RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029253
(196 letters)
>d2f1da1 d.14.1.9 (A:10-95) Imidazole glycerol phosphate dehydratase
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 124 bits (314), Expect = 3e-38
Identities = 77/86 (89%), Positives = 84/86 (97%)
Query: 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIH 139
GRIGEVKRVTKETNVSVKIN+DG+GVADSS+ IPFLDHMLDQLASHGLFDVHVRATGD+H
Sbjct: 1 GRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVH 60
Query: 140 IDDHHTNEDVGLAIGTALLQALGDRK 165
IDDHHTNED+ LAIGTALL+ALG+RK
Sbjct: 61 IDDHHTNEDIALAIGTALLKALGERK 86
>d2ae8a1 d.14.1.9 (A:1-84) Imidazole glycerol phosphate dehydratase
{Staphylococcus aureus [TaxId: 1280]}
Length = 84
Score = 114 bits (286), Expect = 5e-34
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 82 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHID 141
I + +R T ET +++ I+ D + +T + FL+HML H +++ A GDI +D
Sbjct: 2 IYQKQRNTAETQLNISIS-DDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVD 60
Query: 142 DHHTNEDVGLAIGTALLQALGDRK 165
DHH ED+G+ IG LL+ + D+K
Sbjct: 61 DHHVTEDIGIVIGQLLLEMIKDKK 84
>d1rhya1 d.14.1.9 (A:2-93) Imidazole glycerol phosphate dehydratase
{Fungus (Filobasidiella neoformans) [TaxId: 5207]}
Length = 92
Score = 112 bits (282), Expect = 2e-33
Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 79 SGRIGEVKRVTKETNVSVKINVD-----GSGVADSSTCIPFLDHMLDQLASHGLFDVHVR 133
S RI V+R T ET++S I++D + ST I FLDHM LA HG + ++
Sbjct: 1 SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQ 60
Query: 134 ATGDIHIDDHHTNEDVGLAIGTALLQALGDRK 165
GD+HIDDHHT ED LA+G A +ALG+RK
Sbjct: 61 CKGDLHIDDHHTAEDCALALGEAFKKALGERK 92
>d2f1da2 d.14.1.9 (A:96-192) Imidazole glycerol phosphate
dehydratase {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 97
Score = 37.1 bits (86), Expect = 2e-04
Identities = 21/23 (91%), Positives = 21/23 (91%)
Query: 166 GINRFGDFTAPLDEALIHVSLVC 188
GINRFGDFTAPLDEALIHVSL
Sbjct: 1 GINRFGDFTAPLDEALIHVSLDL 23
Score = 25.5 bits (56), Expect = 1.7
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 91 ETNVSVKINVDGSGVADSSTCIPF----------LDHMLDQLASHGLFDVHVRA-TGDIH 139
E + V +++ G + IP ++H L + +H+R G+
Sbjct: 14 EALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGE-- 71
Query: 140 IDDHHTNEDVGLAIGTALLQAL 161
+ HH E A AL QA
Sbjct: 72 -NSHHIIEATFKAFARALRQAT 92
>d1rhya2 d.14.1.9 (A:94-187) Imidazole glycerol phosphate
dehydratase {Fungus (Filobasidiella neoformans) [TaxId:
5207]}
Length = 94
Score = 36.4 bits (84), Expect = 3e-04
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 166 GINRFGDFTAPLDEALIHVSL 186
GI R+G APLDE+L +
Sbjct: 1 GIKRYGYAYAPLDESLSRAVI 21
Score = 27.1 bits (60), Expect = 0.57
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 117 HMLDQLASHGLFDVHVRA-TGDIHIDDHHTNEDVGLAIGTALLQAL 161
H+L A +H+ + G+ ++HH E A+ A+ A+
Sbjct: 50 HLLQSFAFAAGVTLHIDSIRGE---NNHHIAESAFKALALAIRMAI 92
>d2ae8a2 d.14.1.9 (A:85-179) Imidazole glycerol phosphate
dehydratase {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 32.1 bits (73), Expect = 0.010
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 167 INRFGDFTAPLDEALIHVSL 186
R+G P+DE L V +
Sbjct: 2 FVRYGTMYIPMDETLARVVV 21
Score = 24.8 bits (54), Expect = 3.9
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 114 FLDHMLDQLASHGLFDVHVRAT-GDIHIDDHHTNEDVGLAIGTALLQAL 161
++ + + H+ G + HH E + A AL AL
Sbjct: 47 LVEEFFRAVVINARLTTHIDLIRGG---NTHHEIEAIFKAFSRALGIAL 92
>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid
3/5-O-methyltransferase {Alfalfa (Medicago sativa)
[TaxId: 3879]}
Length = 107
Score = 25.2 bits (55), Expect = 3.5
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 106 ADSSTCIPFLDHMLDQLASHGLFDVHVRATGD 137
+ LD ML LA + + VR D
Sbjct: 56 TTNPDAPVMLDRMLRLLACYIILTCSVRTQQD 87
>d1f0la2 d.166.1.1 (A:1-187) Diphtheria toxin, N-terminal domain
{Corynebacterium diphtheriae [TaxId: 1717]}
Length = 187
Score = 25.5 bits (55), Expect = 3.7
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 138 IHIDDHHT-NEDVGLAIGTALLQALGDRKGINRFGD 172
+ +D+ T +++GL++ L++ +G + I RFGD
Sbjct: 94 LKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFGD 129
>d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 131
Score = 24.4 bits (53), Expect = 7.3
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 82 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHID 141
I ++K T E V VK + GS L+ ++ L + GD+
Sbjct: 13 IEDIKIDTDEAGVVVKADTLGS-----------LEAVVKILRDMYVPIKVA-DIGDVSRR 60
Query: 142 D 142
D
Sbjct: 61 D 61
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
{Escherichia coli [TaxId: 562]}
Length = 99
Score = 23.9 bits (52), Expect = 9.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 78 DSGRIGEVKRVTKETNVSVK 97
D G+ G+VK V V V+
Sbjct: 15 DKGKRGKVKNVLSSGKVIVE 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.375
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 658,180
Number of extensions: 27166
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 16
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)