Query 029253
Match_columns 196
No_of_seqs 147 out of 1034
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 09:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02800 imidazoleglycerol-pho 100.0 2.7E-61 5.9E-66 421.2 14.8 160 23-194 12-178 (261)
2 COG0131 HisB Imidazoleglycerol 100.0 7.2E-59 1.6E-63 392.1 11.7 117 79-195 2-118 (195)
3 PRK13598 hisB imidazoleglycero 100.0 3.7E-58 8E-63 387.5 12.8 115 81-195 3-117 (193)
4 PRK00951 hisB imidazoleglycero 100.0 3.9E-58 8.5E-63 387.7 12.7 115 80-194 2-116 (195)
5 cd07914 IGPD Imidazoleglycerol 100.0 5.9E-57 1.3E-61 379.3 11.4 112 83-194 1-112 (190)
6 PRK05446 imidazole glycerol-ph 100.0 5.4E-53 1.2E-57 378.7 12.8 116 78-194 163-278 (354)
7 PF00475 IGPD: Imidazoleglycer 100.0 6E-46 1.3E-50 301.9 6.8 86 110-195 1-86 (145)
8 KOG3143 Imidazoleglycerol-phos 100.0 1.5E-45 3.2E-50 311.8 5.9 135 45-194 6-140 (219)
9 PRK05446 imidazole glycerol-ph 97.6 0.00016 3.4E-09 66.1 7.0 78 81-162 254-341 (354)
10 PLN02800 imidazoleglycerol-pho 97.6 0.00025 5.4E-09 63.4 7.5 79 81-162 153-243 (261)
11 PRK13598 hisB imidazoleglycero 97.5 0.00024 5.3E-09 61.1 6.6 79 81-162 91-180 (193)
12 cd07914 IGPD Imidazoleglycerol 97.5 0.00029 6.3E-09 60.4 6.8 79 81-162 87-176 (190)
13 PRK00951 hisB imidazoleglycero 97.4 0.0007 1.5E-08 58.3 7.8 80 80-162 90-180 (195)
14 PF00475 IGPD: Imidazoleglycer 97.4 0.001 2.2E-08 55.1 8.3 76 80-158 59-145 (145)
15 COG0131 HisB Imidazoleglycerol 96.9 0.0022 4.8E-08 55.5 6.1 72 89-163 100-182 (195)
16 KOG3143 Imidazoleglycerol-phos 89.8 0.66 1.4E-05 40.6 5.0 75 88-164 122-206 (219)
17 TIGR00321 dhys deoxyhypusine s 59.6 11 0.00025 34.5 3.7 68 95-181 47-125 (301)
18 cd00419 Ferrochelatase_C Ferro 50.5 35 0.00077 27.0 4.7 46 113-159 77-122 (135)
19 PRK02301 putative deoxyhypusin 50.5 13 0.00028 34.4 2.5 75 92-181 56-138 (316)
20 PRK01221 putative deoxyhypusin 49.7 4 8.8E-05 37.5 -0.8 72 95-180 56-135 (312)
21 PRK00805 putative deoxyhypusin 49.7 14 0.0003 34.3 2.6 74 93-181 46-127 (329)
22 PRK03971 putative deoxyhypusin 48.5 19 0.00042 33.5 3.4 73 92-181 65-146 (334)
23 COG1899 DYS1 Deoxyhypusine syn 47.7 9.8 0.00021 35.5 1.3 81 85-179 46-134 (318)
24 PRK00770 deoxyhypusine synthas 41.4 26 0.00057 33.2 3.1 75 93-180 51-133 (384)
25 PF13558 SbcCD_C: Putative exo 39.2 18 0.00039 26.5 1.4 34 148-182 41-74 (90)
26 PRK02492 deoxyhypusine synthas 38.5 27 0.00058 32.7 2.7 70 93-179 58-139 (347)
27 PRK00132 rpsI 30S ribosomal pr 38.4 1.2E+02 0.0025 24.7 6.0 70 83-159 8-89 (130)
28 cd01209 SHC SHC phosphotyrosin 37.0 16 0.00035 31.0 0.9 69 90-160 73-156 (160)
29 COG1255 Uncharacterized protei 36.4 47 0.001 27.5 3.5 29 102-132 13-41 (129)
30 cd01267 CED6_AIDA1b Phosphotyr 32.7 51 0.0011 25.6 3.0 70 92-161 45-128 (132)
31 cd01208 X11 X11 Phosphotyrosin 29.8 76 0.0017 26.9 3.8 36 91-126 49-84 (156)
32 COG2100 Predicted Fe-S oxidore 29.7 48 0.001 32.0 2.8 73 95-184 160-232 (414)
33 PF09918 DUF2148: Uncharacteri 28.0 39 0.00084 25.3 1.6 17 145-161 10-26 (69)
34 cd01273 CED-6 CED-6 Phosphotyr 27.4 35 0.00076 27.2 1.3 69 92-161 55-137 (142)
35 cd04483 hOBFC1_like hOBFC1_lik 27.0 94 0.002 23.2 3.5 21 85-106 7-27 (92)
36 PF00762 Ferrochelatase: Ferro 27.0 79 0.0017 28.5 3.6 57 113-177 241-297 (316)
37 CHL00079 rps9 ribosomal protei 21.8 4.3E+02 0.0094 21.5 6.6 51 83-137 7-70 (130)
38 TIGR03627 arch_S9P archaeal ri 21.6 4.4E+02 0.0095 21.4 6.6 71 83-160 4-86 (130)
39 PF13757 VIT_2: Vault protein 20.8 94 0.002 23.4 2.4 23 171-193 46-70 (78)
No 1
>PLN02800 imidazoleglycerol-phosphate dehydratase
Probab=100.00 E-value=2.7e-61 Score=421.23 Aligned_cols=160 Identities=71% Similarity=0.957 Sum_probs=141.3
Q ss_pred eecccccccccccccchhhccch-------hhhcccccCCccCCCCCCCCCCCCCcccCCCCCCCceEEEEeeeCCeEEE
Q 029253 23 LVKPKTNLSRKLLPISTQYCSST-------RRMNSLTTPRASLNPDGDSKHNNGSASTSSAVDSGRIGEVKRVTKETNVS 95 (196)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~a~i~R~TkET~I~ 95 (196)
++||+++ ++.+.|.++.+.++. ++++. +++++++|++ ..+++...+|+++++|+||||+|+
T Consensus 12 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~R~a~v~R~TkET~I~ 79 (261)
T PLN02800 12 LLRPKLS-FIDLLPRRAAIVSSPSSSLPRFLRMES--QLRQSISCAA---------SSSSSNALGRIGEVKRVTKETNVS 79 (261)
T ss_pred hcCCCcc-ccccccccccccccccccccccccccc--ccCCCccccc---------ccCCCCccceeEEEEecccceEEE
Confidence 4789998 888888887766553 33443 4556666655 333444467999999999999999
Q ss_pred EEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHHHhcCCccccceecceec
Q 029253 96 VKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTA 175 (196)
Q Consensus 96 V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~qALGdk~GI~RyG~a~v 175 (196)
|+|||||+|+++|+||||||||||++|++||+|||+|+|+||+|||+||++||+||+|||||+||||||+||+|||++++
T Consensus 80 v~l~LDG~G~~~i~TGi~FlDHML~~~a~Hg~fdL~V~a~GDl~vD~HHtvEDvgI~LG~Al~~ALGdk~GI~RyG~a~v 159 (261)
T PLN02800 80 VKINLDGTGVADSSTGIPFLDHMLDQLASHGLFDVHVKATGDLWIDDHHTNEDVALAIGTALLKALGDRKGINRFGDFSA 159 (261)
T ss_pred EEEEeCCCCceeeecCccHHHHHHHHHHHHcCCCeEEEEecCccccCCCchhhhhhhHHHHHHHHhcCccccceeEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeEEEccCceee
Q 029253 176 PLDEALIHVSLVCLFHILL 194 (196)
Q Consensus 176 PMDEALa~vavDlSG~~~~ 194 (196)
||||||++|+||||||-.+
T Consensus 160 PMDEALa~vavDlSGRpyl 178 (261)
T PLN02800 160 PLDEALIEVVLDLSGRPYL 178 (261)
T ss_pred cccceeEEEEEECCCCCce
Confidence 9999999999999999765
No 2
>COG0131 HisB Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-59 Score=392.05 Aligned_cols=117 Identities=51% Similarity=0.809 Sum_probs=114.5
Q ss_pred CCceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHH
Q 029253 79 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALL 158 (196)
Q Consensus 79 ~~R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~ 158 (196)
.+|++++.|+|+||+|+|+|||||+|+++|+||||||||||+||++||+|||+|+|+||++||+|||+||+||+|||||+
T Consensus 2 ~~R~a~v~R~T~ET~I~V~i~lDg~G~~~i~TGv~FfDHML~~~a~H~~~dl~V~a~GDl~iDdHHtvED~gIaLGqAl~ 81 (195)
T COG0131 2 AMRTAEVTRKTKETDIEVSLDLDGTGKSKIDTGVGFFDHMLDQLARHGGFDLEVSAKGDLHIDDHHTVEDTGIALGQALK 81 (195)
T ss_pred CCceeEEEecccceEEEEEEEcCCCCceeecCCCchHHHHHHHHHHhCCCceEEEEccCccccccchHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCccccceecceecccccceeeeEEEccCceeec
Q 029253 159 QALGDRKGINRFGDFTAPLDEALIHVSLVCLFHILLI 195 (196)
Q Consensus 159 qALGdk~GI~RyG~a~vPMDEALa~vavDlSG~~~~~ 195 (196)
||||||+||+|||.+++||||||++|+||||||-.+.
T Consensus 82 ~AlGdk~GI~Rfg~~~vPMDEaL~~~~vDlSGRp~lv 118 (195)
T COG0131 82 EALGDKRGIRRFGSAYVPMDEALARVAVDLSGRPYLV 118 (195)
T ss_pred HHhcccccceecccccccchhhhheeEEecCCCeeEE
Confidence 9999999999999999999999999999999998763
No 3
>PRK13598 hisB imidazoleglycerol-phosphate dehydratase; Provisional
Probab=100.00 E-value=3.7e-58 Score=387.52 Aligned_cols=115 Identities=39% Similarity=0.552 Sum_probs=113.0
Q ss_pred ceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHHHh
Q 029253 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQA 160 (196)
Q Consensus 81 R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~qA 160 (196)
|+++++|+||||+|+|+|||||+|+++|+||||||||||++|++||+|||+|+|+||++||+||++||+||+|||||+||
T Consensus 3 R~a~i~R~T~ET~I~v~l~Ldg~g~~~i~TGi~FlDHML~~~a~H~~~dL~v~a~GDl~vD~HHtvEDvgI~LG~al~~A 82 (193)
T PRK13598 3 RNANITRETKETKIEVFLDIDRKGEIKVSTPVPFFNHMLITLLTYMNSTATVSATDKLPYDDHHIVEDVAITLGLAIKEA 82 (193)
T ss_pred ceEEEEEcccceEEEEEEEeCCCCceEEecCCchHHHHHHHHHHHcCCCeEEEEecCccccCCCchhhhhhhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccceecceecccccceeeeEEEccCceeec
Q 029253 161 LGDRKGINRFGDFTAPLDEALIHVSLVCLFHILLI 195 (196)
Q Consensus 161 LGdk~GI~RyG~a~vPMDEALa~vavDlSG~~~~~ 195 (196)
||||+||+|||++++||||||++|+||||||-.+.
T Consensus 83 lgdk~gI~RyG~a~vPMDEaLa~~~vDlsGRpylv 117 (193)
T PRK13598 83 LGDKRGIKRFSHQIIPMDEALVLVSLDISGRGMAF 117 (193)
T ss_pred hcCcccceeeecceecchheeeEEEEEcCCCCeEE
Confidence 99999999999999999999999999999998753
No 4
>PRK00951 hisB imidazoleglycerol-phosphate dehydratase; Validated
Probab=100.00 E-value=3.9e-58 Score=387.72 Aligned_cols=115 Identities=56% Similarity=0.869 Sum_probs=113.2
Q ss_pred CceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHHH
Q 029253 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQ 159 (196)
Q Consensus 80 ~R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~q 159 (196)
+|+++++|+|+||+|+|+|||||+|+++|+||||||||||++|++||+|||+|+|+||++||+||++||+||+|||||+|
T Consensus 2 ~R~a~v~R~T~ET~I~v~l~LDG~g~~~i~TGi~FlDHML~~~a~H~~~dL~v~a~GDl~vD~HHtvEDvgI~LG~al~~ 81 (195)
T PRK00951 2 MRTAEVERKTKETDISVELNLDGTGKSDIDTGVGFLDHMLDQFARHGLFDLTVKAKGDLHIDDHHTVEDVGIVLGQALKE 81 (195)
T ss_pred CceEEEEEcccceEEEEEEEeCCCCccceeCCccHHHHHHHHHHHHcCCCeEEEEecCccccCCchHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccceecceecccccceeeeEEEccCceee
Q 029253 160 ALGDRKGINRFGDFTAPLDEALIHVSLVCLFHILL 194 (196)
Q Consensus 160 ALGdk~GI~RyG~a~vPMDEALa~vavDlSG~~~~ 194 (196)
|||||+||+|||++++||||||++|+||||||-.+
T Consensus 82 aLgdk~GI~Ryg~a~~PMDEaL~~v~vDlSGRpyl 116 (195)
T PRK00951 82 ALGDKKGIRRYGHAYVPMDEALARVAVDLSGRPYL 116 (195)
T ss_pred HhcCccccceeEeeeechhheeEEEEEECCCCCeE
Confidence 99999999999999999999999999999999875
No 5
>cd07914 IGPD Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and s
Probab=100.00 E-value=5.9e-57 Score=379.34 Aligned_cols=112 Identities=49% Similarity=0.798 Sum_probs=109.9
Q ss_pred EEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHHHhcC
Q 029253 83 GEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALG 162 (196)
Q Consensus 83 a~i~R~TkET~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~qALG 162 (196)
++++|+|+||+|+|+|||||+|+++|+||||||||||++|++||+|||+|+|+||++||+|||+||+||+|||||+||||
T Consensus 1 a~v~R~T~ET~I~v~l~LDg~g~~~i~TGi~FlDHML~~~a~H~~~dL~v~a~GDl~vD~HHtvEDvgI~LG~al~~aLg 80 (190)
T cd07914 1 AEIERKTKETDIEVELNLDGTGKSKIDTGIGFFDHMLTLFARHGGFDLTVKAKGDLEVDDHHTVEDVGIVLGQALKKALG 80 (190)
T ss_pred CeeEecccceEEEEEEEeCCCCccceecCCcHHHHHHHHHHHHcCCCeEEEEecCccccCCcchhhhHhhHHHHHHHHhc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceecceecccccceeeeEEEccCceee
Q 029253 163 DRKGINRFGDFTAPLDEALIHVSLVCLFHILL 194 (196)
Q Consensus 163 dk~GI~RyG~a~vPMDEALa~vavDlSG~~~~ 194 (196)
||+||+|||++++||||||++|+||||||-.+
T Consensus 81 dk~GI~RyG~a~~PMDEal~~v~vDlsGRp~l 112 (190)
T cd07914 81 DKKGIRRYGSALVPMDEALARVAVDLSGRPYL 112 (190)
T ss_pred CccccceeEccccccchhheEEEEECCCCCeE
Confidence 99999999999999999999999999999775
No 6
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=100.00 E-value=5.4e-53 Score=378.70 Aligned_cols=116 Identities=47% Similarity=0.728 Sum_probs=113.2
Q ss_pred CCCceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHH
Q 029253 78 DSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL 157 (196)
Q Consensus 78 ~~~R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL 157 (196)
..+|+++++|+|+||+|+|+|||||+|+++|+||||||||||++|++||+|||+|+|+||++||+||++||+||+|||||
T Consensus 163 ~~~r~~~~~R~t~et~i~~~l~ldg~g~~~i~tgi~f~dhml~~~~~h~~~~l~v~~~gd~~vd~hh~~ed~~i~lG~a~ 242 (354)
T PRK05446 163 KRDRYAHVVRNTKETDIDVEVWLDREGKSKINTGIGFFDHMLDQIATHGGFRLEIKVKGDLHIDDHHTVEDTALALGEAL 242 (354)
T ss_pred cCCceEEEEecccceEEEEEEEeCCCCceeeecCCcHHHHHHHHHHHHcCCCeEEEEecCccccCCchHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccccceecceecccccceeeeEEEccCceee
Q 029253 158 LQALGDRKGINRFGDFTAPLDEALIHVSLVCLFHILL 194 (196)
Q Consensus 158 ~qALGdk~GI~RyG~a~vPMDEALa~vavDlSG~~~~ 194 (196)
++|||||+||+|||+ ++||||||++|+||+|||-.+
T Consensus 243 ~~alg~~~gi~r~g~-~~pmdeal~~~~~d~sgr~~~ 278 (354)
T PRK05446 243 KQALGDKRGIGRFGF-VLPMDECLARCALDISGRPYL 278 (354)
T ss_pred HHHhcCccccceeee-ccchhheeeEEEEECCCCCee
Confidence 999999999999999 999999999999999999765
No 7
>PF00475 IGPD: Imidazoleglycerol-phosphate dehydratase; InterPro: IPR000807 Imidazoleglycerol-phosphate dehydratase is the enzyme that catalyses the seventh step in the biosynthesis of histidine in bacteria, fungi and plants. In most organisms it is a monofunctional protein of about 22 to 29 kD. In some bacteria such as Escherichia coli, it is the C-terminal domain of a bifunctional protein that include a histidinol-phosphatase domain [].; GO: 0004424 imidazoleglycerol-phosphate dehydratase activity, 0000105 histidine biosynthetic process; PDB: 2F1D_G 2AE8_A 1RHY_B.
Probab=100.00 E-value=6e-46 Score=301.90 Aligned_cols=86 Identities=55% Similarity=0.883 Sum_probs=75.6
Q ss_pred cCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHHHhcCCccccceecceecccccceeeeEEEcc
Q 029253 110 TCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLVCL 189 (196)
Q Consensus 110 TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~qALGdk~GI~RyG~a~vPMDEALa~vavDlS 189 (196)
||||||||||+||++||+|||+|+|+||++||+|||+||+||+|||||+||||||+||+|||++++||||||++|+||+|
T Consensus 1 TGi~F~DHML~~la~h~~~dl~v~a~GDl~vD~HHtvEDvgI~LG~al~~aLgdk~GI~Ryg~a~~PMDEaL~~v~vDls 80 (145)
T PF00475_consen 1 TGIGFFDHMLEQLAKHGGFDLSVKAKGDLEVDDHHTVEDVGIVLGQALRQALGDKRGINRYGSASVPMDEALARVAVDLS 80 (145)
T ss_dssp -S-HHHHHHHHHHHHHHT-EEEEEEEC-TTT-CHHHHHHHHHHHHHHHHHHHTT-TTB--EEEEEEEETTEEEEEEEEES
T ss_pred CCCchHHHHHHHHHHHCCCCEEEEEeCCCCcCcceehhhHHHHHHHHHHHHhccccCceeeeccccchhhhhheeEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceeec
Q 029253 190 FHILLI 195 (196)
Q Consensus 190 G~~~~~ 195 (196)
||-.+.
T Consensus 81 GRp~l~ 86 (145)
T PF00475_consen 81 GRPYLV 86 (145)
T ss_dssp SS-EEE
T ss_pred CCceEE
Confidence 997753
No 8
>KOG3143 consensus Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-45 Score=311.78 Aligned_cols=135 Identities=57% Similarity=0.773 Sum_probs=127.2
Q ss_pred hhhhcccccCCccCCCCCCCCCCCCCcccCCCCCCCceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHh
Q 029253 45 TRRMNSLTTPRASLNPDGDSKHNNGSASTSSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLAS 124 (196)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~ 124 (196)
.+.|+++.+.+.++.|+. ...+.++..|+|+||.+++..|+||.+.+.++|||||||||+++||+
T Consensus 6 alV~r~tnetkisiaial---------------d~apl~ee~~~~~E~~~s~~anq~g~qVi~v~TGIgFLDHM~haLAk 70 (219)
T KOG3143|consen 6 ALVMRSTNETKISIAIAL---------------DNAPLGEEKRETKETNVSVKANQDGHQVIDVSTGIGFLDHMLHALAK 70 (219)
T ss_pred hHHhcccccccceEEEec---------------CCCccchhhccccchhheeeecccCceeeecccCcchHHHHHHHHHh
Confidence 477899999999999953 23366778999999999999999999999999999999999999999
Q ss_pred hcCcceEEEEecCccccCCcchhhhhhhHHHHHHHhcCCccccceecceecccccceeeeEEEccCceee
Q 029253 125 HGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLVCLFHILL 194 (196)
Q Consensus 125 H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~qALGdk~GI~RyG~a~vPMDEALa~vavDlSG~~~~ 194 (196)
||||+|.++|.||++||||||.||+||+||+||+||||+++|++|||.++.|+||||.+++||+|||-++
T Consensus 71 H~gwsl~v~~~GDlhIDDHHT~ED~aiAlG~Afk~AlG~~~GvkRFG~~~aPLDEALsr~vvDLSgRPYa 140 (219)
T KOG3143|consen 71 HGGWSLHVRATGDLHIDDHHTNEDVAIALGTAFKKALGERKGVKRFGDFTAPLDEALSRVVVDLSGRPYA 140 (219)
T ss_pred cCCceEEEEecCceeecccccchhHHHHHHHHHHHHHhhhhchhhcccccCcHHHHHhHheeccCCCeeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999765
No 9
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.61 E-value=0.00016 Score=66.12 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=66.0
Q ss_pred ceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhh
Q 029253 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVG 150 (196)
Q Consensus 81 R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIg----------FlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvG 150 (196)
|-+. .=---|+-+.|.|++-|++-...+.+.+ -+.|.+..|+.++++.|.|+..|+ ++||.+|-+.
T Consensus 254 r~g~-~~pmdeal~~~~~d~sgr~~~~~~~~~~~~~~g~~~~e~~~~f~~~~~~~~~~tlh~~~~g~---n~hh~~ea~f 329 (354)
T PRK05446 254 RFGF-VLPMDECLARCALDISGRPYLVFKAEFKRERVGDMSTEMVEHFFRSLSDAMGCTLHLKTKGK---NDHHKVESLF 329 (354)
T ss_pred eeee-ccchhheeeEEEEECCCCCeeEEccCCCccccCCCCchHHHHHHHHHHhcCCCEEEEEeccC---ChHHHHHHHH
Confidence 5555 4567899999999999988655544332 478999999999999999998886 7899999999
Q ss_pred hhHHHHHHHhcC
Q 029253 151 LAIGTALLQALG 162 (196)
Q Consensus 151 IaLGqAL~qALG 162 (196)
-++|.||++|+.
T Consensus 330 Ka~~~al~~a~~ 341 (354)
T PRK05446 330 KAFGRALRQAIR 341 (354)
T ss_pred HHHHHHHHHHhc
Confidence 999999999995
No 10
>PLN02800 imidazoleglycerol-phosphate dehydratase
Probab=97.57 E-value=0.00025 Score=63.44 Aligned_cols=79 Identities=27% Similarity=0.456 Sum_probs=66.7
Q ss_pred ceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEE--ecCccccCCcchhh
Q 029253 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRA--TGDIHIDDHHTNED 148 (196)
Q Consensus 81 R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIg----------FlDHML~~~a~H~g~dL~I~A--~GDl~VDdHHtvED 148 (196)
|.+...--=.|+-+.|.|+|-|.+-...+.+++ -+.|++..|+.++++.|.|++ .|+ ++||.+|-
T Consensus 153 RyG~a~vPMDEALa~vavDlSGRpylv~~~~~~~~~iG~~~telv~hFf~s~a~~a~~tLHi~~l~~G~---N~HH~~EA 229 (261)
T PLN02800 153 RFGDFSAPLDEALIEVVLDLSGRPYLGYNLEIPTERVGDLDTEMVEHFFQSLVNNSGMTVHIRQLAAGK---NSHHIIEA 229 (261)
T ss_pred eeEeeeecccceeEEEEEECCCCCceeecCCCCccccCCCchHHHHHHHHHHHhcCCCEEEEEecccCC---cHHHHHHH
Confidence 566666667899999999999987655544332 378999999999999999987 686 67999999
Q ss_pred hhhhHHHHHHHhcC
Q 029253 149 VGLAIGTALLQALG 162 (196)
Q Consensus 149 vGIaLGqAL~qALG 162 (196)
+.-++|.||++|+.
T Consensus 230 ~FKAfgrALr~A~~ 243 (261)
T PLN02800 230 TAKAFGRALRQCAE 243 (261)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999995
No 11
>PRK13598 hisB imidazoleglycerol-phosphate dehydratase; Provisional
Probab=97.53 E-value=0.00024 Score=61.07 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=63.5
Q ss_pred ceEEEEeeeCCeEEEEEEEeCCCceeeeecCC----------ccHHHHHHHHHhhcCcceEEE-EecCccccCCcchhhh
Q 029253 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCI----------PFLDHMLDQLASHGLFDVHVR-ATGDIHIDDHHTNEDV 149 (196)
Q Consensus 81 R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGI----------gFlDHML~~~a~H~g~dL~I~-A~GDl~VDdHHtvEDv 149 (196)
|-+...=-=.|+-+.+.|+|-|++-+..+-+. .-+.|.+..|+.++++.|.|+ ..|+ ++||.+|-+
T Consensus 91 RyG~a~vPMDEaLa~~~vDlsGRpylv~~~~~~~~~iG~~~~elv~~Ff~s~a~~a~~tlHi~~~~G~---N~HH~~EA~ 167 (193)
T PRK13598 91 RFSHQIIPMDEALVLVSLDISGRGMAFVNLNLKRSEIGGLATENIPHFFQSFAYNSGVTLHISQLSGY---NTHHIIEAS 167 (193)
T ss_pred eeecceecchheeeEEEEEcCCCCeEEEccccCccccCCCchhhHHHHHHHHHhcCCCeEEEEEccCC---ChHHHHHHH
Confidence 33333334579999999999998765554332 236799999999999999997 6786 789999999
Q ss_pred hhhHHHHHHHhcC
Q 029253 150 GLAIGTALLQALG 162 (196)
Q Consensus 150 GIaLGqAL~qALG 162 (196)
--++|.||++|+.
T Consensus 168 FKA~g~ALr~A~~ 180 (193)
T PRK13598 168 FKGLGLALYEATR 180 (193)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999995
No 12
>cd07914 IGPD Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and s
Probab=97.51 E-value=0.00029 Score=60.42 Aligned_cols=79 Identities=23% Similarity=0.317 Sum_probs=65.2
Q ss_pred ceEEEEeeeCCeEEEEEEEeCCCceeeeecCC----------ccHHHHHHHHHhhcCcceEEE-EecCccccCCcchhhh
Q 029253 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCI----------PFLDHMLDQLASHGLFDVHVR-ATGDIHIDDHHTNEDV 149 (196)
Q Consensus 81 R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGI----------gFlDHML~~~a~H~g~dL~I~-A~GDl~VDdHHtvEDv 149 (196)
|.+...--=-|+-+.+.|++-|++-...+.+. --+.|.+..|+.++++.|.|+ ..|+ ++||.+|-+
T Consensus 87 RyG~a~~PMDEal~~v~vDlsGRp~l~~~~~~~~~~iG~~~telv~~Ff~s~a~~a~~tlHi~~~~G~---N~HH~~Ea~ 163 (190)
T cd07914 87 RYGSALVPMDEALARVAVDLSGRPYLVFDAEFPREKIGDFDTELVEEFFRSFANNAGITLHIRVLYGR---NDHHIIEAI 163 (190)
T ss_pred eeEccccccchhheEEEEECCCCCeEEEecCcCcCccCCCChHHHHHHHHHHHhcCCCeEEEEEeecC---ChHHHHHHH
Confidence 55554555678999999999998765555332 247899999999999999997 7786 789999999
Q ss_pred hhhHHHHHHHhcC
Q 029253 150 GLAIGTALLQALG 162 (196)
Q Consensus 150 GIaLGqAL~qALG 162 (196)
--+||.||++|+.
T Consensus 164 FKalgrALr~A~~ 176 (190)
T cd07914 164 FKAFARALRQAVA 176 (190)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999995
No 13
>PRK00951 hisB imidazoleglycerol-phosphate dehydratase; Validated
Probab=97.40 E-value=0.0007 Score=58.31 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=67.1
Q ss_pred CceEEEEeeeCCeEEEEEEEeCCCceeeeecCC----------ccHHHHHHHHHhhcCcceEEE-EecCccccCCcchhh
Q 029253 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCI----------PFLDHMLDQLASHGLFDVHVR-ATGDIHIDDHHTNED 148 (196)
Q Consensus 80 ~R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGI----------gFlDHML~~~a~H~g~dL~I~-A~GDl~VDdHHtvED 148 (196)
.|.+...--=-|+-+.+.|++-|++-...+-+. .-+.|.+..|+.++++.|.|+ ..|+ ++||.+|-
T Consensus 90 ~Ryg~a~~PMDEaL~~v~vDlSGRpyl~~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tlHi~~~~G~---N~HH~~Ea 166 (195)
T PRK00951 90 RRYGHAYVPMDEALARVAVDLSGRPYLVFDVEFTREKIGTFDTELVREFFEAFANNAGITLHIRVLYGR---NAHHIIEA 166 (195)
T ss_pred ceeEeeeechhheeEEEEEECCCCCeEEEecCCCccccCCCchHHHHHHHHHHHhcCCCeEEEEecccC---ChHHHHHH
Confidence 366666667789999999999998765554332 247899999999999999997 6786 78999999
Q ss_pred hhhhHHHHHHHhcC
Q 029253 149 VGLAIGTALLQALG 162 (196)
Q Consensus 149 vGIaLGqAL~qALG 162 (196)
+--++|.||++|+.
T Consensus 167 ~FKa~g~ALr~A~~ 180 (195)
T PRK00951 167 LFKAFARALRMAVE 180 (195)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999995
No 14
>PF00475 IGPD: Imidazoleglycerol-phosphate dehydratase; InterPro: IPR000807 Imidazoleglycerol-phosphate dehydratase is the enzyme that catalyses the seventh step in the biosynthesis of histidine in bacteria, fungi and plants. In most organisms it is a monofunctional protein of about 22 to 29 kD. In some bacteria such as Escherichia coli, it is the C-terminal domain of a bifunctional protein that include a histidinol-phosphatase domain [].; GO: 0004424 imidazoleglycerol-phosphate dehydratase activity, 0000105 histidine biosynthetic process; PDB: 2F1D_G 2AE8_A 1RHY_B.
Probab=97.39 E-value=0.001 Score=55.07 Aligned_cols=76 Identities=26% Similarity=0.419 Sum_probs=61.5
Q ss_pred CceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEEe-cCccccCCcchhh
Q 029253 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRAT-GDIHIDDHHTNED 148 (196)
Q Consensus 80 ~R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIg----------FlDHML~~~a~H~g~dL~I~A~-GDl~VDdHHtvED 148 (196)
.|.+...---.|+-+.|.|++-|++-...+-+.+ -+.|.+..|+.++++.|.|++. |+ ++||.+|-
T Consensus 59 ~Ryg~a~~PMDEaL~~v~vDlsGRp~l~~~~~~~~~~iG~~~~el~~~F~~sla~~~~~tlHi~~~~G~---N~HH~~Ea 135 (145)
T PF00475_consen 59 NRYGSASVPMDEALARVAVDLSGRPYLVFNGEFPREKIGDFDTELVEHFFRSLANNAGITLHIRVLYGE---NDHHIIEA 135 (145)
T ss_dssp --EEEEEEEETTEEEEEEEEESSS-EEEEE---SSSEETTEETTHHHHHHHHHHHHHTEEEEEEEEE-S---SHHHHHHH
T ss_pred eeeeccccchhhhhheeEEEecCCceEEEecccCccccCCCChhhHHHHHHHHHHhCCceEEEEEEeCC---ChHHHHHH
Confidence 3778888889999999999999987665554443 3789999999999999999998 85 67999999
Q ss_pred hhhhHHHHHH
Q 029253 149 VGLAIGTALL 158 (196)
Q Consensus 149 vGIaLGqAL~ 158 (196)
+--++|+||+
T Consensus 136 ~FKa~grALR 145 (145)
T PF00475_consen 136 IFKAFGRALR 145 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999999985
No 15
>COG0131 HisB Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0022 Score=55.47 Aligned_cols=72 Identities=24% Similarity=0.305 Sum_probs=58.2
Q ss_pred eCCeEEEEEEEeCCCceeeeecC----------CccHHHHHHHHHhhcCcceEEEE-ecCccccCCcchhhhhhhHHHHH
Q 029253 89 TKETNVSVKINVDGSGVADSSTC----------IPFLDHMLDQLASHGLFDVHVRA-TGDIHIDDHHTNEDVGLAIGTAL 157 (196)
Q Consensus 89 TkET~I~V~LnLDG~G~~~I~TG----------IgFlDHML~~~a~H~g~dL~I~A-~GDl~VDdHHtvEDvGIaLGqAL 157 (196)
-.|+-..+.+++-|+.-...+-. .--+-|.+..||.|+++.|.+++ .|+ ++||-+|-+-=++|.||
T Consensus 100 MDEaL~~~~vDlSGRp~lv~~~~f~~~~vG~~~te~v~hFf~sla~~a~itlHi~~~~G~---N~HH~iEa~FKA~arAL 176 (195)
T COG0131 100 MDEALARVAVDLSGRPYLVFNAEFTREKVGDFDTELVEHFFRSLANNAGITLHLSVLYGK---NDHHIIEALFKAFARAL 176 (195)
T ss_pred chhhhheeEEecCCCeeEEEecccCccccCCcchhhHHHHHHHHHHhcCcEEEEEeccCC---ChHHHHHHHHHHHHHHH
Confidence 46888888999888754332221 12467999999999999999999 875 68999999999999999
Q ss_pred HHhcCC
Q 029253 158 LQALGD 163 (196)
Q Consensus 158 ~qALGd 163 (196)
++|+--
T Consensus 177 r~A~~i 182 (195)
T COG0131 177 RQAVEI 182 (195)
T ss_pred HHHhcc
Confidence 999843
No 16
>KOG3143 consensus Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism]
Probab=89.77 E-value=0.66 Score=40.64 Aligned_cols=75 Identities=27% Similarity=0.340 Sum_probs=60.2
Q ss_pred eeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHH
Q 029253 88 VTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL 157 (196)
Q Consensus 88 ~TkET~I~V~LnLDG~G~~~I~TGIg----------FlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL 157 (196)
--.|.-+.+.++|.|+--..++-|++ ..-|.|..|+.-+|+.|.|+|--- -++||.+|-.--+|-.|+
T Consensus 122 PLDEALsr~vvDLSgRPYav~~Lgl~rekVG~lscemipHfl~Sf~~asgiTLHv~cL~G--kNdHHr~EsaFKalAvAl 199 (219)
T KOG3143|consen 122 PLDEALSRVVVDLSGRPYAVYNLGLPREKVGTLSCEMIPHFLQSFVNASGITLHVRCLAG--KNDHHRIESAFKALAVAL 199 (219)
T ss_pred cHHHHHhHheeccCCCeeEEEecCCchhhcccchHhhHHHHHHHHHhhcCcEEEEEeecC--CCchhHHHHHHHHHHHHH
Confidence 34566677888888876666666664 467999999999999999998532 467999999999999999
Q ss_pred HHhcCCc
Q 029253 158 LQALGDR 164 (196)
Q Consensus 158 ~qALGdk 164 (196)
+||-..+
T Consensus 200 R~ATsp~ 206 (219)
T KOG3143|consen 200 RQATSPR 206 (219)
T ss_pred HHhcCCC
Confidence 9997644
No 17
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=59.63 E-value=11 Score=34.46 Aligned_cols=68 Identities=26% Similarity=0.472 Sum_probs=50.7
Q ss_pred EEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHH-----------HHHHHhcCC
Q 029253 95 SVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIG-----------TALLQALGD 163 (196)
Q Consensus 95 ~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLG-----------qAL~qALGd 163 (196)
.|-|.+-|. -+.+|++ ..+..|.+|+-+|+-|.--|-+ .||+.=++| ..|+
T Consensus 47 ~ifLt~tg~---mvsaGlr---~ii~~Li~~g~Vd~ivtTganl-------~hD~~~~~g~~~~g~f~~dd~~Lr----- 108 (301)
T TIGR00321 47 TIFMGYAGN---LVPSGMR---EIIAYLIQHGMIDALVTTGANL-------EHDLIEALGPTHLGDFAVDDKKLR----- 108 (301)
T ss_pred eEEEEeccc---cchhhHH---HHHHHHHHcCCeeEEEeCCCch-------HHHHHHHcCcccccCCCCChHHHH-----
Confidence 335555554 3788886 8899999999999999988865 345555554 3333
Q ss_pred ccccceecceecccccce
Q 029253 164 RKGINRFGDFTAPLDEAL 181 (196)
Q Consensus 164 k~GI~RyG~a~vPMDEAL 181 (196)
++||+|-|.-++|- |++
T Consensus 109 ~~ginRI~dv~ip~-e~y 125 (301)
T TIGR00321 109 EEGINRIGDVFVPN-ENF 125 (301)
T ss_pred HcCCCccceecCCH-HHH
Confidence 57999999999995 555
No 18
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=50.47 E-value=35 Score=27.05 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHHH
Q 029253 113 PFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQ 159 (196)
Q Consensus 113 gFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~q 159 (196)
|.++.+|..++..|-=.+.|-+-|= -.|..||.+|+.+-..+.+.+
T Consensus 77 P~~~~~l~~l~~~G~~~i~v~p~gF-~~D~~Etl~di~~e~~~~~~~ 122 (135)
T cd00419 77 PSTDDALEELAKEGVKNVVVVPIGF-VSDHLETLYELDIEYRELAEE 122 (135)
T ss_pred CCHHHHHHHHHHcCCCeEEEECCcc-ccccHHHHHHHHHHHHHHHHH
Confidence 6689999999998777777777772 234459999999999987764
No 19
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=50.46 E-value=13 Score=34.36 Aligned_cols=75 Identities=25% Similarity=0.342 Sum_probs=53.4
Q ss_pred eEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHH--------HHhcCC
Q 029253 92 TNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL--------LQALGD 163 (196)
Q Consensus 92 T~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL--------~qALGd 163 (196)
.+..+.|.+-|+ -+++|++ ..+..|.+|+-+|+-|.--|-+ .||+.=++|... .+.|-
T Consensus 56 ~~~~ifL~~tg~---mvsaGlr---~ii~~Li~~~~VD~iVtTgani-------ehD~~~~lg~~~y~G~~~~dd~~Lr- 121 (316)
T PRK02301 56 DDVTKFFGLAGA---MVPAGMR---GIVSDLIRDGHIDVLVTTGANL-------THDVIEAIGGHHHHGTAHAHDEELR- 121 (316)
T ss_pred CCCeEEEEcccc---hhHHHHH---HHHHHHHHcCCeeEEEcCCCch-------HHHHHHHcCCCeeccCCCCCHHHHH-
Confidence 444456666554 3688886 8999999999999999988865 457776776211 12221
Q ss_pred ccccceecceecccccce
Q 029253 164 RKGINRFGDFTAPLDEAL 181 (196)
Q Consensus 164 k~GI~RyG~a~vPMDEAL 181 (196)
++||+|-|.-++|- |++
T Consensus 122 ~~ginRIgd~~ip~-e~y 138 (316)
T PRK02301 122 DEGIDRIYDVYLPQ-EHF 138 (316)
T ss_pred HcCCCccceeCCCh-HHH
Confidence 57999999999995 554
No 20
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=49.65 E-value=4 Score=37.49 Aligned_cols=72 Identities=22% Similarity=0.415 Sum_probs=52.3
Q ss_pred EEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHH--------HHhcCCccc
Q 029253 95 SVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL--------LQALGDRKG 166 (196)
Q Consensus 95 ~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL--------~qALGdk~G 166 (196)
.+.|.+-|+ -++||+ -..+..|.+|+-+|+-|.--|-+ .||+.=++|... ...| -++|
T Consensus 56 ~ifL~~tg~---mvs~Gl---r~ii~~Li~~~~VD~iVtTgani-------~hD~~~~lg~~~y~G~~~~dd~~L-r~~G 121 (312)
T PRK01221 56 LRFLSFTAN---LVSTGL---RGLIADLIKRGLFNVVITTCGTL-------DHDIARSFGGVYYKGSFDIDDAML-KDLG 121 (312)
T ss_pred eEEEEecch---hHHHHH---HHHHHHHHHcCCeeEEEeCCCch-------HHHHHHHcCCCeEecCCCCChHHH-HHcC
Confidence 556666554 368885 59999999999999999988865 456666665411 1122 1579
Q ss_pred cceecceecccccc
Q 029253 167 INRFGDFTAPLDEA 180 (196)
Q Consensus 167 I~RyG~a~vPMDEA 180 (196)
|+|-|.-++|-|+-
T Consensus 122 inRIgdv~ip~e~y 135 (312)
T PRK01221 122 IHRLGNVLIPVESY 135 (312)
T ss_pred CCcceeeccChHHH
Confidence 99999999997664
No 21
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=49.65 E-value=14 Score=34.34 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=52.6
Q ss_pred EEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHH--------HHhcCCc
Q 029253 93 NVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL--------LQALGDR 164 (196)
Q Consensus 93 ~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL--------~qALGdk 164 (196)
+-.|.|.+-|+ -+++|++ ..+..|.+|+-+|+-|.--|-+ .||+.=++|... .+.|- +
T Consensus 46 ~~~ifL~~tg~---mvsaGlr---~~i~~Li~~g~VD~iVTTgani-------~hD~~~~lg~~~y~g~f~~dd~~Lr-~ 111 (329)
T PRK00805 46 DNTIFMGLSGA---MVPAGMR---KIIKWLIRNRYVDVLVSTGANI-------FHDIHEALGFKHYKGSHHVDDEELF-K 111 (329)
T ss_pred CCeEEEEeccc---hHHHHHH---HHHHHHHHcCCeeEEEeCCCch-------HHHHHHHcCCCeeccCCCCCHHHHH-H
Confidence 34446666554 3788886 7999999999999999988865 457766666111 12221 5
Q ss_pred cccceecceecccccce
Q 029253 165 KGINRFGDFTAPLDEAL 181 (196)
Q Consensus 165 ~GI~RyG~a~vPMDEAL 181 (196)
+||+|-|.-++|- |++
T Consensus 112 ~ginRIgdv~ip~-e~y 127 (329)
T PRK00805 112 EGIDRIYDVFAYE-EEF 127 (329)
T ss_pred cCCCcccccccCH-HHH
Confidence 7999999999995 555
No 22
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=48.47 E-value=19 Score=33.46 Aligned_cols=73 Identities=26% Similarity=0.428 Sum_probs=52.9
Q ss_pred eEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHHHhcCC--------
Q 029253 92 TNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGD-------- 163 (196)
Q Consensus 92 T~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~qALGd-------- 163 (196)
.+-.|-|.+-|. -++||++ -.+..|.+|+-+|+-|.--|-+ .||+.=++| ... +|+
T Consensus 65 ~~~~ifL~~tg~---misaGlr---~~i~~Li~~~~Vd~iVtTganl-------ehDi~~~l~-~~~--~G~f~~dd~~L 128 (334)
T PRK03971 65 EEATVFLGYTSN---IVSSGLR---EIIAYLVKEKKVDVIVTTAGGV-------EEDFIKCLK-PFI--LGEWDVDGAEL 128 (334)
T ss_pred CCCeEEEEcccc---ccchhHH---HHHHHHHHcCCeeEEEeCCCch-------HHHHHHHhc-ccc--cCCCCCCHHHH
Confidence 344446666554 4788886 8999999999999999988865 456666665 221 232
Q ss_pred -ccccceecceecccccce
Q 029253 164 -RKGINRFGDFTAPLDEAL 181 (196)
Q Consensus 164 -k~GI~RyG~a~vPMDEAL 181 (196)
++||+|.|.-++|-| ++
T Consensus 129 r~~ginRIgnv~ip~e-~y 146 (334)
T PRK03971 129 REKGINRIGNIFVPND-RY 146 (334)
T ss_pred HHcCCCccceeeeChH-HH
Confidence 579999999999965 44
No 23
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=47.75 E-value=9.8 Score=35.49 Aligned_cols=81 Identities=30% Similarity=0.476 Sum_probs=57.9
Q ss_pred EEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHH-------
Q 029253 85 VKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL------- 157 (196)
Q Consensus 85 i~R~TkET~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL------- 157 (196)
+-|+-.|-++.+.|.+-|+ -|++|+ -+.+..|-+++-+|+-|.--|-+ .||+.=+||-..
T Consensus 46 I~~~m~~~~~tvfl~~tg~---~vssGl---R~iia~LIr~~~idvvVTTgg~l-------~hDi~~~lg~~~~~G~~~~ 112 (318)
T COG1899 46 ILREMLESRVTVFLGLTGN---LVSSGL---REIIADLIRNGLIDVVVTTGGNL-------DHDIIKALGGPHYCGSFEV 112 (318)
T ss_pred HHHHHHhhcCEEEEecccc---ccchhH---HHHHHHHHHcCCeEEEEecCCch-------hHHHHHHcCCCeeccCcCC
Confidence 3334444446666666654 478887 69999999999999999999864 678888888211
Q ss_pred -HHhcCCccccceecceeccccc
Q 029253 158 -LQALGDRKGINRFGDFTAPLDE 179 (196)
Q Consensus 158 -~qALGdk~GI~RyG~a~vPMDE 179 (196)
...|- ..||+|-|..++|-|+
T Consensus 113 dD~~Lr-~~gi~RIgnv~vp~e~ 134 (318)
T COG1899 113 DDVELR-EEGINRIGNVFVPNEE 134 (318)
T ss_pred CHHHHH-HhccccccceecChHH
Confidence 11222 4699999999999765
No 24
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=41.44 E-value=26 Score=33.18 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=51.8
Q ss_pred EEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHH--------HHhcCCc
Q 029253 93 NVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL--------LQALGDR 164 (196)
Q Consensus 93 ~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL--------~qALGdk 164 (196)
+..|.|.+-|. -|.+|++- -.|..|.+|+-+|+-|.--|-+ .||+..+||-.. ...|- +
T Consensus 51 ~~tvfLtltga---misaGLr~--~ii~~LIr~g~VD~IVTTGAnl-------~hD~~~alg~~~y~G~~~~dd~~Lr-~ 117 (384)
T PRK00770 51 GVTVGLTLSGA---MTPAGFGV--SALAPLIEAGFIDWIISTGANL-------YHDLHYALGLPLFAGHPFVDDVKLR-E 117 (384)
T ss_pred CCcEEEEeccc---hhhhhcCh--HHHHHHHHcCCccEEEcCCccH-------HHHHHHHhCCCcccCCCCCCHHHHH-H
Confidence 33445655554 47888740 2788899999999999888754 678888885111 11111 5
Q ss_pred cccceecceecccccc
Q 029253 165 KGINRFGDFTAPLDEA 180 (196)
Q Consensus 165 ~GI~RyG~a~vPMDEA 180 (196)
+||+|-|..++|-|+.
T Consensus 118 ~GinRI~dv~ip~e~~ 133 (384)
T PRK00770 118 EGIIRIYDIIFDYDVL 133 (384)
T ss_pred cCCCcccccCcChHHH
Confidence 7999999999996654
No 25
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=39.17 E-value=18 Score=26.52 Aligned_cols=34 Identities=26% Similarity=0.167 Sum_probs=25.7
Q ss_pred hhhhhHHHHHHHhcCCccccceecceeccccccee
Q 029253 148 DVGLAIGTALLQALGDRKGINRFGDFTAPLDEALI 182 (196)
Q Consensus 148 DvGIaLGqAL~qALGdk~GI~RyG~a~vPMDEALa 182 (196)
=+.++|.-|+...++...| +.-+.-.+.+|||..
T Consensus 41 ~~~l~l~aal~~~~~~~~~-~~~~~~~l~lDEaF~ 74 (90)
T PF13558_consen 41 PFYLALAAALAALYSSSSG-RGDSPRLLFLDEAFS 74 (90)
T ss_dssp HHHHHHHHHHHHHHHTTST-S-TTBSEEEEESTTT
T ss_pred HHHHHHHHHHHHHHhhhcC-CCCCcCEEEEeCCCC
Confidence 3678889999999988765 444456888999975
No 26
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=38.46 E-value=27 Score=32.72 Aligned_cols=70 Identities=24% Similarity=0.237 Sum_probs=50.6
Q ss_pred EEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHH------------HHHHHh
Q 029253 93 NVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIG------------TALLQA 160 (196)
Q Consensus 93 ~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLG------------qAL~qA 160 (196)
+..+.|.+-|. -+++|++ ..+..|.+|+-+|+-|.--|-+. -||+.=++| ..|+
T Consensus 58 ~~~ifL~~tga---mvsaGlr---~~i~~Li~~~~VD~iVTTganl~------eeD~~k~~g~~~y~G~f~~dd~~Lr-- 123 (347)
T PRK02492 58 ECAVILTLAGS---LSSAGCM---QVYIDLVRNNMVDAIVATGANIV------DQDFFEALGFKHYQGSPFVDDAVLR-- 123 (347)
T ss_pred CCeEEEEeccc---hHHHHHH---HHHHHHHHcCCeeEEEECCCCch------HHHHHHHcCCCeecCCCCCCHHHHH--
Confidence 44446666554 3788887 79999999999999998887531 235554554 3444
Q ss_pred cCCccccceecceeccccc
Q 029253 161 LGDRKGINRFGDFTAPLDE 179 (196)
Q Consensus 161 LGdk~GI~RyG~a~vPMDE 179 (196)
++||+|-|.-++|-|+
T Consensus 124 ---~~ginRIgdv~ip~e~ 139 (347)
T PRK02492 124 ---DLYIDRIYDTYIDEEE 139 (347)
T ss_pred ---HcCCCcccccccChHH
Confidence 5799999999999665
No 27
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed
Probab=38.38 E-value=1.2e+02 Score=24.73 Aligned_cols=70 Identities=26% Similarity=0.328 Sum_probs=40.7
Q ss_pred EEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHH---------H---HHHHHhhcCcceEEEEecCccccCCcchhhhh
Q 029253 83 GEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDH---------M---LDQLASHGLFDVHVRATGDIHIDDHHTNEDVG 150 (196)
Q Consensus 83 a~i~R~TkET~I~V~LnLDG~G~~~I~TGIgFlDH---------M---L~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvG 150 (196)
+.-+|+|.=.. |.+. .|+|++.|+ |.++.+. + |......+.||+.++++|-=. .--.+-+-
T Consensus 8 ~~GrRK~a~A~--v~l~-~G~G~i~IN-g~~~~~yf~~~~~r~~i~~Pl~~~~~~~~~Di~i~V~GGG~---sgQa~Air 80 (130)
T PRK00132 8 GTGRRKTAVAR--VRLK-PGSGKITVN-GRDLEEYFPRETLRMVVRQPLELTETEGKFDVYVTVKGGGI---SGQAGAIR 80 (130)
T ss_pred EEeeCCCeEEE--EEEE-cCccEEEEC-CEeHHHHcCCHHHHHHHHHHHHHhCccCceeEEEEEEcCCH---HHHHHHHH
Confidence 45667664444 4443 799998876 6664442 1 223335689999999999411 13344444
Q ss_pred hhHHHHHHH
Q 029253 151 LAIGTALLQ 159 (196)
Q Consensus 151 IaLGqAL~q 159 (196)
.++..||.+
T Consensus 81 ~aiaraLv~ 89 (130)
T PRK00132 81 HGIARALLE 89 (130)
T ss_pred HHHHHHHHH
Confidence 445555543
No 28
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=37.05 E-value=16 Score=30.96 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=43.0
Q ss_pred CCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcc------eEEEEecCccccCC---------cchhhhhhhHH
Q 029253 90 KETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFD------VHVRATGDIHIDDH---------HTNEDVGLAIG 154 (196)
Q Consensus 90 kET~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~d------L~I~A~GDl~VDdH---------HtvEDvGIaLG 154 (196)
..|+|.+.+.-+|=.....+|+--..+|=|..+++=++-| +.--||-.. +.| -+.+|+..+||
T Consensus 73 ~~~~V~l~IS~~~v~~~~~~t~~ii~~H~l~~ISfaa~gd~d~~~~~ayIAKd~~--~~r~ChVf~~~~~lAq~Ii~TIG 150 (160)
T cd01209 73 AGMPITINVSSSSLNLMAQDCKQIIANHHMQSISFASGGDPDTAEYVAYIAKNPD--NQRACHVLECPEGLAQDLISTIG 150 (160)
T ss_pred cCceEEEEEEeeEEEEeccCchhHHhcCCCcceEEEeCCCCCcceeEEEEEcCCC--CCceeEEEEcCCchHHHHHHHHH
Confidence 3566666666555456777888877777777777666411 112233111 112 24789999999
Q ss_pred HHHHHh
Q 029253 155 TALLQA 160 (196)
Q Consensus 155 qAL~qA 160 (196)
|||.=|
T Consensus 151 QAF~la 156 (160)
T cd01209 151 QAFELR 156 (160)
T ss_pred HHHHHH
Confidence 999854
No 29
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.41 E-value=47 Score=27.54 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.5
Q ss_pred CCceeeeecCCccHHHHHHHHHhhcCcceEE
Q 029253 102 GSGVADSSTCIPFLDHMLDQLASHGLFDVHV 132 (196)
Q Consensus 102 G~G~~~I~TGIgFlDHML~~~a~H~g~dL~I 132 (196)
+.|+ -++-|||||-..-..|++|| ||+..
T Consensus 13 ~~gk-VvEVGiG~~~~VA~~L~e~g-~dv~a 41 (129)
T COG1255 13 ARGK-VVEVGIGFFLDVAKRLAERG-FDVLA 41 (129)
T ss_pred cCCc-EEEEccchHHHHHHHHHHcC-CcEEE
Confidence 4554 38999999999999999999 88865
No 30
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=32.66 E-value=51 Score=25.61 Aligned_cols=70 Identities=24% Similarity=0.321 Sum_probs=42.5
Q ss_pred eEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCc--c--eEEEEecCccccCC--c------c--hhhhhhhHHHHH
Q 029253 92 TNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLF--D--VHVRATGDIHIDDH--H------T--NEDVGLAIGTAL 157 (196)
Q Consensus 92 T~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~--d--L~I~A~GDl~VDdH--H------t--vEDvGIaLGqAL 157 (196)
++|.+++..+|=-..+.+|+.-..+|=+..+++-+.= + +---...|-.-+.| | . .+++..++|+||
T Consensus 45 ~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~ISfc~~d~~~~~~FafIa~~~~~~~~~ChvF~~~~~~~A~~I~~tig~AF 124 (132)
T cd01267 45 PKVELDISIKGVKIIDPKTKTVLHGHPLYNISCCAQDKEDLRFFAFIAKDTETNKHYCHVFCSEKLGLAEEIILTIGQAF 124 (132)
T ss_pred CeEEEEEEcCcEEEEeCCCCcEEEEcccceEEEEecCCCCCeEEEEEEecCCCCceEEEEEECCCHHHHHHHHHHHHHHH
Confidence 5677777766655566678888888888777665432 1 11111122111222 1 2 789999999999
Q ss_pred HHhc
Q 029253 158 LQAL 161 (196)
Q Consensus 158 ~qAL 161 (196)
.-|.
T Consensus 125 ~~ay 128 (132)
T cd01267 125 ELAY 128 (132)
T ss_pred HHHH
Confidence 8764
No 31
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=29.84 E-value=76 Score=26.90 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=29.6
Q ss_pred CeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhc
Q 029253 91 ETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHG 126 (196)
Q Consensus 91 ET~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~ 126 (196)
-|+|++.+..+|=-....+|.--..||=|..++.=+
T Consensus 49 ~t~V~L~IS~~gV~v~~~~tk~im~~h~L~~ISy~A 84 (156)
T cd01208 49 STEVDLFISTEKIMVLNTDLQEIXMDHALRTISYIA 84 (156)
T ss_pred CcEEEEEEEeCeEEEEecCccceeccCcccceEEEe
Confidence 468888888888777888899999999888877655
No 32
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=29.70 E-value=48 Score=31.95 Aligned_cols=73 Identities=22% Similarity=0.387 Sum_probs=52.2
Q ss_pred EEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHHHhcCCccccceeccee
Q 029253 95 SVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFT 174 (196)
Q Consensus 95 ~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~qALGdk~GI~RyG~a~ 174 (196)
-++..|||+|+ -+=-||+-.++..+..|-+.++. .++.=|-.|-.-+-++|. +.|+.|+.-.+
T Consensus 160 glEaHlDGqGE---P~lYP~l~~lVqalk~~~~v~vV-------------SmQTng~~L~~~lv~eLe-eAGLdRiNlSv 222 (414)
T COG2100 160 GLEAHLDGQGE---PLLYPHLVDLVQALKEHKGVEVV-------------SMQTNGVLLSKKLVDELE-EAGLDRINLSV 222 (414)
T ss_pred CeEEEecCCCC---CccchhHHHHHHHHhcCCCceEE-------------EEeeCceeccHHHHHHHH-HhCCceEEeec
Confidence 35667899997 34568888899999998777653 223334455556666664 46999999888
Q ss_pred cccccceeee
Q 029253 175 APLDEALIHV 184 (196)
Q Consensus 175 vPMDEALa~v 184 (196)
=-+|+.+|..
T Consensus 223 ~aLDpk~Ak~ 232 (414)
T COG2100 223 DALDPKLAKM 232 (414)
T ss_pred ccCCHHHHHH
Confidence 8889888754
No 33
>PF09918 DUF2148: Uncharacterized protein containing a ferredoxin domain (DUF2148); InterPro: IPR019224 This domain, found in various hypothetical bacterial and archaeal proteins containing a ferredoxin domain, has no known function.
Probab=27.98 E-value=39 Score=25.34 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=14.5
Q ss_pred chhhhhhhHHHHHHHhc
Q 029253 145 TNEDVGLAIGTALLQAL 161 (196)
Q Consensus 145 tvEDvGIaLGqAL~qAL 161 (196)
..-|+||++|-|.+.|-
T Consensus 10 ~~~DLGIAlgSAv~~A~ 26 (69)
T PF09918_consen 10 RAIDLGIALGSAVKTAS 26 (69)
T ss_pred eccchhHHHHHHHHHHH
Confidence 45699999999999875
No 34
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=27.36 E-value=35 Score=27.22 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=40.0
Q ss_pred eEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceE-----EEEecCc-----c----ccCCcchhhhhhhHHHHH
Q 029253 92 TNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVH-----VRATGDI-----H----IDDHHTNEDVGLAIGTAL 157 (196)
Q Consensus 92 T~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~-----I~A~GDl-----~----VDdHHtvEDvGIaLGqAL 157 (196)
++|.++|..+|=-..+.+|+--.++|=|..+++=+. |-+ .-...|- + ++.-...||+..++||||
T Consensus 55 ~~V~L~IS~~GI~v~d~~t~~~~~~~~i~~ISfca~-d~~~~r~FayIak~~~~~~~~~ChvF~s~~~A~~I~~tigqAF 133 (142)
T cd01273 55 QKVEIRISIDGVIIAEPKTKAPMHTFPLGRISFCAD-DKDDKRMFSFIAKAEGASGKHSCFVFTSEKLAEDITLTIGQAF 133 (142)
T ss_pred cEEEEEEECCeEEEEEcCCCcEEEEcCcceEEEEec-CCCCCeEEEEEecCCCCCCcEEEEEEeccchHHHHHHHHHHHH
Confidence 567777776665556667777777776665544322 100 0011110 0 111246899999999999
Q ss_pred HHhc
Q 029253 158 LQAL 161 (196)
Q Consensus 158 ~qAL 161 (196)
.-|.
T Consensus 134 ~~ay 137 (142)
T cd01273 134 DLAY 137 (142)
T ss_pred HHHH
Confidence 8764
No 35
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=27.00 E-value=94 Score=23.23 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=17.0
Q ss_pred EEeeeCCeEEEEEEEeCCCcee
Q 029253 85 VKRVTKETNVSVKINVDGSGVA 106 (196)
Q Consensus 85 i~R~TkET~I~V~LnLDG~G~~ 106 (196)
+.+++++|.+..+|+ ||+|..
T Consensus 7 ~sv~~~~~~~~~tLd-DgTG~I 27 (92)
T cd04483 7 VSRRERETFYSFGVD-DGTGVV 27 (92)
T ss_pred EEEEecCCeEEEEEe-cCCceE
Confidence 456788899999998 899964
No 36
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=26.99 E-value=79 Score=28.55 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHHHhcCCccccceecceeccc
Q 029253 113 PFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPL 177 (196)
Q Consensus 113 gFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~qALGdk~GI~RyG~a~vPM 177 (196)
|..+..|.+|+..|-=.+.|-+-|-+ .|.--|.+|+.|-.-+.+.+ .|+.+|- ++|+
T Consensus 241 P~~~~~l~~l~~~G~~~V~v~p~gFv-~D~lETl~eidie~re~~~~-----~G~~~~~--~ip~ 297 (316)
T PF00762_consen 241 PSTEDVLEELAKEGVKRVVVVPPGFV-SDCLETLYEIDIEYRELAEE-----AGGEEFV--RIPC 297 (316)
T ss_dssp SBHHHHHHHHHHCT-SEEEEEETT-S-SSSHHHHCCCCCHHHHHHHH-----HTCCEEE--E---
T ss_pred ccHHHHHHHHHhcCCCeEEEECCccc-cccHhHHHHHHHHHHHHHHH-----cCCceEE--EeCC
Confidence 67899999999999888999999843 34448999999999887774 4777774 5665
No 37
>CHL00079 rps9 ribosomal protein S9
Probab=21.77 E-value=4.3e+02 Score=21.50 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=31.8
Q ss_pred EEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHH----------H---HHHHHhhcCcceEEEEecC
Q 029253 83 GEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDH----------M---LDQLASHGLFDVHVRATGD 137 (196)
Q Consensus 83 a~i~R~TkET~I~V~LnLDG~G~~~I~TGIgFlDH----------M---L~~~a~H~g~dL~I~A~GD 137 (196)
+.-+|+|.=. .|.+. .|+|.+.|+ |.++.+. + |...-..+.+|+.++++|-
T Consensus 7 ~~GrRKta~A--rv~l~-~G~G~i~IN-g~~~~~yf~~~~~~~~~v~~Pl~~~~~~~~~Di~i~V~GG 70 (130)
T CHL00079 7 GTGRRKTAVA--QVRLV-PGSGEIIIN-GKPAEEYLQYNPNYLNAIKAPLKLLGLENKYDIIVKVKGG 70 (130)
T ss_pred EEeeCCCeEE--EEEEE-cCCcEEEEC-CCcHHHHCCcCHHHHHHHHHHHHHhCcCCceeEEEEEEcC
Confidence 4556666444 44453 899998886 5553222 1 1223357889999999984
No 38
>TIGR03627 arch_S9P archaeal ribosomal protein S9P. This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.
Probab=21.57 E-value=4.4e+02 Score=21.44 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=39.4
Q ss_pred EEEEeeeCCeEEEEEEEeCCCceeeeecCCcc---H-----HHHHHHHH----hhcCcceEEEEecCccccCCcchhhhh
Q 029253 83 GEVKRVTKETNVSVKINVDGSGVADSSTCIPF---L-----DHMLDQLA----SHGLFDVHVRATGDIHIDDHHTNEDVG 150 (196)
Q Consensus 83 a~i~R~TkET~I~V~LnLDG~G~~~I~TGIgF---l-----DHML~~~a----~H~g~dL~I~A~GDl~VDdHHtvEDvG 150 (196)
+.-+|+|.-. .|.+. .|+|++.|+ |.++ + .++++-|. ..+.||+.++++|-= ..--.+-+-
T Consensus 4 ~~GrRKta~A--~v~l~-~G~G~i~VN-g~~~~~y~~~~~r~~i~~Pl~~~~~~~~~~Dv~i~V~GGG---~sgQa~Air 76 (130)
T TIGR03627 4 TSGKRKTAIA--RATIR-EGKGRVRIN-GVPVELYPPELARLKIMEPLILAGDIAKEVDIDVKVSGGG---IMGQADAAR 76 (130)
T ss_pred EEeeCCCeEE--EEEEE-cCceEEEEC-CEeHHHhCCHHHHHHHHHHHHHHhccccCccEEEEEEcCC---hhHHHHHHH
Confidence 3456666444 44444 789988775 2332 1 12222222 467999999999941 123444455
Q ss_pred hhHHHHHHHh
Q 029253 151 LAIGTALLQA 160 (196)
Q Consensus 151 IaLGqAL~qA 160 (196)
.++..||...
T Consensus 77 ~aIaraL~~~ 86 (130)
T TIGR03627 77 TAIARGLVEF 86 (130)
T ss_pred HHHHHHHHHh
Confidence 5555566554
No 39
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=20.75 E-value=94 Score=23.37 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=18.0
Q ss_pred cceeccccc--ceeeeEEEccCcee
Q 029253 171 GDFTAPLDE--ALIHVSLVCLFHIL 193 (196)
Q Consensus 171 G~a~vPMDE--ALa~vavDlSG~~~ 193 (196)
|.|+.|+|| +.+....++.||+.
T Consensus 46 g~f~fPL~e~~~V~gfea~i~gr~v 70 (78)
T PF13757_consen 46 GVFVFPLDEGATVVGFEADIGGRIV 70 (78)
T ss_pred EEEEEecCCCcEEEEEEEEeCCcEE
Confidence 568889988 45677888999875
Done!