Your job contains 1 sequence.
>029260
MSDEMGASVPINGSDRNGYVVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGL
RTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGG
EVDWEVGECLGMWWKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLA
VPLCQIHENHKVQFSL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029260
(196 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2123919 - symbol:CFIM-25 "homolog of CFIM-25" ... 692 3.5e-68 1
TAIR|locus:2131839 - symbol:AT4G25550 species:3702 "Arabi... 473 5.6e-45 1
UNIPROTKB|Q3ZCA2 - symbol:NUDT21 "Cleavage and polyadenyl... 379 5.1e-35 1
UNIPROTKB|E2QUJ4 - symbol:NUDT21 "Uncharacterized protein... 379 5.1e-35 1
UNIPROTKB|O43809 - symbol:NUDT21 "Cleavage and polyadenyl... 379 5.1e-35 1
UNIPROTKB|Q5RAI8 - symbol:NUDT21 "Cleavage and polyadenyl... 379 5.1e-35 1
UNIPROTKB|Q6DJE4 - symbol:cpsf5 "Cleavage and polyadenyla... 379 5.1e-35 1
MGI|MGI:1915469 - symbol:Nudt21 "nudix (nucleoside diphos... 379 5.1e-35 1
RGD|1305766 - symbol:Nudt21 "nudix (nucleoside diphosphat... 379 5.1e-35 1
UNIPROTKB|E2R7S0 - symbol:LOC100684233 "Uncharacterized p... 377 8.3e-35 1
ZFIN|ZDB-GENE-040426-1316 - symbol:cpsf5 "cleavage and po... 375 1.3e-34 1
UNIPROTKB|E1C538 - symbol:LOC100858636 "Uncharacterized p... 373 2.2e-34 1
DICTYBASE|DDB_G0269370 - symbol:DDB_G0269370 "cleavage an... 370 4.6e-34 1
WB|WBGene00009668 - symbol:cfim-1 species:6239 "Caenorhab... 370 4.6e-34 1
UNIPROTKB|Q93716 - symbol:cfim-1 "Protein CFIM-1" species... 370 4.6e-34 1
FB|FBgn0035987 - symbol:CG3689 species:7227 "Drosophila m... 363 2.5e-33 1
UNIPROTKB|H3BND3 - symbol:NUDT21 "Cleavage and polyadenyl... 314 3.9e-28 1
UNIPROTKB|I3LP27 - symbol:I3LP27 "Uncharacterized protein... 213 2.4e-24 2
ASPGD|ASPL0000011699 - symbol:AN8045 species:162425 "Emer... 277 3.3e-24 1
UNIPROTKB|I3LKQ2 - symbol:I3LKQ2 "Uncharacterized protein... 260 2.1e-22 1
UNIPROTKB|J9NUR8 - symbol:J9NUR8 "Uncharacterized protein... 228 5.1e-19 1
UNIPROTKB|H3BV41 - symbol:NUDT21 "Cleavage and polyadenyl... 159 1.0e-11 1
UNIPROTKB|J9P0U4 - symbol:J9P0U4 "Uncharacterized protein... 84 9.9e-07 2
>TAIR|locus:2123919 [details] [associations]
symbol:CFIM-25 "homolog of CFIM-25" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] [GO:0010260 "organ
senescence" evidence=RCA] InterPro:IPR015797 InterPro:IPR016706
Pfam:PF13869 PIRSF:PIRSF017888 EMBL:CP002687
GenomeReviews:CT486007_GR Gene3D:3.90.79.10 SUPFAM:SSF55811
GO:GO:0003729 GO:GO:0006378 GO:GO:0016787 GO:GO:0005849
HOGENOM:HOG000161320 KO:K14397 PANTHER:PTHR13047
ProtClustDB:CLSN2689678 EMBL:AY048229 EMBL:AY091704 EMBL:AY085984
IPI:IPI00532079 RefSeq:NP_567835.1 UniGene:At.26190 IntAct:Q94AF0
STRING:Q94AF0 EnsemblPlants:AT4G29820.1 GeneID:829104
KEGG:ath:AT4G29820 TAIR:At4g29820 eggNOG:NOG303614
InParanoid:Q94AF0 OMA:CIGMWWR Genevestigator:Q94AF0 Uniprot:Q94AF0
Length = 222
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 126/172 (73%), Positives = 145/172 (84%)
Query: 20 VVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLL 79
+VD+YPLSSYYFGSKEA+ KDE + +RV+R+KSNY AHGLRTCVEAVLLVELFKHPH+L
Sbjct: 28 MVDLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVL 87
Query: 80 LLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFE 139
LLQ RNSIFKLPGGRLRPGESDI GLKRKL KLS+N C+GMWW+P+FE
Sbjct: 88 LLQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFE 147
Query: 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHENHK 191
TL++P+ PPN+K PKECTKLFLV+LPV Q+F VPKN KLLAVPLCQ+HEN K
Sbjct: 148 TLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEK 199
>TAIR|locus:2131839 [details] [associations]
symbol:AT4G25550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888
EMBL:CP002687 GO:GO:0003729 GO:GO:0006378 GO:GO:0005849
HOGENOM:HOG000161320 KO:K14397 PANTHER:PTHR13047 OMA:CLAQWWR
EMBL:BT005519 EMBL:AK118070 EMBL:AK228476 IPI:IPI00539157
RefSeq:NP_194285.2 UniGene:At.44085 ProteinModelPortal:Q8GXS3
SMR:Q8GXS3 IntAct:Q8GXS3 STRING:Q8GXS3 PRIDE:Q8GXS3
EnsemblPlants:AT4G25550.1 GeneID:828660 KEGG:ath:AT4G25550
TAIR:At4g25550 InParanoid:Q8GXS3 PhylomeDB:Q8GXS3
ProtClustDB:CLSN2689678 Genevestigator:Q8GXS3 Uniprot:Q8GXS3
Length = 200
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 87/170 (51%), Positives = 120/170 (70%)
Query: 20 VVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLL 79
VV+ YPLS+Y FG+KE KD ++ +R+ RMK NY G+RT VE +LLV+ HPH+L
Sbjct: 6 VVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHIL 65
Query: 80 LLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFE 139
LLQ+ N+ KLPGGRL+PGE++ GLKRKLT KL N C+ WW+P+FE
Sbjct: 66 LLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFE 125
Query: 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
T+++PY PP++ +PKEC +L++V L + F VPKNLKLLAVPL ++++N
Sbjct: 126 TMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDN 175
>UNIPROTKB|Q3ZCA2 [details] [associations]
symbol:NUDT21 "Cleavage and polyadenylation specificity
factor subunit 5" species:9913 "Bos taurus" [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0042382 "paraspeckles"
evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0017091
"AU-rich element binding" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0051262 "protein tetramerization"
evidence=IEA] [GO:0042826 "histone deacetylase binding"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000086
InterPro:IPR015797 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS00893 PROSITE:PS51462 GO:GO:0005813
GO:GO:0051262 Gene3D:3.90.79.10 GO:GO:0003729 GO:GO:0006378
GO:GO:0017091 GO:GO:0016787 GO:GO:0005849 EMBL:BC102697
IPI:IPI00716517 RefSeq:NP_001030408.1 UniGene:Bt.103726
ProteinModelPortal:Q3ZCA2 SMR:Q3ZCA2 STRING:Q3ZCA2 PRIDE:Q3ZCA2
Ensembl:ENSBTAT00000013467 GeneID:518859 KEGG:bta:518859 CTD:11051
eggNOG:NOG294795 GeneTree:ENSGT00390000015814 HOGENOM:HOG000161320
HOVERGEN:HBG052968 InParanoid:Q3ZCA2 KO:K14397 OMA:ELNAGED
OrthoDB:EOG4QVCCS NextBio:20872752 GO:GO:0042382 PANTHER:PTHR13047
Uniprot:Q3ZCA2
Length = 227
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 73/169 (43%), Positives = 106/169 (62%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+LL
Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFET 140
LQ+ + FKLPGG L PGE ++ GLKR +T L C+G WW+P+FE
Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEP 155
Query: 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>UNIPROTKB|E2QUJ4 [details] [associations]
symbol:NUDT21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR000086 InterPro:IPR015797
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS51462
Gene3D:3.90.79.10 GO:GO:0003729 GO:GO:0006378 GO:GO:0016787
GO:GO:0005849 CTD:11051 GeneTree:ENSGT00390000015814 KO:K14397
PANTHER:PTHR13047 EMBL:AAEX03001584 RefSeq:XP_535298.2
ProteinModelPortal:E2QUJ4 SMR:E2QUJ4 PRIDE:E2QUJ4
Ensembl:ENSCAFT00000035716 GeneID:478123 KEGG:cfa:478123
OMA:AINRIIN NextBio:20853493 Uniprot:E2QUJ4
Length = 227
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 73/169 (43%), Positives = 106/169 (62%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+LL
Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFET 140
LQ+ + FKLPGG L PGE ++ GLKR +T L C+G WW+P+FE
Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEP 155
Query: 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>UNIPROTKB|O43809 [details] [associations]
symbol:NUDT21 "Cleavage and polyadenylation specificity
factor subunit 5" species:9606 "Homo sapiens" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IDA;TAS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042382
"paraspeckles" evidence=IDA] [GO:0042826 "histone deacetylase
binding" evidence=IPI] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005849
"mRNA cleavage factor complex" evidence=IDA] [GO:0051262 "protein
tetramerization" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_71 InterPro:IPR000086
InterPro:IPR015797 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS00893 PROSITE:PS51462 EMBL:AJ001810
GO:GO:0005813 GO:GO:0051262 Gene3D:3.90.79.10 Reactome:REACT_1675
GO:GO:0003729 GO:GO:0006378 GO:GO:0017091 GO:GO:0016787
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005849 CTD:11051 eggNOG:NOG294795 HOGENOM:HOG000161320
HOVERGEN:HBG052968 KO:K14397 OMA:ELNAGED OrthoDB:EOG4QVCCS
GO:GO:0042382 PANTHER:PTHR13047 EMBL:CR456919 EMBL:BX537360
EMBL:AC092140 EMBL:BC001403 IPI:IPI00646917 RefSeq:NP_008937.1
UniGene:Hs.528834 PDB:2CL3 PDB:2J8Q PDB:3BAP PDB:3BHO PDB:3MDG
PDB:3MDI PDB:3N9U PDB:3P5T PDB:3P6Y PDB:3Q2S PDB:3Q2T PDBsum:2CL3
PDBsum:2J8Q PDBsum:3BAP PDBsum:3BHO PDBsum:3MDG PDBsum:3MDI
PDBsum:3N9U PDBsum:3P5T PDBsum:3P6Y PDBsum:3Q2S PDBsum:3Q2T
ProteinModelPortal:O43809 SMR:O43809 DIP:DIP-42502N IntAct:O43809
MINT:MINT-5002263 STRING:O43809 PhosphoSite:O43809
UCD-2DPAGE:O43809 PaxDb:O43809 PeptideAtlas:O43809 PRIDE:O43809
DNASU:11051 Ensembl:ENST00000300291 GeneID:11051 KEGG:hsa:11051
UCSC:uc002eja.3 GeneCards:GC16M056463 HGNC:HGNC:13870 HPA:HPA019863
MIM:604978 neXtProt:NX_O43809 PharmGKB:PA26845 InParanoid:O43809
PhylomeDB:O43809 ChiTaRS:NUDT21 EvolutionaryTrace:O43809
GenomeRNAi:11051 NextBio:41991 ArrayExpress:O43809 Bgee:O43809
CleanEx:HS_NUDT21 Genevestigator:O43809 GermOnline:ENSG00000167005
Uniprot:O43809
Length = 227
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 73/169 (43%), Positives = 106/169 (62%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+LL
Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFET 140
LQ+ + FKLPGG L PGE ++ GLKR +T L C+G WW+P+FE
Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEP 155
Query: 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>UNIPROTKB|Q5RAI8 [details] [associations]
symbol:NUDT21 "Cleavage and polyadenylation specificity
factor subunit 5" species:9601 "Pongo abelii" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0017091 "AU-rich
element binding" evidence=ISS] [GO:0042382 "paraspeckles"
evidence=ISS] InterPro:IPR000086 InterPro:IPR015797
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS00893
PROSITE:PS51462 GO:GO:0005813 GO:GO:0051262 Gene3D:3.90.79.10
GO:GO:0003729 GO:GO:0006378 GO:GO:0017091 GO:GO:0016787
GO:GO:0005849 CTD:11051 GeneTree:ENSGT00390000015814
HOVERGEN:HBG052968 KO:K14397 OMA:ELNAGED GO:GO:0042382
PANTHER:PTHR13047 EMBL:CR859027 RefSeq:NP_001125721.1
UniGene:Pab.233 ProteinModelPortal:Q5RAI8 SMR:Q5RAI8 PRIDE:Q5RAI8
Ensembl:ENSPPYT00000008659 GeneID:100172645 KEGG:pon:100172645
InParanoid:Q5RAI8 Uniprot:Q5RAI8
Length = 227
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 73/169 (43%), Positives = 106/169 (62%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+LL
Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFET 140
LQ+ + FKLPGG L PGE ++ GLKR +T L C+G WW+P+FE
Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEP 155
Query: 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>UNIPROTKB|Q6DJE4 [details] [associations]
symbol:cpsf5 "Cleavage and polyadenylation specificity
factor subunit 5" species:8355 "Xenopus laevis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0017091 "AU-rich
element binding" evidence=ISS] [GO:0042382 "paraspeckles"
evidence=ISS] InterPro:IPR000086 InterPro:IPR015797
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS00893
PROSITE:PS51462 Gene3D:3.90.79.10 GO:GO:0003729 GO:GO:0006378
GO:GO:0017091 GO:GO:0016787 GO:GO:0005849 CTD:11051
HOVERGEN:HBG052968 KO:K14397 GO:GO:0042382 PANTHER:PTHR13047
EMBL:BC075235 RefSeq:NP_001086401.1 UniGene:Xl.77967
ProteinModelPortal:Q6DJE4 SMR:Q6DJE4 GeneID:444830 KEGG:xla:444830
Xenbase:XB-GENE-921424 Uniprot:Q6DJE4
Length = 227
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 73/169 (43%), Positives = 106/169 (62%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+LL
Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFET 140
LQ+ + FKLPGG L PGE ++ GLKR +T L C+G WW+P+FE
Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVQQDWVIDDCIGNWWRPNFEP 155
Query: 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>MGI|MGI:1915469 [details] [associations]
symbol:Nudt21 "nudix (nucleoside diphosphate linked moiety
X)-type motif 21" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005849 "mRNA cleavage
factor complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0042382 "paraspeckles" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0042826 "histone
deacetylase binding" evidence=ISO] [GO:0051262 "protein
tetramerization" evidence=ISO] InterPro:IPR000086
InterPro:IPR015797 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS00893 PROSITE:PS51462 MGI:MGI:1915469
GO:GO:0005813 GO:GO:0051262 Gene3D:3.90.79.10 GO:GO:0003729
GO:GO:0006378 GO:GO:0017091 GO:GO:0016787 GO:GO:0005849 CTD:11051
eggNOG:NOG294795 GeneTree:ENSGT00390000015814 HOGENOM:HOG000161320
HOVERGEN:HBG052968 KO:K14397 OMA:ELNAGED OrthoDB:EOG4QVCCS
GO:GO:0042382 PANTHER:PTHR13047 EMBL:AK011688 EMBL:AK019433
EMBL:AK146419 EMBL:AK147061 EMBL:AK160147 EMBL:BC008270
EMBL:BC090834 IPI:IPI00132473 RefSeq:NP_080899.1 UniGene:Mm.354445
UniGene:Mm.432611 ProteinModelPortal:Q9CQF3 SMR:Q9CQF3
STRING:Q9CQF3 PhosphoSite:Q9CQF3 PaxDb:Q9CQF3 PRIDE:Q9CQF3
Ensembl:ENSMUST00000034204 GeneID:68219 KEGG:mmu:68219
UCSC:uc009mvo.1 InParanoid:Q9CQF3 NextBio:326730 Bgee:Q9CQF3
Genevestigator:Q9CQF3 GermOnline:ENSMUSG00000031754
GermOnline:ENSMUSG00000039617 Uniprot:Q9CQF3
Length = 227
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 73/169 (43%), Positives = 106/169 (62%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+LL
Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFET 140
LQ+ + FKLPGG L PGE ++ GLKR +T L C+G WW+P+FE
Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEP 155
Query: 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>RGD|1305766 [details] [associations]
symbol:Nudt21 "nudix (nucleoside diphosphate linked moiety
X)-type motif 21" species:10116 "Rattus norvegicus" [GO:0003729
"mRNA binding" evidence=ISO;ISS] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005813 "centrosome" evidence=IEA;ISO]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO;ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISO;ISS] [GO:0006397
"mRNA processing" evidence=ISO;ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=ISO;ISS] [GO:0042382 "paraspeckles" evidence=ISO;ISS]
[GO:0042803 "protein homodimerization activity" evidence=IEA;ISO]
[GO:0042826 "histone deacetylase binding" evidence=IEA;ISO]
[GO:0051262 "protein tetramerization" evidence=IEA;ISO] [GO:0003723
"RNA binding" evidence=ISO] InterPro:IPR000086 InterPro:IPR015797
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS00893
PROSITE:PS51462 RGD:1305766 GO:GO:0005813 GO:GO:0051262
Gene3D:3.90.79.10 GO:GO:0003729 GO:GO:0006378 GO:GO:0017091
GO:GO:0016787 GO:GO:0005849 CTD:11051 eggNOG:NOG294795
GeneTree:ENSGT00390000015814 HOGENOM:HOG000161320
HOVERGEN:HBG052968 KO:K14397 OMA:ELNAGED OrthoDB:EOG4QVCCS
GO:GO:0042382 PANTHER:PTHR13047 EMBL:BC098748 IPI:IPI00363489
RefSeq:NP_001034093.1 UniGene:Rn.199052 ProteinModelPortal:Q4KM65
SMR:Q4KM65 STRING:Q4KM65 PhosphoSite:Q4KM65 PRIDE:Q4KM65
Ensembl:ENSRNOT00000026297 GeneID:291877 KEGG:rno:291877
UCSC:RGD:1305766 NextBio:633328 ArrayExpress:Q4KM65
Genevestigator:Q4KM65 GermOnline:ENSRNOG00000019444 Uniprot:Q4KM65
Length = 227
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 73/169 (43%), Positives = 106/169 (62%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+LL
Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFET 140
LQ+ + FKLPGG L PGE ++ GLKR +T L C+G WW+P+FE
Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEP 155
Query: 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>UNIPROTKB|E2R7S0 [details] [associations]
symbol:LOC100684233 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000086
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS51462
GO:GO:0003729 GO:GO:0006378 GO:GO:0016787 GO:GO:0005849
GeneTree:ENSGT00390000015814 PANTHER:PTHR13047 EMBL:AAEX03008462
Ensembl:ENSCAFT00000004206 OMA:THTLERT Uniprot:E2R7S0
Length = 234
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 73/169 (43%), Positives = 106/169 (62%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+LL
Sbjct: 44 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHQLPHVLL 103
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFET 140
LQ+ + FKLPGG L PGE ++ GLKR +T L C+G WW+P+FE
Sbjct: 104 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEH 162
Query: 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 163 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 211
>ZFIN|ZDB-GENE-040426-1316 [details] [associations]
symbol:cpsf5 "cleavage and polyadenylation
specific factor 5" species:7955 "Danio rerio" [GO:0003729 "mRNA
binding" evidence=IEA;ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IEA;ISS] [GO:0006378 "mRNA polyadenylation"
evidence=IEA;ISS] [GO:0017091 "AU-rich element binding"
evidence=ISS] [GO:0042382 "paraspeckles" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000086 InterPro:IPR015797 InterPro:IPR016706
Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS00893 PROSITE:PS51462
ZFIN:ZDB-GENE-040426-1316 Gene3D:3.90.79.10 GO:GO:0003729
GO:GO:0006378 GO:GO:0017091 GO:GO:0016787 GO:GO:0005849
eggNOG:NOG294795 GeneTree:ENSGT00390000015814 HOGENOM:HOG000161320
HOVERGEN:HBG052968 KO:K14397 OrthoDB:EOG4QVCCS GO:GO:0042382
PANTHER:PTHR13047 EMBL:BC053172 IPI:IPI00508751 RefSeq:NP_957411.1
UniGene:Dr.80520 ProteinModelPortal:Q7T3C6 SMR:Q7T3C6 STRING:Q7T3C6
PRIDE:Q7T3C6 Ensembl:ENSDART00000023721 GeneID:394092
KEGG:dre:394092 CTD:394092 InParanoid:Q7T3C6 OMA:CLAQWWR
NextBio:20815048 ArrayExpress:Q7T3C6 Bgee:Q7T3C6 Uniprot:Q7T3C6
Length = 228
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 72/169 (42%), Positives = 106/169 (62%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + KD ++ R RM+ ++ G+R VE VL+V + PH+LL
Sbjct: 38 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLL 97
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFET 140
LQ+ + FKLPGG L PGE ++ GLKR +T L C+G WW+P+FE
Sbjct: 98 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVKQDWVIDDCIGNWWRPNFEP 156
Query: 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 205
>UNIPROTKB|E1C538 [details] [associations]
symbol:LOC100858636 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042826 "histone
deacetylase binding" evidence=IEA] [GO:0051262 "protein
tetramerization" evidence=IEA] InterPro:IPR000086
InterPro:IPR015797 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS51462 GO:GO:0005813 GO:GO:0051262
Gene3D:3.90.79.10 GO:GO:0003729 GO:GO:0006378 GO:GO:0017091
GO:GO:0016787 GO:GO:0005849 GeneTree:ENSGT00390000015814
GO:GO:0042382 PANTHER:PTHR13047 OMA:CLAQWWR EMBL:AADN02051558
EMBL:AADN02051559 EMBL:AADN02051560 IPI:IPI00574813
Ensembl:ENSGALT00000004875 Uniprot:E1C538
Length = 206
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 72/169 (42%), Positives = 105/169 (62%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+LL
Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFET 140
LQ+ + FKLPGG L PGE ++ GLKR +T L C+G WW+P+FE
Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVQQDWVIDDCIGNWWRPNFEP 155
Query: 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN K +A PL ++++N
Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKRVAAPLFELYDN 204
>DICTYBASE|DDB_G0269370 [details] [associations]
symbol:DDB_G0269370 "cleavage and polyadenylation
specificity factor 5-like protein" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA;ISS] [GO:0005849
"mRNA cleavage factor complex" evidence=IEA;ISS] [GO:0003729 "mRNA
binding" evidence=IEA;ISS] [GO:0017091 "AU-rich element binding"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000086 InterPro:IPR015797
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS00893
PROSITE:PS51462 dictyBase:DDB_G0269370 EMBL:AAFI02000005
GenomeReviews:CM000150_GR Gene3D:3.90.79.10 SUPFAM:SSF55811
GO:GO:0003729 GO:GO:0006378 GO:GO:0017091 GO:GO:0016787
GO:GO:0005849 eggNOG:NOG294795 KO:K14397 OMA:ELNAGED
PANTHER:PTHR13047 RefSeq:XP_645913.1 HSSP:O43809
ProteinModelPortal:Q55E68 STRING:Q55E68 EnsemblProtists:DDB0233564
GeneID:8616854 KEGG:ddi:DDB_G0269370 ProtClustDB:CLSZ2729278
Uniprot:Q55E68
Length = 200
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 75/164 (45%), Positives = 106/164 (64%)
Query: 27 SSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLLLQVRNS 86
+SY FG KE K+++L +++ R+K +Y+ GLR VE ++++ HPH+LLLQ N+
Sbjct: 13 TSYSFG-KEEKKEKEQSLTSKLARLKDSYEKEGLRKAVEGIIIIHDHGHPHILLLQ-DNN 70
Query: 87 IFKLPGGRLRPGESDIYGLKRKLTRKLS-LNXXXXXXXXXXXXCLGMWWKPDFETLLFPY 145
FKLPGG+L+PGE++I GL RKLT+KLS + WW+P+FE LFPY
Sbjct: 71 YFKLPGGKLKPGENEIDGLIRKLTKKLSPTGTPVSDAPWEIGDHVSTWWRPNFEPSLFPY 130
Query: 146 FPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
P ++ +PKEC KLF+V LP KF V NL L+AV L +I+ N
Sbjct: 131 IPSHITKPKECKKLFVVTLPEKCKFAVSNNLSLIAVSLYEIYNN 174
>WB|WBGene00009668 [details] [associations]
symbol:cfim-1 species:6239 "Caenorhabditis elegans"
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0005849 "mRNA cleavage
factor complex" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000086 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS51462 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016246 GO:GO:0003729 GO:GO:0006378
GO:GO:0040011 GO:GO:0016787 GO:GO:0040035 GO:GO:0005849
eggNOG:NOG294795 GeneTree:ENSGT00390000015814 HOGENOM:HOG000161320
KO:K14397 PANTHER:PTHR13047 OMA:CLAQWWR EMBL:Z79755 PIR:T22144
RefSeq:NP_492334.1 ProteinModelPortal:Q93716 SMR:Q93716
DIP:DIP-25083N IntAct:Q93716 MINT:MINT-1069440 STRING:Q93716
PaxDb:Q93716 EnsemblMetazoa:F43G9.5 GeneID:172657
KEGG:cel:CELE_F43G9.5 UCSC:F43G9.5 CTD:172657 WormBase:F43G9.5
InParanoid:Q93716 NextBio:876453 Uniprot:Q93716
Length = 227
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 10 PINGSDRNGY--VVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAV 67
P N ++ + +++YPL++Y FG+K+A KD+++ R RMK Y+ G+R VEAV
Sbjct: 21 PANFDEKPPFNRTINVYPLTNYTFGTKDAQAEKDKSVPERFKRMKDEYEVMGMRRSVEAV 80
Query: 68 LLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXX 127
L+V PH+LLLQ+ + +KLPGG L GE +I G+ R L L
Sbjct: 81 LIVHEHSLPHILLLQIGTTFYKLPGGELELGEDEISGVTRLLNETLGRTDGETNEWTIED 140
Query: 128 XCLGMWWKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIH 187
+G WW+P+F+ +PY P +V +PKE TKL LV+LP F VPKN KL+A PL +++
Sbjct: 141 E-IGNWWRPNFDPPRYPYIPAHVTKPKEHTKLLLVQLPSKSTFCVPKNFKLVAAPLFELY 199
Query: 188 EN 189
+N
Sbjct: 200 DN 201
>UNIPROTKB|Q93716 [details] [associations]
symbol:cfim-1 "Protein CFIM-1" species:6239 "Caenorhabditis
elegans" [GO:0042802 "identical protein binding" evidence=IPI]
InterPro:IPR000086 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS51462 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016246 GO:GO:0003729 GO:GO:0006378
GO:GO:0040011 GO:GO:0016787 GO:GO:0040035 GO:GO:0005849
eggNOG:NOG294795 GeneTree:ENSGT00390000015814 HOGENOM:HOG000161320
KO:K14397 PANTHER:PTHR13047 OMA:CLAQWWR EMBL:Z79755 PIR:T22144
RefSeq:NP_492334.1 ProteinModelPortal:Q93716 SMR:Q93716
DIP:DIP-25083N IntAct:Q93716 MINT:MINT-1069440 STRING:Q93716
PaxDb:Q93716 EnsemblMetazoa:F43G9.5 GeneID:172657
KEGG:cel:CELE_F43G9.5 UCSC:F43G9.5 CTD:172657 WormBase:F43G9.5
InParanoid:Q93716 NextBio:876453 Uniprot:Q93716
Length = 227
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 10 PINGSDRNGY--VVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAV 67
P N ++ + +++YPL++Y FG+K+A KD+++ R RMK Y+ G+R VEAV
Sbjct: 21 PANFDEKPPFNRTINVYPLTNYTFGTKDAQAEKDKSVPERFKRMKDEYEVMGMRRSVEAV 80
Query: 68 LLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXX 127
L+V PH+LLLQ+ + +KLPGG L GE +I G+ R L L
Sbjct: 81 LIVHEHSLPHILLLQIGTTFYKLPGGELELGEDEISGVTRLLNETLGRTDGETNEWTIED 140
Query: 128 XCLGMWWKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIH 187
+G WW+P+F+ +PY P +V +PKE TKL LV+LP F VPKN KL+A PL +++
Sbjct: 141 E-IGNWWRPNFDPPRYPYIPAHVTKPKEHTKLLLVQLPSKSTFCVPKNFKLVAAPLFELY 199
Query: 188 EN 189
+N
Sbjct: 200 DN 201
>FB|FBgn0035987 [details] [associations]
symbol:CG3689 species:7227 "Drosophila melanogaster"
[GO:0005849 "mRNA cleavage factor complex" evidence=ISS]
[GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR000086
InterPro:IPR015797 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS51462 EMBL:AE014296 Gene3D:3.90.79.10
GO:GO:0003729 GO:GO:0006378 GO:GO:0016787 GO:GO:0006379
GO:GO:0005849 eggNOG:NOG294795 GeneTree:ENSGT00390000015814
KO:K14397 OMA:ELNAGED PANTHER:PTHR13047 RefSeq:NP_001036597.1
UniGene:Dm.1951 ProteinModelPortal:Q0E8G6 SMR:Q0E8G6 STRING:Q0E8G6
PaxDb:Q0E8G6 PRIDE:Q0E8G6 EnsemblMetazoa:FBtr0110863 GeneID:39083
KEGG:dme:Dmel_CG3689 UCSC:CG3689-RC FlyBase:FBgn0035987
OrthoDB:EOG47M0DX PhylomeDB:Q0E8G6 GenomeRNAi:39083 NextBio:811825
Bgee:Q0E8G6 Uniprot:Q0E8G6
Length = 237
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 72/169 (42%), Positives = 105/169 (62%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + KD ++ +R RM+ +D G+R VE VLLV PH+LL
Sbjct: 47 INLYPLTNYTFGTKEPLFEKDPSVPSRFQRMREEFDRIGMRRSVEGVLLVHEHGLPHVLL 106
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFET 140
LQ+ + FKLPGG L GE ++ GLKR L+ L +G WW+P+FE
Sbjct: 107 LQLGTTFFKLPGGELNAGEDEVEGLKRLLSETLGRQDGVKQEWIVEDT-IGNWWRPNFEP 165
Query: 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY PP++ +PKE +LFLV+L F VPKN KL+A PL ++++N
Sbjct: 166 PQYPYIPPHITKPKEHKRLFLVQLHEKALFAVPKNYKLVAAPLFELYDN 214
>UNIPROTKB|H3BND3 [details] [associations]
symbol:NUDT21 "Cleavage and polyadenylation-specificity
factor subunit 5" species:9606 "Homo sapiens" [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000086
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS51462
GO:GO:0003729 GO:GO:0006378 GO:GO:0016787 GO:GO:0005849
PANTHER:PTHR13047 EMBL:AC092140 HGNC:HGNC:13870 ChiTaRS:NUDT21
Ensembl:ENST00000566340 Bgee:H3BND3 Uniprot:H3BND3
Length = 150
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 61/139 (43%), Positives = 85/139 (61%)
Query: 51 MKSNYDAHGLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLT 110
M+ +D G+R VE VL+V + PH+LLLQ+ + FKLPGG L PGE ++ GLKR +T
Sbjct: 1 MREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMT 60
Query: 111 RKLSLNXXXXXXXXXXXXCLGMWWKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKF 170
L C+G WW+P+FE +PY P ++ +PKE KLFLV+L F
Sbjct: 61 EILG-RQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALF 119
Query: 171 FVPKNLKLLAVPLCQIHEN 189
VPKN KL+A PL ++++N
Sbjct: 120 AVPKNYKLVAAPLFELYDN 138
>UNIPROTKB|I3LP27 [details] [associations]
symbol:I3LP27 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR016706
Pfam:PF13869 PIRSF:PIRSF017888 GO:GO:0003729 GO:GO:0006378
GO:GO:0005849 GeneTree:ENSGT00390000015814 PANTHER:PTHR13047
Ensembl:ENSSSCT00000031686 Uniprot:I3LP27
Length = 212
Score = 213 (80.0 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 43/117 (36%), Positives = 67/117 (57%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + +KD ++ R M+ +D G+R VE VL+V + PH+LL
Sbjct: 43 INLYPLTNYTFGTKEPL-YKDSSVATRFQHMREEFDKIGMRRTVEGVLIVHEHQLPHVLL 101
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPD 137
LQ+ + FKLPGG L E ++ G K +T L C+G WW+P+
Sbjct: 102 LQLETTFFKLPGGELNTREDEV-GQKHLMTEILGCQDGVLQDWVIDD-CIGNWWRPN 156
Score = 80 (33.2 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 152 RPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
RP + KLF V+L F +PKN KL+A PL ++++N
Sbjct: 154 RPNQ--KLFWVQLQEKALFAIPKNYKLVAAPLFELYDN 189
>ASPGD|ASPL0000011699 [details] [associations]
symbol:AN8045 species:162425 "Emericella nidulans"
[GO:0006378 "mRNA polyadenylation" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888
GO:GO:0003729 GO:GO:0006378 EMBL:BN001302 GO:GO:0005849
PANTHER:PTHR13047 OMA:CLAQWWR EnsemblFungi:CADANIAT00004066
Uniprot:C8V609
Length = 275
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 60/187 (32%), Positives = 101/187 (54%)
Query: 10 PINGSDRNGYVVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLL 69
P + S + + +YPLS+Y FG+KE P +D ++ R+ R++ +Y+ HG+R E +L+
Sbjct: 18 PKDFSAKQPETIRLYPLSNYTFGTKETQPEEDPSVLARLKRLEEHYEKHGMRRTCEGILV 77
Query: 70 VELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLS-----LNXXXXXXXX 124
HPH+L+LQ+ N+ FKLPG L + +I G KR+L +L+ +
Sbjct: 78 CHEHNHPHVLMLQIANAFFKLPGDYLLHDDDEIEGFKRRLNERLAPVGSQFSGEGVNEDW 137
Query: 125 XXXXCLGMWWKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLC 184
L WW+P+FET + C ++ ++ VPKN+KLLAVPL
Sbjct: 138 EIGDTLAQWWRPNFETFIKDQMSLVGHDMLMCLRV------AAEVLSVPKNMKLLAVPLF 191
Query: 185 QIHENHK 191
++++N++
Sbjct: 192 ELYDNNQ 198
>UNIPROTKB|I3LKQ2 [details] [associations]
symbol:I3LKQ2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] [GO:0005849 "mRNA cleavage
factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR015797 InterPro:IPR016706 Pfam:PF13869
Gene3D:3.90.79.10 GO:GO:0003729 GO:GO:0006378 GO:GO:0016787
GO:GO:0005849 GeneTree:ENSGT00390000015814 PANTHER:PTHR13047
Ensembl:ENSSSCT00000032045 OMA:XFNFIYN Uniprot:I3LKQ2
Length = 174
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 50/119 (42%), Positives = 73/119 (61%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLL 80
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+LL
Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96
Query: 81 LQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDFE 139
LQ+ + FKLPGG L PGE ++ GLKR +T L C+G WW+P+FE
Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFE 154
>UNIPROTKB|J9NUR8 [details] [associations]
symbol:J9NUR8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR016706
Pfam:PF13869 GO:GO:0003729 GO:GO:0006378 GO:GO:0005849
GeneTree:ENSGT00390000015814 PANTHER:PTHR13047 EMBL:AAEX03009929
Ensembl:ENSCAFT00000009953 Uniprot:J9NUR8
Length = 194
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 58/171 (33%), Positives = 91/171 (53%)
Query: 19 YVVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHL 78
+ +++YPL++Y FG++EA+ KD ++ R M+ +D G+R VE VL ++ +H
Sbjct: 15 HTLNLYPLTNYTFGTQEALYEKDSSVAARFQHMREEFDKIGMRKTVEGVLRIQ--EH--- 69
Query: 79 LLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNXXXXXXXXXXXXCLGMWWKPDF 138
Q+ + FKLPG L PGE ++ GLKR L ++ C+G + +F
Sbjct: 70 ---QLGTAFFKLPGCELNPGEDEVEGLKR-LMMEIRGGQDGILQDWVIEDCIGNV-ETNF 124
Query: 139 ETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
E +PY P +PKE KLFLV L F V KN L + L ++++N
Sbjct: 125 EPPQYPYIPAPCTKPKELKKLFLVHLQEKVWFAVLKNYYLNYMTLLELYDN 175
>UNIPROTKB|H3BV41 [details] [associations]
symbol:NUDT21 "Cleavage and polyadenylation-specificity
factor subunit 5" species:9606 "Homo sapiens" [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
InterPro:IPR016706 Pfam:PF13869 GO:GO:0003729 GO:GO:0006378
GO:GO:0005849 PANTHER:PTHR13047 EMBL:AC092140 HGNC:HGNC:13870
ChiTaRS:NUDT21 Ensembl:ENST00000568822 Bgee:H3BV41 Uniprot:H3BV41
Length = 71
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 51 MKSNYDAHGLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLT 110
M+ +D G+R VE VL+V + PH+LLLQ+ + FKLPGG L PGE ++ GLKR +T
Sbjct: 1 MREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMT 60
Query: 111 RKL 113
L
Sbjct: 61 EIL 63
>UNIPROTKB|J9P0U4 [details] [associations]
symbol:J9P0U4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR016706
Pfam:PF13869 GO:GO:0003729 GO:GO:0006378 GO:GO:0005849
GeneTree:ENSGT00390000015814 PANTHER:PTHR13047 EMBL:AAEX03005389
Ensembl:ENSCAFT00000046484 Uniprot:J9P0U4
Length = 168
Score = 84 (34.6 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 138 FETLLFPYFP---PNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
++ L FP +P ++ +PKE KLFLV+L FV N KL+A P ++H +
Sbjct: 113 YQILNFPRYPWISADITQPKE-HKLFLVQLQ-EDALFVVSNYKLVAAPFFELHND 165
Score = 78 (32.5 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 21 VDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLV 70
V++YPLS+ FG K+ + +KD ++ R M +D G +E VL+V
Sbjct: 37 VNLYPLSNNTFGIKKFL-YKDNSVATRFHCMNEEFDKIGKSRIIEGVLIV 85
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.142 0.441 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 196 184 0.00078 110 3 11 22 0.40 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 597 (63 KB)
Total size of DFA: 165 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.74u 0.08s 14.82t Elapsed: 00:00:02
Total cpu time: 14.74u 0.08s 14.82t Elapsed: 00:00:02
Start: Fri May 10 12:24:10 2013 End: Fri May 10 12:24:12 2013