Query 029253
Match_columns 196
No_of_seqs 147 out of 1034
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 16:12:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1d_A IGPD 1, imidazoleglycer 100.0 1.2E-59 4E-64 398.9 12.2 118 78-195 8-125 (207)
2 1rhy_A IGPD, imidazole glycero 100.0 2.5E-59 8.4E-64 395.7 13.3 117 79-195 2-123 (202)
3 2ae8_A IGPD, imidazoleglycerol 100.0 7.5E-58 2.5E-62 390.8 8.9 117 78-195 27-143 (221)
4 1rhy_A IGPD, imidazole glycero 97.6 0.0003 1E-08 59.7 8.9 81 80-163 96-187 (202)
5 2ae8_A IGPD, imidazoleglycerol 97.6 0.00036 1.2E-08 60.0 9.3 81 80-163 116-207 (221)
6 2f1d_A IGPD 1, imidazoleglycer 97.5 0.00019 6.4E-09 61.1 7.0 79 81-162 99-188 (207)
7 2ja9_A Exosome complex exonucl 53.8 6.5 0.00022 31.7 2.2 41 117-159 112-152 (175)
8 1rlz_A DHS, deoxyhypusine synt 47.5 7.8 0.00027 35.2 2.0 75 86-181 91-176 (369)
9 3bbn_I Ribosomal protein S9; s 43.5 6.3 0.00022 33.3 0.6 51 83-137 74-137 (197)
10 2z0s_A Probable exosome comple 36.4 20 0.00068 29.6 2.6 42 117-160 168-209 (235)
11 2ba0_A Archeal exosome RNA bin 22.3 37 0.0012 28.1 1.8 42 116-160 155-196 (229)
12 2r4q_A Phosphotransferase syst 21.6 77 0.0026 23.8 3.3 35 116-150 22-56 (106)
13 2r48_A Phosphotransferase syst 21.6 74 0.0025 23.9 3.2 35 116-150 22-56 (106)
No 1
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Probab=100.00 E-value=1.2e-59 Score=398.88 Aligned_cols=118 Identities=84% Similarity=1.177 Sum_probs=114.0
Q ss_pred CCCceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHH
Q 029253 78 DSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL 157 (196)
Q Consensus 78 ~~~R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL 157 (196)
..+|+++++|+|+||+|+|+|||||+|+++|+||||||||||+||++||+|||+|+|+||++||+|||+||+||+|||||
T Consensus 8 ~~~R~a~v~R~T~ET~I~v~l~LDG~G~~~i~TGigFlDHML~~~a~Hg~~dL~v~a~GDl~iD~HHtvEDvgI~LG~Al 87 (207)
T 2f1d_A 8 ALGRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIGTAL 87 (207)
T ss_dssp --CCEEEEEEECSSCEEEEEEETTCCCCEEEECSCHHHHHHHHHHHHHHTCEEEEEEECCTTTCSHHHHHHHHHHHHHHH
T ss_pred cccceEEEEEcCCcEEEEEEEEeCCCCceeeeCCChHHHHHHHHHHHHcCCceEEEEecCccccCCCchhhhhhhHHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccccceecceecccccceeeeEEEccCceeec
Q 029253 158 LQALGDRKGINRFGDFTAPLDEALIHVSLVCLFHILLI 195 (196)
Q Consensus 158 ~qALGdk~GI~RyG~a~vPMDEALa~vavDlSG~~~~~ 195 (196)
+||||||+||+|||++++||||||++|+||||||-.+.
T Consensus 88 ~~ALGdk~GI~RyG~a~vPMDEaLa~v~vDlSGRpylv 125 (207)
T 2f1d_A 88 LKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLG 125 (207)
T ss_dssp HHHHTTCCSBCCBCCEEEEETTEEEEEEEECCSSCEEE
T ss_pred HHHhcCccccceeEeeeecccceeeEEEEEcCCCCeEE
Confidence 99999999999999999999999999999999998764
No 2
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B CROS motif, gene duplication; 2.30A {Filobasidiella neoformans} SCOP: d.14.1.9 d.14.1.9
Probab=100.00 E-value=2.5e-59 Score=395.66 Aligned_cols=117 Identities=45% Similarity=0.686 Sum_probs=108.4
Q ss_pred CCceEEEEeeeCCeEEEEEEEeCCCc-----eeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhH
Q 029253 79 SGRIGEVKRVTKETNVSVKINVDGSG-----VADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAI 153 (196)
Q Consensus 79 ~~R~a~i~R~TkET~I~V~LnLDG~G-----~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaL 153 (196)
++|+++++|+|+||+|+|+|||||+| +++|+||||||||||+||++||+|||+|+|+||++||+|||+||+||+|
T Consensus 2 ~~R~a~v~R~T~ET~I~v~l~LDG~g~~~~~~~~i~TGigFlDHML~~la~Hg~~dL~v~a~GDl~iD~HHtvED~gI~L 81 (202)
T 1rhy_A 2 SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQCKGDLHIDDHHTAEDCALAL 81 (202)
T ss_dssp CCCEEEEEEECSSCEEEEEEESCCCTTTCCCCEEEECSCHHHHHHHHHHHHHTTCEEEEEEESCC------CCHHHHHHH
T ss_pred CceeEEEEecCCceEEEEEEEeCCCCCcccceeeeeCCCcHHHHHHHHHHHHcCCceEEEEecCCccccCccHHHhhhhH
Confidence 46999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccccceecceecccccceeeeEEEccCceeec
Q 029253 154 GTALLQALGDRKGINRFGDFTAPLDEALIHVSLVCLFHILLI 195 (196)
Q Consensus 154 GqAL~qALGdk~GI~RyG~a~vPMDEALa~vavDlSG~~~~~ 195 (196)
||||+||||||+||+|||++++||||||++|+||||||-.+.
T Consensus 82 G~Al~~ALGdk~GI~RyG~a~vPMDEaL~~v~vDlSgRpylv 123 (202)
T 1rhy_A 82 GEAFKKALGERKGIKRYGYAYAPLDESLSRAVIDISSRPYFM 123 (202)
T ss_dssp HHHHHHHHTTCTTCCCEEEEEEEETTEEEEEEEECSSCCEEE
T ss_pred HHHHHHHhcCccccceeecccccccceeeEEEEEcCCCceEE
Confidence 999999999999999999999999999999999999998764
No 3
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Probab=100.00 E-value=7.5e-58 Score=390.85 Aligned_cols=117 Identities=33% Similarity=0.535 Sum_probs=104.3
Q ss_pred CCCceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHH
Q 029253 78 DSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL 157 (196)
Q Consensus 78 ~~~R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL 157 (196)
+.+|+++++|+|+||+|+|+|||| +|+++|+||||||||||+||++||+|||+|+|+||++||+|||+||+||+|||||
T Consensus 27 ~~~R~a~v~R~T~ET~I~v~l~LD-~G~~~i~TGigFlDHML~~la~Hg~~dL~v~a~GDl~iD~HHTvEDvgI~LGqAl 105 (221)
T 2ae8_A 27 SNAMIYQKQRNTAETQLNISISDD-QSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLL 105 (221)
T ss_dssp ---CEEEEEC----CEEEEEEESS-CCCCEEECSCHHHHHHHHHHHHHHCCEEEEEEECC----HHHHHHHHHHHHHHHH
T ss_pred CcceeEEEEEeCCcEEEEEEEEeC-CCcceecCCCcHHHHHHHHHHHHcCCceEEEEeeCCcccCCccHHHHHhHHHHHH
Confidence 456999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccccceecceecccccceeeeEEEccCceeec
Q 029253 158 LQALGDRKGINRFGDFTAPLDEALIHVSLVCLFHILLI 195 (196)
Q Consensus 158 ~qALGdk~GI~RyG~a~vPMDEALa~vavDlSG~~~~~ 195 (196)
+||||||+||+|||++++||||||++|+||||||-.+.
T Consensus 106 ~~ALGdk~GI~RyG~a~vPMDEaLa~v~vDlSGRpylv 143 (221)
T 2ae8_A 106 LEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLS 143 (221)
T ss_dssp HHHHHHCCSBCCEEEEEEEETTEEEEEEEECCSCCEEE
T ss_pred HHHhcCcccCceeecceecccceeEEEEEEcCCCceEE
Confidence 99999999999999999999999999999999998764
No 4
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B CROS motif, gene duplication; 2.30A {Filobasidiella neoformans} SCOP: d.14.1.9 d.14.1.9
Probab=97.56 E-value=0.0003 Score=59.67 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=69.8
Q ss_pred CceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEE-ecCccccCCcchhh
Q 029253 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRA-TGDIHIDDHHTNED 148 (196)
Q Consensus 80 ~R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIg----------FlDHML~~~a~H~g~dL~I~A-~GDl~VDdHHtvED 148 (196)
.|.+...--=-|+-+.+.|++-|+.-...+-+.+ -+.|.+..|+.++++.|.|++ .|+ ++||.+|-
T Consensus 96 ~RyG~a~vPMDEaL~~v~vDlSgRpylv~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tLHi~~l~G~---N~HH~~Ea 172 (202)
T 1rhy_A 96 KRYGYAYAPLDESLSRAVIDISSRPYFMCHLPFTREKVGDLSTEMVSHLLQSFAFAAGVTLHIDSIRGE---NNHHIAES 172 (202)
T ss_dssp CCEEEEEEEETTEEEEEEEECSSCCEEEEECCCCSSEETTEETHHHHHHHHHHHHHHTCEEEEEEEECS---SHHHHHHH
T ss_pred ceeecccccccceeeEEEEEcCCCceEEEccCCCCcccCCCChHHHHHHHHHHHhhCCCeEEEEEEecC---CcHHHHHH
Confidence 3777777788999999999999987666654432 588999999999999999996 785 67999999
Q ss_pred hhhhHHHHHHHhcCC
Q 029253 149 VGLAIGTALLQALGD 163 (196)
Q Consensus 149 vGIaLGqAL~qALGd 163 (196)
+--++|.||++|+..
T Consensus 173 ~FKA~arALr~A~~~ 187 (202)
T 1rhy_A 173 AFKALALAIRMAISR 187 (202)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999864
No 5
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Probab=97.55 E-value=0.00036 Score=59.99 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=69.9
Q ss_pred CceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEE-ecCccccCCcchhh
Q 029253 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRA-TGDIHIDDHHTNED 148 (196)
Q Consensus 80 ~R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIg----------FlDHML~~~a~H~g~dL~I~A-~GDl~VDdHHtvED 148 (196)
.|.+...--=-|+-+.+.|++-|+.-...+-+.+ -+.|.+..|+.++++.|.|++ .|+ ++||.+|-
T Consensus 116 ~RyG~a~vPMDEaLa~v~vDlSGRpylv~~~~~~~~~iG~~~telv~hFf~s~a~~a~~tLHi~~l~G~---N~HH~~EA 192 (221)
T 2ae8_A 116 VRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGG---NTHHEIEA 192 (221)
T ss_dssp CCEEEEEEEETTEEEEEEEECCSCCEEEEECCCSCSEETTEETTHHHHHHHHHHHHTTCEEEEEEEECS---CHHHHHHH
T ss_pred ceeecceecccceeEEEEEEcCCCceEEEecccCCcccCCCChHHHHHHHHHHHhcCCceEEEEeeecC---CcHHHHHH
Confidence 3777777788999999999999988666654432 588999999999999999999 785 67999999
Q ss_pred hhhhHHHHHHHhcCC
Q 029253 149 VGLAIGTALLQALGD 163 (196)
Q Consensus 149 vGIaLGqAL~qALGd 163 (196)
+--++|.||++|+.-
T Consensus 193 ~FKA~arALr~A~~~ 207 (221)
T 2ae8_A 193 IFKAFSRALGIALTA 207 (221)
T ss_dssp HHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHhhCc
Confidence 999999999999863
No 6
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Probab=97.51 E-value=0.00019 Score=61.15 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=67.3
Q ss_pred ceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEE-ecCccccCCcchhhh
Q 029253 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRA-TGDIHIDDHHTNEDV 149 (196)
Q Consensus 81 R~a~i~R~TkET~I~V~LnLDG~G~~~I~TGIg----------FlDHML~~~a~H~g~dL~I~A-~GDl~VDdHHtvEDv 149 (196)
|.+...--=-|+-+.+.|++-|+.-...+-+.+ -+.|.+..|+.++++.|.|++ .|+ ++||.+|-+
T Consensus 99 RyG~a~vPMDEaLa~v~vDlSGRpylv~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tLHi~~l~G~---N~HH~~Ea~ 175 (207)
T 2f1d_A 99 RFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGE---NSHHIIEAT 175 (207)
T ss_dssp CBCCEEEEETTEEEEEEEECCSSCEEEEECCCSSSEETTEETTHHHHHHHHHHHHHTCEEEEEEEECC---CHHHHHHHH
T ss_pred eeEeeeecccceeeEEEEEcCCCCeEEEecccCccccCCCchhhHHHHHHHHHhcCCCEEEEEeeecC---CcHHHHHHH
Confidence 666566677899999999999988666654432 588999999999999999995 786 679999999
Q ss_pred hhhHHHHHHHhcC
Q 029253 150 GLAIGTALLQALG 162 (196)
Q Consensus 150 GIaLGqAL~qALG 162 (196)
--++|.||++|+.
T Consensus 176 FKA~arALr~A~~ 188 (207)
T 2f1d_A 176 FKAFARALRQATE 188 (207)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999986
No 7
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=53.80 E-value=6.5 Score=31.74 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHHH
Q 029253 117 HMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQ 159 (196)
Q Consensus 117 HML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~q 159 (196)
|||+.+.++.+|++.+=..|-+||+.... +.-+++++||..
T Consensus 112 ~~l~~l~~~~~~ei~vG~NG~IWi~~~~~--~~~~~v~~aI~~ 152 (175)
T 2ja9_A 112 PLLKVLAAHTKFEVAIGLNGKIWVKCEEL--SNTLACYRTIME 152 (175)
T ss_dssp CHHHHHHTTCCCEEEEETTTEEEEECSSH--HHHHHHHHHHHH
T ss_pred chHHhhhccCCeEEEEECCcEEEEecCCH--HHHHHHHHHHHH
Confidence 59999999999999999999999997533 666778888886
No 8
>1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor, spermid transferase; HET: NAD; 2.15A {Homo sapiens} SCOP: c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A*
Probab=47.48 E-value=7.8 Score=35.24 Aligned_cols=75 Identities=25% Similarity=0.403 Sum_probs=52.1
Q ss_pred EeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHH----------
Q 029253 86 KRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGT---------- 155 (196)
Q Consensus 86 ~R~TkET~I~V~LnLDG~G~~~I~TGIgFlDHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGq---------- 155 (196)
.|+.+++.| -|-+-|+ -|++|++ ..+..|.+|+-+|+-|.--|-+ .||+.-|||-
T Consensus 91 ~~~~~~~tI--FLg~tgn---missGlR---~iI~~Li~~~~VDvIVTTgggi-------ehD~ik~lg~~y~G~f~~dd 155 (369)
T 1rlz_A 91 RRPLTSCTI--FLGYTSN---LISSGIR---ETIRYLVQHNMVDVLVTTAGGV-------EEDLIKCLAPTYLGEFSLRG 155 (369)
T ss_dssp ----CSSEE--EEEECTH---HHHSTHH---HHHHHHHHTTCCSEEEECHHHH-------HHHHHTTTSCCEECCTTCCH
T ss_pred hcccCCCeE--EEEcccc---ccchhHH---HHHHHHHHcCCeeEEEccCCch-------HHHHHHHhccceecCCCCCh
Confidence 344455666 5555443 4788876 8899999999999999888854 4566666652
Q ss_pred -HHHHhcCCccccceecceecccccce
Q 029253 156 -ALLQALGDRKGINRFGDFTAPLDEAL 181 (196)
Q Consensus 156 -AL~qALGdk~GI~RyG~a~vPMDEAL 181 (196)
.|+ ++||+|.|.-++|- |++
T Consensus 156 ~~Lr-----~~ginRIgn~~ip~-e~y 176 (369)
T 1rlz_A 156 KELR-----ENGINRIGNLLVPN-ENY 176 (369)
T ss_dssp HHHH-----HTTEEEETTEEEET-HHH
T ss_pred HHHH-----HcCCCcccceeecc-HHH
Confidence 333 57999999999997 444
No 9
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=43.47 E-value=6.3 Score=33.27 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=31.0
Q ss_pred EEEEeeeCCeEEEEEEEeCCCceeeeecCCccHH-------H---H---HHHHHhhcCcceEEEEecC
Q 029253 83 GEVKRVTKETNVSVKINVDGSGVADSSTCIPFLD-------H---M---LDQLASHGLFDVHVRATGD 137 (196)
Q Consensus 83 a~i~R~TkET~I~V~LnLDG~G~~~I~TGIgFlD-------H---M---L~~~a~H~g~dL~I~A~GD 137 (196)
+.-+|+| .-..|.+. .|+|.+.|+ |.++-+ + + |......+.||+.|+++|-
T Consensus 74 ~tGRRKt--AvArV~l~-~G~G~I~VN-g~~l~~YF~~~~~~~~~v~~PL~l~~~~~k~DI~v~V~GG 137 (197)
T 3bbn_I 74 GTGRRKC--AIARVVLQ-EGTGKFIIN-YRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGG 137 (197)
T ss_dssp CCCEETT--EEEEEEEE-ESSCCEEET-TEEHHHHSCSCCGGGTTTSHHHHTTTCTTTEEEEEEEESS
T ss_pred EEeeCCc--eEEEEEEE-cCceeEEEC-CCcHHHHcCccHHHHHHHHHHHHHhCccCceeEEEEEecC
Confidence 3455655 34444554 799998874 555222 2 1 2222346899999999994
No 10
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=36.39 E-value=20 Score=29.63 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHHHh
Q 029253 117 HMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQA 160 (196)
Q Consensus 117 HML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~qA 160 (196)
+||+.|.++.+|++.+=..|-+||+.. .+..-+++++||...
T Consensus 168 ~~l~~l~~~~~~~i~vG~NG~IWi~~~--~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 168 SMLKTLEEKTECKIFVARNGRIHLECP--NEDLEAIAVMAIKII 209 (235)
T ss_dssp HHHHHHHHHHCCEEEEETTTEEEEECS--CHHHHHHHHHHHHHH
T ss_pred hHHHHhcccCCeEEEEeCCCEEEEecC--CHHHHHHHHHHHHHH
Confidence 799999999999999999999999975 333456778888765
No 11
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=22.34 E-value=37 Score=28.08 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCcceEEEEecCccccCCcchhhhhhhHHHHHHHh
Q 029253 116 DHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQA 160 (196)
Q Consensus 116 DHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvGIaLGqAL~qA 160 (196)
..||+.|.++.+|++.|=..|-+||+.. .+ .-+.+++|+...
T Consensus 155 ~~~l~~l~~~~~~ei~vG~NG~IWi~~~--~~-~~~~~~~ai~~~ 196 (229)
T 2ba0_A 155 GSMIKLLKSELDVQIVVGQNGLIWVNGD--RR-KVSIAEEAIYLI 196 (229)
T ss_dssp GHHHHHHHHHHTCEEEECTTSEEEEESC--HH-HHHHHHHHHHHH
T ss_pred chHHHHhcccCCeEEEEECCcEEEEeCC--ch-hHHHHHHHHHHH
Confidence 3599999999999999999999999942 22 567788888754
No 12
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=21.63 E-value=77 Score=23.80 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCcceEEEEecCccccCCcchhhhh
Q 029253 116 DHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVG 150 (196)
Q Consensus 116 DHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvG 150 (196)
--.|++-|+-.|+++.|+.+|-..+.+--+.||+.
T Consensus 22 aeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~ 56 (106)
T 2r4q_A 22 ADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIE 56 (106)
T ss_dssp HHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHH
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHH
Confidence 35789999999999999999999999888888875
No 13
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=21.62 E-value=74 Score=23.89 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCcceEEEEecCccccCCcchhhhh
Q 029253 116 DHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVG 150 (196)
Q Consensus 116 DHML~~~a~H~g~dL~I~A~GDl~VDdHHtvEDvG 150 (196)
--.|++-|+-.|+++.|+.+|-..+.+--+.||+.
T Consensus 22 aeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~ 56 (106)
T 2r48_A 22 AENLQKAADRLGVSIKVETQGGIGVENKLTEEEIR 56 (106)
T ss_dssp HHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHH
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHH
Confidence 34689999999999999999999999888888875
Done!