97.4 0.00011 3.6E-09 52.3 3.6 40 5-44 11-50 (214)
287 3sop_A Neuronal-specific septi 97.4 0.0001 3.5E-09 54.5 3.6 24 22-45 3-26 (270)
288 3nh6_A ATP-binding cassette SU 97.4 4.9E-05 1.7E-09 57.1 1.8 27 19-45 78-104 (306)
289 2qm8_A GTPase/ATPase; G protei 97.4 0.00013 4.5E-09 55.6 4.3 28 18-45 52-79 (337)
290 2dr3_A UPF0273 protein PH0284; 97.4 0.00013 4.3E-09 52.8 3.9 26 20-45 22-47 (247)
291 3d31_A Sulfate/molybdate ABC t 97.4 6.4E-05 2.2E-09 57.6 2.4 27 18-44 23-49 (348)
292 1p9r_A General secretion pathw 97.4 0.00013 4.5E-09 57.2 4.2 28 19-46 165-192 (418)
293 1zu4_A FTSY; GTPase, signal re 97.4 0.00016 5.4E-09 54.8 4.5 27 19-45 103-129 (320)
294 3co5_A Putative two-component 97.4 2.3E-05 7.7E-10 52.2 -0.2 25 22-46 28-52 (143)
295 1z0f_A RAB14, member RAS oncog 97.4 9.7E-05 3.3E-09 50.4 3.1 26 19-44 13-38 (179)
296 3gd7_A Fusion complex of cysti 97.4 0.00011 3.9E-09 57.0 3.6 25 19-43 45-69 (390)
297 2b8t_A Thymidine kinase; deoxy 97.4 0.00016 5.5E-09 51.8 4.1 26 20-45 11-36 (223)
298 1nlf_A Regulatory protein REPA 97.4 0.00014 4.6E-09 53.9 3.9 26 20-45 29-54 (279)
299 1jr3_A DNA polymerase III subu 97.4 0.00014 4.9E-09 55.8 4.1 28 20-47 37-64 (373)
300 2z4s_A Chromosomal replication 97.4 0.00014 4.7E-09 57.6 4.0 36 21-56 130-172 (440)
301 2gf9_A RAS-related protein RAB 97.4 0.00011 3.9E-09 50.8 3.2 25 20-44 21-45 (189)
302 2www_A Methylmalonic aciduria 97.4 0.00016 5.4E-09 55.5 4.2 26 20-45 73-98 (349)
303 3con_A GTPase NRAS; structural 97.3 0.00011 3.6E-09 50.9 2.9 25 20-44 20-44 (190)
304 2chq_A Replication factor C sm 97.3 0.00019 6.4E-09 53.9 4.4 23 23-45 40-62 (319)
305 1g8p_A Magnesium-chelatase 38 97.3 7.1E-05 2.4E-09 57.1 2.1 23 24-46 48-70 (350)
306 2wjg_A FEOB, ferrous iron tran 97.3 0.00015 5.2E-09 50.0 3.5 24 20-43 6-29 (188)
307 1oxx_K GLCV, glucose, ABC tran 97.3 6.6E-05 2.3E-09 57.6 1.7 27 18-44 28-54 (353)
308 2bjv_A PSP operon transcriptio 97.3 0.00013 4.3E-09 53.6 3.1 26 21-46 29-54 (265)
309 2wsm_A Hydrogenase expression/ 97.3 0.0002 6.9E-09 50.9 4.0 27 19-45 28-54 (221)
310 3p32_A Probable GTPase RV1496/ 97.3 0.00021 7.2E-09 54.9 4.3 27 19-45 77-103 (355)
311 2wji_A Ferrous iron transport 97.3 0.00016 5.5E-09 49.0 3.2 22 22-43 4-25 (165)
312 1iqp_A RFCS; clamp loader, ext 97.3 0.00021 7.3E-09 53.7 4.2 23 23-45 48-70 (327)
313 2npi_A Protein CLP1; CLP1-PCF1 97.3 0.00014 4.6E-09 57.9 3.2 27 19-45 136-162 (460)
314 2qen_A Walker-type ATPase; unk 97.3 0.00021 7.2E-09 54.2 4.1 33 22-54 32-64 (350)
315 3kta_A Chromosome segregation 97.3 0.00018 6E-09 49.7 3.3 25 22-46 27-51 (182)
316 3pxi_A Negative regulator of g 97.3 0.00022 7.4E-09 60.3 4.4 27 19-45 199-225 (758)
317 1pzn_A RAD51, DNA repair and r 97.3 0.00017 5.8E-09 55.3 3.4 27 19-45 129-155 (349)
318 4bas_A ADP-ribosylation factor 97.2 0.00017 5.7E-09 50.2 3.0 27 17-43 13-39 (199)
319 1yrb_A ATP(GTP)binding protein 97.2 0.00031 1E-08 51.3 4.5 28 18-45 11-38 (262)
320 2f9l_A RAB11B, member RAS onco 97.2 0.00021 7.1E-09 50.0 3.5 23 22-44 6-28 (199)
321 3shw_A Tight junction protein 97.2 0.0011 3.6E-08 52.7 7.8 137 18-186 221-357 (468)
322 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00019 6.5E-09 54.2 3.4 32 21-52 123-156 (331)
323 3dz8_A RAS-related protein RAB 97.2 0.00011 3.7E-09 51.1 1.9 26 20-45 22-47 (191)
324 3hr8_A Protein RECA; alpha and 97.2 0.00023 7.9E-09 54.6 3.9 26 20-45 60-85 (356)
325 1sxj_B Activator 1 37 kDa subu 97.2 0.0002 6.8E-09 53.8 3.5 22 24-45 45-66 (323)
326 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00011 3.9E-09 55.8 2.1 26 21-46 171-196 (330)
327 1svi_A GTP-binding protein YSX 97.2 0.00027 9.1E-09 49.0 3.9 28 17-44 19-46 (195)
328 1pui_A ENGB, probable GTP-bind 97.2 0.00012 4.2E-09 51.5 2.2 28 16-43 21-48 (210)
329 2v3c_C SRP54, signal recogniti 97.2 0.00018 6.3E-09 56.6 3.3 26 20-45 98-123 (432)
330 1z2a_A RAS-related protein RAB 97.2 0.00021 7.2E-09 48.2 3.3 25 20-44 4-28 (168)
331 1ypw_A Transitional endoplasmi 97.2 0.00011 3.7E-09 62.5 2.1 31 20-50 510-540 (806)
332 2hf9_A Probable hydrogenase ni 97.2 0.00028 9.7E-09 50.3 4.0 27 19-45 36-62 (226)
333 3clv_A RAB5 protein, putative; 97.2 0.00032 1.1E-08 48.8 4.2 27 18-44 4-30 (208)
334 1xx6_A Thymidine kinase; NESG, 97.2 0.00037 1.3E-08 48.7 4.4 27 19-45 6-32 (191)
335 2ged_A SR-beta, signal recogni 97.2 0.00031 1.1E-08 48.6 4.0 26 19-44 46-71 (193)
336 1nij_A Hypothetical protein YJ 97.2 0.00019 6.3E-09 54.4 2.9 23 22-44 5-27 (318)
337 2fn4_A P23, RAS-related protei 97.2 0.00028 9.6E-09 48.1 3.5 25 20-44 8-32 (181)
338 3t5g_A GTP-binding protein RHE 97.2 0.00018 6E-09 49.4 2.5 25 19-43 4-28 (181)
339 2gj8_A MNME, tRNA modification 97.2 0.00026 9E-09 48.3 3.3 24 21-44 4-27 (172)
340 1kao_A RAP2A; GTP-binding prot 97.2 0.00029 9.8E-09 47.3 3.5 24 21-44 3-26 (167)
341 3pqc_A Probable GTP-binding pr 97.2 0.00032 1.1E-08 48.5 3.8 27 18-44 20-46 (195)
342 3llu_A RAS-related GTP-binding 97.2 0.00016 5.5E-09 50.4 2.2 30 16-45 15-44 (196)
343 2atv_A RERG, RAS-like estrogen 97.2 0.00033 1.1E-08 48.8 3.8 28 17-44 24-51 (196)
344 2lkc_A Translation initiation 97.2 0.00037 1.3E-08 47.5 4.0 25 19-43 6-30 (178)
345 3lxw_A GTPase IMAP family memb 97.2 0.00023 8E-09 51.8 3.1 27 17-43 17-43 (247)
346 2dyk_A GTP-binding protein; GT 97.2 0.00031 1.1E-08 47.0 3.5 23 22-44 2-24 (161)
347 1ls1_A Signal recognition part 97.1 0.00036 1.2E-08 52.2 4.1 26 20-45 97-122 (295)
348 1a5t_A Delta prime, HOLB; zinc 97.1 0.00046 1.6E-08 52.5 4.7 29 19-47 22-50 (334)
349 1nrj_B SR-beta, signal recogni 97.1 0.00038 1.3E-08 49.3 3.9 27 19-45 10-36 (218)
350 3c5c_A RAS-like protein 12; GD 97.1 0.0003 1E-08 48.7 3.3 27 18-44 18-44 (187)
351 2rcn_A Probable GTPase ENGC; Y 97.1 0.00031 1.1E-08 53.9 3.6 25 20-44 214-238 (358)
352 2oil_A CATX-8, RAS-related pro 97.1 0.00029 9.8E-09 48.9 3.2 25 20-44 24-48 (193)
353 3kfv_A Tight junction protein 97.1 0.015 5.3E-07 43.5 12.6 96 18-144 142-239 (308)
354 2zej_A Dardarin, leucine-rich 97.1 0.00025 8.7E-09 48.9 2.8 22 22-43 3-24 (184)
355 2oap_1 GSPE-2, type II secreti 97.1 0.0002 6.9E-09 57.7 2.6 26 20-45 259-284 (511)
356 2j37_W Signal recognition part 97.1 0.00036 1.2E-08 56.0 4.0 27 19-45 99-125 (504)
357 2ce2_X GTPase HRAS; signaling 97.1 0.00032 1.1E-08 46.9 3.3 23 22-44 4-26 (166)
358 2zr9_A Protein RECA, recombina 97.1 0.00037 1.2E-08 53.4 3.9 26 20-45 60-85 (349)
359 3nbx_X ATPase RAVA; AAA+ ATPas 97.1 0.00016 5.4E-09 58.0 1.9 25 22-46 42-66 (500)
360 2yv5_A YJEQ protein; hydrolase 97.1 0.00034 1.2E-08 52.5 3.6 25 20-45 164-188 (302)
361 1u8z_A RAS-related protein RAL 97.1 0.00036 1.2E-08 46.8 3.4 24 21-44 4-27 (168)
362 3lda_A DNA repair protein RAD5 97.1 0.00031 1.1E-08 54.8 3.4 24 20-43 177-200 (400)
363 2qag_B Septin-6, protein NEDD5 97.1 0.00031 1.1E-08 55.1 3.3 26 19-44 38-65 (427)
364 3ozx_A RNAse L inhibitor; ATP 97.1 0.00033 1.1E-08 56.8 3.6 28 18-45 22-49 (538)
365 1upt_A ARL1, ADP-ribosylation 97.1 0.00045 1.5E-08 46.7 3.8 24 20-43 6-29 (171)
366 2p67_A LAO/AO transport system 97.1 0.00044 1.5E-08 52.8 4.1 28 18-45 53-80 (341)
367 1ky3_A GTP-binding protein YPT 97.1 0.00036 1.2E-08 47.6 3.3 25 20-44 7-31 (182)
368 3bwd_D RAC-like GTP-binding pr 97.1 0.00045 1.6E-08 47.2 3.8 27 18-44 5-31 (182)
369 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0004 1.4E-08 58.6 4.1 27 23-49 490-516 (758)
370 2bov_A RAla, RAS-related prote 97.1 0.0004 1.4E-08 48.6 3.5 25 20-44 13-37 (206)
371 1tq4_A IIGP1, interferon-induc 97.1 0.00036 1.2E-08 54.6 3.5 25 20-44 68-92 (413)
372 2il1_A RAB12; G-protein, GDP, 97.1 0.0004 1.4E-08 48.2 3.4 23 21-43 26-48 (192)
373 1c1y_A RAS-related protein RAP 97.1 0.00041 1.4E-08 46.6 3.4 22 22-43 4-25 (167)
374 2nzj_A GTP-binding protein REM 97.1 0.00039 1.3E-08 47.2 3.3 23 21-43 4-26 (175)
375 3lxx_A GTPase IMAP family memb 97.1 0.00034 1.2E-08 50.5 3.1 25 19-43 27-51 (239)
376 2f7s_A C25KG, RAS-related prot 97.1 0.00032 1.1E-08 49.6 2.9 23 21-43 25-47 (217)
377 1gwn_A RHO-related GTP-binding 97.1 0.00035 1.2E-08 49.2 3.1 25 20-44 27-51 (205)
378 2xxa_A Signal recognition part 97.0 0.00049 1.7E-08 54.2 4.2 27 19-45 98-124 (433)
379 2dpy_A FLII, flagellum-specifi 97.0 0.00065 2.2E-08 53.7 4.8 31 16-46 152-182 (438)
380 1yqt_A RNAse L inhibitor; ATP- 97.0 0.00041 1.4E-08 56.3 3.8 27 19-45 45-71 (538)
381 2q3h_A RAS homolog gene family 97.0 0.00042 1.4E-08 48.3 3.4 26 18-43 17-42 (201)
382 2zts_A Putative uncharacterize 97.0 0.0005 1.7E-08 49.6 3.9 25 19-43 28-52 (251)
383 1j8m_F SRP54, signal recogniti 97.0 0.00038 1.3E-08 52.1 3.4 25 21-45 98-122 (297)
384 2erx_A GTP-binding protein DI- 97.0 0.00038 1.3E-08 47.0 3.1 23 21-43 3-25 (172)
385 1fzq_A ADP-ribosylation factor 97.0 0.00044 1.5E-08 47.6 3.5 26 19-44 14-39 (181)
386 3b5x_A Lipid A export ATP-bind 97.0 0.00039 1.3E-08 56.9 3.6 26 20-45 368-393 (582)
387 2hxs_A RAB-26, RAS-related pro 97.0 0.00047 1.6E-08 46.9 3.5 24 20-43 5-28 (178)
388 2iwr_A Centaurin gamma 1; ANK 97.0 0.00037 1.3E-08 47.6 2.9 26 19-44 5-30 (178)
389 3kkq_A RAS-related protein M-R 97.0 0.0005 1.7E-08 47.1 3.6 25 20-44 17-41 (183)
390 2a9k_A RAS-related protein RAL 97.0 0.00044 1.5E-08 47.4 3.3 25 20-44 17-41 (187)
391 2p5s_A RAS and EF-hand domain 97.0 0.00051 1.7E-08 47.9 3.6 28 17-44 24-51 (199)
392 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00035 1.2E-08 47.6 2.7 24 21-44 7-30 (177)
393 1v5w_A DMC1, meiotic recombina 97.0 0.0005 1.7E-08 52.5 3.8 26 19-44 120-145 (343)
394 2fv8_A H6, RHO-related GTP-bin 97.0 0.00036 1.2E-08 49.1 2.8 24 20-43 24-47 (207)
395 3b60_A Lipid A export ATP-bind 97.0 0.00036 1.2E-08 57.2 3.1 27 19-45 367-393 (582)
396 2ffh_A Protein (FFH); SRP54, s 97.0 0.00055 1.9E-08 53.8 4.0 26 20-45 97-122 (425)
397 3euj_A Chromosome partition pr 97.0 0.00042 1.4E-08 55.2 3.3 24 22-45 30-53 (483)
398 1u0l_A Probable GTPase ENGC; p 97.0 0.00035 1.2E-08 52.4 2.8 24 21-44 169-192 (301)
399 1ko7_A HPR kinase/phosphatase; 97.0 0.00047 1.6E-08 51.8 3.4 30 21-51 144-173 (314)
400 3j16_B RLI1P; ribosome recycli 97.0 0.00051 1.7E-08 56.4 3.9 28 18-45 100-127 (608)
401 3bh0_A DNAB-like replicative h 97.0 0.00066 2.2E-08 51.3 4.2 37 9-45 55-92 (315)
402 3k53_A Ferrous iron transport 97.0 0.00052 1.8E-08 50.6 3.6 24 21-44 3-26 (271)
403 1z08_A RAS-related protein RAB 97.0 0.00044 1.5E-08 46.7 3.0 24 21-44 6-29 (170)
404 4dsu_A GTPase KRAS, isoform 2B 97.0 0.00043 1.5E-08 47.6 2.9 24 21-44 4-27 (189)
405 1m7b_A RND3/RHOE small GTP-bin 97.0 0.00047 1.6E-08 47.5 3.1 25 20-44 6-30 (184)
406 1u94_A RECA protein, recombina 97.0 0.00061 2.1E-08 52.3 4.0 27 19-45 61-87 (356)
407 2y8e_A RAB-protein 6, GH09086P 97.0 0.0004 1.4E-08 47.2 2.8 23 21-43 14-36 (179)
408 3k1j_A LON protease, ATP-depen 97.0 0.00039 1.3E-08 57.2 3.1 25 22-46 61-85 (604)
409 1ek0_A Protein (GTP-binding pr 97.0 0.00041 1.4E-08 46.7 2.7 23 22-44 4-26 (170)
410 1g16_A RAS-related protein SEC 97.0 0.00049 1.7E-08 46.4 3.1 22 22-43 4-25 (170)
411 3iev_A GTP-binding protein ERA 97.0 0.0004 1.4E-08 52.2 2.8 27 17-43 6-32 (308)
412 1w5s_A Origin recognition comp 97.0 0.00046 1.6E-08 53.7 3.3 26 20-45 49-76 (412)
413 2fna_A Conserved hypothetical 97.0 0.00071 2.4E-08 51.4 4.3 25 22-46 31-55 (357)
414 1moz_A ARL1, ADP-ribosylation 97.0 0.00037 1.3E-08 47.7 2.5 24 19-42 16-39 (183)
415 2obl_A ESCN; ATPase, hydrolase 97.0 0.00056 1.9E-08 52.3 3.7 31 16-46 66-96 (347)
416 3q72_A GTP-binding protein RAD 97.0 0.00056 1.9E-08 46.0 3.3 21 22-42 3-23 (166)
417 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00062 2.1E-08 45.6 3.4 24 21-44 23-46 (149)
418 1qvr_A CLPB protein; coiled co 96.9 0.00038 1.3E-08 59.6 2.9 26 20-45 190-215 (854)
419 2efe_B Small GTP-binding prote 96.9 0.00049 1.7E-08 47.0 3.0 24 21-44 12-35 (181)
420 1m2o_B GTP-binding protein SAR 96.9 0.00057 1.9E-08 47.4 3.4 24 20-43 22-45 (190)
421 2yl4_A ATP-binding cassette SU 96.9 0.00037 1.3E-08 57.2 2.6 27 19-45 368-394 (595)
422 3q85_A GTP-binding protein REM 96.9 0.00061 2.1E-08 45.9 3.3 22 22-43 3-24 (169)
423 2z43_A DNA repair and recombin 96.9 0.00065 2.2E-08 51.5 3.8 26 20-45 106-131 (324)
424 1z0j_A RAB-22, RAS-related pro 96.9 0.00061 2.1E-08 45.9 3.3 24 21-44 6-29 (170)
425 1ojl_A Transcriptional regulat 96.9 0.00064 2.2E-08 51.0 3.7 25 21-45 25-49 (304)
426 2r8r_A Sensor protein; KDPD, P 96.9 0.00095 3.3E-08 47.8 4.3 25 21-45 6-30 (228)
427 1r2q_A RAS-related protein RAB 96.9 0.00039 1.3E-08 46.9 2.2 23 21-43 6-28 (170)
428 3bc1_A RAS-related protein RAB 96.9 0.00055 1.9E-08 47.2 3.1 23 21-43 11-33 (195)
429 2hup_A RAS-related protein RAB 96.9 0.00052 1.8E-08 48.1 2.9 24 20-43 28-51 (201)
430 2xtp_A GTPase IMAP family memb 96.9 0.00065 2.2E-08 49.6 3.6 25 19-43 20-44 (260)
431 2ew1_A RAS-related protein RAB 96.9 0.00052 1.8E-08 48.2 2.9 24 21-44 26-49 (201)
432 1r6b_X CLPA protein; AAA+, N-t 96.9 0.00072 2.5E-08 57.1 4.3 27 19-45 205-231 (758)
433 3tw8_B RAS-related protein RAB 96.9 0.00051 1.8E-08 46.8 2.8 24 20-43 8-31 (181)
434 3cbq_A GTP-binding protein REM 96.9 0.00043 1.5E-08 48.3 2.4 23 20-42 22-44 (195)
435 2b6h_A ADP-ribosylation factor 96.9 0.00084 2.9E-08 46.6 3.9 26 18-43 26-51 (192)
436 3qf4_B Uncharacterized ABC tra 96.9 0.00044 1.5E-08 56.8 2.8 27 19-45 379-405 (598)
437 2gf0_A GTP-binding protein DI- 96.9 0.00091 3.1E-08 46.4 4.0 24 20-43 7-30 (199)
438 3t1o_A Gliding protein MGLA; G 96.9 0.00046 1.6E-08 47.7 2.4 27 20-46 13-39 (198)
439 3tkl_A RAS-related protein RAB 96.9 0.00066 2.2E-08 47.0 3.2 24 21-44 16-39 (196)
440 1zj6_A ADP-ribosylation factor 96.9 0.00083 2.8E-08 46.3 3.7 25 19-43 14-38 (187)
441 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.00065 2.2E-08 46.5 3.1 23 21-43 5-27 (186)
442 3ozx_A RNAse L inhibitor; ATP 96.9 0.00056 1.9E-08 55.4 3.1 26 20-45 293-318 (538)
443 1vg8_A RAS-related protein RAB 96.9 0.00071 2.4E-08 47.3 3.3 25 20-44 7-31 (207)
444 2g6b_A RAS-related protein RAB 96.9 0.00063 2.2E-08 46.4 3.0 25 20-44 9-33 (180)
445 2o52_A RAS-related protein RAB 96.9 0.00055 1.9E-08 47.9 2.7 24 20-43 24-47 (200)
446 3pxi_A Negative regulator of g 96.9 0.00086 3E-08 56.6 4.3 23 23-45 523-545 (758)
447 2r6a_A DNAB helicase, replicat 96.8 0.00094 3.2E-08 53.0 4.3 28 18-45 200-227 (454)
448 1r8s_A ADP-ribosylation factor 96.8 0.0009 3.1E-08 44.8 3.6 22 23-44 2-23 (164)
449 2fh5_B SR-beta, signal recogni 96.8 0.00079 2.7E-08 47.4 3.5 25 20-44 6-30 (214)
450 1ksh_A ARF-like protein 2; sma 96.8 0.0008 2.7E-08 46.2 3.4 25 19-43 16-40 (186)
451 3e1s_A Exodeoxyribonuclease V, 96.8 0.00089 3E-08 54.7 4.1 25 21-45 204-228 (574)
452 3bk7_A ABC transporter ATP-bin 96.8 0.00063 2.1E-08 55.9 3.2 27 19-45 115-141 (607)
453 1yqt_A RNAse L inhibitor; ATP- 96.8 0.00075 2.6E-08 54.7 3.6 26 20-45 311-336 (538)
454 4gzl_A RAS-related C3 botulinu 96.8 0.00084 2.9E-08 47.1 3.5 25 19-43 28-52 (204)
455 2i1q_A DNA repair and recombin 96.8 0.00074 2.5E-08 51.0 3.4 25 20-44 97-121 (322)
456 2j0v_A RAC-like GTP-binding pr 96.8 0.00091 3.1E-08 47.1 3.7 27 18-44 6-32 (212)
457 1tf7_A KAIC; homohexamer, hexa 96.8 0.00069 2.4E-08 54.8 3.4 23 19-41 37-59 (525)
458 3reg_A RHO-like small GTPase; 96.8 0.00067 2.3E-08 47.1 2.9 25 20-44 22-46 (194)
459 1f6b_A SAR1; gtpases, N-termin 96.8 0.00074 2.5E-08 47.2 3.1 25 19-43 23-47 (198)
460 4a82_A Cystic fibrosis transme 96.8 0.00036 1.2E-08 57.1 1.6 27 19-45 365-391 (578)
461 3upu_A ATP-dependent DNA helic 96.8 0.0009 3.1E-08 53.2 3.9 23 23-45 47-69 (459)
462 2j9r_A Thymidine kinase; TK1, 96.8 0.0014 4.9E-08 46.4 4.4 27 19-45 26-52 (214)
463 3bk7_A ABC transporter ATP-bin 96.8 0.00081 2.8E-08 55.3 3.6 26 20-45 381-406 (607)
464 2bme_A RAB4A, RAS-related prot 96.8 0.00067 2.3E-08 46.6 2.7 24 21-44 10-33 (186)
465 1zcb_A G alpha I/13; GTP-bindi 96.8 0.00089 3.1E-08 51.5 3.6 25 19-43 31-55 (362)
466 1t9h_A YLOQ, probable GTPase E 96.8 0.00025 8.6E-09 53.3 0.5 24 20-43 172-195 (307)
467 3cph_A RAS-related protein SEC 96.8 0.001 3.5E-08 46.7 3.6 25 19-43 18-42 (213)
468 2j1l_A RHO-related GTP-binding 96.8 0.00084 2.9E-08 47.5 3.2 24 20-43 33-56 (214)
469 2fg5_A RAB-22B, RAS-related pr 96.8 0.00075 2.5E-08 46.8 2.8 24 21-44 23-46 (192)
470 3b1v_A Ferrous iron uptake tra 96.8 0.00098 3.3E-08 49.2 3.5 23 21-43 3-25 (272)
471 1qvr_A CLPB protein; coiled co 96.7 0.00081 2.8E-08 57.6 3.4 24 22-45 589-612 (854)
472 3a1s_A Iron(II) transport prot 96.7 0.00074 2.5E-08 49.5 2.8 23 21-43 5-27 (258)
473 1ega_A Protein (GTP-binding pr 96.7 0.00066 2.2E-08 50.9 2.5 24 20-43 7-30 (301)
474 2cxx_A Probable GTP-binding pr 96.7 0.00086 2.9E-08 46.1 3.0 21 23-43 3-23 (190)
475 3qf4_A ABC transporter, ATP-bi 96.7 0.00052 1.8E-08 56.3 2.1 27 19-45 367-393 (587)
476 2gco_A H9, RHO-related GTP-bin 96.7 0.00087 3E-08 46.9 3.0 24 21-44 25-48 (201)
477 2qnr_A Septin-2, protein NEDD5 96.7 0.00066 2.3E-08 50.9 2.5 24 20-43 17-40 (301)
478 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 0.0012 4.1E-08 51.3 4.0 25 19-43 18-42 (392)
479 4dhe_A Probable GTP-binding pr 96.7 0.00056 1.9E-08 48.5 1.9 27 18-44 26-52 (223)
480 2qu8_A Putative nucleolar GTP- 96.7 0.0012 4E-08 47.2 3.6 25 19-43 27-51 (228)
481 3gj0_A GTP-binding nuclear pro 96.7 0.00084 2.9E-08 47.6 2.8 27 19-45 13-40 (221)
482 3j16_B RLI1P; ribosome recycli 96.7 0.001 3.6E-08 54.6 3.6 24 22-45 379-402 (608)
483 3io5_A Recombination and repai 96.7 0.0012 4E-08 49.8 3.4 23 23-45 30-52 (333)
484 1tf7_A KAIC; homohexamer, hexa 96.7 0.0013 4.4E-08 53.2 3.9 26 20-45 280-305 (525)
485 1xp8_A RECA protein, recombina 96.7 0.0014 4.7E-08 50.5 3.9 26 20-45 73-98 (366)
486 2atx_A Small GTP binding prote 96.6 0.00082 2.8E-08 46.5 2.3 24 21-44 18-41 (194)
487 3iby_A Ferrous iron transport 96.6 0.0012 4E-08 48.3 3.2 22 23-44 3-24 (256)
488 3i8s_A Ferrous iron transport 96.6 0.0014 4.9E-08 48.4 3.7 24 21-44 3-26 (274)
489 1x3s_A RAS-related protein RAB 96.6 0.0014 4.9E-08 45.2 3.5 24 21-44 15-38 (195)
490 2q6t_A DNAB replication FORK h 96.6 0.0016 5.6E-08 51.5 4.1 27 19-45 198-224 (444)
491 3ice_A Transcription terminati 96.6 0.0014 4.9E-08 50.7 3.6 32 14-45 167-198 (422)
492 1zbd_A Rabphilin-3A; G protein 96.6 0.0013 4.6E-08 45.8 3.3 23 21-43 8-30 (203)
493 4a1f_A DNAB helicase, replicat 96.6 0.0018 6.1E-08 49.3 4.1 28 18-45 43-70 (338)
494 2qag_C Septin-7; cell cycle, c 96.6 0.00093 3.2E-08 52.4 2.6 24 21-44 31-54 (418)
495 2a5y_B CED-4; apoptosis; HET: 96.6 0.0015 5.2E-08 53.0 3.9 24 20-43 151-174 (549)
496 2bcg_Y Protein YP2, GTP-bindin 96.6 0.0015 5E-08 45.8 3.3 23 21-43 8-30 (206)
497 2cjw_A GTP-binding protein GEM 96.6 0.0015 5.3E-08 45.3 3.4 23 22-44 7-29 (192)
498 3qks_A DNA double-strand break 96.6 0.0016 5.4E-08 45.9 3.4 26 21-46 23-48 (203)
499 1knx_A Probable HPR(Ser) kinas 96.6 0.0012 4E-08 49.6 2.9 31 20-51 146-176 (312)
500 2iw3_A Elongation factor 3A; a 96.6 0.0014 4.7E-08 56.6 3.6 25 19-43 459-483 (986)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=2.8e-36 Score=216.83 Aligned_cols=175 Identities=45% Similarity=0.740 Sum_probs=159.7
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
..++++|+|.|||||||+|+|+.|++++++.+++.+|++|+.+..+++.+..+..++..|..+|+++...++...+.+..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~ 105 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV 105 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999886533
Q ss_pred --CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHH
Q 029252 98 --NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQY 173 (196)
Q Consensus 98 --~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (196)
..+||+||||++..+...|.. ....++.+++|++|++++.+|+..| ..+|.+++++.+++|++.|+....|++++
T Consensus 106 ~~~~g~ilDGfPRt~~Qa~~l~~-~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~ 184 (217)
T 3umf_A 106 DKNCHFLIDGYPRELDQGIKFEK-EVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEH 184 (217)
T ss_dssp TTCSEEEEETBCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccccCcccccCCCcHHHHHHHHH-hCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999988 7788999999999999999999999 45788899999999999999999999999
Q ss_pred HHhcCcEEEEeCCCCceeEE
Q 029252 174 YEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 174 ~~~~~~~~~id~~~~~e~v~ 193 (196)
|...+.++.||++.++++|+
T Consensus 185 Y~~~~~l~~Idg~~~~eeV~ 204 (217)
T 3umf_A 185 YKQQNKVITIDASGTVDAIF 204 (217)
T ss_dssp HHTTTCEEEEETTSCHHHHH
T ss_pred HHhcCCEEEEECCCCHHHHH
Confidence 99988999999999998875
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=1.7e-34 Score=206.67 Aligned_cols=170 Identities=31% Similarity=0.659 Sum_probs=156.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
++|+|.|||||||+|+|+.|++++++.+++.+|++|+.+..++..+.....++..|..+|+++...++...+.+ ..+|
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~--~~~~ 78 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK--HGNV 78 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS--SSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc--CCce
Confidence 57899999999999999999999999999999999999999999999999999999999999999999998864 5679
Q ss_pred EEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc----cC------------------CCCCCcHHHH
Q 029252 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ------------------GREDDNVETI 156 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R----~~------------------~r~~~~~~~~ 156 (196)
|+||||++..++..|... ....++.+++|++|++++.+|+..| .+ .|.+++++.+
T Consensus 79 ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i 158 (206)
T 3sr0_A 79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVI 158 (206)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHH
T ss_pred EecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHH
Confidence 999999999999887543 5677899999999999999999998 11 3678899999
Q ss_pred HHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 157 RKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
++|++.|+..+.+++++|...+.++.||++.++++|+
T Consensus 159 ~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~ 195 (206)
T 3sr0_A 159 KKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVY 195 (206)
T ss_dssp HHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 9999999999999999999988999999999998875
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=5.8e-33 Score=200.09 Aligned_cols=173 Identities=32% Similarity=0.581 Sum_probs=150.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-ND 99 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 99 (196)
.+...|.|+|||||||+|+.|++++++.++++++++++....+++.+..+..++..|..+++++...++.+.+.+.+ ..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~ 87 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN 87 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence 36789999999999999999999999999999999999988899999999999999999999999999999987643 67
Q ss_pred eEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc----cC-------------------------CCCC
Q 029252 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQ-------------------------GRED 150 (196)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R----~~-------------------------~r~~ 150 (196)
+||+||||++..+...|.+ ....++.+|+|++|++++.+|+..| .+ .|.+
T Consensus 88 g~ILDGfPRt~~Qa~~L~~-~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~D 166 (230)
T 3gmt_A 88 GYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDD 166 (230)
T ss_dssp CEEEESCCCSHHHHHHHHH-TTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred CeEecCCCCcHHHHHHHHH-hCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCC
Confidence 8999999999999998887 7778999999999999999999999 22 2788
Q ss_pred CcHHHHHHHHHHHHhcchhHHHHHHhc-----------CcEEEEeCCCCceeEEe
Q 029252 151 DNVETIRKRFKVFLESSLPVVQYYEAK-----------GKVRKVIFCSPIFILVI 194 (196)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~id~~~~~e~v~~ 194 (196)
++++.+++|++.|+..+.|++++|... +.+..||++.++++|+.
T Consensus 167 D~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~ 221 (230)
T 3gmt_A 167 DKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRA 221 (230)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHH
Confidence 999999999999999999999999873 68999999999999875
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.97 E-value=9.4e-30 Score=187.11 Aligned_cols=175 Identities=33% Similarity=0.586 Sum_probs=155.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG- 97 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 97 (196)
.++++|+|+|+|||||||+|+.|+++++..+++.+++++.....+++.+..+..++..+..+++.+...++...+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 106 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC 106 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999999999999999999888888899999999999999999998888888886533
Q ss_pred CCeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc----C------------------------
Q 029252 98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN----Q------------------------ 146 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~----~------------------------ 146 (196)
+.+||+||+|....+...+.++ ....++.+++|++|++++.+|+.+|. +
T Consensus 107 ~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 186 (243)
T 3tlx_A 107 KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPL 186 (243)
T ss_dssp SSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred cCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccccc
Confidence 7889999999999888776543 45678999999999999999999982 1
Q ss_pred -CCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 147 -GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 147 -~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.|.+++++.+++|+..|+....++.++|...+.++.||++.++++|+
T Consensus 187 ~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~ 234 (243)
T 3tlx_A 187 IQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLE 234 (243)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHH
Confidence 35678899999999999999999999999888899999999998765
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.96 E-value=3e-28 Score=176.17 Aligned_cols=172 Identities=32% Similarity=0.576 Sum_probs=151.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 100 (196)
+.|+|+|+|||||||+|+.|++++++.+++.|++++.....+++.+..+..++..+..+++.....++...+.... +..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence 3589999999999999999999999999999999999988888899999999999999999888888888876533 788
Q ss_pred EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-----------------------------CCC
Q 029252 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR 148 (196)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-----------------------------~~r 148 (196)
+|+||+|....+...+... ....++.+|+|++|++++.+|+.+|. .+|
T Consensus 81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3dl0_A 81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence 9999999998887766543 45568999999999999999999881 145
Q ss_pred CCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.+++++.+++|+..|.....++.++|...+.++.||++.++++++
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~ 205 (216)
T 3dl0_A 161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVY 205 (216)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 778899999999999999999999999888899999999988764
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.96 E-value=5.8e-28 Score=174.65 Aligned_cols=172 Identities=31% Similarity=0.605 Sum_probs=150.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 100 (196)
+.|+|+|+|||||||+|+.|++++++.+++.|++++.....+.+.+..+..++..+..+++.+...++...+.... +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence 3689999999999999999999999999999999999988888889999999999999999888888888876533 788
Q ss_pred EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-----------------------------CCC
Q 029252 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR 148 (196)
Q Consensus 101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-----------------------------~~r 148 (196)
+|+||+|....+...+... ....++.+|+|++|++++.+|+.+|. .+|
T Consensus 81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence 9999999998887766543 45568999999999999999999881 134
Q ss_pred CCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.+++++.+++|+..|.....++.++|...+.++.||++.++++++
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~ 205 (216)
T 3fb4_A 161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVF 205 (216)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHH
Confidence 667889999999999999999999999888899999999988764
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.96 E-value=8.1e-28 Score=174.06 Aligned_cols=173 Identities=32% Similarity=0.600 Sum_probs=144.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-ND 99 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 99 (196)
.+.|+|.|+|||||||+++.|++++++.+++.|++++.....+++.+..+..++..|..++++....++...+.... +.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~ 84 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVN 84 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence 46899999999999999999999999999999999999888888888888888888888888888888887776433 77
Q ss_pred eEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-C----------------------------C
Q 029252 100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-Q----------------------------G 147 (196)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-~----------------------------~ 147 (196)
+||+||+|....+...+... ....|+.+|||++|++++.+|+..|. . .
T Consensus 85 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 164 (217)
T 3be4_A 85 GFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVW 164 (217)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBC
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccccccc
Confidence 89999999998776665531 45678999999999999999999871 1 1
Q ss_pred CCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 148 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+.++..+.+.+++..|+....+++++|...+.++.||++.++++|+
T Consensus 165 ~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~ 210 (217)
T 3be4_A 165 RDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVT 210 (217)
T ss_dssp CGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHH
Confidence 3345678889999999999999999998767899999999988765
No 8
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.96 E-value=2.4e-27 Score=171.87 Aligned_cols=174 Identities=26% Similarity=0.534 Sum_probs=146.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH-hc-C
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-ES-G 97 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~ 97 (196)
++++|+|.|+|||||||+++.|+++++..+++.|++++.....+++.+..+..++..|...++.....++...+. .. .
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 82 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC 82 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence 457899999999999999999999999999999999999878888888888898988888899888888877765 22 2
Q ss_pred CCeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-C---------------------------
Q 029252 98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-Q--------------------------- 146 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-~--------------------------- 146 (196)
+.+||+||++....+...+.++ ....++.+|||++|++++.+|+..|. .
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l 162 (220)
T 1aky_A 83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL 162 (220)
T ss_dssp GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccccc
Confidence 5689999999888776655432 45678999999999999999998872 1
Q ss_pred -CCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 147 -GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 147 -~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.|.+++.+.+++|+..|+....+++++|...+.++.||++.++++|+
T Consensus 163 ~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~ 210 (220)
T 1aky_A 163 VQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVW 210 (220)
T ss_dssp BCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHH
Confidence 24556678899999999999999999998767799999999988764
No 9
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.96 E-value=1.6e-27 Score=172.16 Aligned_cols=170 Identities=36% Similarity=0.638 Sum_probs=146.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF 101 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 101 (196)
.|+|.|+|||||||+++.|++++++.+++.|+++++....+++.+..+..++..+..+++.....++...+.... ..+|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGF 81 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCE
Confidence 589999999999999999999999999999999999888888888888888888888888888888888776432 4679
Q ss_pred EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc-C----------------------------CCCCCc
Q 029252 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-Q----------------------------GREDDN 152 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-~----------------------------~r~~~~ 152 (196)
|+||++....+...+.. ....++.+|||++|++++.+|+..|. . .|.++.
T Consensus 82 i~dg~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd~ 160 (214)
T 1e4v_A 82 LLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ 160 (214)
T ss_dssp EEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTCS
T ss_pred EEeCCCCCHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCCC
Confidence 99999998888777766 56678999999999999999998872 1 366777
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHhc-----CcEEEEeCCCCceeEE
Q 029252 153 VETIRKRFKVFLESSLPVVQYYEAK-----GKVRKVIFCSPIFILV 193 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~id~~~~~e~v~ 193 (196)
.+.+++|+..|+....+++++|... ..++.||++.++++|+
T Consensus 161 ~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~ 206 (214)
T 1e4v_A 161 EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVR 206 (214)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHH
Confidence 8899999999999999999999754 5799999999988764
No 10
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.96 E-value=4.3e-27 Score=172.01 Aligned_cols=174 Identities=32% Similarity=0.586 Sum_probs=146.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-C
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-N 98 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 98 (196)
.++.|+|.|+|||||||+++.|++++++.+++.++++++....++..+..+..++..+..++++....++...+.... +
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~ 94 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCK 94 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccc
Confidence 457899999999999999999999999999999999999877788888888898988888899888888888776432 5
Q ss_pred CeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-C-----------------------C----
Q 029252 99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-Q-----------------------G---- 147 (196)
Q Consensus 99 ~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-~-----------------------~---- 147 (196)
.+||+|||+....+...+.++ ....++.+|||++|++++.+|+..|. . +
T Consensus 95 ~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 174 (233)
T 1ak2_A 95 NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLI 174 (233)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCE
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccccccc
Confidence 679999999988776655432 34568999999999999999999882 1 1
Q ss_pred -CCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 148 -REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 148 -r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
|.++..+.+++|+..|+....+++++|...+.++.||++.++++|+
T Consensus 175 ~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~ 221 (233)
T 1ak2_A 175 RRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVF 221 (233)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 4556778899999999988888889998766789999999988764
No 11
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.96 E-value=5.8e-27 Score=166.37 Aligned_cols=177 Identities=53% Similarity=0.889 Sum_probs=146.8
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (196)
...++.+|+|+|+|||||||+++.|++++++.+++.|++++.....+.+.+..+...+..+...+.......+...+...
T Consensus 2 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 81 (194)
T 1qf9_A 2 EKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN 81 (194)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Confidence 34567899999999999999999999999999999999999887677788888888888888888887777887777654
Q ss_pred CCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHH
Q 029252 97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQ 172 (196)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 172 (196)
.+..+|+||++....+...+... ....++++|||++|++++.+|+..| ..++.+++.+.+.+|+..+.....++.+
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~ 161 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVID 161 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 57889999999988777666542 2236788999999999999999998 2356677788899999998888888888
Q ss_pred HHHhcCcEEEEeCCCCceeEE
Q 029252 173 YYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 173 ~~~~~~~~~~id~~~~~e~v~ 193 (196)
.|.....+++||++.++++++
T Consensus 162 ~~~~~~~~~~id~~~~~~~~~ 182 (194)
T 1qf9_A 162 HYNKFDKVKIIPANRDVNEVY 182 (194)
T ss_dssp HHHHTTCEEEEECSSCHHHHH
T ss_pred HHHhCCCEEEEECCCCHHHHH
Confidence 887666678999998887654
No 12
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.96 E-value=5.1e-27 Score=167.95 Aligned_cols=173 Identities=30% Similarity=0.586 Sum_probs=141.8
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (196)
.+.++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+...+..+...++......+...+...
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 95 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP 95 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc
Confidence 45567899999999999999999999999999999999999877777777888888888888888877777776665432
Q ss_pred -CCCeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHH
Q 029252 97 -GNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ 172 (196)
Q Consensus 97 -~~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 172 (196)
.+.+||+|+++....+...+..+ ....++.+|||++|++++.+|+.+| ++.+++.+.+.+++..|.....++.+
T Consensus 96 ~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R--~r~~~~~e~~~~r~~~~~~~~~~~~~ 173 (201)
T 2cdn_A 96 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVILNRMKVYRDETAPLLE 173 (201)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHHHHHHHHHHHHTTTHHH
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 26679999999888766555432 3456889999999999999999999 67667788899999999887778877
Q ss_pred HHHhcCcEEEEeCCCCceeEE
Q 029252 173 YYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 173 ~~~~~~~~~~id~~~~~e~v~ 193 (196)
+| ...+++||++.++++++
T Consensus 174 ~~--~~~~~~Id~~~~~eev~ 192 (201)
T 2cdn_A 174 YY--RDQLKTVDAVGTMDEVF 192 (201)
T ss_dssp HT--TTTEEEEECCSCHHHHH
T ss_pred Hh--cCcEEEEeCCCCHHHHH
Confidence 77 34588999998888764
No 13
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.96 E-value=1.1e-26 Score=165.34 Aligned_cols=173 Identities=43% Similarity=0.819 Sum_probs=142.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G 97 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 97 (196)
++.+|+|.|+|||||||+++.|+++++..+++.|++++.....++..+..+...+..|..++.......+...+... .
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 87 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNT 87 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcccc
Confidence 45789999999999999999999999999999999999877777778888888888888888877766666655432 3
Q ss_pred CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (196)
+..+|+||++....+...+.. ....++.+|||++|++++.+|+..| ..++.+.+.+.+.+|+..+.....++.+.|.
T Consensus 88 ~~~vi~d~~~~~~~~~~~~~~-~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 166 (196)
T 2c95_A 88 SKGFLIDGYPREVQQGEEFER-RIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYE 166 (196)
T ss_dssp CSCEEEESCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999998887776665 4466889999999999999999988 2345556678888999999888888888887
Q ss_pred hcCcEEEEeCCCCceeEE
Q 029252 176 AKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 176 ~~~~~~~id~~~~~e~v~ 193 (196)
....++.||++.++++++
T Consensus 167 ~~~~~~~Id~~~~~e~v~ 184 (196)
T 2c95_A 167 KRGIVRKVNAEGSVDSVF 184 (196)
T ss_dssp HHTCEEEEECCSCHHHHH
T ss_pred hcCcEEEEECCCCHHHHH
Confidence 666678899998887664
No 14
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.95 E-value=1.1e-26 Score=168.83 Aligned_cols=172 Identities=27% Similarity=0.489 Sum_probs=143.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
++|+|.|+|||||||+++.|++++++.+++.|++++.....+++.+..+..++..|...++.....++...+....+..|
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v 80 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW 80 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence 46999999999999999999999999999999999998667777888888888888888888888888887764337889
Q ss_pred EEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-----CC--------------------------
Q 029252 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----QG-------------------------- 147 (196)
Q Consensus 102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-----~~-------------------------- 147 (196)
|+||++....+...+.+. ....|+.+|||++|++++.+|+..|. +|
T Consensus 81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~ 160 (223)
T 2xb4_A 81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSA 160 (223)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEEC
T ss_pred EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccccc
Confidence 999999988777666542 35678999999999999999999882 11
Q ss_pred CCCCcHH-HHHHHHHHHHhcchhHHH---HHHh-----cCcEEEEeCCCCceeEE
Q 029252 148 REDDNVE-TIRKRFKVFLESSLPVVQ---YYEA-----KGKVRKVIFCSPIFILV 193 (196)
Q Consensus 148 r~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~id~~~~~e~v~ 193 (196)
+.+++.+ .+++|+..|+....++.+ .|.. .+.++.||++.++++|+
T Consensus 161 r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~ 215 (223)
T 2xb4_A 161 RADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIK 215 (223)
T ss_dssp CGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHH
Confidence 2233456 899999999999999988 8876 56789999999988765
No 15
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.95 E-value=6.4e-26 Score=162.41 Aligned_cols=177 Identities=49% Similarity=0.906 Sum_probs=142.3
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-cCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (196)
..+.++.+|+|+|+|||||||+++.|++++++.+++.|++++.... .+...++.+..++..|...++.+...++...+.
T Consensus 10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~ 89 (203)
T 1ukz_A 10 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS 89 (203)
T ss_dssp SCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 3445668999999999999999999999999999999999988654 466777888888877887777766665555443
Q ss_pred h---cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchh
Q 029252 95 E---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP 169 (196)
Q Consensus 95 ~---~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~ 169 (196)
. .....+|+||++...++...+.. ....++.+|||++|++++.+|+..| ..++.+++.+.+.+|+..|.....+
T Consensus 90 ~~l~~g~~~~i~dg~~~~~~~~~~~~~-~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~ 168 (203)
T 1ukz_A 90 DNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMP 168 (203)
T ss_dssp HHHHTTCCEEEEETCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHH
T ss_pred hhhccCCCeEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHH
Confidence 2 12368999999998887777666 4455899999999999999999988 2356667788899999999888888
Q ss_pred HHHHHHhcCcEEEEeCCCCceeEE
Q 029252 170 VVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 170 ~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+.++|.....++.||++.++++++
T Consensus 169 ~~~~~~~~~~vi~id~~~~~e~v~ 192 (203)
T 1ukz_A 169 VIEYFETKSKVVRVRCDRSVEDVY 192 (203)
T ss_dssp HHHHHHTTTCEEEEECSSCHHHHH
T ss_pred HHHHHHhcCcEEEEECCCCHHHHH
Confidence 888887666788899999888764
No 16
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.95 E-value=4.1e-26 Score=162.22 Aligned_cols=174 Identities=52% Similarity=0.910 Sum_probs=138.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME---- 94 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---- 94 (196)
++.+|+|.|+|||||||+++.|++++++.+++.|++++..... ++..+..+...+..+...+..+...++...+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 4689999999999999999999999999999999999887654 45667777777777877777665544443332
Q ss_pred hc-CCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchh
Q 029252 95 ES-GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP 169 (196)
Q Consensus 95 ~~-~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~ 169 (196)
.. .+..||+||++....+...+... ....++.+|||++|++++.+|+.+| ..+|.+.+.+.+.+++..|.....+
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP 161 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence 11 37789999999988766555432 2235778999999999999999988 3467777888889999999999889
Q ss_pred HHHHHHhcCcEEEEeCCCCceeEE
Q 029252 170 VVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 170 ~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+.++|...+.++.||++.++++++
T Consensus 162 ~~~~y~~~~~~~~id~~~~~~~v~ 185 (196)
T 1tev_A 162 IIDLYEEMGKVKKIDASKSVDEVF 185 (196)
T ss_dssp HHHHHHHTTCEEEEETTSCHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCHHHHH
Confidence 888898777788999998888764
No 17
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.95 E-value=9.8e-27 Score=166.01 Aligned_cols=173 Identities=39% Similarity=0.750 Sum_probs=139.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G 97 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 97 (196)
++++|+|.|+|||||||+++.|++++++.+++.|++++.....+.+.+..+...+..|...+.......+...+... .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence 45789999999999999999999999999999999999887667777778888888888888877777776655433 4
Q ss_pred CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccC--CCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYE 175 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (196)
+..+|+||++....+...+.. ....++++|||++|++++.+|+.+|.. ++.+++.+.+.+|+..+.....++.++|.
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 169 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGR-RIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYE 169 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999998887777665 444688999999999999999999821 23333456788888888888888777887
Q ss_pred hcCcEEEEeCCCCceeEE
Q 029252 176 AKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 176 ~~~~~~~id~~~~~e~v~ 193 (196)
....+++||++.++++++
T Consensus 170 ~~~~~~~id~~~~~e~v~ 187 (199)
T 2bwj_A 170 TKTQLHKINAEGTPEDVF 187 (199)
T ss_dssp HHSEEEEEETTSCHHHHH
T ss_pred hcCCEEEEECCCCHHHHH
Confidence 666678999988887764
No 18
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.94 E-value=1e-25 Score=164.09 Aligned_cols=171 Identities=32% Similarity=0.579 Sum_probs=140.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
++++|+|.|+|||||||+++.|+++++..+++.|++++.....+++.+..+..++..|...++.....++.+.+....+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~~ 85 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQY 85 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccCC
Confidence 45789999999999999999999999999999999999987777878888888888888888877777676666532367
Q ss_pred eEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc----CC-------------------------CCC
Q 029252 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN----QG-------------------------RED 150 (196)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~----~~-------------------------r~~ 150 (196)
.||+|+++....+...+.. ...++.+|||++|++++.+|+..|. .+ |.+
T Consensus 86 ~~vid~~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~~ 163 (227)
T 1zd8_A 86 SWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRED 163 (227)
T ss_dssp CEEEESCCCSHHHHHHHHT--TSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred CEEEeCCCCCHHHHHHHHH--hcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCCC
Confidence 8999999988777665554 2567899999999999999998771 12 334
Q ss_pred CcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+..+.+.+|+..|.....++.++|...+.++.||++ ++++++
T Consensus 164 ~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~ 205 (227)
T 1zd8_A 164 DKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIW 205 (227)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHH
Confidence 567889999999999999999999876779999998 877764
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.94 E-value=1e-25 Score=159.11 Aligned_cols=170 Identities=34% Similarity=0.654 Sum_probs=137.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
++.+|+|.|+|||||||+++.|++++++.+++.|++++.....+.+.+..+...+..+...++......+...+. .
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----~ 78 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----E 78 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----S
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----C
Confidence 357899999999999999999999999999999999998877777778888888888888888776666666553 2
Q ss_pred eEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhcchhHHHHH
Q 029252 100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQYY 174 (196)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (196)
++|+||++....+...+..+ .+..++.+|||++|++++.+|+..|. .++.+.+.+.+.+|+..+.....++.+.|
T Consensus 79 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~ 158 (186)
T 3cm0_A 79 RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYY 158 (186)
T ss_dssp EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999887765544321 23347899999999999999999882 25677788889999988887777777888
Q ss_pred HhcCcEEEEeCCCCceeEE
Q 029252 175 EAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 175 ~~~~~~~~id~~~~~e~v~ 193 (196)
...+.++.||++.++++++
T Consensus 159 ~~~~~~~~id~~~~~~~v~ 177 (186)
T 3cm0_A 159 EARGVLKRVDGLGTPDEVY 177 (186)
T ss_dssp HHTTCEEEEECCSCHHHHH
T ss_pred HhcCcEEEEECCCCHHHHH
Confidence 7655688999998888764
No 20
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.94 E-value=1.5e-25 Score=162.66 Aligned_cols=171 Identities=32% Similarity=0.616 Sum_probs=138.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G 97 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 97 (196)
++++|+|.|+|||||||+++.|+++++..+++.|++++.....++..+..+..++..|...++.....++.+.+... .
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ 83 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcccc
Confidence 45789999999999999999999999999999999999877778888888888888888888887777676665422 1
Q ss_pred CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc-C------------------------CCCCCc
Q 029252 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-Q------------------------GREDDN 152 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-~------------------------~r~~~~ 152 (196)
..++|+||++...++...+.. ....++++|||++|++++.+|+..|. . .+.++.
T Consensus 84 ~~~~vidg~~~~~~~~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~ 162 (222)
T 1zak_A 84 ENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDT 162 (222)
T ss_dssp HTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCC
T ss_pred CCcEEEECCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCC
Confidence 467888999998877777766 56678999999999999999998771 1 123455
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.+.+.+|+..++....++.+.|.. .++.||++.++++++
T Consensus 163 ~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~ 201 (222)
T 1zak_A 163 EEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVF 201 (222)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHH
Confidence 678888998888877787777743 488999999888764
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.86 E-value=1.1e-19 Score=133.58 Aligned_cols=171 Identities=31% Similarity=0.583 Sum_probs=130.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
++.+|+|.|++||||||+++.|+++++...++.+++++.........+..+...+..+...+.......+...+....+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46799999999999999999999999999999999988765544455556666666777777766666666555433456
Q ss_pred eEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-c---CC-------------------------CCC
Q 029252 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N---QG-------------------------RED 150 (196)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~---~~-------------------------r~~ 150 (196)
.++++|++....+...+.. ...++.++||++|++++.+|+..| . .+ +..
T Consensus 106 ~~il~g~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~ 183 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDK--ICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED 183 (246)
T ss_dssp CEEEESCCCSHHHHHHHHT--TCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGG
T ss_pred eEEEECCCCCHHHHHHHHh--hcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCC
Confidence 7889998877655444443 245789999999999999999876 1 11 223
Q ss_pred CcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
...+.+.+++..|.....++.++|...+.++.||++.+ ++|+
T Consensus 184 ~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~ 225 (246)
T 2bbw_A 184 DKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIW 225 (246)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHH
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHH
Confidence 45678888999998888888899987778999999987 6553
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.85 E-value=1.3e-19 Score=126.40 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC----cchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS----ENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
++|+|.|+|||||||+++.| +++++.+++.+++++....... ............ .........+...+....
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 77 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTSN 77 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhcC
Confidence 68999999999999999999 9999999999999998755421 112222222211 112234455555553345
Q ss_pred CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCC--CCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE--DDNVETIRKRFKVFLESSLPVVQYYE 175 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (196)
+..+|+||+ ....+...+.+ ....++.+|||++|++++.+|+..| +++ ..+.+.+.+++..... .+ ...|.
T Consensus 78 ~~~vi~dg~-~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~r~~~~~~--~~-~~~~~ 150 (179)
T 3lw7_A 78 HDLVVFDGV-RSLAEVEEFKR-LLGDSVYIVAVHSPPKIRYKRMIER--LRSDDSKEISELIRRDREELK--LG-IGEVI 150 (179)
T ss_dssp CSCEEEECC-CCHHHHHHHHH-HHCSCEEEEEEECCHHHHHHHHHTC--C----CCCHHHHHHHHHHHHH--HT-HHHHH
T ss_pred CCeEEEeCC-CCHHHHHHHHH-HhCCCcEEEEEECCHHHHHHHHHhc--cCCCCcchHHHHHHHHHhhhc--cC-hHhHH
Confidence 888999998 88888787777 4446788999999999999999999 432 3556667666533221 11 22333
Q ss_pred hcCcEEEEeCCCCceeEE
Q 029252 176 AKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 176 ~~~~~~~id~~~~~e~v~ 193 (196)
.... ++||++.++++++
T Consensus 151 ~~ad-~vId~~~~~~~~~ 167 (179)
T 3lw7_A 151 AMAD-YIITNDSNYEEFK 167 (179)
T ss_dssp HTCS-EEEECCSCHHHHH
T ss_pred HhCC-EEEECCCCHHHHH
Confidence 3333 4677777777653
No 23
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.77 E-value=1.3e-17 Score=116.80 Aligned_cols=136 Identities=20% Similarity=0.286 Sum_probs=90.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH-HhCCcEecHHHHHHHHHHcCCc-----chHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE-HFGYTHLSAGDLLRAEIKSGSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~-~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (196)
||.+|+|.|+|||||||+++.|++ .+++.+++.|. ++......+. +....... ........+...+
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~-~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l 72 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSIL 72 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH-HHHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHH
Confidence 467899999999999999999999 68899999855 4444333211 11111110 1122344455555
Q ss_pred Hh-cCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029252 94 EE-SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE 165 (196)
Q Consensus 94 ~~-~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~ 165 (196)
.. ..+..+|+|+++....+...+.++ ....+..+|||++|++++.+|+..| +....+.+.+.++++.|..
T Consensus 73 ~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~i~~~~~~~~~ 145 (181)
T 1ly1_A 73 YGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMRE 145 (181)
T ss_dssp TSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC--GGGCCCHHHHHHHHHHHHH
T ss_pred hhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcc--ccCCCCHHHHHHHHHHhhc
Confidence 22 247899999988877666655532 1122346999999999999999998 3335567778887777764
No 24
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.77 E-value=1.8e-17 Score=118.30 Aligned_cols=151 Identities=16% Similarity=0.220 Sum_probs=98.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHH---HHHHHHHHHHhc
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV---TIKLLQKAMEES 96 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~ 96 (196)
++++|+|.|+|||||||+++.|++.++..+++.|++..... ......+....... ....+.+.+ .
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~--~ 84 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL--A 84 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH--T
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH--h
Confidence 45789999999999999999999999999999887642210 00111122222211 122333333 2
Q ss_pred CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (196)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (196)
.+..+|+|+..........+.. ....+..+|||++|++++.+|+.+| ++.....+.+..++..+. ++ + .
T Consensus 85 ~~~~vivd~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~R--~~~~~~~~~~~~~~~~~~----~~---~-~ 153 (202)
T 3t61_A 85 SREPVVVSCSALKRSYRDKLRE-SAPGGLAFVFLHGSESVLAERMHHR--TGHFMPSSLLQTQLETLE----DP---R-G 153 (202)
T ss_dssp SSSCCEEECCCCSHHHHHHHHH-TSTTCCEEEEEECCHHHHHHHHHHH--HSSCCCHHHHHHHHHHCC----CC---T-T
T ss_pred cCCCEEEECCCCCHHHHHHHHH-hcCCCeEEEEEeCCHHHHHHHHHHh--hccCCCHHHHHHHHHhcC----CC---C-C
Confidence 4778999988777777777776 4455678999999999999999999 222223444444443332 21 1 2
Q ss_pred cCcEEEEeCCCCceeEE
Q 029252 177 KGKVRKVIFCSPIFILV 193 (196)
Q Consensus 177 ~~~~~~id~~~~~e~v~ 193 (196)
....++||++.++++++
T Consensus 154 ~~~~~~Id~~~~~~e~~ 170 (202)
T 3t61_A 154 EVRTVAVDVAQPLAEIV 170 (202)
T ss_dssp STTEEEEESSSCHHHHH
T ss_pred CCCeEEEeCCCCHHHHH
Confidence 22477899998887654
No 25
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.77 E-value=3.1e-17 Score=117.11 Aligned_cols=159 Identities=16% Similarity=0.270 Sum_probs=92.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH------------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT------------ 85 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 85 (196)
|+.+|++.|+.||||||+++.|++.+ +..++.... +++++.++.+...+..+...+....
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~ 74 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHL 74 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998 343332211 2345556666666655554443221
Q ss_pred HHHHHHHHHhcCCCeEEEeccC------------CCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252 86 IKLLQKAMEESGNDKFLIDGFP------------RNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (196)
Q Consensus 86 ~~~~~~~l~~~~~~~~iidg~~------------~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~ 151 (196)
...+...+. .+..||.|.|. ...+....+... ....||++|||++|++++.+|+.+| ++..+
T Consensus 75 ~~~i~p~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r--~~~~d 150 (205)
T 4hlc_A 75 VLKVIPALK--EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN--SRDQN 150 (205)
T ss_dssp HHTHHHHHH--TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC--------
T ss_pred HHHHHHHHH--cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhc--CCccc
Confidence 112222333 47888889642 112222333221 4578999999999999999999988 33211
Q ss_pred ---c-HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 152 ---N-VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 152 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
. ...+.+++... +..+.+. ....+.+||++.++++|.
T Consensus 151 r~e~~~~~f~~~v~~~---Y~~l~~~--~~~~~~~IDa~~~~e~V~ 191 (205)
T 4hlc_A 151 RLDQEDLKFHEKVIEG---YQEIIHN--ESQRFKSVNADQPLENVV 191 (205)
T ss_dssp -CCHHHHHHHHHHHHH---HHHHHHS--CCTTEEEEETTSCHHHHH
T ss_pred chhccCHHHHHHHHHH---HHHHHHh--CCCCEEEEECCCCHHHHH
Confidence 1 11222332211 1122211 233699999999998764
No 26
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.76 E-value=3.2e-17 Score=119.16 Aligned_cols=162 Identities=19% Similarity=0.294 Sum_probs=97.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHH-------
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL------- 89 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 89 (196)
.++.+|+|.|+|||||||+++.|++.++ ..++... .+.+++.++.+..++..+.........-++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~ 97 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH 97 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999986 3444321 123445566667766655533322211111
Q ss_pred -----HHHHHhcCCCeEEEe----------ccCCCH--HHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhcc--CCC
Q 029252 90 -----QKAMEESGNDKFLID----------GFPRNE--ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN--QGR 148 (196)
Q Consensus 90 -----~~~l~~~~~~~~iid----------g~~~~~--~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~--~~r 148 (196)
...+. .+..||+| |+++.. .....+... ....|+.+|||++|++++.+|+.+|. ..+
T Consensus 98 ~~~~i~~~l~--~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr 175 (229)
T 4eaq_A 98 LVLKVIPALK--EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNR 175 (229)
T ss_dssp CCCCCHHHHH--TTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----C
T ss_pred HHHHHHHHHH--CCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccc
Confidence 11122 36789999 765443 332333322 56689999999999999999999981 122
Q ss_pred CCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.+.....+.+++...+. .+.+.| ...+++||++.++++++
T Consensus 176 ~e~~~~~~~~rv~~~y~---~l~~~~--~~~~~vIDa~~s~eev~ 215 (229)
T 4eaq_A 176 LDQEDLKFHEKVIEGYQ---EIIHNE--SQRFKSVNADQPLENVV 215 (229)
T ss_dssp CCHHHHHHHHHHHHHHH---HHTTTC--TTTEEEEETTSCHHHHH
T ss_pred hhhhhHHHHHHHHHHHH---HHHHhC--CCCEEEEeCCCCHHHHH
Confidence 22223344444433322 222222 23689999999998764
No 27
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.75 E-value=5.4e-17 Score=114.89 Aligned_cols=153 Identities=17% Similarity=0.264 Sum_probs=91.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH-----------HH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------IK 87 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 87 (196)
++|+|+|+|||||||+++.|++++ ++.+++.+. ......+..+...+..|...+.... ..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 888887642 1223334445555544543333111 11
Q ss_pred HHHHHHHhcCCCeEEEe----------ccCCCH--HHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252 88 LLQKAMEESGNDKFLID----------GFPRNE--ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (196)
Q Consensus 88 ~~~~~l~~~~~~~~iid----------g~~~~~--~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~ 153 (196)
.+...+. .+..+|+| |++... .....+..+ ....++.+|||++|++++.+|+.+| ++.+ ..
T Consensus 75 ~i~~~l~--~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r--~~~~-~~ 149 (195)
T 2pbr_A 75 KIIPDLK--RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK--NRFE-NK 149 (195)
T ss_dssp THHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT--TCCC-CH
T ss_pred HHHHHHh--CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc--Cccc-hH
Confidence 2222232 36778888 333322 222222211 2346899999999999999999876 4443 33
Q ss_pred HHHHHHHH-HHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 154 ETIRKRFK-VFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 154 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+ +.+++. .|. .....| ..+++||++.++++++
T Consensus 150 ~-~~~~~~~~~~----~~~~~~---~~~~~Id~~~~~~~~~ 182 (195)
T 2pbr_A 150 E-FLEKVRKGFL----ELAKEE---ENVVVIDASGEEEEVF 182 (195)
T ss_dssp H-HHHHHHHHHH----HHHHHS---TTEEEEETTSCHHHHH
T ss_pred H-HHHHHHHHHH----HHHhhC---CCEEEEECCCCHHHHH
Confidence 3 444442 232 222222 3578999988887654
No 28
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.75 E-value=2.7e-17 Score=116.35 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=74.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
++.+|+|.|+|||||||+++.|++++++.+++.|++..................+.. .........+...+. .+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~g~ 78 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ--SGQ 78 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH--TTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh--CCC
Confidence 568999999999999999999999999999999776544322100001100000000 000111222333333 477
Q ss_pred eEEEeccCCCHHHHHHH---HhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 100 KFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 100 ~~iidg~~~~~~~~~~~---~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.+|+|+++........+ .. ....++++|||++|++++.+|+.+|
T Consensus 79 ~vi~d~~~~~~~~~~~~~~l~~-~~~~~~~~v~l~~~~e~~~~R~~~R 125 (193)
T 2rhm_A 79 SLIMESNFRVDLDTERMQNLHT-IAPFTPIQIRCVASGDVLVERILSR 125 (193)
T ss_dssp CEEEEECCCHHHHHHHHHHHHH-HSCCEEEEEEEECCHHHHHHHHHHH
T ss_pred eEEEecCCCCHHHHHHHHHHHH-hcCCeEEEEEEeCCHHHHHHHHHHh
Confidence 89999987322122222 33 4556788999999999999999988
No 29
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=1.8e-17 Score=118.03 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=94.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
+..+|+|.|+|||||||+++.|++.+++.+++.|++..... +......+... +......+...++.... ...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~i~~~~~~~---~~~~~~~~e~~~l~~l~---~~~ 95 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKTVGELFTER---GEAGFRELERNMLHEVA---EFE 95 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHHHH---HHHHHHHHHHHHHHHHT---TCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCcHHHHHHhc---ChHHHHHHHHHHHHHHh---hcC
Confidence 45689999999999999999999999999999999887653 22222222111 11111112222333322 255
Q ss_pred eEEEe---ccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHh-hc-cCCC-CCCcHHHHHHHHHHHHhcchhHHHH
Q 029252 100 KFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL-NR-NQGR-EDDNVETIRKRFKVFLESSLPVVQY 173 (196)
Q Consensus 100 ~~iid---g~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~-~R-~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (196)
.+|++ |.+...+....+.. ++.+|||++|++++.+|+. .| .++. .....+.+.+++........+ .
T Consensus 96 ~~vi~~ggg~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~---~ 167 (199)
T 3vaa_A 96 NVVISTGGGAPCFYDNMEFMNR-----TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAP---F 167 (199)
T ss_dssp SEEEECCTTGGGSTTHHHHHHH-----HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHH---H
T ss_pred CcEEECCCcEEccHHHHHHHHc-----CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHH---H
Confidence 67777 34444444444443 5689999999999999998 44 1111 233445555655555543333 4
Q ss_pred HHhcCcEEEEeCCC-CceeEE
Q 029252 174 YEAKGKVRKVIFCS-PIFILV 193 (196)
Q Consensus 174 ~~~~~~~~~id~~~-~~e~v~ 193 (196)
|.. . .+.||++. ++++++
T Consensus 168 y~~-a-d~~Idt~~~s~ee~~ 186 (199)
T 3vaa_A 168 YTQ-A-QYIFNADELEDRWQI 186 (199)
T ss_dssp HTT-S-SEEEECCCCSSHHHH
T ss_pred Hhh-C-CEEEECCCCCHHHHH
Confidence 544 3 35677765 777654
No 30
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.73 E-value=5.4e-17 Score=112.75 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=88.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
++|+|.|+|||||||+++.|++++++.+++.|.+..... . .... ... ...+. .+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~----~~~~------------~~~-~~~l~--~~~~v 58 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----G----NEKL------------FEH-FNKLA--DEDNV 58 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----C----HHHH------------HHH-HHHHT--TCCSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----H----HHHH------------HHH-HHHHH--hCCCe
Confidence 479999999999999999999999999998876554421 0 0000 011 11222 35566
Q ss_pred EEeccC---------------CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029252 102 LIDGFP---------------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES 166 (196)
Q Consensus 102 iidg~~---------------~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~ 166 (196)
|.|.+. ........+.. ....++.+|||++|++++.+|+.+| +++....+.+....+.|.
T Consensus 59 i~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~l~~~~e~~~~R~~~r--~r~~~~~~~~~~~~~~~~-- 133 (173)
T 3kb2_A 59 IIDRFVYSNLVYAKKFKDYSILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVR--GDEYIEGKDIDSILELYR-- 133 (173)
T ss_dssp EEESCHHHHHHHTTTBTTCCCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHH--SCSCCCHHHHHHHHHHHH--
T ss_pred EEeeeecchHHHHHHHHHhhHhhHHHHHHHhc-cCCCCCEEEEEeCCHHHHHHHHHhc--CCcchhhhHHHHHHHHHH--
Confidence 667321 12223333333 3456889999999999999999998 555555444443333333
Q ss_pred chhHHHHHHhcCcEEEEeCC-CCceeEE
Q 029252 167 SLPVVQYYEAKGKVRKVIFC-SPIFILV 193 (196)
Q Consensus 167 ~~~~~~~~~~~~~~~~id~~-~~~e~v~ 193 (196)
...+.|. ...++||++ .++++++
T Consensus 134 --~~~~~~~--~~~~~id~~~~~~~ev~ 157 (173)
T 3kb2_A 134 --EVMSNAG--LHTYSWDTGQWSSDEIA 157 (173)
T ss_dssp --HHHHTCS--SCEEEEETTTSCHHHHH
T ss_pred --HHHhhcC--CCEEEEECCCCCHHHHH
Confidence 3333332 357899998 4887764
No 31
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.73 E-value=7.2e-17 Score=121.90 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=102.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCCc-----chHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (196)
||.+|+|.|+|||||||+++.|++++ ++.+++.|+ ++........ +...... .........+...+
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~-~r~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~l 72 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAKSIL 72 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCCC---CCHHHHH-------HHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccH-HHHHhccCCcccccccchhhhh-------HHHHHHHHHHHHHH
Confidence 46789999999999999999999985 889999984 5544332111 1100000 00122234444444
Q ss_pred Hh-cCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhH
Q 029252 94 EE-SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV 170 (196)
Q Consensus 94 ~~-~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 170 (196)
.. ..+..+|+|+++....+...+.++ ....+..+|||++|.+++.+|+.+| +....+.+.+.++++.|.......
T Consensus 73 ~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~e~i~~~~~~~~~~~~~~ 150 (301)
T 1ltq_A 73 YGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMREYLGLP 150 (301)
T ss_dssp TSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC--GGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred hhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc--cCCCCCHHHHHHHHHHHhcccCCc
Confidence 21 247889999988887766665542 2223457999999999999999998 434556788888887776422110
Q ss_pred HHHHH---hcCcEEEEeCCCCceeE
Q 029252 171 VQYYE---AKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 171 ~~~~~---~~~~~~~id~~~~~e~v 192 (196)
.|. .....+.+|.+.+++++
T Consensus 151 --~~~~~~~~~~~i~iD~dgtl~~~ 173 (301)
T 1ltq_A 151 --VYNGTPGKPKAVIFDVDGTLAKM 173 (301)
T ss_dssp --CCCCCTTSCEEEEEETBTTTBCC
T ss_pred --ceeccccccceEEEeCCCCcccc
Confidence 011 11246678887776654
No 32
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.73 E-value=2.8e-16 Score=111.45 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=89.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH-------HHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------IKLLQK 91 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 91 (196)
++|+|+|++||||||+++.|++.+ ++.++..+. ..+.+.+..+...+..+...+.... ...+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999 887775422 2233445555555554444333211 111122
Q ss_pred HHHhc--CCCeEEEecc----------C--CCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHH
Q 029252 92 AMEES--GNDKFLIDGF----------P--RNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 155 (196)
Q Consensus 92 ~l~~~--~~~~~iidg~----------~--~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~ 155 (196)
+... .+..+|+|.+ + ........+... ....|+.+|||++|++++.+|+..| ++.+.. .
T Consensus 75 -i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R--~~~~~~--~ 149 (197)
T 2z0h_A 75 -IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFEKR--E 149 (197)
T ss_dssp -HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----CCCCCH--H
T ss_pred -HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhcc--CcccHH--H
Confidence 2111 2677888843 2 122222222211 4557999999999999999999988 554443 3
Q ss_pred HHHHHH-HHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 156 IRKRFK-VFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 156 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+.+++. .|. .+.+.+ ...+++||++.++++++
T Consensus 150 ~~~~~~~~~~----~~~~~~--~~~~~~Id~~~~~e~~~ 182 (197)
T 2z0h_A 150 FLERVREGYL----VLAREH--PERIVVLDGKRSIEEIH 182 (197)
T ss_dssp HHHHHHHHHH----HHHHHC--TTTEEEEETTSCHHHHH
T ss_pred HHHHHHHHHH----HHHHhC--CCCEEEEeCCCCHHHHH
Confidence 333332 332 232322 34688999999888764
No 33
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.73 E-value=2.1e-16 Score=113.45 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=97.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCCcchHHHHHHHHcCC--CCCH-HHH-------
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPS-EVT------- 85 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~------- 85 (196)
+++++|+|.|++||||||+++.|++.++ ..++.... +.+++.++.+..++..+. .... ...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R 77 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPSDEPMAADTELLLMFAAR 77 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999884 33433211 235566677777776553 1222 111
Q ss_pred ----HHHHHHHHHhcCCCeEEEeccC------------CCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhcc-C
Q 029252 86 ----IKLLQKAMEESGNDKFLIDGFP------------RNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-Q 146 (196)
Q Consensus 86 ----~~~~~~~l~~~~~~~~iidg~~------------~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~-~ 146 (196)
...+..++. .+..+|.|.|. ...+....+... ....||++|||++|++++.+|+..|. .
T Consensus 78 ~~~~~~~i~p~l~--~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~ 155 (213)
T 4edh_A 78 AQHLAGVIRPALA--RGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL 155 (213)
T ss_dssp HHHHHHTHHHHHH--TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSC
T ss_pred HHHHHHHHHHHHH--CCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 112222333 47889999642 112333333321 46789999999999999999999882 1
Q ss_pred CCCCCcHHHHHHHH-HHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 147 GREDDNVETIRKRF-KVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 147 ~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.+.+.....+.+++ +.|. .+.+.| ...+++||++.+++++.
T Consensus 156 dr~E~~~~~~~~rv~~~y~----~l~~~~--~~~~~vIDa~~s~eeV~ 197 (213)
T 4edh_A 156 DRFEQEDRRFFEAVRQTYL----QRAAQA--PERYQVLDAGLPLAEVQ 197 (213)
T ss_dssp CTTTTSCHHHHHHHHHHHH----HHHHHC--TTTEEEEETTSCHHHHH
T ss_pred CcccccHHHHHHHHHHHHH----HHHHHC--CCcEEEEeCCCCHHHHH
Confidence 22222112333333 3333 333333 24699999999998764
No 34
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.73 E-value=3.1e-17 Score=118.58 Aligned_cols=161 Identities=15% Similarity=0.188 Sum_probs=94.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH-------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT------- 85 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 85 (196)
++.+|+|.|++||||||+++.|++.++ ..++.. +. +.+++.++.+++++..+...+....
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R 97 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFAGR 97 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999884 333321 11 2355667777777766644333221
Q ss_pred ----HHHHHHHHHhcCCCeEEEeccCC------------CHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhcc-C
Q 029252 86 ----IKLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-Q 146 (196)
Q Consensus 86 ----~~~~~~~l~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~-~ 146 (196)
...+...+. .+..||+|.|.. ..+....+... ....||++|||++|++++.+|+.+|. .
T Consensus 98 ~~~~~~~i~p~l~--~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~ 175 (227)
T 3v9p_A 98 REHLALVIEPALA--RGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMP 175 (227)
T ss_dssp HHHHHHTHHHHHH--TTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC
T ss_pred HHHHHHHHHHHHH--cCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCc
Confidence 112223333 478899996421 12233333221 45789999999999999999999882 1
Q ss_pred CCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 147 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.+.+.....+.++....+ ..+.+.| ...+++||++.++++|.
T Consensus 176 dr~E~~~~ef~~rv~~~Y---~~la~~~--~~~~~vIDa~~s~eeV~ 217 (227)
T 3v9p_A 176 DKFESESDAFFARTRAEY---LRRAQEA--PHRFVIVDSSEPIAQIR 217 (227)
T ss_dssp ---CCHHHHHHHHHHHHH---HHHHHHC--TTTEEEEETTSCHHHHH
T ss_pred cchhhhhHHHHHHHHHHH---HHHHHHh--cCCEEEEeCCCCHHHHH
Confidence 222221223333332221 2333333 34699999999998764
No 35
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.72 E-value=1.5e-16 Score=112.38 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHH-cCCcchHHHHHHHHcCCCCCH--HHHHH----HH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPS--EVTIK----LL 89 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~ 89 (196)
++|+|.|+|||||||+++.|+++++ +.+++.++++++... .....+. .. .+...+. ..... .+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR--DE---MRKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH--HH---HTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch--hh---hhcCCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999997 788888888876652 2111110 00 0111111 11111 12
Q ss_pred HHHHHhcCCCeEEEeccCCCHHH--------HHHHHhhcCCCCcEEEEEEcCHHHHHHH-Hhh--ccCCC-CCCcHHHHH
Q 029252 90 QKAMEESGNDKFLIDGFPRNEEN--------RAAFEAVTKIEPEFVLFFDCSEEEMERR-ILN--RNQGR-EDDNVETIR 157 (196)
Q Consensus 90 ~~~l~~~~~~~~iidg~~~~~~~--------~~~~~~~~~~~~~~~i~l~~~~~~~~~R-~~~--R~~~r-~~~~~~~~~ 157 (196)
...+....+..||+|+++....+ ...+.. . .++.+|||++|++++.+| +.+ | ++ +....+.+.
T Consensus 77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~-~--~~~~vi~l~~~~~~~~~rr~~~~~R--~~~~~~~~~~~~ 151 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE-I--NPSVIFLLEADPKIILSRQKRDTTR--NRNDYSDESVIL 151 (194)
T ss_dssp HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH-H--CCSEEEEEECCHHHHHHHHHHCTTT--CCCCCCSHHHHH
T ss_pred HHHhhccCCCEEEECCchhhccccccccCCCHHHHHh-c--CCCEEEEEeCCHHHHHHHHHhhccc--CCCCccCHHHHH
Confidence 22221125788999986321111 222332 1 478999999999998866 666 6 54 333333322
Q ss_pred HHHHHHHhcchhHHHHHHhcCcEEEE-eCCCCceeEE
Q 029252 158 KRFKVFLESSLPVVQYYEAKGKVRKV-IFCSPIFILV 193 (196)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~e~v~ 193 (196)
.+ +............|. ...+++| |++.++++++
T Consensus 152 ~~-~~~~~~~~~~~~~~~-~~~~~~I~d~~~~~e~v~ 186 (194)
T 1nks_A 152 ET-INFARYAATASAVLA-GSTVKVIVNVEGDPSIAA 186 (194)
T ss_dssp HH-HHHHHHHHHHHHHHH-TCEEEEEECCSSCHHHHH
T ss_pred HH-HHHHHHHHHHHHHhc-CCcEEEEeCCCCCHHHHH
Confidence 11 112222223333332 2457888 9888887664
No 36
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.72 E-value=2.8e-16 Score=112.73 Aligned_cols=159 Identities=14% Similarity=0.252 Sum_probs=95.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC---C-cEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHH-HH----
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---Y-THLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE-VT---- 85 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~---~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~---- 85 (196)
++.+|++.|++||||||+++.|++.+. . .++.. +. +.+++.++.+..++... ...... ..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~ 75 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY 75 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence 468999999999999999999999883 3 22211 11 23556667777776521 122221 11
Q ss_pred -------HHHHHHHHHhcCCCeEEEeccC------------CCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 86 -------IKLLQKAMEESGNDKFLIDGFP------------RNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 86 -------~~~~~~~l~~~~~~~~iidg~~------------~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
...+..++. .+..||.|.|. ...+....+... ....||++|||++|++++.+|+.+|
T Consensus 76 A~R~~~~~~~i~paL~--~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R 153 (213)
T 4tmk_A 76 AARVQLVETVIKPALA--NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR 153 (213)
T ss_dssp HHHHHHHHHTHHHHHH--TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 122333333 48889999642 112333333321 4678999999999999999999999
Q ss_pred c-CCCCCCcHHHHHHHHH-HHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 145 N-QGREDDNVETIRKRFK-VFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 145 ~-~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
. ..+.+.....+.+++. .|. .+.+ ....+++||++.++++|.
T Consensus 154 ~~~dr~E~~~~~f~~rv~~~y~----~la~---~~~~~~vIDa~~s~eeV~ 197 (213)
T 4tmk_A 154 GELDRIEQESFDFFNRTRARYL----ELAA---QDKSIHTIDATQPLEAVM 197 (213)
T ss_dssp SSCCTTTTSCHHHHHHHHHHHH----HHHH---TCTTEEEEETTSCHHHHH
T ss_pred CCccchhhhHHHHHHHHHHHHH----HHHH---HCCcEEEECCCCCHHHHH
Confidence 1 1222221122333332 332 2222 225699999999998764
No 37
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.71 E-value=8e-16 Score=106.95 Aligned_cols=153 Identities=19% Similarity=0.269 Sum_probs=88.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (196)
++|+|.|+|||||||+++.|++++++.+++.|++.+.. . +......+.. .+......+....+. .+. ...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~-~-g~~~~~~~~~---~~~~~~~~~~~~~~~-~l~---~~~~ 73 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT-S-GMTVADVVAA---EGWPGFRRRESEALQ-AVA---TPNR 73 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH-H-CSCHHHHHHH---HHHHHHHHHHHHHHH-HHC---CSSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH-h-CCCHHHHHHH---cCHHHHHHHHHHHHH-Hhh---cCCe
Confidence 57999999999999999999999999999999887765 2 2222221110 000000111111222 222 3345
Q ss_pred EEe-c--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHh--hccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252 102 LID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL--NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (196)
Q Consensus 102 iid-g--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~--~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (196)
|++ | ..........+.. ++.+|||++|++++.+|+. .|...++....+...+++..+..... ..|..
T Consensus 74 vi~~g~~~~~~~~~~~~l~~-----~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~ 145 (173)
T 1e6c_A 74 VVATGGGMVLLEQNRQFMRA-----HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLRERE---ALYQD 145 (173)
T ss_dssp EEECCTTGGGSHHHHHHHHH-----HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHH---HHHHH
T ss_pred EEECCCcEEeCHHHHHHHHc-----CCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHH---HHHHh
Confidence 554 4 2233333444433 4689999999999999998 66223343333344444544443222 23433
Q ss_pred cCcEEEEeCC-CCceeEE
Q 029252 177 KGKVRKVIFC-SPIFILV 193 (196)
Q Consensus 177 ~~~~~~id~~-~~~e~v~ 193 (196)
..++||++ .++++++
T Consensus 146 --~~~~Id~~~~~~~~~~ 161 (173)
T 1e6c_A 146 --VAHYVVDATQPPAAIV 161 (173)
T ss_dssp --HCSEEEETTSCHHHHH
T ss_pred --CcEEEECCCCCHHHHH
Confidence 24578887 6777653
No 38
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.71 E-value=8.5e-18 Score=118.77 Aligned_cols=158 Identities=17% Similarity=0.235 Sum_probs=90.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCC---cchHHHHHHHHcCCCCCH---HHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGS---ENGTMIQNMIKEGKIVPS---EVTIKLL 89 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~ 89 (196)
+++|+|.|+|||||||+++.|+++++ +.+++.+++++....... .... + .. ... ......+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~-~------~~-~~~~~~~~~~~~~ 74 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQ-M------RK-MDPETQKRIQKMA 74 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGG-G------SS-CCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHH-H------hc-CCHHHHHHHHHHH
Confidence 57899999999999999999999998 899999998887643321 1110 0 00 111 1111122
Q ss_pred HHHHHh-cCCCeEEEeccCCCH--HHH------HHHHhhcCCCCcEEEEEEcCHHHHHH-HHhh--ccCCCCCCcHHHHH
Q 029252 90 QKAMEE-SGNDKFLIDGFPRNE--ENR------AAFEAVTKIEPEFVLFFDCSEEEMER-RILN--RNQGREDDNVETIR 157 (196)
Q Consensus 90 ~~~l~~-~~~~~~iidg~~~~~--~~~------~~~~~~~~~~~~~~i~l~~~~~~~~~-R~~~--R~~~r~~~~~~~~~ 157 (196)
...+.. ..+..+|+|+++... ... ..+.. . .++++|||++|++++.+ |+.. | +++....+.+.
T Consensus 75 ~~~i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~l~~~~~~~~~rRl~~~~R--~r~~~~~~~~~ 149 (192)
T 1kht_A 75 GRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE-L--NPDLIIVVETTGDEILMRRMSDETR--VRDLDTASTIE 149 (192)
T ss_dssp HHHHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH-H--CCSEEEEEECCHHHHHHHHHTSSSC--SSSCCCHHHHH
T ss_pred HHHHHhhccCCeEEEccceeccccccccccCcHHHHhc-c--CCCEEEEEeCCHHHHHHHHhhhccc--CCCcCCHHHHH
Confidence 222211 135679999865311 000 12222 1 36789999999999996 8887 6 56555555544
Q ss_pred HHHHHHHhcchhHHHHHHhcCcEEEE-eCCCCceeEE
Q 029252 158 KRFKVFLESSLPVVQYYEAKGKVRKV-IFCSPIFILV 193 (196)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~e~v~ 193 (196)
.+... ..........|.. ..++.+ |.+.++++++
T Consensus 150 ~~~~~-~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~ 184 (192)
T 1kht_A 150 QHQFM-NRCAAMSYGVLTG-ATVKIVQNRNGLLDQAV 184 (192)
T ss_dssp HHHHH-HHHHHHHHHHHHC-CEEEEEECCTTCHHHHH
T ss_pred HHHHH-HHHHHHHHHHhcC-CcEEEEeCCCCCHHHHH
Confidence 33322 2222222333332 345555 4444576654
No 39
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.70 E-value=2.8e-16 Score=110.47 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=89.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (196)
+..|+|.|+|||||||+++.|++++++.+++.|++...... ......+... +...........+..... ....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~~~~~~~~~---g~~~~~~~~~~~~~~~~~--~~~~ 77 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--ADIAWIFEME---GEAGFRRREREMIEALCK--LDNI 77 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SCHHHHHHHH---HHHHHHHHHHHHHHHHHH--SSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CChhhHHHHh---CHHHHHHHHHHHHHHHHh--cCCc
Confidence 56899999999999999999999999999999998776532 2222211111 111111222333333322 2344
Q ss_pred EEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH--hhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252 101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI--LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (196)
Q Consensus 101 ~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~--~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (196)
+|..| ..........+.. ...+|||++|++++.+|+ ..+ ..|+........+++........+ .|..
T Consensus 78 vi~~gg~~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~-~~rp~~~~~~~~~~l~~~~~~r~~---~y~~ 148 (185)
T 3trf_A 78 ILATGGGVVLDEKNRQQISE-----TGVVIYLTASIDTQLKRIGQKGE-MRRPLFIKNNSKEKLQQLNEIRKP---LYQA 148 (185)
T ss_dssp EEECCTTGGGSHHHHHHHHH-----HEEEEEEECCHHHHHHHHHCCTT-CSSCCCCCHHHHHHHHHHHHHHHH---HHHH
T ss_pred EEecCCceecCHHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCC-CCCCCCCCCCHHHHHHHHHHHHHH---HHhh
Confidence 44444 3344444555544 237999999999999999 443 234443333333444433332223 3433
Q ss_pred cCcEEEEeCCC-CceeEE
Q 029252 177 KGKVRKVIFCS-PIFILV 193 (196)
Q Consensus 177 ~~~~~~id~~~-~~e~v~ 193 (196)
... ++||++. ++++++
T Consensus 149 ~ad-~~Idt~~~~~~e~~ 165 (185)
T 3trf_A 149 MAD-LVYPTDDLNPRQLA 165 (185)
T ss_dssp HCS-EEEECTTCCHHHHH
T ss_pred cCC-EEEECCCCCHHHHH
Confidence 233 4677765 666553
No 40
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.69 E-value=1.8e-16 Score=115.30 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=91.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC---CCCCH--HH--H-----
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG---KIVPS--EV--T----- 85 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~--~----- 85 (196)
..++.+|+|.|++||||||+++.|++.++...++...+++. +.+++.++.+..++..+ ..... .. +
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~ 101 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARV 101 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHH
Confidence 34578999999999999999999999884221210011111 23556677777766422 11221 11 1
Q ss_pred ---HHHHHHHHHhcCCCeEEEeccC------------CCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhcc-CC
Q 029252 86 ---IKLLQKAMEESGNDKFLIDGFP------------RNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-QG 147 (196)
Q Consensus 86 ---~~~~~~~l~~~~~~~~iidg~~------------~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~-~~ 147 (196)
...+...+. .+..||.|.|. ...+....+... ....||++|||++|++++.+|+.+|. ..
T Consensus 102 ~~~~~~I~paL~--~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~d 179 (236)
T 3lv8_A 102 QLVENVIKPALA--RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELD 179 (236)
T ss_dssp HHHHHTHHHHHH--TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCC
T ss_pred HHHHHHHHHHHH--cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcc
Confidence 122333333 47889999542 112222222221 45789999999999999999999881 12
Q ss_pred CCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 148 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+.+.....+.+++...+. .+.+ ....+++||++.++++|.
T Consensus 180 r~E~~~~~~~~rv~~~y~---~la~---~~~~~~vIDa~~sieeV~ 219 (236)
T 3lv8_A 180 RIEKMDISFFERARERYL---ELAN---SDDSVVMIDAAQSIEQVT 219 (236)
T ss_dssp TTTTSCHHHHHHHHHHHH---HHHH---HCTTEEEEETTSCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHH---HHHH---HCCCEEEEeCCCCHHHHH
Confidence 222211233333332221 2222 222399999999998764
No 41
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.69 E-value=1.3e-15 Score=108.54 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=90.7
Q ss_pred hcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHH-------HH
Q 029252 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-------VT 85 (196)
Q Consensus 13 ~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 85 (196)
...+...++.+|+|.|++||||||+++.|+..+|..+++.+++...... .....+....+. ..
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~ 90 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI----------ATMQRGIPLTDEDRWPWLRSL 90 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH----------HHHHTTCCCCHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH----------HHHhcCCCCCCcccccHHHHH
Confidence 3444555678999999999999999999999999999988775321100 000111111111 11
Q ss_pred HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029252 86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE 165 (196)
Q Consensus 86 ~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~ 165 (196)
...+...+. .+..+|+|...........+.+ ......+|||++|++++.+|+.+| +......+.+..++..+.
T Consensus 91 ~~~~~~~~~--~g~~viid~~~~~~~~~~~l~~--~~~~~~vv~l~~~~e~l~~Rl~~R--~~~~~~~~~l~~~~~~~~- 163 (200)
T 4eun_A 91 AEWMDARAD--AGVSTIITCSALKRTYRDVLRE--GPPSVDFLHLDGPAEVIKGRMSKR--EGHFMPASLLQSQLATLE- 163 (200)
T ss_dssp HHHHHHHHH--TTCCEEEEECCCCHHHHHHHTT--SSSCCEEEEEECCHHHHHHHHTTC--SCCSSCGGGHHHHHHHCC-
T ss_pred HHHHHHHHh--cCCCEEEEchhhhHHHHHHHHH--hCCceEEEEEeCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhC-
Confidence 222222222 3567888875555555555544 223457999999999999999988 333233344444433322
Q ss_pred cchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 166 SSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 166 ~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+ .|... ..+.||++.++++++
T Consensus 164 ---~---~~~~~-~~~~Id~~~~~~e~~ 184 (200)
T 4eun_A 164 ---A---LEPDE-SGIVLDLRQPPEQLI 184 (200)
T ss_dssp ---C---CCTTS-CEEEEETTSCHHHHH
T ss_pred ---C---CCCCC-CeEEEECCCCHHHHH
Confidence 1 12222 477899988887654
No 42
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.69 E-value=9.6e-16 Score=109.60 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=86.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCC-----CC--------------
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----VP-------------- 81 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------------- 81 (196)
+.+|+|.|++||||||+++.|++ +|..+++.|++.+.....+......+...+..... ..
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 35799999999999999999987 89999999998876432222111111111111000 00
Q ss_pred ----H----HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252 82 ----S----EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (196)
Q Consensus 82 ----~----~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~ 153 (196)
. ......+...+....+..+|+|+... .+. . +. ..++.+|||++|++++.+|+..| ...+.
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l-~e~-~-~~----~~~d~vi~l~~~~e~~~~Rl~~R----~~~~~ 149 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLL-IEN-K-LT----ALCDRILVVDVSPQTQLARSAQR----DNNNF 149 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTT-TTT-T-CG----GGCSEEEEEECCHHHHHHHHC---------CH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCEEEEEechh-hhc-C-cH----hhCCEEEEEECCHHHHHHHHHHc----CCCCH
Confidence 0 01111122223222355788887322 111 1 11 13678999999999999999988 23356
Q ss_pred HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCce
Q 029252 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIF 190 (196)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e 190 (196)
+.+.+++... .+..+.|.. .. ++||++.+++
T Consensus 150 e~~~~r~~~q----~~~~~~~~~-ad-~vIdn~~~~~ 180 (206)
T 1jjv_A 150 EQIQRIMNSQ----VSQQERLKW-AD-DVINNDAELA 180 (206)
T ss_dssp HHHHHHHHHS----CCHHHHHHH-CS-EEEECCSCHH
T ss_pred HHHHHHHHhc----CChHHHHHh-CC-EEEECCCCcc
Confidence 6677766542 233444443 33 5788877777
No 43
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.69 E-value=1.5e-16 Score=111.87 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=85.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (196)
+++|+|.|+|||||||+++.|++++++.+++.|++.+... +......+. ..+...........+...+. ....
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~~~~~~~---~~g~~~~~~~~~~~~~~~~~--~~~~ 74 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRSIADIFA---TDGEQEFRRIEEDVVRAALA--DHDG 74 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSCHHHHHH---HHCHHHHHHHHHHHHHHHHH--HCCS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCCHHHHHH---HhChHHHHHHHHHHHHHHHh--cCCe
Confidence 4579999999999999999999999999999999887763 221111111 11211112222233333332 1333
Q ss_pred EEEeccC--CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcC
Q 029252 101 FLIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178 (196)
Q Consensus 101 ~iidg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (196)
++..|.. ........+ . .+.+|||++|++++.+|+.+|. +++........+++..+.... .+.|....
T Consensus 75 vi~~g~~~v~~~~~~~~l---~---~~~vV~L~~~~e~~~~Rl~~r~-~r~~~~~~~~~~~i~~~~~~r---~~~~~~~~ 144 (184)
T 2iyv_A 75 VLSLGGGAVTSPGVRAAL---A---GHTVVYLEISAAEGVRRTGGNT-VRPLLAGPDRAEKYRALMAKR---APLYRRVA 144 (184)
T ss_dssp EEECCTTGGGSHHHHHHH---T---TSCEEEEECCHHHHHHHTTCCC-CCSSTTSCCHHHHHHHHHHHH---HHHHHHHC
T ss_pred EEecCCcEEcCHHHHHHH---c---CCeEEEEeCCHHHHHHHHhCCC-CCCCccCCCHHHHHHHHHHHH---HHHHhccC
Confidence 4444422 222222221 1 4579999999999999998871 122111111122233332211 22343333
Q ss_pred cEEEEeCC-CCceeEE
Q 029252 179 KVRKVIFC-SPIFILV 193 (196)
Q Consensus 179 ~~~~id~~-~~~e~v~ 193 (196)
.++||++ .++++++
T Consensus 145 -~~~Idt~~~s~ee~~ 159 (184)
T 2iyv_A 145 -TMRVDTNRRNPGAVV 159 (184)
T ss_dssp -SEEEECSSSCHHHHH
T ss_pred -CEEEECCCCCHHHHH
Confidence 3578887 6777653
No 44
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.68 E-value=2.4e-15 Score=106.76 Aligned_cols=155 Identities=17% Similarity=0.232 Sum_probs=88.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHH----------HHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV----------TIKL 88 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 88 (196)
++|++.|+.||||||+++.|++.| |..++.... +.+++.++.+..++......+... ....
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999988 444432211 223344444444444333322211 1223
Q ss_pred HHHHHHhcCCCeEEEeccCC------------CHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHH
Q 029252 89 LQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (196)
Q Consensus 89 ~~~~l~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~ 154 (196)
+...+. .+..||.|.|.. ..+....+... ....||+++||++|++++.+|...| .|.. ..+
T Consensus 75 I~~~L~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~--dr~e-~~e 149 (197)
T 3hjn_A 75 IKQYLS--EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFE-KRE 149 (197)
T ss_dssp HHHHHT--TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----CTTC-CHH
T ss_pred HHHHHH--CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc--Cccc-cHH
Confidence 333333 478889996431 12222222221 5678999999999999999997766 4432 233
Q ss_pred HHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
..++....+ ..+.+.+ ...+++||+++++++|.
T Consensus 150 -f~~rv~~~y---~~la~~~--~~~~~~IDa~~~~eeV~ 182 (197)
T 3hjn_A 150 -FLERVREGY---LVLAREH--PERIVVLDGKRSIEEIH 182 (197)
T ss_dssp -HHHHHHHHH---HHHHHHC--TTTEEEEETTSCHHHHH
T ss_pred -HHHHHHHHH---HHHHHhC--CCCEEEEcCCCCHHHHH
Confidence 333332222 1232222 23699999999998764
No 45
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.68 E-value=5.2e-16 Score=107.43 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=85.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGNDK 100 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (196)
+.|+|+|+|||||||+++.|++++++.+++.|++.+... +... ...+. .+......+....+. .+. ....
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~--g~~~----~~~~~~~~~~~~~~~~~~~l~-~l~--~~~~ 71 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE--GLSI----PQIFEKKGEAYFRKLEFEVLK-DLS--EKEN 71 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCH----HHHHHHSCHHHHHHHHHHHHH-HHT--TSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc--CCCH----HHHHHHhChHHHHHHHHHHHH-HHh--ccCC
Confidence 469999999999999999999999999999999887653 2222 22221 111000111122222 222 1344
Q ss_pred EEEe-c--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCC--CcHHHHHHHHHHHHhcchhHHHHHH
Q 029252 101 FLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED--DNVETIRKRFKVFLESSLPVVQYYE 175 (196)
Q Consensus 101 ~iid-g--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (196)
+|++ | ..........+.. ++.+|||++|++++.+|+..|. .|+. +..+.+..++... .+.|.
T Consensus 72 ~Vi~~g~~~~~~~~~~~~l~~-----~~~~i~l~~~~e~~~~R~~~r~-~r~~~~~~~~~i~~~~~~~-------~~~~~ 138 (168)
T 2pt5_A 72 VVISTGGGLGANEEALNFMKS-----RGTTVFIDIPFEVFLERCKDSK-ERPLLKRPLDEIKNLFEER-------RKIYS 138 (168)
T ss_dssp EEEECCHHHHTCHHHHHHHHT-----TSEEEEEECCHHHHHHHCBCTT-CCBGGGSCGGGTHHHHHHH-------HHHHT
T ss_pred eEEECCCCEeCCHHHHHHHHc-----CCEEEEEECCHHHHHHHHhCCC-CCCCCcchHHHHHHHHHHH-------HHHHH
Confidence 5554 3 2233333333332 6799999999999999998761 2222 1123333333211 22344
Q ss_pred hcCcEEEEeCCCCceeEE
Q 029252 176 AKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 176 ~~~~~~~id~~~~~e~v~ 193 (196)
. ..+++ +++.++++++
T Consensus 139 ~-~~~~i-~~~~~~~~~~ 154 (168)
T 2pt5_A 139 K-ADIKV-KGEKPPEEVV 154 (168)
T ss_dssp T-SSEEE-ECSSCHHHHH
T ss_pred h-CCEEE-CCCCCHHHHH
Confidence 3 55666 7777877653
No 46
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.68 E-value=1.7e-15 Score=109.07 Aligned_cols=164 Identities=13% Similarity=0.143 Sum_probs=81.2
Q ss_pred hcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCC----cEec-HHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHH---
Q 029252 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLS-AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV--- 84 (196)
Q Consensus 13 ~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~----~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 84 (196)
+..+...++.+|++.|++||||||+++.|++.++. .++. . +. +.+++.++.+..++..........
T Consensus 13 ~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~t----re--P~~t~~g~~ir~~l~~~~~~~~~~e~l 86 (223)
T 3ld9_A 13 EAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLT----RE--PGGTLLNESVRNLLFKAQGLDSLSELL 86 (223)
T ss_dssp ------CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEE----ES--SCSSHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEee----eC--CCCChHHHHHHHHHhCCCCCCHHHHHH
Confidence 33455567899999999999999999999998754 2221 1 00 223445555555554321122111
Q ss_pred H---------HHHHHHHHHhcCCCeEEEeccCC------------CHHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHh
Q 029252 85 T---------IKLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRIL 142 (196)
Q Consensus 85 ~---------~~~~~~~l~~~~~~~~iidg~~~------------~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~ 142 (196)
+ ...+...+. .+..||.|.|.. ..+....+... ....||++|||++|++++.+|+
T Consensus 87 lf~a~R~~~~~~~I~paL~--~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri- 163 (223)
T 3ld9_A 87 FFIAMRREHFVKIIKPSLM--QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS- 163 (223)
T ss_dssp HHHHHHHHHHHHTHHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC---------
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-
Confidence 0 111233333 478889996431 12222233221 1168999999999999999999
Q ss_pred hccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 143 ~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
.| +|.+.......+++...+ ..+.+.| ...+++||++.+++++
T Consensus 164 ~r--dr~E~~~~e~~~rv~~~y---~~la~~~--~~~~~vIDa~~sieeV 206 (223)
T 3ld9_A 164 CK--NGYEFADMEFYYRVRDGF---YDIAKKN--PHRCHVITDKSETYDI 206 (223)
T ss_dssp ----------CHHHHHHHHHHH---HHHHHHC--TTTEEEEESSCSSSCC
T ss_pred cc--CccccchHHHHHHHHHHH---HHHHHHC--CCCEEEEcCCCCHHHH
Confidence 55 443221123333332222 2333333 2469999999999987
No 47
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.68 E-value=2e-17 Score=118.81 Aligned_cols=160 Identities=13% Similarity=0.090 Sum_probs=90.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHH-----------H
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK-----------L 88 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 88 (196)
++++|+|+|+|||||||+++.|+++++..+++.+ .++.. ..+.+.+..+..++..+..++...... .
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE 86 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999875544441 11111 012233333444443333333221111 1
Q ss_pred HHHHHHhcCCCeEEEeccCCCH---HH------HHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHH
Q 029252 89 LQKAMEESGNDKFLIDGFPRNE---EN------RAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR 157 (196)
Q Consensus 89 ~~~~l~~~~~~~~iidg~~~~~---~~------~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~ 157 (196)
+...+. .+..+|+|+++... .. ...+..+ ....++.+|||++|++++.+|+..| ..+.+ . +.+.
T Consensus 87 i~~~l~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r-~~r~~-~-~~~~ 161 (212)
T 2wwf_A 87 IKSLLL--KGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG-EEIYE-K-VETQ 161 (212)
T ss_dssp HHHHHH--HTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT-SSTTC-S-HHHH
T ss_pred HHHHHh--CCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC-ccccc-H-HHHH
Confidence 222222 36789999876321 11 1122111 2246899999999999999998755 12222 2 3455
Q ss_pred HHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 158 KRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+++...+..... ....++||++.++++++
T Consensus 162 ~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~ 190 (212)
T 2wwf_A 162 KKIYETYKHFAH-------EDYWINIDATRKIEDIH 190 (212)
T ss_dssp HHHHHHGGGGTT-------CTTEEEEECSSCHHHHH
T ss_pred HHHHHHHHHHhc-------cCCEEEEECCCCHHHHH
Confidence 555333221111 34588999998887654
No 48
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.68 E-value=4.1e-15 Score=103.60 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=88.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----HHcCCcchH-HHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKAM 93 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 93 (196)
..+.+|+|.|+|||||||+++.|+..++..+++.|++.... ...+..... .....+ ......+...+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~ 77 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL--------QALNDAAFAMQ 77 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHH--------HHHHHHHHHHH
Confidence 34578999999999999999999999999999987764210 011111110 000000 01112222222
Q ss_pred HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCc-EEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHH
Q 029252 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ 172 (196)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~-~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 172 (196)
. .+..+|+|...........+.+ . .++ .+|||++|++++.+|+..| ++.......+..++..+. +.
T Consensus 78 ~--~~~~~vi~~~~~~~~~~~~l~~-~--~~~~~vv~l~~~~e~~~~R~~~R--~~~~~~~~~~~~~~~~~~----~~-- 144 (175)
T 1knq_A 78 R--TNKVSLIVCSALKKHYRDLLRE-G--NPNLSFIYLKGDFDVIESRLKAR--KGHFFKTQMLVTQFETLQ----EP-- 144 (175)
T ss_dssp H--HCSEEEEECCCCSHHHHHHHHT-T--CTTEEEEEEECCHHHHHHHHHTS--TTCCCCHHHHHHHHHHCC----CC--
T ss_pred h--cCCcEEEEeCchHHHHHHHHHh-c--CCCEEEEEEECCHHHHHHHHHhc--cCCCCchHHHHHHHHhhh----Cc--
Confidence 2 2567888854334444444443 2 234 6999999999999999988 322223344444332221 11
Q ss_pred HHHhcCcEEEEeCCCCceeEE
Q 029252 173 YYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 173 ~~~~~~~~~~id~~~~~e~v~ 193 (196)
.|.. ...+.||++.++++++
T Consensus 145 ~~~~-~~~~~Id~~~~~~~~~ 164 (175)
T 1knq_A 145 GADE-TDVLVVDIDQPLEGVV 164 (175)
T ss_dssp CTTC-TTEEEEECSSCHHHHH
T ss_pred ccCC-CCeEEEeCCCCHHHHH
Confidence 1222 2467899888877653
No 49
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.67 E-value=5.3e-16 Score=111.24 Aligned_cols=120 Identities=15% Similarity=0.199 Sum_probs=66.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCc--Eec----HHHHHHHHHHcCC---cchHHHHHHHHcCCCCCHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLS----AGDLLRAEIKSGS---ENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~--~~~----~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (196)
++++|+|.|+|||||||+++.|+++++.. ++. .++.++..+..+. .........+..... .......+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~i~ 80 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDF--SDRYERYIL 80 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHH--HHHHHHTHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHH--HHHHHHHHH
Confidence 36799999999999999999999999763 332 1223333222110 011000000000000 000011122
Q ss_pred HHHHhcCCCeEEEeccCCCH-----------HHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHh-hc
Q 029252 91 KAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL-NR 144 (196)
Q Consensus 91 ~~l~~~~~~~~iidg~~~~~-----------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~-~R 144 (196)
..+. .+..+|+|+++... +....+.. ....++++|||++|++++.+|+. .|
T Consensus 81 ~~l~--~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~~R 143 (213)
T 2plr_A 81 PMLK--SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYS-FAIKPDITFYIRVSPDIALERIKKSK 143 (213)
T ss_dssp HHHH--TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTT-TSCCCSEEEEEECCHHHHHHHHHHTT
T ss_pred HHHh--CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 2232 46789999876432 11222222 33458899999999999999998 77
No 50
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.67 E-value=6.1e-16 Score=114.55 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=91.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH---hCCcEe--cHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH---FGYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~---~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (196)
+++|+|+|+|||||||+++.|++. .|+.++ +.|.+. .........+. .. ........+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~-~~l~~~~~~~e---~~-------~~~~~~~~i~~~l~- 71 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR-ESFPVWKEKYE---EF-------IKKSTYRLIDSALK- 71 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH-TTSSSCCGGGH---HH-------HHHHHHHHHHHHHT-
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH-HHHhhhhHHHH---HH-------HHHHHHHHHHHHhh-
Confidence 578999999999999999999998 577666 765543 22111011010 00 01112334444443
Q ss_pred cCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHH
Q 029252 96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY 173 (196)
Q Consensus 96 ~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (196)
...+|+|+.+........+... ....++.+|||++|++++.+|+..| ++. .+.+.+......|.. +. ..
T Consensus 72 --~~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R--~~~-~~~~~l~~~~~~~e~---~~-~~ 142 (260)
T 3a4m_A 72 --NYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER--GEK-IPNEVIKKMYEKFDE---PG-KK 142 (260)
T ss_dssp --TSEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT--TCS-SCHHHHHHHHHHCCC---TT-SS
T ss_pred --CCEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC--CCC-CCHHHHHHHHHHhcC---cc-cc
Confidence 3789999977666655555442 3455688999999999999999988 433 234455544333321 11 12
Q ss_pred HHhcCcEEEEeCCC--CceeE
Q 029252 174 YEAKGKVRKVIFCS--PIFIL 192 (196)
Q Consensus 174 ~~~~~~~~~id~~~--~~e~v 192 (196)
|.-....+.||++. +.+++
T Consensus 143 ~~~~~~~~~Id~~~~~~~~ei 163 (260)
T 3a4m_A 143 YKWDEPFLIIDTTKDIDFNEI 163 (260)
T ss_dssp CGGGCCSEEEETTSCCCHHHH
T ss_pred CCCCCCEEEEeCCCCCCHHHH
Confidence 22123467889886 45443
No 51
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.66 E-value=1.1e-15 Score=109.04 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=86.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH-----------HH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------IK 87 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 87 (196)
++++|+|+|+|||||||+++.|++++ ++.+++.+...+ ....++.+..++..+........ ..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~-----~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 77 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQR-----STVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFAS 77 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCT-----TSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCC-----CCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998 466665321100 12233344444433322222111 01
Q ss_pred HHHHHHHhcCCCeEEEeccCCCH-----------HHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHH
Q 029252 88 LLQKAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI 156 (196)
Q Consensus 88 ~~~~~l~~~~~~~~iidg~~~~~-----------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~ 156 (196)
.+...+. .+..+|+|+++... +....+.. ....|+.+|||++|++++.+ +| +........+
T Consensus 78 ~i~~~l~--~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~-~~~~~d~vi~l~~~~e~~~~---~R--~~d~~e~~~~ 149 (204)
T 2v54_A 78 FIQEQLE--QGITLIVDRYAFSGVAYAAAKGASMTLSKSYES-GLPKPDLVIFLESGSKEINR---NV--GEEIYEDVTF 149 (204)
T ss_dssp HHHHHHH--TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHT-TSBCCSEEEEECCCHHHHTT---CC--SSSTTCCSHH
T ss_pred HHHHHHH--CCCEEEEECchhhHHHHHHccCCCHHHHHHHhc-CCCCCCEEEEEeCCHHHHHh---hc--CcccccHHHH
Confidence 1222333 46789999876421 22222222 33568999999999999987 45 2111111244
Q ss_pred HHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 157 RKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.+++...+. ...+. ....+++||++.++++++
T Consensus 150 ~~rl~~~y~---~~~~~--~~~~~~~Id~~~~~~~v~ 181 (204)
T 2v54_A 150 QQKVLQEYK---KMIEE--GDIHWQIISSEFEEDVKK 181 (204)
T ss_dssp HHHHHHHHH---HHHTT--CSSCEEEECTTSCHHHHH
T ss_pred HHHHHHHHH---HHHHh--CCCcEEEEECCCCHHHHH
Confidence 455543221 11111 123688999998888764
No 52
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.65 E-value=5e-15 Score=110.76 Aligned_cols=157 Identities=16% Similarity=0.145 Sum_probs=92.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHH---------
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE--------- 83 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--------- 83 (196)
++.+.+|+|+|+|||||||+|+.|+ .+|+.+++.|++.+.....+......+...+... ..+...
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 3456899999999999999999999 6899999999998776544332222221111100 000000
Q ss_pred ---------H----HHHHHHHHHH---hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCC
Q 029252 84 ---------V----TIKLLQKAME---ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQG 147 (196)
Q Consensus 84 ---------~----~~~~~~~~l~---~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~ 147 (196)
+ +...+...+. ......+|+||....... +. ..++.+|||++|++++.+|+.+|.
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~----~~~d~vI~l~a~~ev~~~Rl~~R~-- 221 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG---WQ----SMVHEVWTVVIPETEAVRRIVERD-- 221 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT---GG----GGCSEEEEEECCHHHHHHHHHHHH--
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc---hH----HhCCEEEEEcCCHHHHHHHHHHcC--
Confidence 0 0111111111 112467999986432111 11 236899999999999999999882
Q ss_pred CCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 148 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
..+.+.+..++... .+...++ .... ++||++.+++++
T Consensus 222 --g~s~e~~~~ri~~q----~~~~~~~-~~AD-~vIdn~~s~eel 258 (281)
T 2f6r_A 222 --GLSEAAAQSRLQSQ----MSGQQLV-EQSN-VVLSTLWESHVT 258 (281)
T ss_dssp --CCCHHHHHHHHHTS----CCHHHHH-HTCS-EEEECSSCHHHH
T ss_pred --CCCHHHHHHHHHHc----CChHhhH-hhCC-EEEECCCCHHHH
Confidence 22455566655443 1222332 2334 467888777654
No 53
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.65 E-value=5.6e-16 Score=111.35 Aligned_cols=162 Identities=15% Similarity=0.196 Sum_probs=81.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHH-----------H
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI-----------K 87 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 87 (196)
.++++|+|+|+|||||||+++.|+++++...++.+. ++.. ..+...+..+..++..+...+..... .
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 84 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP 84 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999987533332211 0000 00112223333333322222221111 1
Q ss_pred HHHHHHHhcCCCeEEEeccC------------CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHH
Q 029252 88 LLQKAMEESGNDKFLIDGFP------------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 155 (196)
Q Consensus 88 ~~~~~l~~~~~~~~iidg~~------------~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~ 155 (196)
.+...+. .+..+|+|.+. ...+....+.. ....++.+|||++|++++.+|+..| ..+. +. ..
T Consensus 85 ~i~~~l~--~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~Rl~r~-~~~~-~~-~~ 158 (215)
T 1nn5_A 85 LIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV-GLPKPDLVLFLQLQLADAAKRGAFG-HERY-EN-GA 158 (215)
T ss_dssp HHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGT-TSBCCSEEEEEECCHHHHHHC------CTT-CS-HH
T ss_pred HHHHHHH--CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccC-cccc-ch-HH
Confidence 2333333 36788899532 11222221222 2346899999999999999998643 1222 22 23
Q ss_pred HHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 156 IRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+.+++...+. ..... ....+++||++.++++++
T Consensus 159 ~~~~~~~~~~---~~~~~--~~~~~~~Id~~~~~e~~~ 191 (215)
T 1nn5_A 159 FQERALRCFH---QLMKD--TTLNWKMVDASKSIEAVH 191 (215)
T ss_dssp HHHHHHHHHH---HHTTC--TTSCEEEEETTSCHHHHH
T ss_pred HHHHHHHHHH---HHHHh--CCCCEEEEECCCCHHHHH
Confidence 3333322111 11000 123578999988887654
No 54
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.64 E-value=8.5e-16 Score=106.42 Aligned_cols=147 Identities=13% Similarity=0.142 Sum_probs=81.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGNDK 100 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (196)
..|+|+|+|||||||+++.|++++++.+++.|++.+... +... ...+. .+...........+..... ....
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~--g~~~----~~~~~~~g~~~~~~~~~~~l~~~~~--~~~~ 79 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV--GLSV----REIFEELGEDNFRMFEKNLIDELKT--LKTP 79 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCH----HHHHHHTCHHHHHHHHHHHHHHHHT--CSSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh--CCCH----HHHHHHhCHHHHHHHHHHHHHHHHh--cCCC
Confidence 579999999999999999999999999999999887753 2222 22221 1211111222233333222 2333
Q ss_pred -EEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHHhcchhHHHHHH
Q 029252 101 -FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QGREDDN-VETIRKRFKVFLESSLPVVQYYE 175 (196)
Q Consensus 101 -~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 175 (196)
+|..| ++.. .. + ..++.+|||++|++++.+|+..|. .+|+... .+.+...+... .+.|.
T Consensus 80 ~Vi~~g~g~~~~-~~---l-----~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r-------~~~~~ 143 (168)
T 1zuh_A 80 HVISTGGGIVMH-EN---L-----KGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKR-------QALYE 143 (168)
T ss_dssp CEEECCGGGGGC-GG---G-----TTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHH-------HHHHH
T ss_pred EEEECCCCEech-hH---H-----hcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH-------HHHHH
Confidence 33323 2222 11 1 236789999999999999998761 1233222 33333333221 12343
Q ss_pred hcCcEEEEeCCCCceeEE
Q 029252 176 AKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 176 ~~~~~~~id~~~~~e~v~ 193 (196)
... .++||++.++++++
T Consensus 144 ~~a-~~~Id~~~~~e~~~ 160 (168)
T 1zuh_A 144 KNA-SFIIDARGGLNNSL 160 (168)
T ss_dssp HTC-SEEEEGGGCHHHHH
T ss_pred HHC-CEEEECCCCHHHHH
Confidence 323 34678777777653
No 55
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.64 E-value=7e-15 Score=106.01 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=89.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHHH----------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEV---------- 84 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---------- 84 (196)
++.+|+|+|++||||||+++.|++ +|..+++.|++.+.....+......+...+... ..+....
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 457999999999999999999988 999999999988775433322222222222110 0111111
Q ss_pred --------HHHHHH----HHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc
Q 029252 85 --------TIKLLQ----KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (196)
Q Consensus 85 --------~~~~~~----~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~ 152 (196)
....+. ..+....+..+|+++ +...+.. +.. .++.+|||++|++++.+|+..| + ..+
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~--~~~----~~d~vi~l~~~~e~~~~Rl~~R--~--~~~ 150 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENS--LYK----KANRVLVVDVSPETQLKRTMQR--D--DVT 150 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT--GGG----GCSEEEEEECCHHHHHHHHHHH--H--TCC
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-eeeeccC--ccc----cCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence 111111 112211234455554 3322221 211 3789999999999999999988 2 234
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.+.+.+++.... +...++. ... ++||++.++++++
T Consensus 151 ~~~~~~~~~~~~----~~~~~~~-~ad-~vId~~~~~~~~~ 185 (218)
T 1vht_A 151 REHVEQILAAQA----TREARLA-VAD-DVIDNNGAPDAIA 185 (218)
T ss_dssp HHHHHHHHHHSC----CHHHHHH-HCS-EEEECSSCTTSHH
T ss_pred HHHHHHHHHhcC----ChHHHHH-hCC-EEEECCCCHHHHH
Confidence 555666554421 2222222 233 5788887777653
No 56
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.64 E-value=8.2e-15 Score=104.30 Aligned_cols=154 Identities=15% Similarity=0.125 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHH-------------
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE------------- 83 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------- 83 (196)
.-|.|+|.+||||||+++.|++ +|+++++.|.+.+..+..+.+.-..+...++.. ..+...
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 4699999999999999999987 999999999999888766655444444433221 112211
Q ss_pred -----HH----HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHH
Q 029252 84 -----VT----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (196)
Q Consensus 84 -----~~----~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~ 154 (196)
+. ...+...+.+.....+|+|. |...+... +.. .+|.+|++++|+++..+|+.+| ...+.+
T Consensus 89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~~-~~~----~~D~vi~V~ap~e~r~~Rl~~R----dg~s~e 158 (210)
T 4i1u_A 89 RRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESRN-WKA----RCDRVLVVDCPVDTQIARVMQR----NGFTRE 158 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCHH-HHH----HCSEEEEEECCHHHHHHHHHHH----HCCCHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccCC-ccc----cCCeEEEEECCHHHHHHHHHhc----CCCCHH
Confidence 11 22233333333345577775 44433111 121 3789999999999999999998 345677
Q ss_pred HHHHHHHHHHhcchhHHHHHHhcCcEEEEeCC-CCceeE
Q 029252 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKVIFC-SPIFIL 192 (196)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~e~v 192 (196)
.+..|+.... +..+++ ...+ ++|+++ .+++++
T Consensus 159 ea~~ri~~Q~----~~eek~-~~AD-~VIdN~~gsle~l 191 (210)
T 4i1u_A 159 QVEAIIARQA----TREARL-AAAD-DVIVNDAATPDAL 191 (210)
T ss_dssp HHHHHHHHSC----CHHHHH-HTCS-EEEECSSCCHHHH
T ss_pred HHHHHHHHcC----ChHHHH-HhCC-EEEECCCCCHHHH
Confidence 7777765432 333333 3334 467777 777653
No 57
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.62 E-value=1.9e-14 Score=102.85 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=90.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH----cCCcc--hHHHHHHHH-----------------cCC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSEN--GTMIQNMIK-----------------EGK 78 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~----~~~~~--~~~~~~~~~-----------------~~~ 78 (196)
++|.|.|++||||||+++.|++.+++.+++.|++.+.... .+... ...+..... .|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 82 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGE 82 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCe
Confidence 4899999999999999999999999999999998876532 12111 111222111 111
Q ss_pred CCCH-----------------HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH
Q 029252 79 IVPS-----------------EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (196)
Q Consensus 79 ~~~~-----------------~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~ 141 (196)
.++. ..+...+........ ..+|+||.... . . ....++++|||++|++++.+|+
T Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~-~------~-~~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 83 DLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMG-T------A-VFPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp ECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCC-C------C-CCTTCSEEEEEECCHHHHHHHH
T ss_pred eCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEcccee-E------E-EecCCcEEEEEECCHHHHHHHH
Confidence 1110 111222222222223 67889986432 0 0 2234789999999999999999
Q ss_pred hhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCC-CceeEE
Q 029252 142 LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCS-PIFILV 193 (196)
Q Consensus 142 ~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~e~v~ 193 (196)
..| .. .+.+.+.+++......... .+....+.++||++. ++++++
T Consensus 154 ~~r--~~--~~~~~~~~~~~~R~~~~~~---~~~~~ad~~~Id~~~~~~ee~~ 199 (208)
T 3ake_A 154 ARE--RP--QAYEEVLRDLLRRDERDKA---QSAPAPDALVLDTGGMTLDEVV 199 (208)
T ss_dssp HHT--SS--SCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHHHH
T ss_pred Hhh--cc--cCHHHHHHHHHHHHHHHhh---cccCCCCEEEEECCCCCHHHHH
Confidence 888 22 3345555555432211100 002223457899885 877654
No 58
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.62 E-value=1.6e-15 Score=105.81 Aligned_cols=148 Identities=16% Similarity=0.169 Sum_probs=85.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 102 (196)
.|+|.|+|||||||+++.|++++++.+++.|++.+.... ......+. ..+...........+.. +. ....+|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g--~~~~~~~~---~~g~~~~~~~~~~~~~~-l~--~~~~~v 77 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--QKVSEIFE---QKRENFFREQEQKMADF-FS--SCEKAC 77 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--SCHHHHHH---HHCHHHHHHHHHHHHHH-HT--TCCSEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC--CCHHHHHH---HcCHHHHHHHHHHHHHH-HH--ccCCEE
Confidence 699999999999999999999999999999998876521 11111111 11111111122222322 22 234455
Q ss_pred Ee-ccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHHhcchhHHHHHHhcCc
Q 029252 103 ID-GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QGREDDN-VETIRKRFKVFLESSLPVVQYYEAKGK 179 (196)
Q Consensus 103 id-g~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (196)
++ |.....+ .. +.. .+.+|||++|++++.+|+..|. ..|+... .+.+...+.. ..+.|....
T Consensus 78 i~~g~~~~~~-~~-l~~-----~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~-------r~~~y~~~~- 142 (175)
T 1via_A 78 IATGGGFVNV-SN-LEK-----AGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNE-------RLSKYEQKA- 142 (175)
T ss_dssp EECCTTGGGS-TT-GGG-----GCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHH-------HHHHHHHHC-
T ss_pred EECCCCEehh-hH-Hhc-----CCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHH-------HHHHHHhcC-
Confidence 65 5332211 11 222 3589999999999999998772 2344332 3333332221 223343322
Q ss_pred EEEEeCC-CCceeEE
Q 029252 180 VRKVIFC-SPIFILV 193 (196)
Q Consensus 180 ~~~id~~-~~~e~v~ 193 (196)
.+.||++ .++++++
T Consensus 143 ~~~Idt~~~~~eev~ 157 (175)
T 1via_A 143 NFILNIENKNIDELL 157 (175)
T ss_dssp SEEEECTTCCHHHHH
T ss_pred CEEEECCCCCHHHHH
Confidence 4688888 6877654
No 59
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.61 E-value=2.2e-15 Score=107.55 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=87.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCC-----CCCHH-------------
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-----IVPSE------------- 83 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~------------- 83 (196)
++|+|.|++||||||+++.|++ +++.+++.|++.+.....+......+........ .....
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 9999999999887643322211111111111000 01110
Q ss_pred -----HHH----HHHHHHHHhcCC-CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252 84 -----VTI----KLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (196)
Q Consensus 84 -----~~~----~~~~~~l~~~~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~ 153 (196)
+.. ..+...+....+ ..+|+|+....... + ...++.+|||++|++++.+|+..| +. +.
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~---~----~~~~~~~i~l~~~~e~~~~Rl~~R--~~---~~ 148 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKG---T----YKNYDKLIVVYAPYEVCKERAIKR--GM---SE 148 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTT---C----GGGSSEEEEECCCHHHHHHHHHHT--CC---CH
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCC---c----hhhCCEEEEEECCHHHHHHHHHHc--CC---CH
Confidence 001 111112221233 67889974322111 1 113678999999999999999988 42 34
Q ss_pred HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
+.+.+++.... +... |..... ++||++.++++++
T Consensus 149 ~~~~~~~~~~~----~~~~-~~~~ad-~vId~~~~~~~~~ 182 (204)
T 2if2_A 149 EDFERRWKKQM----PIEE-KVKYAD-YVIDNSGSIEETY 182 (204)
T ss_dssp HHHHHHHTTSC----CHHH-HGGGCS-EECCCSSCHHHHH
T ss_pred HHHHHHHHhCC----ChhH-HHhcCC-EEEECCCCHHHHH
Confidence 45555543322 2222 333334 4788887777653
No 60
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.60 E-value=6.3e-15 Score=104.97 Aligned_cols=157 Identities=14% Similarity=0.149 Sum_probs=81.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHH----HHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG----DLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
++|+|.|+|||||||+++.|+++++..++.-. .+++..+.. ......... .......+........
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~r~~~~~~~~~ 70 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKD----LKKTVFKMQ------IYMLTARSKQLKQAKN 70 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTC----HHHHHHHHH------HHHHHHHHHHHC----
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhC----ccccchhHH------HHHHHHHHHHHHHhhc
Confidence 46999999999999999999999997665310 111111000 000000000 0000111111111111
Q ss_pred CCeEEEeccCCCHH---------------HHHH----HHhh--c-------CCCCcEEEEEEcCHHHHHHHHhhccCCCC
Q 029252 98 NDKFLIDGFPRNEE---------------NRAA----FEAV--T-------KIEPEFVLFFDCSEEEMERRILNRNQGRE 149 (196)
Q Consensus 98 ~~~~iidg~~~~~~---------------~~~~----~~~~--~-------~~~~~~~i~l~~~~~~~~~R~~~R~~~r~ 149 (196)
...+|+|++....- .... +... . ...++.+|||++|++++.+|+.+| +++
T Consensus 71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R--~r~ 148 (205)
T 2jaq_A 71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKR--GRS 148 (205)
T ss_dssp --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHH--TCH
T ss_pred cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHc--CCh
Confidence 33489998764311 0010 1111 1 256889999999999999999988 543
Q ss_pred CCcH--HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 150 DDNV--ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 150 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.... ....+++...+ ....+.|......++||++.++++++
T Consensus 149 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~Id~~~~~~~v~ 191 (205)
T 2jaq_A 149 EELLIGEEYWETLNKNY---EEFYKQNVYDFPFFVVDAELDVKTQI 191 (205)
T ss_dssp HHHHSCHHHHHHHHHHH---HHHHHHHTTTSCEEEEETTSCHHHHH
T ss_pred hhhcCcHHHHHHHHHHH---HHHHHHccccCcEEEEECCCCHHHHH
Confidence 2211 12333333333 23445554234588999998877654
No 61
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.60 E-value=1.1e-14 Score=104.37 Aligned_cols=161 Identities=11% Similarity=0.168 Sum_probs=94.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCC-CCCH-HHH----------HH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-IVPS-EVT----------IK 87 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~----------~~ 87 (196)
++.+|++.|++||||||+++.|++.++..... ++.. ..+++.++.+..++.... .... ... ..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~ep-~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKFP-ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EESS-CTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEec-CCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999852211 1111 124556666777665433 1221 111 12
Q ss_pred HHHHHHHhcCCCeEEEeccCCC-H----------HHHHHHHhh--cCCCCcEEEEE-EcCHHHHHHHHhhccCCCCCCcH
Q 029252 88 LLQKAMEESGNDKFLIDGFPRN-E----------ENRAAFEAV--TKIEPEFVLFF-DCSEEEMERRILNRNQGREDDNV 153 (196)
Q Consensus 88 ~~~~~l~~~~~~~~iidg~~~~-~----------~~~~~~~~~--~~~~~~~~i~l-~~~~~~~~~R~~~R~~~r~~~~~ 153 (196)
.+..++. .+..||.|.|..+ . .....+..+ ....||++||| ++|++++.+|+..| +...+.
T Consensus 79 ~I~paL~--~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~--~dr~E~- 153 (216)
T 3tmk_A 79 KIKKDLL--EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG--DERYET- 153 (216)
T ss_dssp HHHHHHH--TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS--CCTTCC-
T ss_pred HHHHHHH--cCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC--cccccH-
Confidence 3333343 4788899964211 1 112222222 45679999999 99999999997644 222333
Q ss_pred HHHHHHHHHHHhcchhHHHHH--HhcCcEEEEe-CCCCceeEE
Q 029252 154 ETIRKRFKVFLESSLPVVQYY--EAKGKVRKVI-FCSPIFILV 193 (196)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~id-~~~~~e~v~ 193 (196)
....+++...+. .+.+.+ .....+++|| ++.++++|.
T Consensus 154 ~~f~~rvr~~Y~---~la~~~~~~~~~~~~vID~a~~s~eeV~ 193 (216)
T 3tmk_A 154 VKFQEKVKQTFM---KLLDKEIRKGDESITIVDVTNKGIQEVE 193 (216)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHTTCCSEEEEECTTCCHHHHH
T ss_pred HHHHHHHHHHHH---HHHHhccccCCCCEEEEeCCCCCHHHHH
Confidence 344444433322 222221 1235799999 899998764
No 62
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.59 E-value=2.8e-14 Score=103.37 Aligned_cols=40 Identities=30% Similarity=0.577 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~ 60 (196)
+.+|+|.|+|||||||+++.|++.+++.+++.|++++...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~ 44 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA 44 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhh
Confidence 4689999999999999999999999999999999998653
No 63
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.58 E-value=3.5e-14 Score=111.69 Aligned_cols=120 Identities=21% Similarity=0.210 Sum_probs=83.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
.+.+.+|+|+|+|||||||+++.|++.+++.+++.|++- . .......+...+. .
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~--~ 308 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALR--Q 308 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHH--T
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHh--c
Confidence 346789999999999999999999999999999987741 0 1112334444444 4
Q ss_pred CCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc-c--CCCCCCcHHHHHHHHHHH
Q 029252 98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-N--QGREDDNVETIRKRFKVF 163 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R-~--~~r~~~~~~~~~~~~~~~ 163 (196)
+..+|+|+.......+..+.++ .......+|||++|.+++.+|+..| . ......+.+.+......+
T Consensus 309 g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 379 (416)
T 3zvl_A 309 GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQF 379 (416)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHC
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhc
Confidence 7789999988777666655443 2233446999999999999999999 2 222344555555544443
No 64
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.58 E-value=9.4e-15 Score=102.25 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=70.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
++.+|+|.|+|||||||+++.|+++++..+++.|++++.. ......+... .............+...+.. .
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---g 80 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE-QLYDGYDEEY-----DCPILDEDRVVDELDNQMRE---G 80 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH-TCEEEEETTT-----TEEEECHHHHHHHHHHHHHH---C
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc-chhhhhhhhh-----cCccCChHHHHHHHHHHHhc---C
Confidence 4568999999999999999999999999999999988775 1111111000 00112233334445555542 3
Q ss_pred eEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
++|++...... + ....++.+|||++|++++.+|+.+|
T Consensus 81 ~~vv~~~~~~~-----~---~~~~~~~vi~L~~~~e~l~~R~~~r 117 (180)
T 3iij_A 81 GVIVDYHGCDF-----F---PERWFHIVFVLRTDTNVLYERLETR 117 (180)
T ss_dssp CEEEECSCCTT-----S---CGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred CEEEEechhhh-----c---chhcCCEEEEEECCHHHHHHHHHHc
Confidence 56677533211 0 0112678999999999999999988
No 65
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.57 E-value=4e-14 Score=99.44 Aligned_cols=113 Identities=20% Similarity=0.349 Sum_probs=72.8
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHH-hCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCC---CHHHHHHHHHH
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH-FGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV---PSEVTIKLLQK 91 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 91 (196)
+..++++.|+|+|+|||||||+++.|+++ +++.+++.|++.+.. .....++..+ .. ... ..+.....+..
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~~----~~-~~~~r~~~~~~~~~l~~ 78 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTEL----DT-HIIEEKDEDRLLDFMEP 78 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------C-CCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHHh----hh-cccCCCCHHHHHHHHHH
Confidence 34455678999999999999999999999 799999999998874 1111221111 10 112 22233444444
Q ss_pred HHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 92 ~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.+. ...++++|..... .+.. ..++.+|||++|++++.+|+.+|
T Consensus 79 ~~~--~~g~~vi~~~~~~-----~~~~---~~~~~vi~l~~~~e~~~~Rl~~R 121 (184)
T 1y63_A 79 IMV--SRGNHVVDYHSSE-----LFPE---RWFHMVVVLHTSTEVLFERLTKR 121 (184)
T ss_dssp HHT--SSSEEEEECSCCT-----TSCG---GGCSEEEEEECCHHHHHHHHHHT
T ss_pred HHh--ccCCEEEeCchHh-----hhhh---ccCCEEEEEECCHHHHHHHHHhC
Confidence 442 2456788864321 1111 12578999999999999999988
No 66
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.56 E-value=1.7e-13 Score=102.70 Aligned_cols=123 Identities=14% Similarity=0.173 Sum_probs=73.3
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCCcchHHHHHHHHcC----CCCCHHHHHHHH
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----KIVPSEVTIKLL 89 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 89 (196)
....++.+|+|.|+|||||||+++.|++++ +..+++.|++ +..... +........... ......+....+
T Consensus 28 ~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~-R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v 103 (287)
T 1gvn_B 28 KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAII 103 (287)
T ss_dssp CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH-HTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh-HHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHH
Confidence 344567899999999999999999999998 6788887554 322111 100011100000 000011223344
Q ss_pred HHHHHhcCCCeEEEeccCCCHHHHHHHHhh-cC-CCCcEEEEEEcCHHHH----HHHHhhc
Q 029252 90 QKAMEESGNDKFLIDGFPRNEENRAAFEAV-TK-IEPEFVLFFDCSEEEM----ERRILNR 144 (196)
Q Consensus 90 ~~~l~~~~~~~~iidg~~~~~~~~~~~~~~-~~-~~~~~~i~l~~~~~~~----~~R~~~R 144 (196)
...+. .+..+|+|+.+....+...+.+. .. .....++++.+|++++ .+|+..|
T Consensus 104 ~~~l~--~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 104 SRLSD--QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp HHHHH--HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred HHHHh--cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 44444 37789999987776544333221 12 2223478999999999 8888777
No 67
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.56 E-value=2.6e-13 Score=95.01 Aligned_cols=149 Identities=12% Similarity=0.102 Sum_probs=78.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe-cHH---HHHHHHHHcCCcchHHHHHHHHcCCCCCH-HHHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL-SAG---DLLRAEIKSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAME 94 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~-~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 94 (196)
++++|+|+|+|||||||+++.|+++++..++ +.+ +.++..+..+... +. ..... ......+...+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~~g~~~-------~~--~~~~~~~~~~~~i~~~l~ 74 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGD-------PQ--EHPMWIPLMLDALQYASR 74 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTSTTCCSC-------GG--GSTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCccccch-------hh--hhHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999998877 431 1222211100000 00 00011 223344444443
Q ss_pred hcCCCeEEEeccCCCHHHHHH----HHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhH
Q 029252 95 ESGNDKFLIDGFPRNEENRAA----FEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV 170 (196)
Q Consensus 95 ~~~~~~~iidg~~~~~~~~~~----~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 170 (196)
. .+..+|+|+.......... +.. .+. ....|||++|++++.+|+..|. .++ ...+.+...+.. ..++
T Consensus 75 ~-~g~~vi~d~~~~~~~~~~~~~~~l~~-~~~-~~~~i~l~~~~e~~~~R~~~R~-~r~-~~~~~~~~~~~~----~~~~ 145 (183)
T 2vli_A 75 E-AAGPLIVPVSISDTARHRRLMSGLKD-RGL-SVHHFTLIAPLNVVLERLRRDG-QPQ-VNVGTVEDRLNE----LRGE 145 (183)
T ss_dssp H-CSSCEEEEECCCCHHHHHHHHHHHHH-TTC-CCEEEEEECCHHHHHHHHHTC------CCHHHHHHHHHH----HTSG
T ss_pred h-CCCcEEEeeeccCHHHHHHHHHHHHh-cCC-ceEEEEEeCCHHHHHHHHHhcc-ccc-hhHHHHHHHHHh----hccc
Confidence 2 3667888976555433222 222 222 2357999999999999999881 122 223333332222 2222
Q ss_pred HHHHHhcCcEEEEeCC-CCceeEE
Q 029252 171 VQYYEAKGKVRKVIFC-SPIFILV 193 (196)
Q Consensus 171 ~~~~~~~~~~~~id~~-~~~e~v~ 193 (196)
. | . . +||++ .++++++
T Consensus 146 -~-~---~-~-~Id~~~~~~~~~~ 162 (183)
T 2vli_A 146 -Q-F---Q-T-HIDTAGLGTQQVA 162 (183)
T ss_dssp -G-G---C-S-EEECTTCCHHHHH
T ss_pred -c-c---c-e-EeeCCCCCHHHHH
Confidence 1 2 2 3 88887 7777653
No 68
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.55 E-value=2.9e-14 Score=104.61 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=72.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (196)
+..|+|.|+|||||||+++.|++.+++.+++.|++++... .+......+. ..|...........+...... ....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~-~g~~i~~i~~---~~ge~~fr~~e~~~l~~l~~~-~~~~ 122 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM-KGTSVAEIFE---HFGESVFREKETEALKKLSLM-YHQV 122 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS-TTSCHHHHHH---HHCHHHHHHHHHHHHHHHHHH-CSSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh-cCccHHHHHH---HhCcHHHHHHHHHHHHHHHhh-cCCc
Confidence 5689999999999999999999999999999999887753 1222222221 112222222323334443331 1345
Q ss_pred EEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 101 ~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
+|.+| .+........+. .+.+|||++|++++.+|+..+
T Consensus 123 Via~GgG~v~~~~~~~~l~------~~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 123 VVSTGGGAVIRPINWKYMH------KGISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp EEECCGGGGGSHHHHHHHT------TSEEEEEECCHHHHHHHHHC-
T ss_pred EEecCCCeecCHHHHHHHh------CCcEEEEECCHHHHHHHHhhc
Confidence 55554 444444444332 268999999999999999863
No 69
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.55 E-value=3.9e-14 Score=100.79 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=86.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHc---CCCCCHHHH----------
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE---GKIVPSEVT---------- 85 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---------- 85 (196)
+++.+|+|.|++||||||+++.|++. |+.+++.|++.+... .+.. ..+...+.. ...+....+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~ 81 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPER 81 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHHH
Confidence 45688999999999999999999998 999999999887654 2111 111111100 001111111
Q ss_pred --------HHHH-HHHHH---hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252 86 --------IKLL-QKAME---ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (196)
Q Consensus 86 --------~~~~-~~~l~---~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~ 153 (196)
...+ ...+. ...+..+|+|+. ..... .+ ...++.+|||++|++++.+|+..| + ..+.
T Consensus 82 ~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~-~l~~~--~~----~~~~d~~i~l~~~~e~~~~R~~~R--~--~~~~ 150 (203)
T 1uf9_A 82 LKALEAVVHPEVRRLLMEELSRLEAPLVFLEIP-LLFEK--GW----EGRLHGTLLVAAPLEERVRRVMAR--S--GLSR 150 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECT-TTTTT--TC----GGGSSEEEEECCCHHHHHHHHHTT--T--CCTT
T ss_pred HHHHHHHhChHHHHHHHHHhhhcCCCEEEEEec-ceecc--Cc----hhhCCEEEEEECCHHHHHHHHHHc--C--CCCH
Confidence 1111 11111 122577888863 21111 01 123679999999999999999977 2 2233
Q ss_pred HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
+.+..++... . +....+. ..+ ++||++.+++++
T Consensus 151 ~~~~~~i~~~---~-~~~~~~~-~ad-~vId~~~~~~~~ 183 (203)
T 1uf9_A 151 EEVLARERAQ---M-PEEEKRK-RAT-WVLENTGSLEDL 183 (203)
T ss_dssp HHHHHHHTTS---C-CHHHHHH-HCS-EEECCSSHHHHH
T ss_pred HHHHHHHHHC---C-ChhHHHH-hCC-EEEECCCCHHHH
Confidence 4455554432 1 2222222 233 378887766654
No 70
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.54 E-value=6.2e-15 Score=105.46 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=91.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh--
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-- 95 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 95 (196)
.++.+|+|.|+|||||||+++.|++.+ ++.+++.|++++..... ......+... .....+........+...+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~l~~~i~~~l~~~~ 96 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI-ETDKNGFLQY-DVLEALNMEKMMSAISCWMESAR 96 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS-CBCTTSCBCC-SSGGGBCHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh-hccccCCChh-HHHHHhHHHHHHHHHHHHHhCCC
Confidence 346789999999999999999999988 78899998876532100 0000000000 000001112222222222221
Q ss_pred -----------cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc-HHHHH-HHHHH
Q 029252 96 -----------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN-VETIR-KRFKV 162 (196)
Q Consensus 96 -----------~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~-~~~~~-~~~~~ 162 (196)
.....+|+||...... .. ....++.++|+++|++++.+|+..| ++..+. .+.+. ..+..
T Consensus 97 ~~~~~~~~~~~~~~~~vi~eg~~~~~~-----~~-~~~~~d~~i~l~~~~~~~~~R~~~R--~~~~e~~~~~~~~~~~~~ 168 (207)
T 2qt1_A 97 HSVVSTDQESAEEIPILIIEGFLLFNY-----KP-LDTIWNRSYFLTIPYEECKRRRSTR--VYQPPDSPGYFDGHVWPM 168 (207)
T ss_dssp TSSCCC-----CCCCEEEEECTTCTTC-----GG-GTTTCSEEEEEECCHHHHHHHHHHS--CCSSCCCTTHHHHTHHHH
T ss_pred CCCcCCCeeecCCCCEEEEeehHHcCc-----HH-HHHhcCeeEEEECCHHHHHHHHHHc--CCCccchHHHHHHHHhHH
Confidence 1256789999653311 11 2335789999999999999999888 332221 12232 22222
Q ss_pred HHhcchhHHHHHHhc-CcEEEEeCCCCceeEE
Q 029252 163 FLESSLPVVQYYEAK-GKVRKVIFCSPIFILV 193 (196)
Q Consensus 163 ~~~~~~~~~~~~~~~-~~~~~id~~~~~e~v~ 193 (196)
|. ...+.+... ..++.||++.++++++
T Consensus 169 ~~----~~~~~~~~~~~~v~~Id~~~~~eev~ 196 (207)
T 2qt1_A 169 YL----KYRQEMQDITWEVVYLDGTKSEEDLF 196 (207)
T ss_dssp HH----HHHHHGGGCSSCCEEEETTSCHHHHH
T ss_pred HH----HHHHHHHhcCCeEEEecCCCCHHHHH
Confidence 22 233444443 3677899999888764
No 71
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.54 E-value=1.5e-14 Score=106.54 Aligned_cols=131 Identities=24% Similarity=0.337 Sum_probs=77.0
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCc----------EecHHHHHHHHHHcCCcchHHHHHHHHcCCC-------
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIKEGKI------- 79 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~----------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------- 79 (196)
...++.+|+|.|+|||||||+|+.|++.+++. +++.|++++.. ....... ...+..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~------~~~~~~~-~~~g~~~f~~~~~ 90 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL------TSEQKAK-ALKGQFNFDHPDA 90 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC------CHHHHHH-HHTTCSCTTSGGG
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc------Chhhhhh-hccCCCCCCCcch
Confidence 34466899999999999999999999999977 78898877521 0011110 111111
Q ss_pred CCHHHHHHHHHHHHH----------------------hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHH
Q 029252 80 VPSEVTIKLLQKAME----------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (196)
Q Consensus 80 ~~~~~~~~~~~~~l~----------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~ 137 (196)
.........+..... ......+|+||.+...+. .+.. .++.+|||++|++++
T Consensus 91 ~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~----~~d~vi~l~~~~e~~ 164 (252)
T 1uj2_A 91 FDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD----LFQMKLFVDTDADTR 164 (252)
T ss_dssp BCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH----HCSEEEEEECCHHHH
T ss_pred hhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH----hcCeeEEEeCCHHHH
Confidence 111222334433321 013567999996543111 1222 257899999999999
Q ss_pred HHHHhhcc-CCCCCCcHHHHHHHHH
Q 029252 138 ERRILNRN-QGREDDNVETIRKRFK 161 (196)
Q Consensus 138 ~~R~~~R~-~~r~~~~~~~~~~~~~ 161 (196)
.+|+..|. ..+ ..+.+.+.+++.
T Consensus 165 ~~R~~~R~~~~r-g~~~e~i~~~~~ 188 (252)
T 1uj2_A 165 LSRRVLRDISER-GRDLEQILSQYI 188 (252)
T ss_dssp HHHHHHHHHHHS-CCCHHHHHHHHH
T ss_pred HHHHHHHHHhhh-CCCHHHHHHHHH
Confidence 99999881 111 124455555543
No 72
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.53 E-value=3.5e-14 Score=98.61 Aligned_cols=152 Identities=14% Similarity=0.214 Sum_probs=79.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (196)
++.+|+|.|+|||||||+++.|+..++..+++.|++.+... +......++. . +..........++.. +. ...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~-~--g~~~~~~~~~~~l~~-l~--~~~ 74 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDL-E--GEEGFRDREEKVINE-LT--EKQ 74 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHH-H--HHHHHHHHHHHHHHH-HH--TSS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHH-H--hHHHHHHHHHHHHHH-HH--hCC
Confidence 34689999999999999999999999999999988876642 2222211110 0 000000111122332 22 133
Q ss_pred eEEEe---ccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCC----CCc-HHHHHHHHHHHHhcchhHH
Q 029252 100 KFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE----DDN-VETIRKRFKVFLESSLPVV 171 (196)
Q Consensus 100 ~~iid---g~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~----~~~-~~~~~~~~~~~~~~~~~~~ 171 (196)
.+++. +..........+.. ++.++|++++++++.+|+..|. +++ .+. .+.+...+....
T Consensus 75 ~~v~~~~~~~~~~~~~~~~l~~-----~~~~i~l~~~~~~l~~R~~~r~-~r~~~~~~~~~~~~~~~~~~~r~------- 141 (173)
T 1kag_A 75 GIVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDK-KRPLLHVETPPREVLEALANERN------- 141 (173)
T ss_dssp SEEEECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC-------CCSSSSCCCHHHHHHHHHHHH-------
T ss_pred CeEEECCCeEEecHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCC-CCCCCCCCCchHHHHHHHHHHHH-------
Confidence 45553 23333333343443 4579999999999999998871 121 222 444444332221
Q ss_pred HHHHhcCcEEEEeCC-CCceeEE
Q 029252 172 QYYEAKGKVRKVIFC-SPIFILV 193 (196)
Q Consensus 172 ~~~~~~~~~~~id~~-~~~e~v~ 193 (196)
+.|.... .++||++ .++++++
T Consensus 142 ~~~~~~a-~~~id~~~~~~~~~~ 163 (173)
T 1kag_A 142 PLYEEIA-DVTIRTDDQSAKVVA 163 (173)
T ss_dssp HHHHHHC-SEEC-----CHHHHH
T ss_pred HHHHhhC-CEEEECCCCCHHHHH
Confidence 2343333 3577776 6776653
No 73
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.51 E-value=4.4e-13 Score=93.41 Aligned_cols=120 Identities=13% Similarity=0.180 Sum_probs=66.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHHHHHcC--CcchHHHHHHHHcCCC-CCH---HHH---HHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSG--SENGTMIQNMIKEGKI-VPS---EVT---IKL 88 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~---~~~---~~~ 88 (196)
++.+|+|.|+|||||||+++.|+++++..++ +.|++........ ...+..+. ..+.. ... .+. ...
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAWAEG 78 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhcccc---CCCccccchhHHHHHHHHHHH
Confidence 4678999999999999999999999976544 5766544321100 00000000 00000 000 111 112
Q ss_pred HHHHHHhcCCCeEEEeccCC-CHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 89 LQKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 89 ~~~~l~~~~~~~~iidg~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
+...+. .+..+|+|+... .......+.+.....+..+|||++|.+++.+|+..|
T Consensus 79 ~~~~~~--~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r 133 (178)
T 1qhx_A 79 VVAMAR--AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR 133 (178)
T ss_dssp HHHHHH--TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT
T ss_pred HHHHHh--cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhh
Confidence 233232 366789998543 222222233212223346889999999999999988
No 74
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.50 E-value=2.7e-14 Score=105.88 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=42.7
Q ss_pred CCCcEEEEEEcCHHHHHHHHhhccCCCCC---CcH---HHHHHHHHHHHhc--chhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 122 IEPEFVLFFDCSEEEMERRILNRNQGRED---DNV---ETIRKRFKVFLES--SLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 122 ~~~~~~i~l~~~~~~~~~R~~~R~~~r~~---~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
..|+++|||++|++++.+|+.+| +|+. ... +.+..+++.+... ..+.+..|.. ..+++||++.++++++
T Consensus 173 ~~pd~vi~L~~~~e~~~~Ri~~R--~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~ 249 (263)
T 1p5z_B 173 LELDGIIYLQATPETCLHRIYLR--GRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKY 249 (263)
T ss_dssp HCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHhc--CCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHH
Confidence 46899999999999999999988 4431 222 2223333333221 1122222233 4589999999888764
No 75
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.49 E-value=1.1e-13 Score=98.80 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=84.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCCH--------H
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS--------E 83 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--------~ 83 (196)
++.+|+|.|+|||||||+++.|++.++. ..++..+..|+.... +.. ....+......+.++.. .
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYG 90 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeec
Confidence 4578999999999999999999998842 222211111110000 000 00112222222222110 0
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCC-CcEEEEEE-cCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029252 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE-PEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFK 161 (196)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~-~~~~i~l~-~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~ 161 (196)
.....+...+. .+..+|+|+.+ .....+.+ .... ...+|||+ +|++++.+|+..| ++ ++.+.+.+|+.
T Consensus 91 ~~~~~i~~~l~--~g~~vi~d~~~---~~~~~l~~-~~~~~~~~~i~l~~~s~e~l~~Rl~~R--~~--~~~~~i~~rl~ 160 (204)
T 2qor_A 91 TLKSEYDLAVG--EGKICLFEMNI---NGVKQLKE-SKHIQDGIYIFVKPPSIDILLGRLKNR--NT--EKPEEINKRMQ 160 (204)
T ss_dssp EEHHHHHHHHH--TTCEEEEECCH---HHHHHHHH-CSSCSCCEEEEEECSCHHHHHHHHHTC--TT--SCHHHHHHHHH
T ss_pred CCHHHHHHHHH--cCCeEEEEECH---HHHHHHHH-hcCCCCeEEEEEcCCCHHHHHHHHHHc--CC--CCHHHHHHHHH
Confidence 00233444454 48889999644 22333333 2221 23789998 9999999999988 43 35677888777
Q ss_pred HHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 162 VFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
..+....+. |....+++++| + +++++
T Consensus 161 ~~~~~~~~~---~~~~~d~vi~n-~-~~e~~ 186 (204)
T 2qor_A 161 ELTREMDEA---DKVGFNYFIVN-D-DLART 186 (204)
T ss_dssp HHHHHHHHH---HHHTCSEEEEC-S-SHHHH
T ss_pred HHHHHHHHh---hhccCcEEEEC-c-CHHHH
Confidence 665322211 34444555444 4 55544
No 76
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.48 E-value=7.9e-13 Score=97.34 Aligned_cols=40 Identities=33% Similarity=0.589 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~ 59 (196)
++.+|.|.|++||||||+++.|++++|+.+++.+.+++..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~ 65 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVL 65 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence 3478999999999999999999999999999999998664
No 77
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.48 E-value=1.1e-12 Score=93.30 Aligned_cols=159 Identities=13% Similarity=0.159 Sum_probs=82.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcch-HHHHHHHHcCC-CC-------------CH---
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGK-IV-------------PS--- 82 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~-~~-------------~~--- 82 (196)
.++|.|.|++||||||+++.|++++|+.+++ +++++..... .... ..+...-.... +. ..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-GRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-cCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 4689999999999999999999999999999 7777653211 1010 11111100000 00 00
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252 83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV 162 (196)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (196)
......+.+ +......++|++|.. -. .+. ......+.|||++|++++.+|+.++. + .+.+...+++..
T Consensus 84 ~~~~~~i~~-la~~~~~~~Vi~Gr~--g~---~vl--~~~~~~~~V~L~A~~e~r~~R~~~~~-~---~~~~~~~~~i~~ 151 (201)
T 3fdi_A 84 IRQFNFIRK-KANEEKESFVIVGRC--AE---EIL--SDNPNMISAFILGDKDTKTKRVMERE-G---VDEKTALNMMKK 151 (201)
T ss_dssp HHHHHHHHH-HHHTSCCCEEEESTT--HH---HHT--TTCTTEEEEEEEECHHHHHHHHHHHH-T---CCHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhhcCCCEEEEECC--cc---hhc--CCCCCeEEEEEECCHHHHHHHHHHHh-C---CCHHHHHHHHHH
Confidence 111222222 220024457787642 11 111 11123579999999999999998771 2 233444444443
Q ss_pred HHhcchhHHHHHH------hcCcEEEEeCC-CCceeEE
Q 029252 163 FLESSLPVVQYYE------AKGKVRKVIFC-SPIFILV 193 (196)
Q Consensus 163 ~~~~~~~~~~~~~------~~~~~~~id~~-~~~e~v~ 193 (196)
....-.+.+..|. ....-++||++ .++++++
T Consensus 152 ~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv 189 (201)
T 3fdi_A 152 MDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTAT 189 (201)
T ss_dssp HHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHH
Confidence 3333333333331 11123467765 4776654
No 78
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.46 E-value=3.6e-13 Score=95.05 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~ 62 (196)
..+|+|+|++||||||+++.|++.+|+.+++.|++.++....
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE 53 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence 478999999999999999999999999999999998887553
No 79
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.46 E-value=6.1e-14 Score=101.08 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=89.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----HHcCCcchHHHHHH-------H-----------HcC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGTMIQNM-------I-----------KEG 77 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~-------~-----------~~~ 77 (196)
++.+|+|.|++||||||+++.|++.+++.+++.|++++.. ...+. ...+... + ..|
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g 79 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDN 79 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCC
Confidence 3578999999999999999999999999999999998863 22222 1111111 0 111
Q ss_pred CCCCH----HHH-------------HHHHH---HHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHH
Q 029252 78 KIVPS----EVT-------------IKLLQ---KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (196)
Q Consensus 78 ~~~~~----~~~-------------~~~~~---~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~ 137 (196)
...+. ... ...+. ..+. .+.++|++|-... . . ....++++|||++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~--~~~~~vi~g~~~~--~-----~-~~~~~~~vi~l~a~~e~~ 149 (219)
T 2h92_A 80 EDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELA--AEKGIVMDGRDIG--T-----V-VLPDADLKVYMIASVEER 149 (219)
T ss_dssp EECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHH--TTCCEEEEESSCC--C-----C-CCTTCSEEEEEECCHHHH
T ss_pred ccchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhc--cCCcEEEEcCCcc--c-----e-ecCCCCEEEEEECCHHHH
Confidence 11100 010 11111 1122 3557889973210 0 0 122367899999999999
Q ss_pred HHHHhhc--cCCCCCCcHHHHHHHHHHHH--hcchhHHHHHHhcCcEEEEeCCC-CceeEE
Q 029252 138 ERRILNR--NQGREDDNVETIRKRFKVFL--ESSLPVVQYYEAKGKVRKVIFCS-PIFILV 193 (196)
Q Consensus 138 ~~R~~~R--~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~id~~~-~~e~v~ 193 (196)
.+|+..+ .++. ..+.+.+.+++.... +..+.+.+.|.. ...++||++. ++++++
T Consensus 150 ~~R~~~~~~~r~~-~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~~~~ee~~ 208 (219)
T 2h92_A 150 AERRYKDNQLRGI-ESNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTGKSIEEVT 208 (219)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTTCCHHHHH
T ss_pred HHHHHHHHHhcCc-ccCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCCCCHHHHH
Confidence 9997542 1233 234566666664321 111111122222 3346888874 777654
No 80
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.45 E-value=8.9e-14 Score=99.76 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=65.6
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcCCcch-HHHHHHHHcCCCCCHHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLL 89 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~------~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 89 (196)
...++.+|+|.|+|||||||+++.|++.++ ..+++.|.+ +........+. ..-...+ ......+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~~~~~~~~r~~~~--------~~~~~~~ 91 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKDLGFSEADRNENI--------RRIAEVA 91 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTTCCSSHHHHHHHH--------HHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccccCCCHHHHHHHH--------HHHHHHH
Confidence 345678999999999999999999999886 667775443 32211111110 0000000 0011222
Q ss_pred HHHHHhcCCCeEEEeccCCC-HHHHHHHHhh-c-------CCCCcEEEEEEcCHHHHHHHH
Q 029252 90 QKAMEESGNDKFLIDGFPRN-EENRAAFEAV-T-------KIEPEFVLFFDCSEEEMERRI 141 (196)
Q Consensus 90 ~~~l~~~~~~~~iidg~~~~-~~~~~~~~~~-~-------~~~~~~~i~l~~~~~~~~~R~ 141 (196)
...+. .+..+|+| +... ......+..+ . ...|+++|||++|++++.+|+
T Consensus 92 ~~~l~--~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 92 KLFAD--SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHHH--TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHHH--CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 23333 36778888 4322 2333333332 1 125689999999999999995
No 81
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.44 E-value=1.9e-12 Score=94.41 Aligned_cols=165 Identities=21% Similarity=0.250 Sum_probs=91.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH----cCCcc--hHHHHHHH------------------
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSEN--GTMIQNMI------------------ 74 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~----~~~~~--~~~~~~~~------------------ 74 (196)
.++.+|+|.|++||||||+++.|++.+|+.+++.|++.+.... .+.+. ...+...+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~ 93 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF 93 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe
Confidence 4567899999999999999999999999999999999986432 23221 11111111
Q ss_pred HcCCC----CCH-HHH------------HHHHHHHHHh-cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHH
Q 029252 75 KEGKI----VPS-EVT------------IKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136 (196)
Q Consensus 75 ~~~~~----~~~-~~~------------~~~~~~~l~~-~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~ 136 (196)
..|.. +.. .+. ...+...... ..+.++|+||..... ..+ ..++++|||++|+++
T Consensus 94 ~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~---~~l-----~~~d~vi~L~a~~e~ 165 (236)
T 1q3t_A 94 VGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGT---VVL-----PQAELKIFLVASVDE 165 (236)
T ss_dssp ETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSS---SSG-----GGCSEEEEEECCHHH
T ss_pred ECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchh---hhc-----cCCCEEEEEECCHHH
Confidence 11211 111 111 1112111111 135678899865421 011 135789999999999
Q ss_pred HHHHHhhc--cCCCCCCcHHHHHHHHHH--HHhcchhHHHHHHhcCcEEEEeCC-CCceeEE
Q 029252 137 MERRILNR--NQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGKVRKVIFC-SPIFILV 193 (196)
Q Consensus 137 ~~~R~~~R--~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~~-~~~e~v~ 193 (196)
+.+|+..| .+++ ..+.+.+.+++.. +......+.+.|.. ...++||++ .++++++
T Consensus 166 ~~~R~~~~~~~R~~-~~~~e~~~~~i~~R~~~~~~~~~~p~~~~-~d~~vId~~~~s~eev~ 225 (236)
T 1q3t_A 166 RAERRYKENIAKGI-ETDLETLKKEIAARDYKDSHRETSPLKQA-EDAVYLDTTGLNIQEVV 225 (236)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHTTCSSSCCSCC-TTCEEEECSSCCHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHHhhhhhhccccccccc-CCEEEEcCCCCCHHHHH
Confidence 99998332 1133 2344555555532 11111111112222 234688888 4877654
No 82
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.44 E-value=4e-13 Score=98.97 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=70.5
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHc----CCcchHHHHHHHHcCCCCCHHHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKS----GSENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (196)
...++.+|+|.|+|||||||+++.|++.++ ..+++.|.+ +..... ....+......... ....+....+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~ 103 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVT 103 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHH
Confidence 345678999999999999999999999986 456666543 321100 00011000111000 00111222333
Q ss_pred HHHHhcCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 91 KAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 91 ~~l~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
..+. .+..+|+|+++....+...+.+. .......++++++|++++.+|..+|
T Consensus 104 ~~~~--~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R 157 (253)
T 2p5t_B 104 KLSS--LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR 157 (253)
T ss_dssp HHHH--TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred HHHh--cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence 3332 35689999988765543333221 2222334778899999999999988
No 83
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.43 E-value=3.7e-13 Score=97.80 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=41.2
Q ss_pred CCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH--HHHHHHHHHHHhcchhHHHHH--HhcCcEEEEeCCCCceeEEe
Q 029252 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNV--ETIRKRFKVFLESSLPVVQYY--EAKGKVRKVIFCSPIFILVI 194 (196)
Q Consensus 121 ~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~e~v~~ 194 (196)
...||++|||++|++++.+|+.+| +|..+.. ....+++...+..+ ...| .....+++||++.+++++..
T Consensus 144 ~~~pD~vi~Ld~~~e~~~~Ri~~R--~r~~e~~~~~~~~~rv~~~~~~~---~~~~~~~~~~~~~vId~~~~~eev~~ 216 (230)
T 2vp4_A 144 HVQADLIIYLRTSPEVAYERIRQR--ARSEESCVPLKYLQELHELHEDW---LIHQRRPQSCKVLVLDADLNLENIGT 216 (230)
T ss_dssp CCCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHH---HTSCCSSCCCEEEEEECCC-------
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHc--CCcccccCcHHHHHHHHHHHHHH---HHHhcccCCCCEEEEECCCCHHHHHH
Confidence 567999999999999999999988 5543321 13445554443321 1112 23446899999999998864
No 84
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.41 E-value=8.3e-13 Score=92.50 Aligned_cols=133 Identities=18% Similarity=0.323 Sum_probs=82.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCCc--------chHHHHHHHHcCCCCCHH--------HH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSE--------NGTMIQNMIKEGKIVPSE--------VT 85 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--------~~ 85 (196)
.|+|+||||||||||++.|.+.+. ...++.....|.. +.++. ..+.+..++..+.++.+. ..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p-R~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~ 81 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP-RAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC-CCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence 489999999999999999998874 2334433333332 11111 125666677766665332 12
Q ss_pred HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029252 86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE 165 (196)
Q Consensus 86 ~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~ 165 (196)
...+...+. .+..+|+|..+ +....+.......+..++.+..+.+++.+|+..| + .++.+.+.+|+.....
T Consensus 82 ~~~v~~~l~--~g~~vil~id~---~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~R--g--~e~~e~i~~Rl~~a~~ 152 (186)
T 1ex7_A 82 VASVKQVSK--SGKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGR--G--TETEESINKRLSAAQA 152 (186)
T ss_dssp HHHHHHHHH--HTSEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHH--C--CSCHHHHHHHHHHHHH
T ss_pred cceeeehhh--CCCEEEecCCH---HHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhc--C--CCCHHHHHHHHHHHHH
Confidence 555666665 37888998533 3333343311223444555566789999999988 3 3567889999877653
No 85
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.41 E-value=4e-12 Score=89.29 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHH--HH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK--LL 89 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 89 (196)
...++.+|+|.|+|||||||+++.|++.++ ..+++.|.+ +........+...-.. ..... .+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~r~----------~~~~~~~~~ 77 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSEGAGFTREERL----------RHLKRIAWI 77 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTTTCCCCHHHHH----------HHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhhccCCChhhHH----------HHHHHHHHH
Confidence 344678999999999999999999999885 245555443 3322111111100000 00111 11
Q ss_pred HHHHHhcCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhh
Q 029252 90 QKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILN 143 (196)
Q Consensus 90 ~~~l~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~ 143 (196)
...+. ..+..+|+|+..........+..+ ....++.+|||++|++++.+|+..
T Consensus 78 ~~~~~-~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 78 ARLLA-RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp HHHHH-TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred HHHHH-hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence 11122 236667778765443333333321 233578899999999999999753
No 86
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.38 E-value=3.3e-11 Score=86.87 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK 61 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~ 61 (196)
++++|.|.|++||||||+++.|++++++.+++ .+++.....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~ 53 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE 53 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence 35789999999999999999999999999999 566655433
No 87
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.37 E-value=1.9e-11 Score=88.53 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=36.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~ 59 (196)
++.+|+|.|+|||||||+++.|++++++.+++.+.+++..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 4679999999999999999999999999999999998774
No 88
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.37 E-value=3.1e-12 Score=103.10 Aligned_cols=151 Identities=17% Similarity=0.291 Sum_probs=84.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHH---H
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL---Q 90 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 90 (196)
.++.+|+|+|.|||||||+++.|++.+++ .+++.|++.+....... ....+......+......+....+ .
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~-~~~~f~~~~~~~~~~re~~~~~~l~~~~ 111 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYS-SYNFFRPDNEEAMKVRKQCALAALRDVK 111 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCC-CGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCc-cccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999998842 45788886655432211 110000000000000001111112 2
Q ss_pred HHHHhcCCCeEEEeccCCCHHHHHHHHhh-cCCC-CcEEEEEEcC-HHHHHHHHhhccCCCCC----CcH---HHHHHHH
Q 029252 91 KAMEESGNDKFLIDGFPRNEENRAAFEAV-TKIE-PEFVLFFDCS-EEEMERRILNRNQGRED----DNV---ETIRKRF 160 (196)
Q Consensus 91 ~~l~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~-~~~~i~l~~~-~~~~~~R~~~R~~~r~~----~~~---~~~~~~~ 160 (196)
..+....+..+|+|+..........+.++ .... ..+++++.++ ++++.+|+..|...+++ +.. +.+.+|+
T Consensus 112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~Ri 191 (520)
T 2axn_A 112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRI 191 (520)
T ss_dssp HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHHHH
Confidence 22322357889999988888777665442 1112 2346666777 67777888666222221 222 3456677
Q ss_pred HHHHhcchhH
Q 029252 161 KVFLESSLPV 170 (196)
Q Consensus 161 ~~~~~~~~~~ 170 (196)
..|...+.++
T Consensus 192 ~~y~~~Yepi 201 (520)
T 2axn_A 192 SCYEASYQPL 201 (520)
T ss_dssp HHHHTTCCCC
T ss_pred Hhhhhhhccc
Confidence 7777766665
No 89
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.32 E-value=3.4e-11 Score=85.54 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=66.6
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh---CCc--EecHHHHHHHHHHcCCcch-HHHHHHHHcCCCCCHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQK 91 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~---~~~--~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 91 (196)
..++.+|+|.|+|||||||+++.|+..+ |.. +++.+++.... .....+. ......+. . ...+..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~-~~~~~~~~~~~~~~~~--------~-~~~~~~ 91 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL-NRDLSFKAEDRAENIR--------R-VGEVAK 91 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT-TTTCCSSHHHHHHHHH--------H-HHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh-hcccCcChHHHHHHHH--------H-HHHHHH
Confidence 3457899999999999999999999988 544 77766543211 1111111 00000000 0 111122
Q ss_pred HHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH
Q 029252 92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (196)
Q Consensus 92 ~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~ 141 (196)
.+. ..+..+|.............+.+.........|||++|.+++.+|+
T Consensus 92 ~~~-~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 92 LFA-DAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHH-HTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred HHH-hCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 222 1366677776555555666666522222345799999999999997
No 90
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.31 E-value=1.2e-11 Score=90.45 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=41.8
Q ss_pred CCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH--HHHHHHHHHHHhcc-----hhH-HHHHHhcCcEEEEeCCCCceeE
Q 029252 122 IEPEFVLFFDCSEEEMERRILNRNQGREDDNV--ETIRKRFKVFLESS-----LPV-VQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 122 ~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~--~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~id~~~~~e~v 192 (196)
..|+.+|||++|++++.+|+.+| ++..+.. ....+++...+..+ .++ ++.| ....+++||++.+++++
T Consensus 148 ~~pd~~i~l~~~~~~~~~R~~~R--~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v 223 (241)
T 2ocp_A 148 ITLHGFIYLQASPQVCLKRLYQR--AREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEE 223 (241)
T ss_dssp HCCCEEEEEECCHHHHHHHHHHS--CCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTC
T ss_pred cCCCEEEEEECCHHHHHHHHHhc--CCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhC
Confidence 36999999999999999999988 5543331 22223332222111 000 0112 34579999999987765
No 91
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.28 E-value=1.2e-10 Score=81.10 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=60.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh---CCcEecHH-HHHHHHHHcCCcch-HHHHHHHHcCCCCCHHHHHHH--HHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAG-DLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKL--LQK 91 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~-d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~ 91 (196)
.++.+|+|+|++||||||+++.|++.+ |+.++..+ +.++........+. .... ..+... ...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 71 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDRE-----------ENVRRIAEVAK 71 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHH-----------HHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHH-----------HHHHHHHHHHH
Confidence 346789999999999999999999988 76665332 33332111110000 0000 011111 111
Q ss_pred HHHhcCCCeEEEeccCC-CHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 92 AMEESGNDKFLIDGFPR-NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 92 ~l~~~~~~~~iidg~~~-~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
.+.. .+. +++.++.. .......+..+ ....++.+|||++|++++.+|+..|
T Consensus 72 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 72 LFAD-AGL-VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHHH-TTC-EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HHHH-CCC-EEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 1222 343 44444332 22112222211 2335788999999999999997643
No 92
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.26 E-value=2e-12 Score=96.99 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR 57 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~ 57 (196)
++.+|.|.|++||||||+++.|++.++ ..+++.|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 457899999999999999999999887 68888888764
No 93
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.25 E-value=7.3e-11 Score=96.42 Aligned_cols=115 Identities=15% Similarity=0.180 Sum_probs=65.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh---CCcEecHH-HHHHHHHHcCCcchH-HHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAG-DLLRAEIKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKAM 93 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~-d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 93 (196)
.++.+|+|+|+|||||||+++.|++++ +..++..| |.++........+.. .-...+. . ....+...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r-------~-i~eva~~~l 121 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR-------R-IAEVAKLFA 121 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH-------H-HHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH-------H-HHHHHHHHH
Confidence 367899999999999999999999998 76665542 444432221111110 0011110 0 111222222
Q ss_pred HhcCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhh
Q 029252 94 EESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILN 143 (196)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~ 143 (196)
. .+..+|.+...........+.++ ....++++|||++|++++.+|+.+
T Consensus 122 ~--~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 122 D--AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp H--TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred h--CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence 2 35666666322222222333322 334567899999999999999864
No 94
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.23 E-value=2.8e-13 Score=97.14 Aligned_cols=67 Identities=21% Similarity=0.159 Sum_probs=39.8
Q ss_pred CCcEEEEEEcCHHHHHHHHhhccC---CCCCCc---HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252 123 EPEFVLFFDCSEEEMERRILNRNQ---GREDDN---VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV 193 (196)
Q Consensus 123 ~~~~~i~l~~~~~~~~~R~~~R~~---~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~ 193 (196)
.++.+|||++|++++.+|+..|.. ++..+. ...+.+++...+. .+.+.+. ...+++||++.++++++
T Consensus 132 ~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~---~~~~~~~-~~~~~vId~~~~~~~v~ 204 (214)
T 1gtv_A 132 KPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYA---ELAAQGW-GGRWLVVGADVDPGRLA 204 (214)
T ss_dssp BCEEEEEEEEEHHHHHHHHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHH---HHHHEEE-EEEEEEEEEEEBHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHcccccccccccccccccHHHHHHHHHHHH---HHHHhCC-CCCEEEEeCCCCHHHHH
Confidence 689999999999999999998811 111111 1344444432221 1211111 13578999998887654
No 95
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.20 E-value=3.4e-11 Score=86.06 Aligned_cols=134 Identities=16% Similarity=0.305 Sum_probs=68.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCCHH--------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE-------- 83 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~-------- 83 (196)
++.+|+|.||+||||||+++.|++.++. .........+....+ +.. ....+...+..+.++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg 86 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG 86 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence 4678999999999999999999988742 222111111100000 000 012222332222221110
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEc-CHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFKV 162 (196)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (196)
.....+...+. .+..+|+|... .....+.. ....+ .+||+.. +.+++.+|+.+| +. ++.+.+.+|+..
T Consensus 87 ~~~~~i~~~l~--~g~~vild~~~---~g~~~~~~-~~~~~-~~i~i~~ps~~~l~~Rl~~R--~~--~~~e~i~~Rl~~ 155 (208)
T 3tau_A 87 TPLEYVEEKLA--AGVDIFLEIEV---QGAMQVRK-AMPEG-IFIFLTPPDLSELKNRIIGR--GT--ESMEVVEERMET 155 (208)
T ss_dssp EEHHHHHHHHH--TTCCEEEECCH---HHHHHHHH-HCTTS-EEEEEECTTTTTSSCC-----------CCHHHHHHHHH
T ss_pred CcHHHHHHHHH--cCCeEEEEeeH---HHHHHHHH-hCCCe-EEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHH
Confidence 01233455554 47788998633 33333443 34444 4555554 489999999988 32 455778888876
Q ss_pred HH
Q 029252 163 FL 164 (196)
Q Consensus 163 ~~ 164 (196)
..
T Consensus 156 ~~ 157 (208)
T 3tau_A 156 AK 157 (208)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 96
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.18 E-value=8.9e-11 Score=83.43 Aligned_cols=115 Identities=20% Similarity=0.214 Sum_probs=53.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh---CC--cEecHHHHHHHHHH---cCCcchHHHHHHHHcCCCCCHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEIK---SGSENGTMIQNMIKEGKIVPSEVTIKLL 89 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~---~~--~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (196)
...+.+|+|.|++||||||+++.|+..+ +. .+++.|.+...... .+...+. .... + .+....+...+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~---~~~~-~-~~d~~~l~~~v 93 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF---EYYY-L-QWDVEWLTHQL 93 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHH---HHHH-T-SSCHHHHHHHT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCcc---CCCc-c-ccCHHHHHHHH
Confidence 4456899999999999999999999876 33 33444543322111 1111111 1111 1 11112211111
Q ss_pred HHHH-----------------------HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 90 QKAM-----------------------EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 90 ~~~l-----------------------~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
...+ ....+..+|+||....... + ...+|.+||+++|.+++.+|+..|
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~----~~~~d~~i~v~~~~~~~~~R~~~R 164 (201)
T 1rz3_A 94 FRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---W----RPFFDFVVYLDCPREIRFARENDQ 164 (201)
T ss_dssp GGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---T----GGGCSEEEEECCC-----------
T ss_pred HHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---H----HhhcCEEEEEeCCHHHHHHHHhcC
Confidence 0000 0012567889986533211 1 123679999999999999999988
No 97
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.17 E-value=7.5e-12 Score=89.14 Aligned_cols=156 Identities=16% Similarity=0.235 Sum_probs=58.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHc---CC----cchHHHHHHHHcCCCCCHH-------
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSE------- 83 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~------- 83 (196)
.++.+|+|.|++||||||+++.|+..+ ....+...+..+..... +. .....+......+..+...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence 356799999999999999999999877 21111111111100000 00 0011222222222221100
Q ss_pred -HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEE-cCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029252 84 -VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFK 161 (196)
Q Consensus 84 -~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~ 161 (196)
.....+...+. .+..+|+|+.+.... .+.. ....+ +++|+. ++.+++.+|+.+| + ..+.+.+.+++.
T Consensus 84 g~~~~~i~~~l~--~g~~vv~d~~~~~~~---~~~~-~~~~~-~~i~~~~~~~~~~~~Rl~~R--~--~~~~~~~~~rl~ 152 (207)
T 2j41_A 84 GTPVQYVKDTMD--EGHDVFLEIEVEGAK---QVRK-KFPDA-LFIFLAPPSLEHLRERLVGR--G--TESDEKIQSRIN 152 (207)
T ss_dssp EEEHHHHHHHHH--TTCEEEEECCGGGHH---HHHH-HCTTS-EEEEEECCC----------------------------
T ss_pred CCCHHHHHHHHH--cCCeEEEEECHHHHH---HHHH-hcCCe-EEEEEECCCHHHHHHHHHhc--C--CCCHHHHHHHHH
Confidence 01233444444 367899997544322 2333 22122 344444 5688999999888 3 233456666666
Q ss_pred HHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252 162 VFLESSLPVVQYYEAKGKVRKVIFCSPIFIL 192 (196)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 192 (196)
.+.... .++ ...+++ |+++ +++++
T Consensus 153 ~~~~~~----~~~-~~~d~v-I~n~-~~e~~ 176 (207)
T 2j41_A 153 EARKEV----EMM-NLYDYV-VVND-EVELA 176 (207)
T ss_dssp ---CGG----GGG-GGCSEE-EECS-SHHHH
T ss_pred HHHHHH----hcc-ccCCEE-EECC-CHHHH
Confidence 555332 122 233454 4444 56554
No 98
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.16 E-value=7.5e-11 Score=86.78 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=66.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-HHH--cCCcchHHHHH---H-HHcC----CCCCHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-EIK--SGSENGTMIQN---M-IKEG----KIVPSEVTIKLLQ 90 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~-~~~--~~~~~~~~~~~---~-~~~~----~~~~~~~~~~~~~ 90 (196)
.+|+|.|+|||||||+++.|+++++..+++.|++... ... ...+....... . +... ..+....+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 4789999999999999999999999999998875421 000 00110000000 0 0000 0122233333333
Q ss_pred HHHHh-cCCCeEEEeccCCCHHHHHHHHhhcC---CCC-cEEEEEEcCH-HHHHHHHhhc
Q 029252 91 KAMEE-SGNDKFLIDGFPRNEENRAAFEAVTK---IEP-EFVLFFDCSE-EEMERRILNR 144 (196)
Q Consensus 91 ~~l~~-~~~~~~iidg~~~~~~~~~~~~~~~~---~~~-~~~i~l~~~~-~~~~~R~~~R 144 (196)
..+.. ..+..+|+++... .....+.. .. ... ..++||++|. +++.+|+.+|
T Consensus 82 ~~i~~~~~g~~vIl~gg~~--~~~~~~~~-~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R 138 (253)
T 2ze6_A 82 FEVDWRKSEEGLILEGGSI--SLLNCMAK-SPFWRSGFQWHVKRLRLGDSDAFLTRAKQR 138 (253)
T ss_dssp HHHHTTTTSSEEEEEECCH--HHHHHHHH-CTTTTSSCEEEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEeccHH--HHHHHHHh-cccccccCceEEEEecchhHHHHHHHHHHH
Confidence 33311 1366677775321 22222222 20 122 2589999997 9999999999
No 99
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.16 E-value=1.4e-09 Score=77.25 Aligned_cols=135 Identities=16% Similarity=0.244 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH---cCC----cchHHHHHHHHcCCCCCH--------HH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK---SGS----ENGTMIQNMIKEGKIVPS--------EV 84 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~--------~~ 84 (196)
++.+++|.||+||||||+++.|+..+....+...+..+.... .+. .....+......+..... ..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence 357899999999999999999998764222222111110000 000 000111221111111000 00
Q ss_pred HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL 164 (196)
Q Consensus 85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~ 164 (196)
....+...+. .+..+++|+.+. ....+.. ....+..+++...+++++.+|+.+| ++ ++.+.+.+|+....
T Consensus 86 ~~~~i~~~l~--~g~~vi~d~~~~---~~~~~~~-~~~~~~~v~~~~~~~e~l~~Rl~~R--~~--~~~~~i~~rl~~~~ 155 (205)
T 3tr0_A 86 EKDWVLRQLK--AGRDVLLEIDWQ---GARQIRE-LFPPALSIFILPPSIEALRERLIKR--RQ--DDTAIIEQRLALAR 155 (205)
T ss_dssp EHHHHHHHHH--TTCEEEEECCHH---HHHHHHH-HCTTCEEEEEECSCHHHHHHHHHTC--TT--SCSSTHHHHHHHHH
T ss_pred hHHHHHHHHH--cCCeEEEEECHH---HHHHHHH-hCCCcEEEEEECcCHHHHHHHHHHh--CC--CCHHHHHHHHHHHH
Confidence 0123444444 367788886432 2233333 3444544444555799999999988 33 33445666766654
No 100
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=99.14 E-value=2.5e-10 Score=91.16 Aligned_cols=148 Identities=16% Similarity=0.261 Sum_probs=81.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCC---CCHHHHHH--
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI---VPSEVTIK-- 87 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-- 87 (196)
..++.+|+|.|.|||||||+++.|++.++ ...++.+++........... ..+. ..+.. ....+...
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~-~ifd---~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF-EFFL---PDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG-GGGC---TTCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc-cccC---CCCHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999874 45667766554432111110 0000 00000 00011111
Q ss_pred -HHHHHHHhcCCCeEEEeccCCCHHHHHHHHhh-cCCCCcEEEEEE---cCHHHHHHHHhhccCCCCC---CcH----HH
Q 029252 88 -LLQKAMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFD---CSEEEMERRILNRNQGRED---DNV----ET 155 (196)
Q Consensus 88 -~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~l~---~~~~~~~~R~~~R~~~r~~---~~~----~~ 155 (196)
.+...+....+..+|+|........+..+.+. ..... .++|++ .+++.+.+|+..+...+++ .+. +.
T Consensus 112 ~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~-~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~ 190 (469)
T 1bif_A 112 NDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGY-KTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATED 190 (469)
T ss_dssp HHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHH
Confidence 12334433457789999988887776666442 11122 356666 5578888887765222232 122 34
Q ss_pred HHHHHHHHHhcchhH
Q 029252 156 IRKRFKVFLESSLPV 170 (196)
Q Consensus 156 ~~~~~~~~~~~~~~~ 170 (196)
+.+|+..|...+.++
T Consensus 191 ~~~R~~~y~~~ye~l 205 (469)
T 1bif_A 191 FMRRIECYENSYESL 205 (469)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHhccEeEEC
Confidence 455666666666555
No 101
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.13 E-value=7.4e-10 Score=89.76 Aligned_cols=113 Identities=17% Similarity=0.114 Sum_probs=68.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (196)
..+.+|+++|++||||||+++.|+++++. .+++.|. ++..+.....+...-.... ...+...+...+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~-ir~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l 441 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV-VRTHLSRGLGFSKEDRITN-------ILRVGFVASEIV 441 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH-HHHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH-hhhhhcccccccHHHHHHH-------HHHHHHHHHHHH
Confidence 34688999999999999999999998863 5677654 4544322222221100000 000112223333
Q ss_pred HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCc-EEEEEEcCHHHHHHHHh
Q 029252 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRIL 142 (196)
Q Consensus 94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~-~~i~l~~~~~~~~~R~~ 142 (196)
. .+..+|+|+..........+.+ ....++ .+|||++|.+++.+|+.
T Consensus 442 ~--~G~~VI~d~~~~~~~~r~~~~~-~l~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 442 K--HNGVVICALVSPYRSARNQVRN-MMEEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp H--TTCEEEEECCCCCHHHHHHHHT-TSCTTCEEEEEEECCGGGHHHHCC
T ss_pred h--CCCEEEEEcCCCCHHHHHHHHH-HhhcCCEEEEEEeCCHHHHHHHhh
Confidence 3 4778999975544444444444 222256 79999999999999975
No 102
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.08 E-value=6.1e-10 Score=79.52 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLL 56 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~ 56 (196)
.++.+|.|.|++||||||+++.|+..++ ..+++.|..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 4567899999999999999999999888 7777766543
No 103
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=99.07 E-value=1.8e-09 Score=82.06 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
+++|+|.|+.||||||+++.|++.++.
T Consensus 7 ~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 7 IVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 578999999999999999999998853
No 104
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.06 E-value=4.1e-10 Score=80.37 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=72.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHH--HHHcCCcchHHHHHHHHcCCCCCHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRA--EIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (196)
..++.++.|.|++||||||+++.|+..+. ...+..|+.... .......... ...............+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~ 93 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPR-----KGAPETFDFEGFQRLCH 93 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGG-----TTSGGGBCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhccccc-----CCCCchhhHHHHHHHHH
Confidence 35678999999999999999999998874 344554432211 1000000000 00000111122223333
Q ss_pred HHHHh----------------------cC-CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--c
Q 029252 91 KAMEE----------------------SG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--N 145 (196)
Q Consensus 91 ~~l~~----------------------~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~ 145 (196)
..... .. ...+|+||.....++. .|.. ....+|.++|++++.+++.+|+.+| .
T Consensus 94 ~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~-~~~~-l~~~~d~~i~vd~~~~~~~~R~~~R~~~ 171 (208)
T 3c8u_A 94 ALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAP-GWRD-LTAIWDVSIRLEVPMADLEARLVQRWLD 171 (208)
T ss_dssp HHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCST-TGGG-GGGTCSEEEEECCCHHHHHHHHHHHHHH
T ss_pred HHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCc-hhHH-HHHhcCEEEEEeCCHHHHHHHHHHHHHh
Confidence 22111 01 2578889854322221 1111 1234689999999999999999988 2
Q ss_pred CCCCCCcHHHHHHHHH
Q 029252 146 QGREDDNVETIRKRFK 161 (196)
Q Consensus 146 ~~r~~~~~~~~~~~~~ 161 (196)
.++ +.+.+.+++.
T Consensus 172 ~g~---t~~~~~~~~~ 184 (208)
T 3c8u_A 172 HGL---NHDAAVARAQ 184 (208)
T ss_dssp TTC---CHHHHHHHHH
T ss_pred cCC---CHHHHHHHHH
Confidence 333 4556666554
No 105
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.04 E-value=5.8e-10 Score=84.44 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=30.5
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDL 55 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~ 55 (196)
...|.+|.|.|++||||||+++.|+..++ ..+++.|++
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 45678999999999999999999988774 345666654
No 106
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.03 E-value=3.9e-10 Score=79.11 Aligned_cols=135 Identities=18% Similarity=0.261 Sum_probs=49.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHH---cCC----cchHHHHHHHHcCCCCCH--------HH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIK---SGS----ENGTMIQNMIKEGKIVPS--------EV 84 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~--------~~ 84 (196)
+.+++|.||+||||||+++.|+..+.. ..+...+..+..-. .+. .....+..+...+....+ ..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 357899999999999999999976531 00000000000000 000 001222222222221110 00
Q ss_pred HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCH-HHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029252 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRFKVF 163 (196)
Q Consensus 85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-~~~~~R~~~R~~~r~~~~~~~~~~~~~~~ 163 (196)
....+...+. .+..+|+|.. ......+.. .......+||+.+|. +++.+|+.+| ++ ++++.+++|+...
T Consensus 81 ~~~~i~~~l~--~g~~~il~~~---~~g~~~l~~-~~~~~~~~i~i~~p~~~~l~~Rl~~R--g~--~~~~~i~~rl~~~ 150 (186)
T 3a00_A 81 TVASVKQVSK--SGKTCILDID---MQGVKSVKA-IPELNARFLFIAPPSVEDLKKRLEGR--GT--ETEESINKRLSAA 150 (186)
T ss_dssp EHHHHHHHHH--TTCEEEEECC---HHHHHHHHT-CGGGCCEEEEEECSCC-----------------------------
T ss_pred cHHHHHHHHH--cCCeEEEEEc---HHHHHHHHH-hcCCCeEEEEEECcCHHHHHHHHHhc--CC--CCHHHHHHHHHHH
Confidence 0234455554 4778888742 233333332 012223578888866 9999999988 33 3556677777665
Q ss_pred Hh
Q 029252 164 LE 165 (196)
Q Consensus 164 ~~ 165 (196)
..
T Consensus 151 ~~ 152 (186)
T 3a00_A 151 QA 152 (186)
T ss_dssp --
T ss_pred HH
Confidence 53
No 107
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.02 E-value=3.6e-09 Score=86.15 Aligned_cols=114 Identities=14% Similarity=0.111 Sum_probs=63.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcCCcchHHHHH-HHHcCCCCCHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTMIQN-MIKEGKIVPSEVTIKLLQ 90 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~------~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 90 (196)
..++.+|+|+|+|||||||+++.|+++++ +.+++.|. ++........+...-.. .+ ......+.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~-ir~~l~~~~~f~~~er~~~i--------~ri~~v~~ 463 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT-VRHELSSELGFTREDRHTNI--------QRIAFVAT 463 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH-HHHHTCTTCCCSHHHHHHHH--------HHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH-HHHHhccccCCChhHHHHHH--------HHHHHHHH
Confidence 34568999999999999999999999976 24555544 44432222111110000 00 00111222
Q ss_pred HHHHhcCCCeEEEeccCCCHHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHh
Q 029252 91 KAMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRIL 142 (196)
Q Consensus 91 ~~l~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~ 142 (196)
..+. .+..+|.+........+..+.++ .......+|||++|.+++.+|..
T Consensus 464 ~~~~--~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 464 ELTR--AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp HHHH--TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCS
T ss_pred HHHh--CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhc
Confidence 2222 36667777433333333333332 11124579999999999999953
No 108
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=99.00 E-value=6.9e-09 Score=73.07 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=73.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHc--CCcchHHH-----------------HHHHHcC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKS--GSENGTMI-----------------QNMIKEG 77 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~~--~~~~~~~~-----------------~~~~~~~ 77 (196)
++.+|+|+|.|||||+|+|+.+.+.++ +.+++++|.++..... +-.....+ ......+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d 89 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQAD 89 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcC
Confidence 457999999999999999999988885 6789999999964332 21211110 0001111
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 78 KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
..+ + +...+.......|||+|. +..++.+.|.+ ....-..+|.+.+++++..+|...+
T Consensus 90 ~~~----~---~~~~~~~~~~~~vII~dv-R~~~Ev~~fr~-~~g~~~~iirI~as~~~R~~Rg~~~ 147 (202)
T 3ch4_B 90 PGF----F---CRKIVEGISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVF 147 (202)
T ss_dssp TTT----T---HHHHSBTCCCSEEEECCC-CSHHHHHHHHH-HHGGGEEEEEEEECHHHHHHTTCCC
T ss_pred chH----H---HHHHHHhcCCCcEEEeCC-CCHHHHHHHHH-hCCCcEEEEEEECCHHHHHHHhhhc
Confidence 000 0 011111223457899986 66777788776 3332245899999999999996433
No 109
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.99 E-value=6.8e-09 Score=72.81 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=62.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHcCC--cchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGS--ENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
+.+++|.|++||||||+++.|+..++. .+++.+++.... ..+. +......... + ............. .
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~~~-----~-~~~l~~~~~~~~~--~ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRPPWESDELLAL-----T-WKNITDLTVNFLL--A 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCCGGGCHHHHHH-----H-HHHHHHHHHHHHH--T
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-ccccccCccchhHHHH-----H-HHHHHHHHHHHHh--c
Confidence 457999999999999999999987765 667776653321 1110 0000000000 0 0001111111222 3
Q ss_pred CCeEEEeccCCCHHHHHHHHhh---cCCC-CcEEEEEEcCHHHHHHHHhhc
Q 029252 98 NDKFLIDGFPRNEENRAAFEAV---TKIE-PEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~---~~~~-~~~~i~l~~~~~~~~~R~~~R 144 (196)
+..+|+|+.. .......+... .... ...+++|.++++++.+|...|
T Consensus 73 ~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r 122 (189)
T 2bdt_A 73 QNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR 122 (189)
T ss_dssp TCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTS
T ss_pred CCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhc
Confidence 5578899853 33332322221 1222 234788999999999999988
No 110
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.97 E-value=5e-09 Score=79.67 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCChHHHH-HHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQC-ANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla-~~L~~~~~~ 47 (196)
+++.|+|.|+.||||||++ +.|++.++.
T Consensus 11 ~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 11 GVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 4588999999999999999 999998864
No 111
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.93 E-value=2e-08 Score=75.84 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGD 54 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d 54 (196)
..+.+|.|.|++||||||+++.|+..++ ..++++|+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 4568999999999999999999998776 44555554
No 112
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.88 E-value=3.1e-10 Score=86.06 Aligned_cols=36 Identities=19% Similarity=0.526 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~ 55 (196)
++.+|+|.||+||||||++..|+++++..+++.|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 346899999999999999999999999999988665
No 113
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.87 E-value=1.5e-08 Score=75.56 Aligned_cols=148 Identities=10% Similarity=0.034 Sum_probs=83.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (196)
..+++|++.|..||||||.++.|.+.++- .++... .+...... ..+ ...+...+-
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~------~~y-----l~R~~~~LP- 141 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG------QWY-----FQRYVATFP- 141 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT------SCT-----THHHHTTCC-
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh------chH-----HHHHHHhcc-
Confidence 45899999999999999999999999853 333321 11111111 111 112222221
Q ss_pred cCCCeEEEeccCCC------------HH----HHHHHHh---h--cCCCCcEEEEEEcCHHHHHHHHhhc-c--CCCCCC
Q 029252 96 SGNDKFLIDGFPRN------------EE----NRAAFEA---V--TKIEPEFVLFFDCSEEEMERRILNR-N--QGREDD 151 (196)
Q Consensus 96 ~~~~~~iidg~~~~------------~~----~~~~~~~---~--~~~~~~~~i~l~~~~~~~~~R~~~R-~--~~r~~~ 151 (196)
..+..+|.|.+... .+ ....+.. . ....+++.|||++++++..+|+..| . ..+...
T Consensus 142 ~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~ 221 (304)
T 3czq_A 142 TAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKL 221 (304)
T ss_dssp CTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGGC
T ss_pred cCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcccccCC
Confidence 13888999974311 11 1111111 1 2457889999999999999999887 1 111123
Q ss_pred cHHHHHH--HHHHHHhcchhHHHHHH-hcCcEEEEeCCCC
Q 029252 152 NVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKVIFCSP 188 (196)
Q Consensus 152 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~ 188 (196)
+...+++ .+..|......++..-. ...++++|+++..
T Consensus 222 s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk 261 (304)
T 3czq_A 222 SPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDK 261 (304)
T ss_dssp CHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCc
Confidence 3333332 23444433333333222 2347999999864
No 114
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.84 E-value=1.9e-08 Score=76.25 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.+.|+|.|+.||||||+++.|++.++
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999998875
No 115
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.82 E-value=3.4e-08 Score=75.95 Aligned_cols=27 Identities=26% Similarity=0.227 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
++++|+|.|+.||||||+++.|++.++
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999998875
No 116
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.80 E-value=6e-07 Score=61.89 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=75.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (196)
..+.+++|.|++||||||+++.+.. +...++.|. ++..+....... .+.... .+.........+. .+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~-~~g~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~--~g 73 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDF-CRGLMSDDENDQ-TVTGAA-------FDVLHYIVSKRLQ--LG 73 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHH-HHHHHCSSTTCG-GGHHHH-------HHHHHHHHHHHHH--TT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHH-HHHHhcCcccch-hhHHHH-------HHHHHHHHHHHHh--CC
Confidence 3567899999999999999998542 445555543 444333221100 000000 0011112222222 36
Q ss_pred CeEEEeccCCCHHHHH---HHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhH
Q 029252 99 DKFLIDGFPRNEENRA---AFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV 170 (196)
Q Consensus 99 ~~~iidg~~~~~~~~~---~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 170 (196)
...++|..+....... .+.......| .+++||.|...+..|...| .....+.+.+.............+
T Consensus 74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p-~~lllDEPt~~Ld~~~~~R--~~~~~~~~vi~~~~~~l~~~l~~l 145 (171)
T 4gp7_A 74 KLTVVDATNVQESARKPLIEMAKDYHCFP-VAVVFNLPEKVCQERNKNR--TDRQVEEYVIRKHTQQMKKSIKGL 145 (171)
T ss_dssp CCEEEESCCCSHHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHSTTH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHcCCcE-EEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHhhhhhhhH
Confidence 6677887554443222 2222133334 5999999999999999988 334566666766555555444444
No 117
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.79 E-value=4.4e-09 Score=76.20 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=17.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHH-HHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIV-EHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~-~~~ 45 (196)
.++.+++|.||+||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356789999999999999999999 665
No 118
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.78 E-value=1.4e-08 Score=71.57 Aligned_cols=34 Identities=9% Similarity=0.245 Sum_probs=26.4
Q ss_pred hcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 13 ~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
...+++.++.+|+|.||+||||||+++.|.+.+.
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456667788999999999999999999998765
No 119
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.77 E-value=3.7e-08 Score=71.95 Aligned_cols=32 Identities=38% Similarity=0.635 Sum_probs=26.7
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~ 48 (196)
...++.+|.|.|++||||||+++.|+..+|..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34456899999999999999999999988754
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.75 E-value=2.4e-07 Score=66.55 Aligned_cols=135 Identities=18% Similarity=0.267 Sum_probs=73.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHH---HHcCC----cchHHHHHHHHcCCCCCH--------
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAE---IKSGS----ENGTMIQNMIKEGKIVPS-------- 82 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~--~~~~~~d~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~-------- 82 (196)
.+.+++|.||+||||||+++.|+..+.. ...+.....+.. ...+. .....+......+.+..+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y 94 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY 94 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence 4579999999999999999999987641 111110000000 00000 011222222221111000
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252 83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV 162 (196)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (196)
......+...+. .+..+|+| ........+.+ .......+++...+.+.+.+|+..| | .++.+.+..|+..
T Consensus 95 g~~~~~v~~~l~--~G~illLD---LD~~~~~~i~~-~l~~~~tI~i~th~~~~l~~Rl~~r--G--~~~~e~i~~rl~~ 164 (219)
T 1s96_A 95 GTSREAIEQVLA--TGVDVFLD---IDWQGAQQIRQ-KMPHARSIFILPPSKIELDRRLRGR--G--QDSEEVIAKRMAQ 164 (219)
T ss_dssp EEEHHHHHHHHT--TTCEEEEE---CCHHHHHHHHH-HCTTCEEEEEECSSHHHHHHHHHTT--S--CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHh--cCCeEEEE---ECHHHHHHHHH-HccCCEEEEEECCCHHHHHHHHHHc--C--CCCHHHHHHHHHH
Confidence 001233444554 37889999 55555555555 2323334555566789999999777 4 5677888888876
Q ss_pred HH
Q 029252 163 FL 164 (196)
Q Consensus 163 ~~ 164 (196)
..
T Consensus 165 a~ 166 (219)
T 1s96_A 165 AV 166 (219)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.70 E-value=5.9e-08 Score=67.98 Aligned_cols=116 Identities=22% Similarity=0.305 Sum_probs=63.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHH--HH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA--ME 94 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~ 94 (196)
.++.+++|.|+|||||||+++.|+..++. .+++.+++.... ......+...+.. . +.......+... ..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~-~-----~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDPWLPQSH-Q-----QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCTTSSSHH-H-----HHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccCCccchh-h-----hhHHHHHHHHHHHHHH
Confidence 45678999999999999999999987643 367766654321 1100000000000 0 011111111111 11
Q ss_pred hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252 95 ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (196)
Q Consensus 95 ~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 144 (196)
...+..+++|+..... ....+.. .. .....+++.++.+++..|...|
T Consensus 80 ~~~~~~~~~~~~~~~~-~l~~~~~-~~-~~~~~ls~~~~~~v~~~R~~~r 126 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPD-WLPAFTA-LA-RPLHYIVLRTTAAEAIERCLDR 126 (191)
T ss_dssp HHTSCEEEECSCCCTT-TTHHHHT-TC-SCEEEEEEECCHHHHHHHHHTT
T ss_pred hccCCeEEEeccCcHH-HHHHHHh-cC-CCeEEEEecCCHHHHHHHHHhc
Confidence 1135567888754321 2222222 12 2235899999999999999988
No 122
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.64 E-value=6.5e-07 Score=67.65 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
...+.++.|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4567899999999999999999999866
No 123
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.62 E-value=4.1e-07 Score=64.29 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+..++|.||+||||||+++.|...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999998765
No 124
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.60 E-value=1.6e-08 Score=76.35 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~ 55 (196)
++.+|+|.||+||||||+++.|+++++..+++.|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 567899999999999999999999999988888664
No 125
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.53 E-value=2.5e-07 Score=75.01 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=50.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcCCcchHH-HHHHHHcCCCCCHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTM-IQNMIKEGKIVPSEVTIKLLQK 91 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~------~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 91 (196)
.++.+|+|.|++||||||+++.|+..++ +.+++.|++... ......+... ...... . ...+..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~~~r~~~~r--------~-i~~v~q 436 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSKAHRDVNVR--------R-IGFVAS 436 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSHHHHHHHHH--------H-HHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCHHHHHHHHH--------H-HHHHHH
Confidence 3568999999999999999999999884 334676665432 1111111110 000000 0 111111
Q ss_pred HHHhcCCCeEEEeccCCCHHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHh
Q 029252 92 AMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRIL 142 (196)
Q Consensus 92 ~l~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~ 142 (196)
.+.. .+..++..+............++ .......+|||++|.+++.+|..
T Consensus 437 ~l~~-~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 437 EITK-NRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR 487 (552)
T ss_dssp HHHH-TTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC----------
T ss_pred HHHh-cCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc
Confidence 1221 24555554432112222222221 11123469999999999999964
No 126
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.52 E-value=3.1e-08 Score=75.32 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=32.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~ 55 (196)
++.+|+|.||+||||||+++.|++.++..+++.|++
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 346899999999999999999999999888988776
No 127
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.48 E-value=7.9e-08 Score=72.02 Aligned_cols=37 Identities=19% Similarity=0.357 Sum_probs=32.4
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d 54 (196)
..++.+|+|.||+||||||++..|+++++..+++.|.
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 3457899999999999999999999999988887654
No 128
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.45 E-value=6.4e-07 Score=71.56 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=76.6
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (196)
...+++|++.|..||||+|..+.|.+.++- .++... .+..... +..+ .......+
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~----------~Pt~~E~------~~~y-----l~R~~~~l- 97 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFL----------RPSDEEL------ERPP-----QWRFWRRL- 97 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECS----------SCCHHHH------TSCT-----THHHHHHC-
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhc------cCCh-----hhhHHHhC-
Confidence 356899999999999999999999999963 233221 1111111 0111 11111111
Q ss_pred hcCCCeEEEeccC------------CCHH-------HHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc-c--CCCCC
Q 029252 95 ESGNDKFLIDGFP------------RNEE-------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-N--QGRED 150 (196)
Q Consensus 95 ~~~~~~~iidg~~------------~~~~-------~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R-~--~~r~~ 150 (196)
-..+..+|.|++. ...+ +...|+.. ....+++.|||+++.++..+|+..| . ..+-.
T Consensus 98 P~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk 177 (500)
T 3czp_A 98 PPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSWK 177 (500)
T ss_dssp CCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC------------
T ss_pred CCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCC
Confidence 1137788888642 1111 11112111 5666788999999999999999998 1 11000
Q ss_pred CcHHHH--HHHHHHHHhcchhHHHHHH-hcCcEEEEeCCC
Q 029252 151 DNVETI--RKRFKVFLESSLPVVQYYE-AKGKVRKVIFCS 187 (196)
Q Consensus 151 ~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 187 (196)
.+...+ .+++..|......++..-. ...++++|+++.
T Consensus 178 ~s~~D~~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~d 217 (500)
T 3czp_A 178 LSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGAD 217 (500)
T ss_dssp -CSSCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSC
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCC
Confidence 111111 1223334333333433222 223799999986
No 129
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.44 E-value=9.7e-08 Score=71.65 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~ 55 (196)
++++|+|.||+||||||++..|+++++..+++.|..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 457899999999999999999999999888877654
No 130
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.39 E-value=6.9e-07 Score=71.36 Aligned_cols=147 Identities=10% Similarity=0.082 Sum_probs=81.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (196)
..+++|++.|..||||+|..+.|.+.++ +.++... .+..... +.... ......+ -
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~~~yl-----~R~~~~l-P 355 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------AQPYL-----WRFWRHI-P 355 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------TSCTT-----HHHHTTC-C
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------cchHH-----HHHHHhC-C
Confidence 4679999999999999999999999885 3333321 1111111 11111 1111111 1
Q ss_pred cCCCeEEEeccCCC------------HHHHH-HHHhh--------cCCCCcEEEEEEcCHHHHHHHHhhc-c--CCCCCC
Q 029252 96 SGNDKFLIDGFPRN------------EENRA-AFEAV--------TKIEPEFVLFFDCSEEEMERRILNR-N--QGREDD 151 (196)
Q Consensus 96 ~~~~~~iidg~~~~------------~~~~~-~~~~~--------~~~~~~~~i~l~~~~~~~~~R~~~R-~--~~r~~~ 151 (196)
..+..+|.|++... .++.. .+.++ ....+.+.|||+++.++..+|+..| . ..+-..
T Consensus 356 ~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~Wk~ 435 (500)
T 3czp_A 356 ARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRYKI 435 (500)
T ss_dssp CTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTSCC
T ss_pred CCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCC
Confidence 13888999974321 11111 11111 4555778999999999999999999 2 221112
Q ss_pred cHHHHH--HHHHHHHhcchhHHHHHH-hcCcEEEEeCCC
Q 029252 152 NVETIR--KRFKVFLESSLPVVQYYE-AKGKVRKVIFCS 187 (196)
Q Consensus 152 ~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 187 (196)
+...++ +....|.......+..-. ...++++|+++.
T Consensus 436 s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~d 474 (500)
T 3czp_A 436 TEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEAND 474 (500)
T ss_dssp CSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCC
Confidence 211222 223334433334443333 233799999886
No 131
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=98.39 E-value=4.1e-06 Score=61.76 Aligned_cols=144 Identities=10% Similarity=0.089 Sum_probs=82.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (196)
.+.+|++.|..||||+++.+.|.+.++- .+.... .+.... ..... +.+.....
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~----------~Pt~eE------~~~~y--------lwR~~~~l 129 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFK----------APTDEE------KSHDF--------LWRIEKQV 129 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECC----------SCCHHH------HTSCT--------THHHHTTC
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECC----------CCChhh------hcCCH--------HHHHHHhC
Confidence 5789999999999999999999999963 333221 111110 01111 11122222
Q ss_pred --CCCeEEEeccCCC------------HH-------HHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc---cCCCCC
Q 029252 97 --GNDKFLIDGFPRN------------EE-------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR---NQGRED 150 (196)
Q Consensus 97 --~~~~~iidg~~~~------------~~-------~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r~~ 150 (196)
.+..+|+|++... .+ +...|+.. ......+-+||.++.++..+|+.+| ...+-.
T Consensus 130 P~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK 209 (289)
T 3rhf_A 130 PAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWK 209 (289)
T ss_dssp CCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGG
T ss_pred CCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCccccc
Confidence 3888899964311 11 11122221 4445556899999999999999998 222233
Q ss_pred CcHHHHHHH--HHHHHhcchhHHHHHH-hcCcEEEEeCCC
Q 029252 151 DNVETIRKR--FKVFLESSLPVVQYYE-AKGKVRKVIFCS 187 (196)
Q Consensus 151 ~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 187 (196)
.+...+.++ ...|......++..-. ...++++|+++.
T Consensus 210 ~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~add 249 (289)
T 3rhf_A 210 YSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANK 249 (289)
T ss_dssp CCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCC
Confidence 444444442 3444443333433322 234799999875
No 132
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.32 E-value=4.1e-07 Score=63.25 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.++.+++|.|||||||||+++.|+..+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3557899999999999999999998763
No 133
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=5.5e-07 Score=70.69 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=30.8
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
.....|.-|++.||||||||++|+.+|..++..++.
T Consensus 201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 345567889999999999999999999999876654
No 134
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=7e-07 Score=70.24 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=30.9
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
.....|.-|+|+||||||||++|+.+|..++..++.
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 345567899999999999999999999999976654
No 135
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=6.6e-07 Score=70.32 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=30.7
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
.....|..|++.||||||||++|+.+|..++..++.
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 344567889999999999999999999999976654
No 136
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=6.1e-07 Score=69.69 Aligned_cols=36 Identities=22% Similarity=0.475 Sum_probs=30.7
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
.....|.-+++.||||+|||++|+.+|..++..++.
T Consensus 177 ~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 177 LGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp HTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 345567789999999999999999999999976654
No 137
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.26 E-value=9.4e-07 Score=64.19 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK 61 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~ 61 (196)
++|.|+|++||||||+++.|.+++|+.++..++.+++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 5799999999999999999998899999998887776543
No 138
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.26 E-value=4.9e-07 Score=70.14 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d 54 (196)
+++|+|.||+||||||++..|+++++..+++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4689999999999999999999999988888755
No 139
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.25 E-value=9e-07 Score=66.33 Aligned_cols=38 Identities=37% Similarity=0.730 Sum_probs=30.4
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDL 55 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~--~~~~~d~ 55 (196)
...|..++|.||||+|||++|+.+++.++.. .++..++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 3456789999999999999999999999854 4455444
No 140
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.2e-06 Score=69.03 Aligned_cols=36 Identities=19% Similarity=0.424 Sum_probs=31.0
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
..-..|.-|+|.||||+|||++|+.+|..++..++.
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 445567899999999999999999999999976654
No 141
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.5e-06 Score=67.89 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=30.9
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
.....|.-|++.||||+|||++|+.+|..++..++.
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 444567889999999999999999999999976654
No 142
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.14 E-value=1.9e-06 Score=64.38 Aligned_cols=40 Identities=30% Similarity=0.383 Sum_probs=31.3
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEe-cHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHL-SAGDLL 56 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~-~~~d~~ 56 (196)
...++.+|.|.|++||||||+++.|+..++ ...+ +.|+++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 345678999999999999999999998774 3345 666654
No 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.12 E-value=3.3e-06 Score=58.48 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh----C--CcEecHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRA 58 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~----~--~~~~~~~d~~~~ 58 (196)
..+..++|.|++||||||+++.++..+ + ..+++..++...
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 346789999999999999999999876 3 345666665544
No 144
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.10 E-value=1.6e-06 Score=69.59 Aligned_cols=36 Identities=6% Similarity=0.039 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCC-------cEecHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-------THLSAGD 54 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~-------~~~~~~d 54 (196)
..+.+|+|.|+|||||||+++.|+++|+. .+++.|+
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 35689999999999999999999999985 4666544
No 145
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.07 E-value=4.1e-06 Score=61.36 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
..+..++|.|+||+||||+++.+++.++..++
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34567999999999999999999999986544
No 146
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.06 E-value=4.4e-06 Score=61.19 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.+..++|.|+|||||||+++.++..++..++
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence 3456999999999999999999999875443
No 147
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=98.05 E-value=2e-06 Score=60.29 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~ 52 (196)
.+..|+|.|+|||||||+|..|+++.+ .+++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 457799999999999999999998876 55554
No 148
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.04 E-value=1.4e-05 Score=59.82 Aligned_cols=129 Identities=16% Similarity=0.223 Sum_probs=72.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHc---CC----c-chHHHHHHHHcCCCCCHH------
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKS---GS----E-NGTMIQNMIKEGKIVPSE------ 83 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~---~~----~-~~~~~~~~~~~~~~~~~~------ 83 (196)
..+..|+|.|| ||+|+.+.|.+.+. ...++.....|..-.+ +. - ..+.+..++..|.++.+.
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~ 179 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL 179 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcE
Confidence 45678899998 79999999998764 2223322222221111 00 0 234556666666554321
Q ss_pred --HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC-HHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029252 84 --VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRF 160 (196)
Q Consensus 84 --~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~r~~~~~~~~~~~~ 160 (196)
+....+...+. .++.+|+|..+... ..+.. ....| ++||+..| .+++.+ +..| + +.+.+++|+
T Consensus 180 YGt~~~~V~~~~~--~G~~vildid~~g~---~~l~~-~~~~p-i~IfI~pps~~~L~~-L~~R--~----t~~~i~~rl 245 (295)
T 1kjw_A 180 YGTSVQSVREVAE--QGKHCILDVSANAV---RRLQA-AHLHP-IAIFIRPRSLENVLE-INKR--I----TEEQARKAF 245 (295)
T ss_dssp EEEEHHHHHHHHH--TTCEEEECCCTTHH---HHHHH-TTCCC-EEEEECCSSHHHHHH-HCTT--S----CHHHHHHHH
T ss_pred eeeeHHHHHHHHh--cCCeEEEEeCHHHH---HHHHh-cccCC-eEEEEECCCHHHHHH-HHhc--C----CHHHHHHHH
Confidence 12455666665 48889998654332 22332 33344 78888877 455554 7666 2 235577777
Q ss_pred HHHH
Q 029252 161 KVFL 164 (196)
Q Consensus 161 ~~~~ 164 (196)
....
T Consensus 246 ~~a~ 249 (295)
T 1kjw_A 246 DRAT 249 (295)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 149
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.03 E-value=3.5e-06 Score=58.44 Aligned_cols=26 Identities=38% Similarity=0.650 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
+.++|.|++||||||+++.|+..++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999988763
No 150
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.03 E-value=4.7e-06 Score=61.94 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
..+..++|.|+||+||||+++.+++.++..++
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 45577999999999999999999999986544
No 151
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.02 E-value=4.8e-06 Score=62.57 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAE 59 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~--~~~~d~~~~~ 59 (196)
..+..++|.|+|||||||+|+.+++.++..+ ++..++....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 4567899999999999999999999987544 4555665544
No 152
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.99 E-value=6e-06 Score=61.74 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.+..++|.|+||+||||+++.+++.++..++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 3578999999999999999999999885544
No 153
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.97 E-value=5.6e-06 Score=58.35 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
...+++.||||+||||+|..|++.+...++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 467999999999999999999998865444
No 154
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.97 E-value=1.3e-06 Score=66.80 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=28.2
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
........|+|.|+|||||||+++.|++.++..+
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3444456799999999999999999999988665
No 155
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.97 E-value=7.5e-06 Score=62.09 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDL 55 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~ 55 (196)
.+..++|.|+||+|||++|+.+++.++..++ +..++
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 3567999999999999999999999986544 44444
No 156
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.95 E-value=9.7e-06 Score=60.13 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
+.-++|.|||||||||+++.++..++...
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 34499999999999999999999887533
No 157
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.94 E-value=8.3e-06 Score=60.26 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=27.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
...+..++|.|+||+|||++|+.+++.++..++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 344578999999999999999999999886554
No 158
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.94 E-value=4.7e-06 Score=65.67 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~ 52 (196)
.+..|+|.||||+||||+++.|++.++..++..
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v 81 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence 346699999999999999999999998766543
No 159
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.93 E-value=5.3e-06 Score=59.40 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|.||+||||||+++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456789999999999999999998865
No 160
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.92 E-value=3e-05 Score=65.45 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=31.8
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLL 56 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~ 56 (196)
....+.-+++.||||+|||.+|+.++..++..++. ..+++
T Consensus 507 g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred CCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 34456779999999999999999999999876654 44444
No 161
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.92 E-value=5.9e-06 Score=63.69 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.+..++|.||||+|||++|+.+++.++..++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~ 80 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFT 80 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3456899999999999999999999986554
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.92 E-value=9.4e-06 Score=56.17 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+..++|.|+||+||||+++.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999999986
No 163
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.91 E-value=9.7e-06 Score=61.53 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh-CCcE
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTH 49 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~ 49 (196)
.+..++|.||||+|||++|+.+++.+ +..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 45789999999999999999999988 5443
No 164
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.91 E-value=7.7e-06 Score=58.01 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.-.++.+++|.|++||||||+++.|+..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 334567999999999999999999987664
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.90 E-value=1.2e-05 Score=62.24 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
....+.+++|.|||||||||+++.|+..++..++.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 34456799999999999999999999988765554
No 166
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.89 E-value=6.9e-06 Score=69.21 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=30.3
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
.....|.-|+|.||||+|||++|+.+++.++..++.
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~ 268 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 344567889999999999999999999999866553
No 167
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.88 E-value=2e-05 Score=55.49 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRA 58 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~ 58 (196)
..++|.|++|+||||+++.++..+ + ..+++..++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 789999999999999999999877 2 334566555444
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.87 E-value=1.1e-05 Score=61.52 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~ 48 (196)
+..++|.||||+||||+++.++..++..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3568999999999999999999998643
No 169
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.87 E-value=1.2e-05 Score=55.19 Aligned_cols=25 Identities=32% Similarity=0.166 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..++.|.|++||||||++..|...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999999876
No 170
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.86 E-value=1.2e-05 Score=61.82 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDL 55 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~ 55 (196)
.+..++|.|+||+|||++|+.+++.++..++ +..++
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3456899999999999999999999986554 44443
No 171
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.86 E-value=1.7e-05 Score=57.91 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~ 48 (196)
+..++|.|+|||||||+++.++..++..
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~ 76 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEARVP 76 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3449999999999999999999987643
No 172
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.86 E-value=1.2e-05 Score=60.34 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+..++|.|+||+|||++|+.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999887
No 173
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.85 E-value=1.4e-05 Score=59.93 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.+..++|.|+||+|||++++.+++.++..++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3456899999999999999999999975443
No 174
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.85 E-value=9.8e-06 Score=55.89 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+..++|.|+||+||||+++.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999999987
No 175
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.82 E-value=1.7e-05 Score=54.77 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+..+++|.|++||||||+++.|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998865
No 176
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.82 E-value=1.2e-05 Score=54.01 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
....++|.|++||||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 55789999999999999999999876
No 177
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.82 E-value=1.7e-05 Score=61.05 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.+..++|.|+||+|||++|+.+++.++..++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4578999999999999999999999986544
No 178
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.82 E-value=5.6e-06 Score=60.96 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
+..++|.|+||+|||++|+.+++.++..++
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 345889999999999999999999875544
No 179
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.82 E-value=1.6e-05 Score=53.99 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456789999999999999999999876
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.81 E-value=1.6e-05 Score=57.26 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.+..++|.|+||+||||+++.+++.+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998763
No 181
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.80 E-value=1.2e-05 Score=62.24 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
+..++|.|+||+||||+|+.+++.++..++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456899999999999999999999975544
No 182
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.79 E-value=2.4e-05 Score=62.31 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
.|.-++|.||||+||||+++.++...+.+++.
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 45669999999999999999999999866543
No 183
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.78 E-value=2e-05 Score=59.31 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++.+++|.|++||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56799999999999999999999766
No 184
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.76 E-value=2e-05 Score=59.17 Aligned_cols=33 Identities=21% Similarity=0.524 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
.-+++.+++|.|++||||||+++.|+.-+.-.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 345668999999999999999999998764333
No 185
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.75 E-value=2.9e-05 Score=61.69 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.+..+++.||||+|||++|+.+++.++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 346799999999999999999999997
No 186
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.75 E-value=3.3e-05 Score=57.26 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYT 48 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~ 48 (196)
.-++|.|+|||||||+++.++..++..
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~~~ 100 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEARVP 100 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CeEEEECCCcChHHHHHHHHHHHcCCC
Confidence 449999999999999999999987643
No 187
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.75 E-value=2.3e-05 Score=57.66 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+..+++|.||+||||||+++.++..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3455789999999999999999998754
No 188
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.74 E-value=2.5e-05 Score=59.32 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|.|++||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999766
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.74 E-value=3.7e-05 Score=58.22 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLR 57 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~ 57 (196)
.+..++|.|+||+||||+++.+++.+ + +.+++..++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~ 78 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence 34679999999999999999999977 4 45566666543
No 190
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.74 E-value=1.5e-05 Score=55.02 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=21.3
Q ss_pred CCccccCchhhhhcccCCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
||-++..+....+......+...|+|.|.+|+||||+.+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp --------------------CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCcccccccccCCccCCCCceeEEEEECCCCCCHHHHHHHHhc
Confidence 3443333333333344445567899999999999999999975
No 191
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.73 E-value=1.7e-05 Score=57.45 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.-..+-+++|.|++||||||+.+.|+.-+
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34456899999999999999999998644
No 192
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.72 E-value=9.2e-06 Score=55.92 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.|+|++||||||+++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998866
No 193
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.72 E-value=2.9e-05 Score=59.11 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
+..++|.|+||+|||++|+.+++.++..++
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 345899999999999999999999876544
No 194
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.72 E-value=3.1e-05 Score=62.48 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.+..++|.|+||+||||+|+.+++.++..++
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3468999999999999999999999986654
No 195
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.71 E-value=2.3e-05 Score=56.90 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~ 42 (196)
.++.+++|.|++||||||+++.++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 456899999999999999999988
No 196
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.71 E-value=3.4e-05 Score=58.01 Aligned_cols=27 Identities=30% Similarity=0.662 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|.|++||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999865
No 197
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.71 E-value=3.3e-05 Score=60.08 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.+..++|.|+||+|||++|+.+++.++..++
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 3568999999999999999999999986554
No 198
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.70 E-value=2.9e-05 Score=55.69 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
+..++|.|++|+||||+++.+++.++
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999998874
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.68 E-value=3.3e-05 Score=61.22 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh-CCcE--ecHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTH--LSAGDLLRA 58 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~--~~~~d~~~~ 58 (196)
.+..++|.||||+|||++|+.+++.+ +..+ ++..++...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 45789999999999999999999998 5443 455455443
No 200
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.68 E-value=2.8e-05 Score=54.39 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+++|.|++||||||+++.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999999876
No 201
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.68 E-value=3.8e-05 Score=57.79 Aligned_cols=27 Identities=37% Similarity=0.787 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+|+|+|++||||||++..|+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 456899999999999999999999876
No 202
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.68 E-value=2.2e-05 Score=56.48 Aligned_cols=27 Identities=33% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+++.++.-+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998644
No 203
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.68 E-value=2.5e-05 Score=55.95 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
....++.|.|++||||||+++.++..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998743
No 204
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.67 E-value=1.7e-05 Score=59.91 Aligned_cols=31 Identities=6% Similarity=0.225 Sum_probs=27.1
Q ss_pred ccCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 15 ~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
......+..++|.|+||+|||++++.+++.+
T Consensus 39 ~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 39 SLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445677899999999999999999999988
No 205
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.67 E-value=2.7e-05 Score=55.13 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++|.|++|+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999876
No 206
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.66 E-value=2.5e-05 Score=56.65 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.+++|.|++||||||+++.|+.-+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999999998643
No 207
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.65 E-value=3e-05 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.-|+|.|+||+|||++|+.+++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 448999999999999999998764
No 208
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.65 E-value=6.1e-05 Score=56.20 Aligned_cols=129 Identities=9% Similarity=0.136 Sum_probs=69.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHcCCc---------chHHHHHHHHcCCCCCHH----
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSE---------NGTMIQNMIKEGKIVPSE---- 83 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---- 83 (196)
+..+..|+|.|| ||+|+.+.|.+.+.. ..++.....|.. +.++. ..+.+...+..+.++.+.
T Consensus 97 ~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~p-R~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~g 172 (292)
T 3tvt_A 97 INYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPK-REYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYND 172 (292)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCC-CTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCC-cCCccCCccccccCCHHHHHHHHhcCceEEEEEEcc
Confidence 345567888888 599999999988753 222222222221 11111 123455555555543321
Q ss_pred ----HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC-HHHHHHHHhhccCCCCCCcHHHHHH
Q 029252 84 ----VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRK 158 (196)
Q Consensus 84 ----~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~r~~~~~~~~~~ 158 (196)
+....+.+.+. .++.+|+|-- .+....+.. ....| ++||+..| .+++.+|+..| ..+..+.+.+
T Consensus 173 n~YGT~~~~V~~~~~--~gk~viLdid---~qg~~~lk~-~~~~p-i~IFI~PpS~e~L~~r~~~r----~~e~~~~~~~ 241 (292)
T 3tvt_A 173 NLYGTSVASVREVAE--KGKHCILDVS---GNAIKRLQV-AQLYP-VAVFIKPKSVDSVMEMNRRM----TEEQAKKTYE 241 (292)
T ss_dssp EEEEEEHHHHHHHHH--HTCEEEECCC---THHHHHHHH-TTCCC-EEEEECCSCHHHHHHTCTTS----CTTHHHHHHH
T ss_pred ceeEEehHHHHHHHH--cCCcEEEecc---chhhhhccc-ccccc-eEEEEECCCHHHHHHHHhCC----CchhHHHHHH
Confidence 11455666665 3788898843 344444444 44445 56777665 56666555433 4455555555
Q ss_pred HHH
Q 029252 159 RFK 161 (196)
Q Consensus 159 ~~~ 161 (196)
|+.
T Consensus 242 r~~ 244 (292)
T 3tvt_A 242 RAI 244 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 209
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.64 E-value=4.3e-05 Score=58.76 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
+..++|.|+||+|||++|+.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999999863
No 210
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.64 E-value=3.1e-05 Score=56.26 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.. -+++|.|++||||||+.+.++.-+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 789999999999999999998643
No 211
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.64 E-value=4.4e-05 Score=57.30 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..++|.|+||+||||+|+.+++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 212
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.64 E-value=2.8e-05 Score=54.01 Aligned_cols=31 Identities=23% Similarity=0.081 Sum_probs=22.5
Q ss_pred hcccCCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 13 ~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
+......+...|+|.|.+|+||||+.+.+..
T Consensus 14 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp -----CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccCCCCccEEEEECCCCCCHHHHHHHHHc
Confidence 3333344457899999999999999999975
No 213
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.63 E-value=4.8e-05 Score=58.45 Aligned_cols=27 Identities=30% Similarity=0.662 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|.|++||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 457899999999999999999999866
No 214
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.63 E-value=2.4e-05 Score=54.14 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
+++|.|++||||||+|..|+.. +.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~ 24 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-AP 24 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CS
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CC
Confidence 3789999999999999999977 63
No 215
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.63 E-value=3e-05 Score=57.10 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+-+++|.|++||||||+.+.|+.-+
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999999998644
No 216
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.62 E-value=2.6e-05 Score=54.18 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=21.6
Q ss_pred CCccccCchhhhhcccCCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
||-+..++.+..+......+...|+|.|.+|+||||+.+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 1 MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp --------------------CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCccccccccccCcccCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34433333333334444456678999999999999999998754
No 217
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.62 E-value=3.2e-05 Score=56.27 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.+++|.|++||||||+.+.|+.-+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999999998643
No 218
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.61 E-value=3.1e-05 Score=57.43 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++-+++|.|++||||||+++.|+.-+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456789999999999999999998644
No 219
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.61 E-value=3.5e-05 Score=61.05 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
...++|.|+||+||||+++.+++.++..++
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~ 79 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANADVE 79 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 356999999999999999999999876544
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.61 E-value=4.8e-05 Score=54.46 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|.|++||||||+++.++..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998654
No 221
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.61 E-value=3.3e-05 Score=57.02 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+-++.|.|++||||||+++.|+.-+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356789999999999999999998643
No 222
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.60 E-value=3.4e-05 Score=56.78 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+++.|+.-+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 456789999999999999999998644
No 223
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.60 E-value=3.3e-05 Score=54.89 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.+.+++|.|++||||||+++.++.-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999854
No 224
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.60 E-value=4.4e-05 Score=54.22 Aligned_cols=29 Identities=24% Similarity=0.111 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
-.++.+++|.|+|||||||+++.++..-+
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 45 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSG 45 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567999999999999999999987333
No 225
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.60 E-value=3.3e-05 Score=56.36 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+++.|+.-+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999997654
No 226
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.59 E-value=4.3e-05 Score=55.86 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
..+.+++|.|++||||||+.+.|+.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999864
No 227
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.59 E-value=3.6e-05 Score=56.92 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+++.|+.-+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998644
No 228
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.59 E-value=3.7e-05 Score=56.55 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+.+++|.|++||||||+++.|+.-+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3456789999999999999999998643
No 229
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.59 E-value=4.7e-05 Score=56.20 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
..+-+++|.|++||||||+++.|+.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999864
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.58 E-value=6.1e-05 Score=60.05 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..++.+++|.|++||||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3467899999999999999999999765
No 231
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.58 E-value=3.1e-05 Score=55.25 Aligned_cols=27 Identities=33% Similarity=0.310 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+++.|+.-+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355789999999999999999998644
No 232
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.58 E-value=5.9e-05 Score=60.41 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDL 55 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~ 55 (196)
..+..++|.|+||+|||++|+.+++.++..++ +..++
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l 274 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHh
Confidence 44567999999999999999999999885544 44444
No 233
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.58 E-value=3.7e-05 Score=55.45 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+.+.|+.-+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998644
No 234
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.58 E-value=3.9e-05 Score=56.28 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+-+++|.|++||||||+.+.|+.-+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999999998644
No 235
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.58 E-value=6.1e-05 Score=58.02 Aligned_cols=27 Identities=22% Similarity=0.472 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+..++|.|+||+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999877
No 236
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.58 E-value=0.0013 Score=55.31 Aligned_cols=130 Identities=16% Similarity=0.234 Sum_probs=74.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHc---CCc-----chHHHHHHHHcCCCCCHH-----
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKS---GSE-----NGTMIQNMIKEGKIVPSE----- 83 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~----- 83 (196)
..++..|+|.|| ||+|+.+.|.+.+. ...++.....|..-.+ +.. ..+.+...+..+.++.+.
T Consensus 528 ~~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~ 604 (721)
T 2xkx_A 528 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSH 604 (721)
T ss_pred CCCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCc
Confidence 345678999999 39999999998774 2334444444432111 110 245566666666655321
Q ss_pred ---HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029252 84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF 160 (196)
Q Consensus 84 ---~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~ 160 (196)
+....+...+. .++.+|+|.. ......+.. ....| ++||+..|....++++..| + +.+.+++|+
T Consensus 605 ~YGt~~~~v~~~~~--~g~~~ildi~---~~~~~~l~~-~~~~p-~~ifi~pps~~~L~~l~~R--~----t~~~~~~rl 671 (721)
T 2xkx_A 605 LYGTSVQSVREVAE--QGKHCILDVS---ANAVRRLQA-AHLHP-IAIFIRPRSLENVLEINKR--I----TEEQARKAF 671 (721)
T ss_pred cceeeHHHHHHHHH--CCCcEEEeCC---HHHHHHHHh-cccCC-EEEEEeCCcHHHHHHHhcc--C----CHHHHHHHH
Confidence 22555666665 4888899853 233333332 23334 7888887754444457766 2 234567777
Q ss_pred HHH
Q 029252 161 KVF 163 (196)
Q Consensus 161 ~~~ 163 (196)
...
T Consensus 672 ~~a 674 (721)
T 2xkx_A 672 DRA 674 (721)
T ss_pred HHH
Confidence 665
No 237
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.58 E-value=3.6e-05 Score=55.88 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+-+++|.|++||||||+.+.|+.-+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998644
No 238
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.57 E-value=3.7e-05 Score=56.43 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+.+.|+.-+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998644
No 239
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.56 E-value=7.3e-05 Score=57.71 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+..++|.|+||+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999999876
No 240
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.56 E-value=8e-05 Score=59.73 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
+.-++|.|+|||||||+++.++...+..++
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 455999999999999999999998865443
No 241
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.56 E-value=5.1e-05 Score=51.93 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~ 52 (196)
...-++|.|+||+||||+|..|.++ |+..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lvaD 46 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLVCD 46 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEES
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecC
Confidence 3467999999999999999999875 6555543
No 242
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.56 E-value=6.3e-05 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+++++|++||||||++..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999997777654
No 243
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.56 E-value=6.5e-05 Score=61.01 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
++..++|.|||||||||+++.++..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 467899999999999999999999887443
No 244
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.56 E-value=4.8e-05 Score=57.39 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
+..++|.|+||+||||+|+.+++.++..+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~ 66 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNL 66 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 35689999999999999999999887544
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.56 E-value=7e-05 Score=63.58 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=28.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
-..+..++|.|+|||||||+++.++..++..++
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i 267 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEE
Confidence 345678999999999999999999998876544
No 246
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.55 E-value=6.1e-05 Score=56.95 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
..+..+++.|+||+||||+++.+++.++..++
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~ 77 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMM 77 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence 34567888899999999999999999975554
No 247
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.54 E-value=4.5e-05 Score=55.72 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+-+++|.|++||||||+.+.|+.-+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355789999999999999999997543
No 248
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.53 E-value=4.8e-05 Score=56.14 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.-..+-+++|.|++||||||+.+.|+.-+
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33456789999999999999999998643
No 249
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.53 E-value=7.6e-05 Score=57.42 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999999877
No 250
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.53 E-value=5e-05 Score=52.97 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...++|.|++||||||+.+.++..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 367999999999999999999864
No 251
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.53 E-value=4.5e-05 Score=53.04 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
....|+|.|.+|+||||+.+.+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999999753
No 252
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.52 E-value=8e-05 Score=54.70 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
++...++|.||||+|||++++.|+..+.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3356899999999999999999998654
No 253
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.52 E-value=5.7e-05 Score=57.99 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=23.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
-...-++.|.||+||||||+.+.++--
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 345678999999999999999999863
No 254
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.52 E-value=7.1e-05 Score=56.07 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++.+++|.|++||||||++..|+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998755
No 255
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.52 E-value=4.9e-05 Score=56.47 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+-+++|.|++||||||+.+.|+.-+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356789999999999999999998644
No 256
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.51 E-value=5.2e-05 Score=55.52 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+.+.++.-+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998643
No 257
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.50 E-value=7.4e-05 Score=57.80 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|+|++||||||+++.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345789999999999999999998765
No 258
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.50 E-value=5.8e-05 Score=52.95 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=22.5
Q ss_pred hhhcccCCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 11 EADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 11 ~~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...+.++..+...|+|.|.+|+||||+.++|...
T Consensus 14 ~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 14 LYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ---------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3444555556678999999999999999999863
No 259
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.50 E-value=6.8e-05 Score=57.60 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
-..+-++.|.||+||||||+.+.++--
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 345678999999999999999999863
No 260
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.50 E-value=4.6e-05 Score=57.86 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
.-++|.|+||+|||++++.+++.++..+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3589999999999999999999887543
No 261
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.50 E-value=7e-05 Score=57.93 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-...-++.|.||+||||||+.+.|+--+
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3456789999999999999999998633
No 262
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.49 E-value=7.2e-05 Score=53.96 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.++.++.|.|+|||||||+++.++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35679999999999999999999874
No 263
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.49 E-value=7.3e-05 Score=57.50 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
-..+-++.|.|++||||||+.+.|+.-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 345678999999999999999999863
No 264
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.48 E-value=8.4e-05 Score=55.52 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.-.++.+++|.|+|||||||+++.++..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34456899999999999999999998754
No 265
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.48 E-value=8.7e-05 Score=57.03 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.-+++|.|++||||||+.+.+...+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3589999999999999999998765
No 266
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.48 E-value=7e-05 Score=51.91 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.+...|+|.|.+|+||||+.+.+..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3457899999999999999999975
No 267
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.47 E-value=0.0001 Score=56.24 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.++|.|+||+||||+++.+++.++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998753
No 268
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.47 E-value=7.7e-05 Score=57.58 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...-++.|.|++||||||+.+.++--
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 45678999999999999999999863
No 269
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.47 E-value=8.7e-05 Score=51.38 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=23.1
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
....+...|+|.|.+|+||||+.+++...
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 33445578999999999999999888753
No 270
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.47 E-value=8.6e-05 Score=58.42 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++.+|+++|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999766
No 271
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.46 E-value=7.5e-05 Score=57.27 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...-++.|.|++||||||+.+.|+--
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35578999999999999999999853
No 272
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.45 E-value=6.9e-05 Score=57.78 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
...++|.|++||||||+++.|+..++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999988764
No 273
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.45 E-value=0.00011 Score=58.61 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+..++|.|+||+|||++++.+++.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34567999999999999999999987
No 274
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.44 E-value=9.1e-05 Score=56.96 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+-++.|.|++||||||+.+.|+.-+
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3456789999999999999999997543
No 275
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=9.9e-05 Score=56.41 Aligned_cols=24 Identities=33% Similarity=0.796 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+. ++|.|++|+||||+++.++..+
T Consensus 37 ~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 37 PH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 45 9999999999999999999965
No 276
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.43 E-value=0.00013 Score=56.34 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++|.|++|+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999987
No 277
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.43 E-value=0.00012 Score=55.08 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC----C--cEecHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG----Y--THLSAGDLLRAE 59 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~----~--~~~~~~d~~~~~ 59 (196)
+..++|.|+||+|||+++..++..+. . .++...+++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 56799999999999999999998653 3 345666665544
No 278
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.43 E-value=0.00011 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
++++++++|+||||||++|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999886443
No 279
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.43 E-value=8.9e-05 Score=57.29 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
..+-++.|.|++||||||+.+.++--
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 35678999999999999999999853
No 280
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.42 E-value=7.6e-05 Score=55.73 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+.+.|+.-+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 355789999999999999999998644
No 281
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.42 E-value=0.00011 Score=57.99 Aligned_cols=26 Identities=42% Similarity=0.728 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+|.+|+++|++||||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999866
No 282
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.42 E-value=0.0011 Score=51.59 Aligned_cols=136 Identities=9% Similarity=0.064 Sum_probs=73.5
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
+..+..|+|.||+| +|+.+.|.+.+.-.+.+. .+.. +.++..+... .++ ....+...+. .
T Consensus 229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~p-R~gE~dG~~Y-------~Fv----~~~~V~~~~~--~ 288 (391)
T 3tsz_A 229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSEP-RDAGTDQRSS-------GII----RLHTIKQIID--Q 288 (391)
T ss_dssp CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCCC-CCSSSCCC---------CCC----CHHHHHHHHT--T
T ss_pred CCCCCEEEEECCCH---HHHHHHHHhhCccccccc---cCCC-CCcccCCccC-------CcC----cHHHHHHHHH--c
Confidence 34667899999998 899999998875434332 1111 1122211111 122 2455666665 5
Q ss_pred CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCH-HHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (196)
++.+|+| ...+....+.. ....| ++||+..|. +++.+| ..| ... ++++.++++++... .+...|..
T Consensus 289 Gk~~iLd---Id~qg~~~l~~-~~~~p-~~IFI~PPS~~~L~~~-~~r--~~~-~s~e~~~~~~~~a~----~~e~~~~~ 355 (391)
T 3tsz_A 289 DKHALLD---VTPNAVDRLNY-AQWYP-IVVFLNPDSKQGVKTM-RMR--LCP-ESRKSARKLYERSH----KLRKNNHH 355 (391)
T ss_dssp TCEEEEC---CCHHHHHHHHH-TTCCC-EEEEEECCCHHHHHHH-HHH--HCS-SCCCCHHHHHHHHH----HHHHHHGG
T ss_pred CCEEEEE---eCHHHHHHHHh-CCCCC-EEEEEeCcCHHHHHHH-Hhc--CCC-CCHHHHHHHHHHHH----HHHHhccc
Confidence 8889999 44455555555 45555 566666654 555554 555 111 22334555544432 22233444
Q ss_pred cCcEEEEeCC
Q 029252 177 KGKVRKVIFC 186 (196)
Q Consensus 177 ~~~~~~id~~ 186 (196)
..+.+++|.+
T Consensus 356 ~fd~vivNd~ 365 (391)
T 3tsz_A 356 LFTTTINLNS 365 (391)
T ss_dssp GCSEEEECCT
T ss_pred cCcEEEECCC
Confidence 5556666544
No 283
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.42 E-value=7.1e-05 Score=55.08 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+.+++|.|++||||||+.+.|+.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999999999854
No 284
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.42 E-value=5.8e-05 Score=58.15 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
...+++|.|++||||||+++.|...+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456899999999999999999987664
No 285
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=9e-05 Score=56.51 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=21.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 029252 24 VFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+++.||||+||||+++.+++.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 286
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.41 E-value=0.00011 Score=52.28 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=21.7
Q ss_pred ccCchhhhhcccCCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 5 VETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.+++...........+...|+|.|.+|+||||+.+++...
T Consensus 11 ~~~~~~q~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 11 RENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp ----------------CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred hhhhHhhccCCCCccceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3444444333344445678999999999999999999763
No 287
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.40 E-value=0.0001 Score=54.46 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..++|.|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999765
No 288
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.40 E-value=4.9e-05 Score=57.15 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+++.|+.-+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356789999999999999999997644
No 289
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.40 E-value=0.00013 Score=55.62 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..++.++.|.|+|||||||+.+.|+..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567899999999999999999998654
No 290
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.40 E-value=0.00013 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++.+++|.|+|||||||++..++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 55789999999999999988887643
No 291
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.40 E-value=6.4e-05 Score=57.55 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
-..+-+++|.|++||||||+.+.++--
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 345678999999999999999999853
No 292
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.40 E-value=0.00013 Score=57.22 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.+.-+++|.|++||||||+++.+...++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999998774
No 293
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.39 E-value=0.00016 Score=54.77 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+|+|+|++||||||++..|+..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999866
No 294
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.39 E-value=2.3e-05 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.-++|.|+||+|||++|+.+++..+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 3488999999999999999987665
No 295
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.38 E-value=9.7e-05 Score=50.39 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.....|+|.|.+|+||||+.+.|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999999764
No 296
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.37 E-value=0.00011 Score=57.01 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...-++.|.||+||||||+.+.|+.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhC
Confidence 4567899999999999999999985
No 297
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.37 E-value=0.00016 Score=51.82 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+..+++++|+|||||||++..++.++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999888776
No 298
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.37 E-value=0.00014 Score=53.95 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+..+++|.|++||||||++..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999988643
No 299
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.36 E-value=0.00014 Score=55.84 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
.+..++|.|++|+||||+++.+++.++.
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999999998853
No 300
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.36 E-value=0.00014 Score=57.58 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh-----C--CcEecHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLL 56 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~-----~--~~~~~~~d~~ 56 (196)
+..++|.|+||+||||+++.+++.+ + +.+++..++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 5679999999999999999999876 3 3455665554
No 301
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.36 E-value=0.00011 Score=50.83 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
....|+|.|.+|+||||+.+.|...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999753
No 302
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.35 E-value=0.00016 Score=55.45 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
...+|+|.|+|||||||+.+.|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998754
No 303
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.34 E-value=0.00011 Score=50.93 Aligned_cols=25 Identities=20% Similarity=0.423 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+...|++.|.+|+||||++..|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4468999999999999999999864
No 304
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.34 E-value=0.00019 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+++.|+||+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 39999999999999999999886
No 305
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.33 E-value=7.1e-05 Score=57.05 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 029252 24 VFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
++|.|+||+|||++|+.+++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 99999999999999999999876
No 306
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.32 E-value=0.00015 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
++..|+|.|.+|+||||+.+.|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999976
No 307
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.31 E-value=6.6e-05 Score=57.60 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
-..+-+++|.|++||||||+.+.++--
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345678999999999999999999853
No 308
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.31 E-value=0.00013 Score=53.60 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
+..++|.|+||+|||++|+.+++..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35688999999999999999998763
No 309
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.30 E-value=0.0002 Score=50.88 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+...|+|.|.+||||||++..|+..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 455789999999999999999999875
No 310
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.30 E-value=0.00021 Score=54.90 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+..+|+|+|.||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999876
No 311
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.29 E-value=0.00016 Score=48.99 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~ 43 (196)
..|+|.|++|+||||+.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999975
No 312
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=0.00021 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+++.|+||+||||+++.+++.+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 49999999999999999999886
No 313
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00014 Score=57.87 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+.+++|.|++||||||+++.|+.-+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 356789999999999999999998744
No 314
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.27 E-value=0.00021 Score=54.21 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d 54 (196)
..++|.|++|+||||+++.+++..+..+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 689999999999999999999988766666543
No 315
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.27 E-value=0.00018 Score=49.65 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.+.+|+|++||||||+++.|.--++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3889999999999999999976554
No 316
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.27 E-value=0.00022 Score=60.26 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+..++|.|+||+|||++++.|++.+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 344568999999999999999999997
No 317
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.25 E-value=0.00017 Score=55.30 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
....++.|.|+|||||||+++.++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999765
No 318
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.24 E-value=0.00017 Score=50.23 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=21.3
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
+......|+|.|.+|+||||+.+.+..
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344557899999999999999998864
No 319
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.24 E-value=0.00031 Score=51.31 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..++.++++.|.+|+||||++..|+..+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3467889999999999999999999765
No 320
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.24 E-value=0.00021 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
..++|.|++||||||+.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 321
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.24 E-value=0.0011 Score=52.71 Aligned_cols=137 Identities=9% Similarity=0.060 Sum_probs=71.7
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (196)
+..+..|+|.||+|+| +.++|.+.+.-.+.+.- .| . +.++..+... .+ +....++..+. .
T Consensus 221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~--TR-p-R~gE~dG~~Y-------~F----Ts~~~V~~vl~--~ 280 (468)
T 3shw_A 221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQIAK--SE-P-RDAGTDQRSS-------GI----IRLHTIKQIID--Q 280 (468)
T ss_dssp CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEECC--CB-C------------------CB----CCHHHHHHHHT--T
T ss_pred CCCCCEEEEECCCHHH---HHHHHHHhCCCceeeec--CC-C-CCcccccccC-------Cc----ccHHHHHHHHH--C
Confidence 4466889999999999 88888887753333221 12 1 1222211100 11 23556666665 5
Q ss_pred CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhc
Q 029252 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 177 (196)
Q Consensus 98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (196)
++.+|+| ...+....+.. ....| ++||+..|.-..++++.+|.. .++.+.++++++... .+...|...
T Consensus 281 Gk~~iLd---Id~qg~~~l~~-~~~~p-~~IFI~PPS~e~L~~~~~rl~---~~see~~~r~~~~a~----~~e~~~~~~ 348 (468)
T 3shw_A 281 DKHALLD---VTPNAVDRLNY-AQWYP-IVVFLNPDSKQGVKTMRMRLC---PESRKSARKLYERSH----KLRKNNHHL 348 (468)
T ss_dssp TCEEEEC---CCHHHHHHHHH-TTCCC-EEEEEECSCHHHHHHHHHHHC---TTCCCCHHHHHHHHH----HHHHHHGGG
T ss_pred CCeEEEE---eCHHHHHHHHh-cCCCC-EEEEEeCcCHHHHHHHHhccC---CCCHHHHHHHHHHHH----HHHHhhhcc
Confidence 8889999 44455555555 44555 577776665444444444411 122334555554432 222334445
Q ss_pred CcEEEEeCC
Q 029252 178 GKVRKVIFC 186 (196)
Q Consensus 178 ~~~~~id~~ 186 (196)
.+.+++|.+
T Consensus 349 fD~vIvNdd 357 (468)
T 3shw_A 349 FTTTINLNS 357 (468)
T ss_dssp CSEEEECBT
T ss_pred CCEEEECCC
Confidence 556666543
No 322
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.24 E-value=0.00019 Score=54.16 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC--CcEecH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA 52 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~ 52 (196)
+..++|.|+||+||||+|..++...+ ..+++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 45679999999999999999987533 334444
No 323
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.23 E-value=0.00011 Score=51.08 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
....|+|.|.+|+||||+.+.+...-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 44679999999999999999998643
No 324
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.23 E-value=0.00023 Score=54.61 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+..++.|.|+|||||||++..++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998764
No 325
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.23 E-value=0.0002 Score=53.82 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=21.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 029252 24 VFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 24 i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+++.|++|+||||+++.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 9999999999999999999886
No 326
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.23 E-value=0.00011 Score=55.84 Aligned_cols=26 Identities=42% Similarity=0.540 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
+.+++|.|++||||||+++.|+..+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45799999999999999999987653
No 327
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.23 E-value=0.00027 Score=49.04 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=23.3
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+......|+|.|.+|+||||+.+.|...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445678999999999999999999753
No 328
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.23 E-value=0.00012 Score=51.49 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=23.8
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.+......++|.|++||||||+.+.|+.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4555678899999999999999998864
No 329
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.22 E-value=0.00018 Score=56.64 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+.+|+|+|++||||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 330
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.22 E-value=0.00021 Score=48.15 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
....|+|.|.+||||||+.+.+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999763
No 331
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.22 E-value=0.00011 Score=62.48 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~ 50 (196)
.+..++|.||||+||||+++.++..++..++
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i 540 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4567899999999999999999999875443
No 332
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.21 E-value=0.00028 Score=50.27 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+...|+|.|.+||||||++..++...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999875
No 333
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.21 E-value=0.00032 Score=48.75 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
......|+|.|.+|+||||+..+|...
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 344577999999999999999999874
No 334
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.21 E-value=0.00037 Score=48.72 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+..+++++|++||||||.+..++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 345799999999999999999988877
No 335
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00031 Score=48.63 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.....|+|.|.+||||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999764
No 336
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.19 E-value=0.00019 Score=54.35 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.+++|+|++||||||+.+.|...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 57899999999999999999864
No 337
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.17 E-value=0.00028 Score=48.12 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+...|+|.|.+|+||||+.+.|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4467999999999999999999864
No 338
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.17 E-value=0.00018 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.+...|+|.|.+|+||||+...+..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHHc
Confidence 3456799999999999999999974
No 339
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.17 E-value=0.00026 Score=48.34 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+..|+|.|.+|+||||+.+.|...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999753
No 340
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.17 E-value=0.00029 Score=47.32 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+..|++.|.+|+||||+...+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999998753
No 341
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.16 E-value=0.00032 Score=48.50 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=22.7
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
......|+|.|.+|+||||+.+.+...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 344568999999999999999998754
No 342
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.16 E-value=0.00016 Score=50.44 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=21.6
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+...|+|.|.+|+||||+.+.+..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 334456789999999999999998876543
No 343
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.16 E-value=0.00033 Score=48.76 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...+...|+|.|.+|+||||+.+++...
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 3445578999999999999999999864
No 344
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.16 E-value=0.00037 Score=47.46 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.+...|+|.|.+|+||||+.+.+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999975
No 345
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.15 E-value=0.00023 Score=51.77 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=21.5
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.......|+|.|.||+||||+...|..
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhC
Confidence 344567899999999999999999874
No 346
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.15 E-value=0.00031 Score=46.96 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+.|++.|.+|+||||+.+++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 347
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.14 E-value=0.00036 Score=52.24 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++.++++.|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999999765
No 348
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.13 E-value=0.00046 Score=52.50 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~ 47 (196)
..+..+++.|++|+||||+++.+++.+..
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 34678999999999999999999998863
No 349
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.13 E-value=0.00038 Score=49.27 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.....|+|.|++|+||||+...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345789999999999999999998753
No 350
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.13 E-value=0.0003 Score=48.70 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
......|+|.|.+|+||||+.+++...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 344568999999999999999998763
No 351
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.13 E-value=0.00031 Score=53.90 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...+++|.|+|||||||+.+.|+..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhcc
Confidence 3468999999999999999999753
No 352
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.12 E-value=0.00029 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
....|+|.|.+|+||||+.+.|...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999999763
No 353
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=97.12 E-value=0.015 Score=43.48 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=53.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (196)
...+.-|+|.|| ||+|+.+.|.+.+.- .-++.. .... +..+.+++ ...+...+.
T Consensus 142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~------------~~r~----i~~~~fis----~~~V~~vl~-- 196 (308)
T 3kfv_A 142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAET------------VSRT----DSPSKIIK----LDTVRVIAE-- 196 (308)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCC------------C------------CCC----HHHHHHHHH--
T ss_pred cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccc------------cccc----ccCCCeec----HHHHHHHHH--
Confidence 334556888999 799999999887742 222211 0000 23445553 455555555
Q ss_pred CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC-HHHHHHHHhhc
Q 029252 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNR 144 (196)
Q Consensus 97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R 144 (196)
.++.+|+| ...+.+..+.. ....| ++||+..| .+++.+| ..|
T Consensus 197 ~Gk~~ILD---Id~QGa~~lk~-~~~~p-i~IFI~PPS~eeL~~r-r~R 239 (308)
T 3kfv_A 197 KDKHALLD---VTPSAIERLNY-VQYYP-IVVFFIPESRPALKAL-RQW 239 (308)
T ss_dssp TTCEEEEC---CCHHHHHHHHH-TTCCC-EEEEEEESCHHHHHHH-HHH
T ss_pred CCCcEEEE---ECHHHHHHHHh-cCCCC-EEEEEeCCCHHHHHHH-Hhc
Confidence 58899998 44455555555 45556 55665554 5666665 545
No 354
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.12 E-value=0.00025 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~ 43 (196)
..|+|.|.+|+||||+.+++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999975
No 355
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.11 E-value=0.0002 Score=57.65 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+..++|.|++||||||+++.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34569999999999999999998755
No 356
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.11 E-value=0.00036 Score=55.99 Aligned_cols=27 Identities=33% Similarity=0.629 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+|+|+|.+||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999765
No 357
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.11 E-value=0.00032 Score=46.94 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
..|++.|.+|+||||+.+.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999764
No 358
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.11 E-value=0.00037 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+..++.|.|+|||||||++..++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998654
No 359
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.11 E-value=0.00016 Score=58.04 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.-++|.|+||+|||++|+.+++.++
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3589999999999999999998774
No 360
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.10 E-value=0.00034 Score=52.53 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
...+++|.|++||||||+.+.|. ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 34689999999999999999998 54
No 361
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.10 E-value=0.00036 Score=46.85 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|++.|.+|+||||+.+.+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999753
No 362
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.09 E-value=0.00031 Score=54.78 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
+..++.|.|+|||||||+++.++-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Confidence 567999999999999999997763
No 363
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.09 E-value=0.00031 Score=55.12 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=21.4
Q ss_pred CCCcE--EEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTV--VFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~--i~i~G~~gsGKsTla~~L~~~ 44 (196)
..+.+ ++|.|++||||||+.+.|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34455 999999999999999999753
No 364
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.08 E-value=0.00033 Score=56.80 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4456899999999999999999998644
No 365
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.08 E-value=0.00045 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
+...|+|.|.+|+||||+.+.+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356799999999999999999965
No 366
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.08 E-value=0.00044 Score=52.83 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+..+|++.|+||+||||+++.|+..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456889999999999999999998765
No 367
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.08 E-value=0.00036 Score=47.63 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
....|+|.|.+||||||+.+.+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999998753
No 368
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.07 E-value=0.00045 Score=47.20 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=21.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
..+...|+|.|.+|+||||+.+++...
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 345578999999999999999998753
No 369
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.07 E-value=0.0004 Score=58.64 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHFGYTH 49 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~~~~~ 49 (196)
.++|.|+||+|||++|+.+++.++..+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~ 516 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIEL 516 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCE
Confidence 699999999999999999999997543
No 370
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.07 E-value=0.0004 Score=48.55 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
....|+|.|.+||||||+...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4467999999999999999999753
No 371
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.07 E-value=0.00036 Score=54.62 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.+.++.|.|++||||||+.+.|+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3458999999999999999999863
No 372
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.06 E-value=0.0004 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...|+|.|.+|+||||+.+.|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999999864
No 373
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.06 E-value=0.00041 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~ 43 (196)
..|+|.|.+|+||||+.+.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5699999999999999999976
No 374
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.06 E-value=0.00039 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...|+|.|.+|+||||+.+++..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 35799999999999999999864
No 375
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.05 E-value=0.00034 Score=50.47 Aligned_cols=25 Identities=20% Similarity=0.427 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.....|+|.|.+|+||||+.+.|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 3457899999999999999999875
No 376
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.05 E-value=0.00032 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...|+|.|.+|+||||+.+.|..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 46799999999999999999875
No 377
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.05 E-value=0.00035 Score=49.21 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
....|+|.|.+|+||||+.+++...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999864
No 378
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.05 E-value=0.00049 Score=54.23 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+|+++|++|+||||++..|+..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999765
No 379
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.05 E-value=0.00065 Score=53.65 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=26.5
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.+-.++.++.|.|++||||||+++.|+....
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4445678999999999999999999998764
No 380
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.04 E-value=0.00041 Score=56.28 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+-++.|.|++||||||+++.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998644
No 381
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.04 E-value=0.00042 Score=48.34 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=20.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
......|+|.|.+|+||||+.+.+..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 44567899999999999999999874
No 382
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.04 E-value=0.0005 Score=49.64 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.++.+++|.|+||+|||++|..++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3567999999999999999988764
No 383
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.04 E-value=0.00038 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+.++++.|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999766
No 384
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.04 E-value=0.00038 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...|+|.|.+|+||||+.+.+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35699999999999999999975
No 385
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.04 E-value=0.00044 Score=47.55 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.....|+|.|.+|+||||+.+++...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 44578999999999999999998753
No 386
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.03 E-value=0.00039 Score=56.93 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++..++|.|++||||||+++.|+.-+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55789999999999999999998654
No 387
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.03 E-value=0.00047 Score=46.94 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
+...|+|.|.+|+||||+.+++..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 346799999999999999999975
No 388
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.02 E-value=0.00037 Score=47.58 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.+...|+|.|.+|+||||+.+++...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34467999999999999999999863
No 389
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.02 E-value=0.0005 Score=47.10 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+...|+|.|.+|+||||+.+.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999854
No 390
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.01 E-value=0.00044 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+...|+|.|.+|+||||+.+.|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3467999999999999999999853
No 391
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.01 E-value=0.00051 Score=47.94 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=21.6
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...+...|+|.|.+|+||||+.+.+...
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3445678999999999999999999753
No 392
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.00 E-value=0.00035 Score=47.56 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+|+||||+.+.+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999753
No 393
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.00 E-value=0.0005 Score=52.54 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.++.++.|.|+|||||||+|..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999875
No 394
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.00 E-value=0.00036 Score=49.07 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
....|+|.|.+|+||||+...|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 346799999999999999999976
No 395
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.00 E-value=0.00036 Score=57.15 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++..+.|.|++||||||+++.|+.-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 355789999999999999999998654
No 396
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.00 E-value=0.00055 Score=53.77 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++.+|++.|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 397
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.99 E-value=0.00042 Score=55.25 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-+++|.|++||||||+++.|+.-+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 789999999999999999998755
No 398
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.99 E-value=0.00035 Score=52.40 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
..+++|.|+|||||||+.+.|+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 468999999999999999999743
No 399
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.99 E-value=0.00047 Score=51.85 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
...++|.|+||+||||++..|.++ |+..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~ 173 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLVA 173 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence 467999999999999999999875 555443
No 400
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00051 Score=56.45 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
...+.++.|.|++||||||+.+.|+..+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3456899999999999999999998644
No 401
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.98 E-value=0.00066 Score=51.25 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=27.5
Q ss_pred hhhhhcccC-CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 9 VKEADATVT-VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 9 ~~~~~~~~~-~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+.++.... -.++.+++|.|+||+||||++..++...
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344443332 3456899999999999999999998654
No 402
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.98 E-value=0.00052 Score=50.56 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|+|||||||+.+.|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999753
No 403
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.98 E-value=0.00044 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+|+||||+.+.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999753
No 404
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.97 E-value=0.00043 Score=47.59 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+|+||||+.+.|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999863
No 405
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.97 E-value=0.00047 Score=47.47 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
....|+|.|.+|+||||+.+++...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999864
No 406
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.97 E-value=0.00061 Score=52.33 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+..++.|.|+|||||||+|..++...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998754
No 407
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.97 E-value=0.0004 Score=47.24 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...|+|.|.+|+||||+.+.+..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 36799999999999999999975
No 408
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.97 E-value=0.00039 Score=57.19 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
..++|.|+|||||||+++.++..++
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999998774
No 409
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.97 E-value=0.00041 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
..|+|.|.+||||||+.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998753
No 410
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.96 E-value=0.00049 Score=46.36 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~ 43 (196)
..|+|.|.+|+||||+.+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5699999999999999999975
No 411
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.96 E-value=0.0004 Score=52.25 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=22.6
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 17 ~~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
+++++-.|+|+|.||+||||+...|..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 344557899999999999999999975
No 412
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.96 E-value=0.00046 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.7
Q ss_pred CCcEEEE--EcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFV--LGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i--~G~~gsGKsTla~~L~~~~ 45 (196)
.+..++| .|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4567888 9999999999999999875
No 413
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.95 E-value=0.00071 Score=51.38 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.+++|.|++|+||||+++.+++..+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998874
No 414
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.95 E-value=0.00037 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~ 42 (196)
.+...|+|.|.+|+||||+...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 566889999999999999998886
No 415
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.95 E-value=0.00056 Score=52.34 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=26.5
Q ss_pred cCCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
.+-.++.++.|.|++||||||+.+.++....
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4445678999999999999999999998764
No 416
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.95 E-value=0.00056 Score=46.00 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCChHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIV 42 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~ 42 (196)
..|+|.|.+|+||||+.+++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999885
No 417
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.95 E-value=0.00062 Score=45.56 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+.+.+|.|+.||||||+...+.=.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999988643
No 418
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.95 E-value=0.00038 Score=59.56 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+..++|.|+||+||||+++.+++.+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34557999999999999999999987
No 419
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.94 E-value=0.00049 Score=46.99 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+|+||||+.+.+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999998753
No 420
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.94 E-value=0.00057 Score=47.42 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
+...|++.|.+|+||||+.+++..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999986
No 421
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.93 E-value=0.00037 Score=57.21 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.++.|.|++||||||+++.|+.-+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 355789999999999999999998654
No 422
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.92 E-value=0.00061 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~ 43 (196)
..|+|.|.+|+||||+.+++..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999863
No 423
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.92 E-value=0.00065 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+.++.|.|+|||||||+|..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 56799999999999999999998753
No 424
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.92 E-value=0.00061 Score=45.90 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+|+||||+.+.+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999764
No 425
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.92 E-value=0.00064 Score=51.04 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+..++|.|+||+|||++|+.+++..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 3558899999999999999999854
No 426
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.91 E-value=0.00095 Score=47.76 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
...|++.|++|+||||++-.++..+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4679999999999999988888765
No 427
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.91 E-value=0.00039 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...|+|.|.+|+||||+.+++..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999975
No 428
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.91 E-value=0.00055 Score=47.19 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...|+|.|.+|+||||+.+.|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999986
No 429
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.91 E-value=0.00052 Score=48.09 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
....|+|.|.+|+||||+.+++..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhh
Confidence 346799999999999999999975
No 430
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.91 E-value=0.00065 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.....|+|.|.+||||||+..+|..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999974
No 431
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.91 E-value=0.00052 Score=48.20 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+|+||||+.+++...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 467999999999999999998763
No 432
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.91 E-value=0.00072 Score=57.07 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+..++|.|+||+||||+++.+++.+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 355678999999999999999999987
No 433
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.90 E-value=0.00051 Score=46.79 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
....|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999998864
No 434
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.89 E-value=0.00043 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIV 42 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~ 42 (196)
....|+|.|.+|+|||||.+++.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999885
No 435
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.89 E-value=0.00084 Score=46.64 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
..+...|+|.|.+|+||||+.+.+..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 34567899999999999999998853
No 436
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.89 E-value=0.00044 Score=56.82 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.++.|.|++||||||+++.|+.-+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 356789999999999999999998644
No 437
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.00091 Score=46.40 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
....|+|.|.+|+||||+.+.|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 456799999999999999999976
No 438
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.87 E-value=0.00046 Score=47.75 Aligned_cols=27 Identities=22% Similarity=0.064 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
....|+|.|.+|+||||+.+.+...+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 346799999999999999988876553
No 439
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.87 E-value=0.00066 Score=47.02 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+|+||||+.++|...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999999863
No 440
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.00083 Score=46.28 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.+...|+|.|.+|+||||+.+++..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999974
No 441
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.86 E-value=0.00065 Score=46.51 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...|+|.|.+|+||||+.+.+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999875
No 442
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.00056 Score=55.44 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..-++.|.|++||||||+++.|+.-+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998643
No 443
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.86 E-value=0.00071 Score=47.31 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
....|+|.|.+|+||||+.+.|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999764
No 444
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.00063 Score=46.38 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
....|+|.|.+|+||||+.+.+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3467999999999999999999753
No 445
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.85 E-value=0.00055 Score=47.87 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
....|+|.|.+|+||||+.+.|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 346799999999999999999864
No 446
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.85 E-value=0.00086 Score=56.62 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+++.|+||+|||++|+.+++.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999986
No 447
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.85 E-value=0.00094 Score=53.01 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++.+++|.|+||+||||++..++...
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999999988754
No 448
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.85 E-value=0.0009 Score=44.84 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.|+|.|.+|+||||+.+.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 449
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.84 E-value=0.00079 Score=47.44 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+...|+|.|.+|+||||+..++...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999864
No 450
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.84 E-value=0.0008 Score=46.24 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.+...|+|.|.+|+||||+.+++..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999874
No 451
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.84 E-value=0.00089 Score=54.71 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+++|.|+|||||||++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 452
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.84 E-value=0.00063 Score=55.95 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..+-++.|.|++||||||+++.|+..+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 456789999999999999999998644
No 453
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.83 E-value=0.00075 Score=54.73 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+-++.|.|++||||||+++.|+..+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998643
No 454
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.83 E-value=0.00084 Score=47.12 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.+...|+|.|.+|+||||+..++..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 3457899999999999999999875
No 455
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.83 E-value=0.00074 Score=51.03 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+..++.|.|+|||||||+|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999864
No 456
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.83 E-value=0.00091 Score=47.07 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=22.6
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
......|+|.|.+|+||||+...+...
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 344567999999999999999999753
No 457
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.83 E-value=0.00069 Score=54.76 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANI 41 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L 41 (196)
.+..+++|.|++||||||+++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 35679999999999999999994
No 458
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.82 E-value=0.00067 Score=47.06 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
+...|+|.|.+|+||||+.+.+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 4468999999999999999999764
No 459
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.81 E-value=0.00074 Score=47.18 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.++..|+|.|.+|+||||+.+++..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999863
No 460
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.81 E-value=0.00036 Score=57.09 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.++.|.|++||||||+++.|+.-+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 356789999999999999999987644
No 461
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.80 E-value=0.0009 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++|.|++||||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999877
No 462
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.80 E-value=0.0014 Score=46.44 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+..+.+++|++||||||.+-.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346899999999999999998888876
No 463
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.80 E-value=0.00081 Score=55.29 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.+-++.|.|++||||||+++.|+..+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998643
No 464
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.79 E-value=0.00067 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+||||||+.+.+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999753
No 465
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.79 E-value=0.00089 Score=51.53 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.+...|+|.|.+||||||+++.+.-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHH
Confidence 3457899999999999999999853
No 466
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.78 E-value=0.00025 Score=53.28 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...+++|.|+|||||||+.+.|+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 457899999999999999999964
No 467
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.78 E-value=0.001 Score=46.73 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.....|+|.|.+|+||||+...|..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999975
No 468
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.77 E-value=0.00084 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
+...|+|.|.+|+||||+...+..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346799999999999999999874
No 469
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.77 E-value=0.00075 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+|+||||+.+.+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999753
No 470
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.76 E-value=0.00098 Score=49.25 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...|+|.|.|||||||+.++|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 35799999999999999999985
No 471
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.75 E-value=0.00081 Score=57.56 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
..++|.|+||+|||++|+.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999987
No 472
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.75 E-value=0.00074 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...|+|.|.|||||||+...|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46799999999999999999975
No 473
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.74 E-value=0.00066 Score=50.92 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
++..|+|.|.||+||||+.+.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC
Confidence 345799999999999999999975
No 474
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.74 E-value=0.00086 Score=46.12 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~ 43 (196)
.|+|.|.+|+||||+.+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 475
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.74 E-value=0.00052 Score=56.25 Aligned_cols=27 Identities=41% Similarity=0.447 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.++.|.|++||||||+++.|+.-+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345789999999999999999997654
No 476
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.74 E-value=0.00087 Score=46.85 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+|+||||+...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999763
No 477
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.73 E-value=0.00066 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
-...|+|.|++|+||||+.+.|..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999763
No 478
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.73 E-value=0.0012 Score=51.29 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.++..+.|.|+||+||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4567899999999999999999987
No 479
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.72 E-value=0.00056 Score=48.53 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=22.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
......|+|.|.+|+||||+...|...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345578999999999999999998754
No 480
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.72 E-value=0.0012 Score=47.23 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
.....|+|.|.+|+||||+...|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999865
No 481
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.71 E-value=0.00084 Score=47.64 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHH-HHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCAN-IVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~-L~~~~ 45 (196)
.....|+|.|.+||||||+.++ +...+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3456799999999999999998 54444
No 482
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.001 Score=54.61 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-++.|.|++||||||+++.|+.-+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999998643
No 483
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.68 E-value=0.0012 Score=49.78 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 029252 23 VVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++.|.|+|||||||+|..++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999988876543
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.67 E-value=0.0013 Score=53.21 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
+..+++|.|++||||||+++.++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998654
No 485
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.67 E-value=0.0014 Score=50.53 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
++.++.|.|+|||||||+|..++...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 55789999999999999999988754
No 486
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.00082 Score=46.55 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+|+||||+.+++...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 367999999999999999999864
No 487
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.64 E-value=0.0012 Score=48.35 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHH
Q 029252 23 VVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 23 ~i~i~G~~gsGKsTla~~L~~~ 44 (196)
.|+|.|.|||||||+...|...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999754
No 488
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.64 E-value=0.0014 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+||||||+...|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999753
No 489
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.0014 Score=45.19 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
...|+|.|.+|+||||+.++|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 367999999999999999999764
No 490
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.63 E-value=0.0016 Score=51.48 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
.++.+++|.|+||+||||++..++...
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999988753
No 491
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.62 E-value=0.0014 Score=50.68 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=26.4
Q ss_pred cccCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-..+-.++..+.|+|++|+||||+++.+++..
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34455567899999999999999999998754
No 492
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.62 E-value=0.0013 Score=45.80 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...|+|.|.+|+||||+...|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999875
No 493
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.62 E-value=0.0018 Score=49.33 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (196)
Q Consensus 18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~ 45 (196)
-.++-+++|.|.||+||||++..++...
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999999998764
No 494
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.61 E-value=0.00093 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
..-|+|.|++||||||+.+.|+..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCC
Confidence 345899999999999999999753
No 495
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.60 E-value=0.0015 Score=53.02 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...+|.|+|+.|+||||+|+.+++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999996
No 496
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.60 E-value=0.0015 Score=45.77 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHHH
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
...|+|.|.+|+||||+...|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999999975
No 497
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.59 E-value=0.0015 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHHH
Q 029252 22 TVVFVLGGPGSGKGTQCANIVEH 44 (196)
Q Consensus 22 ~~i~i~G~~gsGKsTla~~L~~~ 44 (196)
..|+|.|.||+||||+..++...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999999753
No 498
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.58 E-value=0.0016 Score=45.90 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (196)
Q Consensus 21 ~~~i~i~G~~gsGKsTla~~L~~~~~ 46 (196)
+.+.+|.|+.||||||+...+.=.+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46889999999999999999875553
No 499
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.58 E-value=0.0012 Score=49.63 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (196)
Q Consensus 20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~ 51 (196)
....++|.|+||+||||+|..|.+ .|+..++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 346799999999999999999865 3554443
No 500
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.57 E-value=0.0014 Score=56.57 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (196)
Q Consensus 19 ~~~~~i~i~G~~gsGKsTla~~L~~ 43 (196)
..+.++.|.|++||||||+++.|+.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999984
Done!