BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029260
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DJE4|CPSF5_XENLA Cleavage and polyadenylation specificity factor subunit 5
OS=Xenopus laevis GN=cpsf5 PE=2 SV=1
Length = 227
Score = 163 bits (413), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 20 VVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLL 79
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+L
Sbjct: 36 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVL 95
Query: 80 LLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFE 139
LLQ+ + FKLPGG L PGE ++ GLKR +T L +DG + DW + +C+G WW+P+FE
Sbjct: 96 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVQQDWVIDDCIGNWWRPNFE 154
Query: 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 155 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>sp|Q5RAI8|CPSF5_PONAB Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo
abelii GN=NUDT21 PE=2 SV=1
Length = 227
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 113/170 (66%), Gaps = 1/170 (0%)
Query: 20 VVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLL 79
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+L
Sbjct: 36 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVL 95
Query: 80 LLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFE 139
LLQ+ + FKLPGG L PGE ++ GLKR +T L +DG DW + +C+G WW+P+FE
Sbjct: 96 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFE 154
Query: 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 155 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>sp|O43809|CPSF5_HUMAN Cleavage and polyadenylation specificity factor subunit 5 OS=Homo
sapiens GN=NUDT21 PE=1 SV=1
Length = 227
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 113/170 (66%), Gaps = 1/170 (0%)
Query: 20 VVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLL 79
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+L
Sbjct: 36 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVL 95
Query: 80 LLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFE 139
LLQ+ + FKLPGG L PGE ++ GLKR +T L +DG DW + +C+G WW+P+FE
Sbjct: 96 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFE 154
Query: 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 155 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>sp|Q3ZCA2|CPSF5_BOVIN Cleavage and polyadenylation specificity factor subunit 5 OS=Bos
taurus GN=NUDT21 PE=2 SV=1
Length = 227
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 113/170 (66%), Gaps = 1/170 (0%)
Query: 20 VVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLL 79
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+L
Sbjct: 36 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVL 95
Query: 80 LLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFE 139
LLQ+ + FKLPGG L PGE ++ GLKR +T L +DG DW + +C+G WW+P+FE
Sbjct: 96 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFE 154
Query: 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 155 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>sp|Q4KM65|CPSF5_RAT Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus
norvegicus GN=Nudt21 PE=2 SV=1
Length = 227
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 113/170 (66%), Gaps = 1/170 (0%)
Query: 20 VVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLL 79
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+L
Sbjct: 36 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVL 95
Query: 80 LLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFE 139
LLQ+ + FKLPGG L PGE ++ GLKR +T L +DG DW + +C+G WW+P+FE
Sbjct: 96 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFE 154
Query: 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 155 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>sp|Q9CQF3|CPSF5_MOUSE Cleavage and polyadenylation specificity factor subunit 5 OS=Mus
musculus GN=Nudt21 PE=2 SV=1
Length = 227
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 113/170 (66%), Gaps = 1/170 (0%)
Query: 20 VVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLL 79
+++YPL++Y FG+KE + KD ++ R RM+ +D G+R VE VL+V + PH+L
Sbjct: 36 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVL 95
Query: 80 LLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFE 139
LLQ+ + FKLPGG L PGE ++ GLKR +T L +DG DW + +C+G WW+P+FE
Sbjct: 96 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFE 154
Query: 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 155 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204
>sp|Q7T3C6|CPSF5_DANRE Cleavage and polyadenylation specificity factor subunit 5 OS=Danio
rerio GN=cpsf5 PE=2 SV=1
Length = 228
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 20 VVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLL 79
+++YPL++Y FG+KE + KD ++ R RM+ ++ G+R VE VL+V + PH+L
Sbjct: 37 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVL 96
Query: 80 LLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFE 139
LLQ+ + FKLPGG L PGE ++ GLKR +T L +DG + DW + +C+G WW+P+FE
Sbjct: 97 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVKQDWVIDDCIGNWWRPNFE 155
Query: 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHEN 189
+PY P ++ +PKE KLFLV+L F VPKN KL+A PL ++++N
Sbjct: 156 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDN 205
>sp|Q55E68|CPSF5_DICDI Cleavage and polyadenylation specificity factor subunit 5
OS=Dictyostelium discoideum GN=cpsf5 PE=3 SV=1
Length = 200
Score = 150 bits (378), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 113/166 (68%), Gaps = 3/166 (1%)
Query: 27 SSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLLLQVRNS 86
+SY FG +E K+++L +++ R+K +Y+ GLR VE ++++ HPH+LLLQ N+
Sbjct: 13 TSYSFGKEEKK-EKEQSLTSKLARLKDSYEKEGLRKAVEGIIIIHDHGHPHILLLQ-DNN 70
Query: 87 IFKLPGGRLRPGESDIYGLKRKLTRKLS-LNEDGGEVDWEVGECLGMWWKPDFETLLFPY 145
FKLPGG+L+PGE++I GL RKLT+KLS + WE+G+ + WW+P+FE LFPY
Sbjct: 71 YFKLPGGKLKPGENEIDGLIRKLTKKLSPTGTPVSDAPWEIGDHVSTWWRPNFEPSLFPY 130
Query: 146 FPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIHENHK 191
P ++ +PKEC KLF+V LP KF V NL L+AV L +I+ N +
Sbjct: 131 IPSHITKPKECKKLFVVTLPEKCKFAVSNNLSLIAVSLYEIYNNSQ 176
>sp|Q2YBW4|RPPH_NITMU RNA pyrophosphohydrolase OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=rppH PE=3 SV=1
Length = 187
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 56 DAHGLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115
D +G R+ V +LL K+ ++R ++ P G ++PGES + R+LT ++ L
Sbjct: 3 DRNGYRSNVGIILLNS--KNEVFWGKRIRQDSWQFPQGGIKPGESPEQAMYRELTEEVGL 60
>sp|Q1RLU9|CDK15_DANRE Cyclin-dependent kinase 15 OS=Danio rerio GN=cdk15 PE=2 SV=1
Length = 418
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 37 IPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKH--PHLLLLQVRNSIFKLPGGR 94
+P+K E L ++L M R + LL F P L+ L+ SIFK+PG R
Sbjct: 338 LPYKTEDLAQQMLMMNPKD-----RISAQDALLHPYFNTLPPPLMHLRDTVSIFKVPGVR 392
Query: 95 LRPGESDIYGLKRKLTRKLS 114
L DI+ R+ L+
Sbjct: 393 LESEARDIFSPSRRTKTPLA 412
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.142 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,898,677
Number of Sequences: 539616
Number of extensions: 3321364
Number of successful extensions: 6310
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6293
Number of HSP's gapped (non-prelim): 14
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)