BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029253
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F1D|A Chain A, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|B Chain B, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|C Chain C, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|D Chain D, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|E Chain E, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|F Chain F, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|G Chain G, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|H Chain H, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|I Chain I, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|J Chain J, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|K Chain K, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|L Chain L, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|M Chain M, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|N Chain N, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|O Chain O, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
pdb|2F1D|P Chain P, X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
Length = 207
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 102/116 (87%), Positives = 112/116 (96%)
Query: 71 ASTSSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDV 130
AS+SS++ GRIGEVKRVTKETNVSVKIN+DG+GVADSS+ IPFLDHMLDQLASHGLFDV
Sbjct: 1 ASSSSSMALGRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDV 60
Query: 131 HVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSL 186
HVRATGD+HIDDHHTNED+ LAIGTALL+ALG+RKGINRFGDFTAPLDEALIHVSL
Sbjct: 61 HVRATGDVHIDDHHTNEDIALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSL 116
>pdb|1RHY|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Dehydratase
pdb|1RHY|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Dehydratase
Length = 202
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 70/108 (64%), Gaps = 5/108 (4%)
Query: 79 SGRIGEVKRVTKETNVSVKINVDG-SGVADS----STCIPFLDHMLDQLASHGLFDVHVR 133
S RI V+R T ET++S I++D GV + ST I FLDHM LA HG + ++
Sbjct: 2 SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQ 61
Query: 134 ATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEAL 181
GD+HIDDHHT ED LA+G A +ALG+RKGI R+G APLDE+L
Sbjct: 62 CKGDLHIDDHHTAEDCALALGEAFKKALGERKGIKRYGYAYAPLDESL 109
>pdb|2AE8|A Chain A, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|B Chain B, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|C Chain C, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|D Chain D, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|E Chain E, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
pdb|2AE8|F Chain F, Crystal Structure Of Imidazoleglycerol-Phosphate
Dehydratase From Staphylococcus Aureus Subsp. Aureus
N315
Length = 221
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 82 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHID 141
I + +R T ET +++ I+ D S + +T + FL+H L H +++ A GDI +D
Sbjct: 31 IYQKQRNTAETQLNISISDDQSP-SHINTGVGFLNHXLTLFTFHSGLSLNIEAQGDIDVD 89
Query: 142 DHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHV 184
DHH ED+G+ IG LL+ + D+K R+G P DE L V
Sbjct: 90 DHHVTEDIGIVIGQLLLEXIKDKKHFVRYGTXYIPXDETLARV 132
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 28.1 bits (61), Expect = 3.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 108 SSTCIPFLDHMLDQLASHGLFDV 130
+ T IP +D ++DQ A HGL +V
Sbjct: 152 AETVIPMMDAVIDQCAEHGLDEV 174
>pdb|3PE7|A Chain A, Oligogalacturonate Lyase In Complex With Manganese
Length = 388
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 151 LAIGTALLQALGDRKGINRFGDFTAPLDEALIHV 184
L + T + L + +G N FG F +P D+AL +V
Sbjct: 65 LDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYV 98
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 28.1 bits (61), Expect = 3.5, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 108 SSTCIPFLDHMLDQLASHGLFDV 130
+ T IP +D ++DQ A HGL +V
Sbjct: 397 AETVIPMMDAVIDQCAEHGLDEV 419
>pdb|3URM|A Chain A, Crystal Structure Of The Periplasmic Sugar Binding Protein
Chve
pdb|3URM|B Chain B, Crystal Structure Of The Periplasmic Sugar Binding Protein
Chve
pdb|3UUG|A Chain A, Crystal Structure Of The Periplasmic Sugar Binding Protein
Chve
pdb|3UUG|B Chain B, Crystal Structure Of The Periplasmic Sugar Binding Protein
Chve
Length = 330
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 88 VTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGL----FDVHVRATGDIHIDDH 143
VTK V V ++DG+ ++D +L Q G+ +D +R +GD+
Sbjct: 56 VTKGVKVLVIASIDGTTLSD----------VLKQAGEQGIKVIAYDRLIRNSGDVSYYAT 105
Query: 144 HTNEDVGLAIGTALLQALGDRKGINRF 170
N VG+ T++ LG + G F
Sbjct: 106 FDNFQVGVLQATSITDKLGLKDGKGPF 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,110,228
Number of Sequences: 62578
Number of extensions: 191704
Number of successful extensions: 440
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 9
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)