BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029257
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
Atwrky4
pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
W-Box Dna
Length = 78
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 54/71 (76%)
Query: 91 AFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVIT 150
+T SE++++DDG++WRKYG+K VK +P PR+YYKC+T GC V+K VER D V+T
Sbjct: 7 GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66
Query: 151 TYEGTHNHESP 161
TYEG HNH+ P
Sbjct: 67 TYEGKHNHDLP 77
>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
An Sa-Induced And Partially Npr1-Dependent Transcription
Factor
Length = 76
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 55/73 (75%)
Query: 89 RFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYV 148
R T++ ++++DG++WRKYG+KSVK SP PR+YY+CS+ GC VKK VER D+ +
Sbjct: 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 149 ITTYEGTHNHESP 161
ITTYEG H+H+ P
Sbjct: 62 ITTYEGKHDHDMP 74
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 47 FDEDAYSSQSKASSDKIIMGGSSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFK 106
F DA + + S D +I+GG +SG K K+ V +R + T + DGF
Sbjct: 14 FAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFV 73
Query: 107 W 107
+
Sbjct: 74 Y 74
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 47 FDEDAYSSQSKASSDKIIMGGSSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFK 106
F DA + + S D +I+GG +SG K K+ V +R + T + DGF
Sbjct: 14 FAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFV 73
Query: 107 W 107
+
Sbjct: 74 Y 74
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 47 FDEDAYSSQSKASSDKIIMGGSSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFK 106
F DA + + S D +I+GG +SG K K+ V +R T + DGF
Sbjct: 14 FAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGTLPTAYPNLLTSDGFI 73
Query: 107 W 107
+
Sbjct: 74 Y 74
>pdb|2VSA|A Chain A, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
pdb|2VSE|A Chain A, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
pdb|2VSE|B Chain B, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
Length = 841
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 138 VERDREDSSYVITTYEGTHNHESPCVVY-DYYNHHQ 172
+ R+ D+SYV+ ++G + +P + Y +Y N +Q
Sbjct: 793 IIRNAFDTSYVLDVFQGNFANNTPIITYQNYLNDNQ 828
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,046,525
Number of Sequences: 62578
Number of extensions: 239641
Number of successful extensions: 442
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 16
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)