Query 029257
Match_columns 196
No_of_seqs 164 out of 685
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 2.2E-37 7.4E-42 227.7 6.1 74 89-162 2-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 2.8E-37 9.7E-42 228.1 4.3 75 88-162 4-78 (78)
3 2rpr_A Flywch-type zinc finger 71.4 1.7 5.8E-05 30.8 1.7 52 99-163 22-76 (87)
4 1cz6_A Protein (androctonin); 31.4 11 0.00038 22.0 0.2 8 123-130 16-23 (26)
5 1odh_A MGCM1; transcription fa 15.4 1.1E+02 0.0038 25.2 3.1 37 125-164 123-160 (174)
6 3ed7_A Tsase, TS, thymidylate 15.3 29 0.00098 30.6 -0.4 11 103-113 117-127 (295)
7 1ter_A Tertiapin; toxin; NMR { 15.0 31 0.0011 20.1 -0.2 11 105-115 13-23 (26)
8 3kgb_A Thymidylate synthase 1/ 14.9 29 0.00098 30.6 -0.5 11 103-113 114-124 (294)
9 1xiw_B T-cell surface glycopro 12.7 63 0.0022 22.5 0.9 49 102-158 17-75 (79)
10 2dmb_A Filamin-B; beta-sandwic 9.4 3.8E+02 0.013 19.6 4.3 18 147-164 82-99 (124)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=2.2e-37 Score=227.73 Aligned_cols=74 Identities=53% Similarity=1.079 Sum_probs=72.0
Q ss_pred eeEEeecCCCccCCCcchhhhcCCcccCCCCCCCcccccCCCCCCcceeeeecCCCCcEEEEEEeeecCCCCCc
Q 029257 89 RFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPC 162 (196)
Q Consensus 89 rv~~~T~s~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~p~ 162 (196)
|++|+|.+++++++|||+|||||||.|||+++||+||||++.||+|+|+|||+.+|+.+++|||+|.|||+.|.
T Consensus 2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999885
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=2.8e-37 Score=228.09 Aligned_cols=75 Identities=53% Similarity=1.041 Sum_probs=69.4
Q ss_pred ceeEEeecCCCccCCCcchhhhcCCcccCCCCCCCcccccCCCCCCcceeeeecCCCCcEEEEEEeeecCCCCCc
Q 029257 88 QRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPC 162 (196)
Q Consensus 88 ~rv~~~T~s~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~p~ 162 (196)
.+++|+|++++++++|||+|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|.|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999884
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=71.39 E-value=1.7 Score=30.78 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=32.9
Q ss_pred ccCCCcchhhhcCCcccCCCCCCCcccccCC---CCCCcceeeeecCCCCcEEEEEEeeecCCCCCcc
Q 029257 99 EVMDDGFKWRKYGKKSVKNSPNPRNYYKCST---GGCQVKKRVERDREDSSYVITTYEGTHNHESPCV 163 (196)
Q Consensus 99 ~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~---~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~p~~ 163 (196)
.++-|||.-++--+ ...+.|.+|+. .+|.|+-.... ++ + .-.+.|||++...
T Consensus 22 ~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~~~ 76 (87)
T 2rpr_A 22 FLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPDLA 76 (87)
T ss_dssp EEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCCHH
T ss_pred EEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCchh
Confidence 45678987765221 12468999996 58999854442 21 2 2468899976543
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=31.36 E-value=11 Score=22.01 Aligned_cols=8 Identities=50% Similarity=1.227 Sum_probs=6.6
Q ss_pred cccccCCC
Q 029257 123 NYYKCSTG 130 (196)
Q Consensus 123 sYYrCs~~ 130 (196)
+||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999974
No 5
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=15.38 E-value=1.1e+02 Score=25.18 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=21.5
Q ss_pred cccCC-CCCCcceeeeecCCCCcEEEEEEeeecCCCCCccc
Q 029257 125 YKCST-GGCQVKKRVERDREDSSYVITTYEGTHNHESPCVV 164 (196)
Q Consensus 125 YrCs~-~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~p~~~ 164 (196)
+.|.- .|=||+- +-|..++ . +...=+|.|+|+.|...
T Consensus 123 ~~Crgh~GyPVTh-FWrh~~~-~-ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 123 IPCRGHGGFPVTN-FWRHDGR-F-IFFQSKGEHDHPRPETK 160 (174)
T ss_dssp ECCCTBTTBCCEE-EEEECSS-B-EEEEEECCCCSCCCCCH
T ss_pred EeccCcCCCcceE-EEEEcCC-E-EEEecccccCCCCCCCc
Confidence 45542 3555543 4443333 2 33456899999999775
No 6
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=15.25 E-value=29 Score=30.64 Aligned_cols=11 Identities=45% Similarity=1.340 Sum_probs=8.9
Q ss_pred CcchhhhcCCc
Q 029257 103 DGFKWRKYGKK 113 (196)
Q Consensus 103 DGy~WRKYGQK 113 (196)
=|++||.+|.+
T Consensus 117 YG~QwR~~~~~ 127 (295)
T 3ed7_A 117 YGFQWRHFGAE 127 (295)
T ss_dssp THHHHHHBTCC
T ss_pred hhhhhhccCCc
Confidence 36899999965
No 7
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=15.01 E-value=31 Score=20.08 Aligned_cols=11 Identities=45% Similarity=0.976 Sum_probs=7.8
Q ss_pred chhhhcCCccc
Q 029257 105 FKWRKYGKKSV 115 (196)
Q Consensus 105 y~WRKYGQK~I 115 (196)
..|+|.|+|..
T Consensus 13 mcwkkcgkk~~ 23 (26)
T 1ter_A 13 MCWKKCGKKXX 23 (26)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHhCcccc
Confidence 57999998865
No 8
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=14.89 E-value=29 Score=30.59 Aligned_cols=11 Identities=45% Similarity=1.386 Sum_probs=8.8
Q ss_pred CcchhhhcCCc
Q 029257 103 DGFKWRKYGKK 113 (196)
Q Consensus 103 DGy~WRKYGQK 113 (196)
=|++||.+|.+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 36899999864
No 9
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=12.70 E-value=63 Score=22.54 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=26.1
Q ss_pred CCcchhhhcCCcc--------cC--CCCCCCcccccCCCCCCcceeeeecCCCCcEEEEEEeeecCC
Q 029257 102 DDGFKWRKYGKKS--------VK--NSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNH 158 (196)
Q Consensus 102 dDGy~WRKYGQK~--------Ik--gs~~pRsYYrCs~~gC~akKqVqr~~~D~~~~~ttY~G~HnH 158 (196)
..++.|.|-|... ++ ...-||.+|.|... +.+.. ....+.|-|.=.+||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~-----~~~~~---~~s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT-----DIYKD---KESTVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC----------------CEEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCC-----CCCCc---ccEEEEEEhhhcCCc
Confidence 5668899887642 22 33459999999432 11110 012466777666655
No 10
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=9.37 E-value=3.8e+02 Score=19.61 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.7
Q ss_pred EEEEEEeeecCCCCCccc
Q 029257 147 YVITTYEGTHNHESPCVV 164 (196)
Q Consensus 147 ~~~ttY~G~HnH~~p~~~ 164 (196)
.+.|.|.|.|.-.+|...
T Consensus 82 ~I~V~~~g~~I~gSPF~v 99 (124)
T 2dmb_A 82 VIYVRFGGVDIPNSPFTV 99 (124)
T ss_dssp EEEEEESSCBCTTCSEEE
T ss_pred EEEEEECCEECCCCCeEE
Confidence 456889999999988766
Done!