Query 029260
Match_columns 196
No_of_seqs 161 out of 196
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 10:03:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13869 NUDIX_2: Nucleotide h 100.0 1.1E-85 2.4E-90 551.4 15.4 176 19-195 1-176 (188)
2 KOG1689 mRNA cleavage factor I 100.0 6.8E-86 1.5E-90 547.8 13.4 183 12-195 16-202 (221)
3 cd03428 Ap4A_hydrolase_human_l 99.3 2.1E-11 4.6E-16 92.7 8.9 57 60-116 1-57 (130)
4 cd04688 Nudix_Hydrolase_29 Mem 99.2 2E-10 4.2E-15 87.5 11.1 87 62-168 2-89 (126)
5 cd03673 Ap6A_hydrolase Diadeno 99.2 2.3E-10 5.1E-15 86.2 10.9 65 61-132 1-66 (131)
6 cd04684 Nudix_Hydrolase_25 Con 99.2 2.4E-10 5.2E-15 85.9 10.4 107 63-187 2-115 (128)
7 PRK09438 nudB dihydroneopterin 99.2 2.8E-10 6.2E-15 89.3 10.6 53 61-116 7-61 (148)
8 cd04679 Nudix_Hydrolase_20 Mem 99.1 5.9E-10 1.3E-14 84.7 11.0 53 61-116 2-58 (125)
9 PRK15434 GDP-mannose mannosyl 99.1 1.9E-10 4.1E-15 94.0 8.5 65 60-132 16-84 (159)
10 PF00293 NUDIX: NUDIX domain; 99.1 4.8E-10 1E-14 84.0 10.1 92 62-174 2-101 (134)
11 PRK15472 nucleoside triphospha 99.1 2.7E-10 5.9E-15 88.8 8.2 51 62-115 4-60 (141)
12 cd04669 Nudix_Hydrolase_11 Mem 99.1 2.8E-10 6.2E-15 87.0 7.8 49 77-132 13-64 (121)
13 cd04687 Nudix_Hydrolase_28 Mem 99.1 1.2E-09 2.6E-14 83.6 11.2 52 61-116 1-55 (128)
14 cd04670 Nudix_Hydrolase_12 Mem 99.1 4.8E-10 1E-14 85.5 8.7 61 62-132 3-66 (127)
15 cd04667 Nudix_Hydrolase_10 Mem 99.1 1.9E-10 4.1E-15 86.3 6.4 49 66-116 3-51 (112)
16 cd04677 Nudix_Hydrolase_18 Mem 99.1 2.1E-09 4.6E-14 81.7 11.2 113 61-189 7-122 (132)
17 cd03426 CoAse Coenzyme A pyrop 99.1 5.8E-10 1.3E-14 89.5 8.4 56 61-116 1-63 (157)
18 cd04686 Nudix_Hydrolase_27 Mem 99.1 1.9E-09 4E-14 83.7 11.0 50 63-116 2-52 (131)
19 cd04682 Nudix_Hydrolase_23 Mem 99.1 1.2E-09 2.7E-14 83.0 9.6 106 63-191 2-116 (122)
20 cd04689 Nudix_Hydrolase_30 Mem 99.1 1.8E-09 3.8E-14 82.1 10.2 86 62-167 2-88 (125)
21 cd03430 GDPMH GDP-mannose glyc 99.1 7.7E-10 1.7E-14 87.7 8.3 52 61-115 12-67 (144)
22 cd04678 Nudix_Hydrolase_19 Mem 99.0 1.1E-09 2.4E-14 83.5 8.4 52 61-115 2-57 (129)
23 PLN02325 nudix hydrolase 99.0 1.1E-09 2.3E-14 87.2 8.5 63 60-133 8-74 (144)
24 PLN02709 nudix hydrolase 99.0 1.7E-09 3.7E-14 93.5 10.2 105 56-165 27-150 (222)
25 cd04511 Nudix_Hydrolase_4 Memb 99.0 1E-09 2.3E-14 84.6 8.0 59 64-132 15-77 (130)
26 PRK10546 pyrimidine (deoxy)nuc 99.0 1.1E-09 2.4E-14 83.9 7.9 52 62-116 4-60 (135)
27 cd04664 Nudix_Hydrolase_7 Memb 99.0 3.9E-09 8.5E-14 80.6 10.8 53 64-116 3-58 (129)
28 cd04700 DR1025_like DR1025 fro 99.0 1.5E-09 3.2E-14 85.7 8.5 63 61-133 13-79 (142)
29 cd04680 Nudix_Hydrolase_21 Mem 99.0 4E-09 8.6E-14 78.8 10.4 92 76-188 12-107 (120)
30 cd04695 Nudix_Hydrolase_36 Mem 99.0 9.1E-10 2E-14 85.0 7.1 54 63-116 1-57 (131)
31 cd04690 Nudix_Hydrolase_31 Mem 99.0 2.4E-09 5.2E-14 80.1 8.7 40 77-116 13-53 (118)
32 cd04676 Nudix_Hydrolase_17 Mem 99.0 2.1E-09 4.6E-14 80.2 8.4 52 61-115 2-54 (129)
33 cd04696 Nudix_Hydrolase_37 Mem 99.0 1.5E-09 3.2E-14 82.7 7.4 41 76-116 14-56 (125)
34 cd03672 Dcp2p mRNA decapping e 99.0 1.3E-09 2.8E-14 87.1 7.3 52 64-116 3-55 (145)
35 cd04672 Nudix_Hydrolase_14 Mem 99.0 4.1E-09 8.9E-14 80.2 9.3 64 61-135 2-66 (123)
36 cd04671 Nudix_Hydrolase_13 Mem 99.0 2.9E-09 6.4E-14 82.3 8.3 59 64-131 2-64 (123)
37 COG1051 ADP-ribose pyrophospha 99.0 3.7E-09 8.1E-14 84.9 8.9 86 62-168 10-99 (145)
38 cd03674 Nudix_Hydrolase_1 Memb 98.9 2.7E-09 5.9E-14 83.3 7.6 54 62-116 2-56 (138)
39 cd04691 Nudix_Hydrolase_32 Mem 98.9 4.2E-09 9.2E-14 80.1 8.4 50 63-116 2-57 (117)
40 cd04673 Nudix_Hydrolase_15 Mem 98.9 5.3E-09 1.1E-13 78.1 8.2 40 76-115 11-54 (122)
41 cd04683 Nudix_Hydrolase_24 Mem 98.9 3.1E-09 6.6E-14 79.9 6.9 40 77-116 12-56 (120)
42 TIGR00586 mutt mutator mutT pr 98.9 4.9E-09 1.1E-13 79.1 8.0 52 61-115 4-60 (128)
43 cd03427 MTH1 MutT homolog-1 (M 98.9 2E-08 4.3E-13 77.1 11.1 41 76-116 12-56 (137)
44 cd04681 Nudix_Hydrolase_22 Mem 98.9 6E-09 1.3E-13 79.4 7.7 51 64-116 3-57 (130)
45 cd03671 Ap4A_hydrolase_plant_l 98.9 6.5E-09 1.4E-13 82.0 8.0 51 64-116 5-57 (147)
46 cd04666 Nudix_Hydrolase_9 Memb 98.9 9.3E-09 2E-13 79.7 8.6 52 64-115 2-55 (122)
47 cd03675 Nudix_Hydrolase_2 Cont 98.9 8.2E-09 1.8E-13 79.2 8.1 40 77-116 12-54 (134)
48 PRK10776 nucleoside triphospha 98.9 6.7E-09 1.5E-13 77.9 7.3 53 62-116 4-61 (129)
49 cd04685 Nudix_Hydrolase_26 Mem 98.9 3.4E-08 7.4E-13 77.8 11.3 52 62-116 1-58 (133)
50 cd04674 Nudix_Hydrolase_16 Mem 98.9 1.7E-08 3.6E-13 79.1 9.2 89 77-170 16-115 (118)
51 PRK10707 putative NUDIX hydrol 98.8 2.4E-08 5.2E-13 83.7 10.2 119 60-189 29-170 (190)
52 cd02885 IPP_Isomerase Isopente 98.8 1.8E-08 3.8E-13 81.4 8.8 56 59-116 26-89 (165)
53 PRK05379 bifunctional nicotina 98.8 4.9E-08 1.1E-12 88.1 12.1 52 61-116 203-258 (340)
54 cd04699 Nudix_Hydrolase_39 Mem 98.8 1.9E-08 4.1E-13 75.6 7.9 49 65-115 4-58 (129)
55 cd04665 Nudix_Hydrolase_8 Memb 98.8 2.9E-08 6.3E-13 77.3 8.8 52 77-135 12-63 (118)
56 PRK03759 isopentenyl-diphospha 98.8 5.9E-08 1.3E-12 80.0 10.6 60 55-116 27-93 (184)
57 cd03424 ADPRase_NUDT5 ADP-ribo 98.8 2.7E-08 5.9E-13 76.5 7.9 52 62-116 3-59 (137)
58 cd04694 Nudix_Hydrolase_35 Mem 98.8 3E-08 6.4E-13 79.4 8.3 51 64-116 3-59 (143)
59 cd04693 Nudix_Hydrolase_34 Mem 98.8 1.8E-08 4E-13 76.9 6.5 48 66-116 4-58 (127)
60 cd04663 Nudix_Hydrolase_6 Memb 98.8 3.1E-08 6.8E-13 78.7 7.9 51 66-116 4-54 (126)
61 cd04661 MRP_L46 Mitochondrial 98.8 2.1E-08 4.5E-13 78.2 6.7 42 74-115 11-55 (132)
62 TIGR02705 nudix_YtkD nucleosid 98.8 1.2E-07 2.6E-12 77.9 11.5 90 77-188 36-126 (156)
63 PRK15393 NUDIX hydrolase YfcD; 98.7 9.8E-08 2.1E-12 78.7 9.9 80 19-116 10-96 (180)
64 cd03429 NADH_pyrophosphatase N 98.7 3.6E-08 7.9E-13 76.6 6.9 51 64-116 2-55 (131)
65 cd03425 MutT_pyrophosphohydrol 98.7 6.6E-08 1.4E-12 71.3 7.9 51 64-116 3-58 (124)
66 PRK00714 RNA pyrophosphohydrol 98.7 7.1E-08 1.5E-12 77.7 8.6 55 59-116 6-62 (156)
67 cd04692 Nudix_Hydrolase_33 Mem 98.7 5.2E-08 1.1E-12 76.5 7.1 54 63-116 4-64 (144)
68 cd02883 Nudix_Hydrolase Nudix 98.6 6E-07 1.3E-11 65.1 10.8 41 76-116 12-55 (123)
69 PRK11762 nudE adenosine nucleo 98.6 2.1E-07 4.5E-12 76.8 8.0 50 65-116 50-104 (185)
70 cd04697 Nudix_Hydrolase_38 Mem 98.5 1.7E-07 3.7E-12 72.0 6.2 51 63-116 2-59 (126)
71 cd04662 Nudix_Hydrolase_5 Memb 98.5 3.1E-07 6.7E-12 73.2 7.4 51 66-116 4-63 (126)
72 COG0494 MutT NTP pyrophosphohy 98.5 3.8E-07 8.2E-12 66.7 6.6 52 64-116 13-67 (161)
73 PRK08999 hypothetical protein; 98.5 4.1E-07 8.9E-12 79.8 7.7 41 76-116 17-62 (312)
74 TIGR02150 IPP_isom_1 isopenten 98.4 1E-06 2.3E-11 70.9 7.2 56 57-116 22-84 (158)
75 PRK00241 nudC NADH pyrophospha 98.4 7.5E-07 1.6E-11 78.0 6.3 40 76-115 143-185 (256)
76 KOG2839 Diadenosine and diphos 98.3 1.9E-06 4.1E-11 70.5 7.7 87 54-155 2-90 (145)
77 cd03670 ADPRase_NUDT9 ADP-ribo 98.3 1.5E-06 3.2E-11 73.4 5.7 43 73-115 46-89 (186)
78 cd03676 Nudix_hydrolase_3 Memb 98.2 4.3E-06 9.2E-11 68.3 7.3 60 57-116 27-95 (180)
79 TIGR00052 nudix-type nucleosid 98.2 4.1E-06 8.9E-11 69.8 7.0 52 64-116 46-107 (185)
80 PRK10729 nudF ADP-ribose pyrop 98.0 2.9E-05 6.2E-10 65.8 8.6 53 63-116 50-112 (202)
81 PLN03143 nudix hydrolase; Prov 98.0 1.7E-05 3.6E-10 71.2 6.8 56 61-116 127-189 (291)
82 cd03431 DNA_Glycosylase_C DNA 97.6 0.0002 4.2E-09 52.7 6.8 39 76-114 14-57 (118)
83 KOG3069 Peroxisomal NUDIX hydr 97.4 0.00035 7.5E-09 61.5 6.4 97 61-164 42-157 (246)
84 PLN02791 Nudix hydrolase homol 97.4 0.00055 1.2E-08 68.6 8.2 62 54-116 24-92 (770)
85 PRK15009 GDP-mannose pyrophosp 97.3 0.0012 2.5E-08 55.6 7.8 51 64-116 47-108 (191)
86 KOG3041 Nucleoside diphosphate 96.9 0.0029 6.3E-08 54.8 6.6 56 62-117 74-134 (225)
87 KOG0648 Predicted NUDIX hydrol 96.9 0.0015 3.2E-08 59.1 4.9 41 76-116 127-173 (295)
88 PLN02552 isopentenyl-diphospha 96.8 0.0045 9.7E-08 54.5 7.1 59 56-116 50-132 (247)
89 KOG3084 NADH pyrophosphatase I 96.6 0.0043 9.3E-08 56.8 6.1 51 65-115 189-242 (345)
90 KOG4195 Transient receptor pot 96.6 0.0022 4.8E-08 56.4 3.9 38 76-113 139-177 (275)
91 COG2816 NPY1 NTP pyrophosphohy 96.4 0.0061 1.3E-07 54.8 5.8 54 61-116 142-198 (279)
92 PLN02839 nudix hydrolase 94.5 0.21 4.6E-06 46.7 8.5 96 64-175 206-308 (372)
93 COG4119 Predicted NTP pyrophos 93.2 0.21 4.6E-06 41.0 5.4 32 85-116 35-66 (161)
94 PF14815 NUDIX_4: NUDIX domain 91.2 0.36 7.7E-06 36.2 4.1 38 77-115 10-52 (114)
95 COG1443 Idi Isopentenyldiphosp 70.7 6.1 0.00013 33.8 3.9 54 62-117 33-93 (185)
96 cd08071 MPN_DUF2466 Mov34/MPN/ 53.9 10 0.00022 29.3 2.1 40 59-115 55-96 (113)
97 TIGR00608 radc DNA repair prot 52.0 12 0.00027 32.2 2.6 40 59-115 155-196 (218)
98 PRK00024 hypothetical protein; 49.7 13 0.00029 32.0 2.4 40 59-115 161-202 (224)
99 KOG2937 Decapping enzyme compl 48.7 7.3 0.00016 36.3 0.6 121 54-178 74-203 (348)
100 PF06453 LT-IIB: Type II heat- 43.5 92 0.002 24.8 6.0 52 46-98 24-80 (122)
101 COG4894 Uncharacterized conser 31.0 1.4E+02 0.003 25.1 5.4 29 30-58 44-72 (159)
102 cd08059 MPN_prok_mb Mpr1p, Pad 28.0 49 0.0011 24.2 2.1 29 61-106 53-81 (101)
103 PF06404 PSK: Phytosulfokine p 26.9 49 0.0011 24.5 2.0 18 94-111 51-68 (81)
104 PF04002 RadC: RadC-like JAB d 25.4 37 0.0008 26.4 1.1 39 60-115 61-101 (123)
105 TIGR01084 mutY A/G-specific ad 25.0 1.5E+02 0.0032 26.5 5.0 29 63-93 228-261 (275)
106 KOG4548 Mitochondrial ribosoma 22.1 1.4E+02 0.003 27.0 4.2 40 76-115 139-182 (263)
107 PF07026 DUF1317: Protein of u 20.8 75 0.0016 22.7 1.8 29 86-114 22-50 (60)
No 1
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=100.00 E-value=1.1e-85 Score=551.41 Aligned_cols=176 Identities=56% Similarity=1.044 Sum_probs=149.0
Q ss_pred ceEEEeeCCceeeccccCCCCCChhHHHHHHHHHhhhccCCCeeEEEEEEEEecCCCCeEEEEEecCCeeecCCcccCCC
Q 029260 19 YVVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPG 98 (196)
Q Consensus 19 ~~~~lYPl~nY~Fg~k~~~~ekd~sv~~rl~rl~~~y~~~GmRrsV~aVilvh~~~~phVLLlq~~~~~~~LPGGrl~~g 98 (196)
++|+|||||||+||+||++.|||+|+++||+||+++|+++||||||+||||||+|+||||||||+++++|+||||++++|
T Consensus 1 ~~~~iYPlsnY~Fg~ke~~~ekd~s~~~rl~rl~~~y~~~GmRrsVe~Vllvh~h~~PHvLLLq~~~~~fkLPGg~l~~g 80 (188)
T PF13869_consen 1 QTIRIYPLSNYTFGTKEAQPEKDPSVAARLQRLKENYEKEGMRRSVEGVLLVHEHGHPHVLLLQIGNTFFKLPGGRLRPG 80 (188)
T ss_dssp -EEEE-BGGGEEEEEES----SSSSHHHHHHHHHHHHHHHSSEEEEEEEEEEEETTEEEEEEEEETTTEEE-SEEE--TT
T ss_pred CeEEEecccceeeccCCcccccccCHHHHHHHHHHHHHHhCCceEEEEEEEEecCCCcEEEEEeccCccccCCccEeCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeeccCCCcCCCCCCCCCCCCceeeeEEEEEEcCCceEEeeCCCCeE
Q 029260 99 ESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKL 178 (196)
Q Consensus 99 E~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwRp~Fet~~yPYlP~Hit~pKE~~klylV~Lpe~~~f~vPkn~kL 178 (196)
|+|++||+|+|++.|+..+ +...+|+||||||+|||||||+.|||||||||||||||+|||+|||||+|.|+|||||||
T Consensus 81 E~e~~gLkrkL~~~l~~~~-~~~~~w~vge~l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~F~VPkn~kL 159 (188)
T PF13869_consen 81 EDEIEGLKRKLTEKLSPED-GVDPDWEVGECLGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCLFAVPKNMKL 159 (188)
T ss_dssp --HHHHHHHHHHHHHB-SS-SS----EEEEEEEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEEEEEETTSEE
T ss_pred CChhHHHHHHHHHHcCCCc-CCCCCcEecCEEEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCCceEecCCCCeE
Confidence 9999999999999999964 567899999999999999999999999999999999999999999999999999999999
Q ss_pred EecccceeecCcccccc
Q 029260 179 LAVPLCQIHENHKVQFS 195 (196)
Q Consensus 179 ~AvPLfelydN~~~y~~ 195 (196)
+||||||||||+++||.
T Consensus 160 ~AvPLFeLydN~~~YG~ 176 (188)
T PF13869_consen 160 VAVPLFELYDNAQRYGP 176 (188)
T ss_dssp EEEEHHHHTTTHHHHHH
T ss_pred EeecHhhhhcChhhcCc
Confidence 99999999999999984
No 2
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=100.00 E-value=6.8e-86 Score=547.85 Aligned_cols=183 Identities=55% Similarity=0.971 Sum_probs=176.2
Q ss_pred CCCCCCC----ceEEEeeCCceeeccccCCCCCChhHHHHHHHHHhhhccCCCeeEEEEEEEEecCCCCeEEEEEecCCe
Q 029260 12 NGSDRNG----YVVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLLLQVRNSI 87 (196)
Q Consensus 12 ~~~~~~~----~~~~lYPl~nY~Fg~k~~~~ekd~sv~~rl~rl~~~y~~~GmRrsV~aVilvh~~~~phVLLlq~~~~~ 87 (196)
++..+++ ++|++||||||+|||||++.|||+||++||+||+.+|++.||||+|+||+|||+|++|||||||++++|
T Consensus 16 ~~~~~~~~~~~~~vn~YPLsnYtFGtKe~~~eKD~svadrf~rmk~ey~k~gmRrsvegvlivheH~lPHvLLLQig~tf 95 (221)
T KOG1689|consen 16 NTTRRNDVVHDRTVNLYPLSNYTFGTKEALREKDESVADRFARMKIEYMKEGMRRSVEGVLIVHEHNLPHVLLLQIGNTF 95 (221)
T ss_pred cccccCCcchhheeeeeecccccccccchhhhccchHHHHHHHHHHHHHhhhhhheeeeeEEEeecCCCeEEEEeeCCEE
Confidence 3444455 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeeccCCCcCCCCCCCCCCCCceeeeEEEEEEcCCc
Q 029260 88 FKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVS 167 (196)
Q Consensus 88 ~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwRp~Fet~~yPYlP~Hit~pKE~~klylV~Lpe~ 167 (196)
|+||||+++|||++++||+|.|.|.||. .++...+|.||||||+|||||||+.|||||||||||||||+|||+||||++
T Consensus 96 ~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr-~dg~~~dwtv~ecig~WWRPNFe~~~YPyiP~hitkPKeh~kL~lV~L~~k 174 (221)
T KOG1689|consen 96 FKLPGGRLRPGEDEADGLKRLLTESLGR-SDGLVIDWTVGECIGNWWRPNFETPMYPYIPPHITKPKEHTKLFLVQLPEK 174 (221)
T ss_pred EecCCCccCCCcchhHHHHHHHHHHhcc-cccccccccHhhhhhcccCCCCCCcccCCCCcccCCchhccEEEEEEcccc
Confidence 9999999999999999999999999995 578889999999999999999999999999999999999999999999999
Q ss_pred eEEeeCCCCeEEecccceeecCcccccc
Q 029260 168 QKFFVPKNLKLLAVPLCQIHENHKVQFS 195 (196)
Q Consensus 168 ~~f~vPkn~kL~AvPLfelydN~~~y~~ 195 (196)
..|+||||+||+||||||||||++.||.
T Consensus 175 ~~F~VPKN~KLlA~PLfeLydN~~~yGP 202 (221)
T KOG1689|consen 175 QQFAVPKNFKLLAVPLFELYDNAKTYGP 202 (221)
T ss_pred ceEeccCCceeeeeeHhhhhhccccccc
Confidence 9999999999999999999999999975
No 3
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.28 E-value=2.1e-11 Score=92.68 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=53.0
Q ss_pred CeeEEEEEEEEecCCCCeEEEEEecCCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 60 LRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 60 mRrsV~aVilvh~~~~phVLLlq~~~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+++++.+|++..+.+...|||+|+..+.|.||||.+++||+..+|+.||+.||+|+.
T Consensus 1 ~~~~~g~vi~~~~~~~~~vLl~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~ 57 (130)
T cd03428 1 EERSAGAIIYRRLNNEIEYLLLQASYGHWDFPKGHVEPGEDDLEAALRETEEETGIT 57 (130)
T ss_pred CceEEEEEEEEecCCCceEEEEEccCCcCcCCcCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 578999999998888889999999879999999999999999999999999999994
No 4
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.21 E-value=2e-10 Score=87.49 Aligned_cols=87 Identities=26% Similarity=0.384 Sum_probs=64.3
Q ss_pred eEEEEEEEEecCCCCeEEEEEecC-CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeeccCCCc
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFET 140 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~~-~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwRp~Fet 140 (196)
++|.||++- ++ +|||.|+.. +.|.||||.+++||+..+|+.||+.||+|+ ...+...++.+.. +
T Consensus 2 ~~v~~vi~~--~~--~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl-------~~~~~~~~~~~~~--~-- 66 (126)
T cd04688 2 VRAAAIIIH--NG--KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGL-------KIEITRLLGVVEN--I-- 66 (126)
T ss_pred eEEEEEEEE--CC--EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCC-------ceecceeeEEEEE--e--
Confidence 467788773 22 999998875 799999999999999999999999999998 4566667776542 1
Q ss_pred CCCCCCCCCCCCceeeeEEEEEEcCCce
Q 029260 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQ 168 (196)
Q Consensus 141 ~~yPYlP~Hit~pKE~~klylV~Lpe~~ 168 (196)
|++-. ..-.++..+|++.++...
T Consensus 67 --~~~~~---~~~~~~~~~f~~~~~~~~ 89 (126)
T cd04688 67 --FTYNG---KPGHEIEFYYLVTLLDES 89 (126)
T ss_pred --eccCC---cccEEEEEEEEEEeCCCc
Confidence 11111 112456789999987665
No 5
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.20 E-value=2.3e-10 Score=86.25 Aligned_cols=65 Identities=25% Similarity=0.346 Sum_probs=53.8
Q ss_pred eeEEEEEEEEecCCCCeEEEEEecC-CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeee
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~~-~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~ 132 (196)
|.+|.|||+....+..+|||+++.. +.|.||||.+++||+..+++.|||.||+|+ ...+...++.
T Consensus 1 ~~~a~~ii~~~~~~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl-------~~~~~~~~~~ 66 (131)
T cd03673 1 VLAAGGVVFRGSDGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGI-------RAEVGDPLGT 66 (131)
T ss_pred CeeEEEEEEEccCCCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCC-------ceEecceEEE
Confidence 4677888887766678999999865 599999999999999999999999999999 3344445554
No 6
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.19 E-value=2.4e-10 Score=85.87 Aligned_cols=107 Identities=23% Similarity=0.267 Sum_probs=68.3
Q ss_pred EEEEEEEEecCCCCeEEEEEecC----CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeeccCC
Q 029260 63 CVEAVLLVELFKHPHLLLLQVRN----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDF 138 (196)
Q Consensus 63 sV~aVilvh~~~~phVLLlq~~~----~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwRp~F 138 (196)
+|.|||+ ++ .+|||+|+.+ +.|.||||++++||+..+|++||+.||+|+ ...+...++.+.....
T Consensus 2 ~~~~ii~-~~---~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl-------~~~~~~~~~~~~~~~~ 70 (128)
T cd04684 2 GAYAVIP-RD---GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGL-------TVEIGRRLGSASRYFY 70 (128)
T ss_pred eeEEEEE-eC---CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCc-------EeecceeeeEEEEEEE
Confidence 4566554 32 5999999975 899999999999999999999999999998 3444556665332111
Q ss_pred CcCCCCCCCCCCCCceeeeEEEEEEcCCceEE-eeC--CCCeEEecccceee
Q 029260 139 ETLLFPYFPPNVKRPKECTKLFLVKLPVSQKF-FVP--KNLKLLAVPLCQIH 187 (196)
Q Consensus 139 et~~yPYlP~Hit~pKE~~klylV~Lpe~~~f-~vP--kn~kL~AvPLfely 187 (196)
. |...+.-..+.-+|.+++.....- ..+ ......-+|+=+|-
T Consensus 71 ~-------~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~ 115 (128)
T cd04684 71 S-------PDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAI 115 (128)
T ss_pred C-------CCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhh
Confidence 1 101112245667888887665420 112 22445555655543
No 7
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.17 E-value=2.8e-10 Score=89.34 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=42.8
Q ss_pred eeEEEEEEEEecCCCCeEEEEEec--CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVR--NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~--~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+-+|.+|++-+ .+ +|||+|+. .+.|.||||.+++||+..+|++|||.||+|+.
T Consensus 7 ~~~v~~vi~~~-~~--~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~ 61 (148)
T PRK09438 7 PVSVLVVIYTP-DL--GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGID 61 (148)
T ss_pred ceEEEEEEEeC-CC--eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcC
Confidence 44555555433 22 69999875 37899999999999999999999999999994
No 8
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.15 E-value=5.9e-10 Score=84.73 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=44.6
Q ss_pred eeEEEEEEEEecCCCCeEEEEEec----CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
|.+|.++|+- .+ ..|||+++. .+.|.||||++++||+..+|++||+.||+|+.
T Consensus 2 ~~~~~~~i~~-~~--~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~ 58 (125)
T cd04679 2 RVGCGAAILR-DD--GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLS 58 (125)
T ss_pred ceEEEEEEEC-CC--CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCC
Confidence 5677777763 22 389999875 37999999999999999999999999999993
No 9
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.14 E-value=1.9e-10 Score=94.02 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=49.7
Q ss_pred CeeEEEEEEEEecCCCCeEEEEEecC----CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeee
Q 029260 60 LRTCVEAVLLVELFKHPHLLLLQVRN----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (196)
Q Consensus 60 mRrsV~aVilvh~~~~phVLLlq~~~----~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~ 132 (196)
...+|.+||+ + +..+|||+|+.+ |+|.||||++++||+..+|++||+.||+|+.- ...++.+++.
T Consensus 16 ~~~~v~~vI~-~--~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v-----~~~~~~~~~~ 84 (159)
T PRK15434 16 PLISLDFIVE-N--SRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL-----PITAGQFYGV 84 (159)
T ss_pred ceEEEEEEEE-C--CCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCcc-----ccccceEEEE
Confidence 3456666654 2 235999999864 79999999999999999999999999999931 1234566665
No 10
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.14 E-value=4.8e-10 Score=84.00 Aligned_cols=92 Identities=27% Similarity=0.434 Sum_probs=65.6
Q ss_pred eEEEEEEEEecCCCCeEEEEEecC------CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeee--e
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVRN------SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM--W 133 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~~------~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~--W 133 (196)
|.++++++.+..+ +|||+|+.+ +.|.||||++++||+..+|++|||.||+|. .......++. |
T Consensus 2 ~~~v~~ii~~~~~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~-------~~~~~~~~~~~~~ 72 (134)
T PF00293_consen 2 RRAVGVIIFNEDG--KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGL-------DVSPLELLGLFSY 72 (134)
T ss_dssp EEEEEEEEEETTT--EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSE-------EEEEEEEEEEEEE
T ss_pred CCEEEEEEEeCCc--EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccc-------eecccccceeeee
Confidence 4555556566555 999999974 579999999999999999999999999998 3344444443 3
Q ss_pred eccCCCcCCCCCCCCCCCCceeeeEEEEEEcCCceEEeeCC
Q 029260 134 WKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPK 174 (196)
Q Consensus 134 wRp~Fet~~yPYlP~Hit~pKE~~klylV~Lpe~~~f~vPk 174 (196)
..+.-.+ ..+....|.+.++......++.
T Consensus 73 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 101 (134)
T PF00293_consen 73 PSPSGDP------------EGEIVIFFIAELPSEQSEIQPQ 101 (134)
T ss_dssp EETTTES------------SEEEEEEEEEEEEEEESECHTT
T ss_pred cccCCCc------------ccEEEEEEEEEEeCCccccCCC
Confidence 2222211 4566788888888777555543
No 11
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.12 E-value=2.7e-10 Score=88.79 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=42.7
Q ss_pred eEEEEEEEEecCCCCeEEEEEecC------CeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVRN------SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~~------~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
|+|.+.++.++ .+|||+|+.. |.|.||||++++||+..+|+.|||.||+|+
T Consensus 4 r~~~~~ii~~~---~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl 60 (141)
T PRK15472 4 RTIVCPLIQND---GAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGE 60 (141)
T ss_pred eeEEEEEEecC---CEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCC
Confidence 45555555443 4899999853 789999999999999999999999999998
No 12
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.11 E-value=2.8e-10 Score=87.04 Aligned_cols=49 Identities=29% Similarity=0.476 Sum_probs=41.9
Q ss_pred eEEEEEecC---CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeee
Q 029260 77 HLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (196)
Q Consensus 77 hVLLlq~~~---~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~ 132 (196)
+|||+|+.. +.|.||||++++||+..+|++|||.||+|+ ..+++..++.
T Consensus 13 ~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl-------~~~~~~~~~~ 64 (121)
T cd04669 13 EILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGL-------DVRVEEIFLI 64 (121)
T ss_pred EEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCe-------eEeeeeEEEE
Confidence 899999853 689999999999999999999999999999 3455555544
No 13
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.11 E-value=1.2e-09 Score=83.56 Aligned_cols=52 Identities=25% Similarity=0.494 Sum_probs=43.8
Q ss_pred eeEEEEEEEEecCCCCeEEEEEec---CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVR---NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~---~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
|.+|.||++ ++ -+|||.|+. .+.|.||||++++||+..+|++||+.||+|+.
T Consensus 1 r~~a~~iv~-~~---~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~ 55 (128)
T cd04687 1 RNSAKAVII-KN---DKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGID 55 (128)
T ss_pred CcEEEEEEE-EC---CEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCc
Confidence 556777776 33 389999984 35799999999999999999999999999993
No 14
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.10 E-value=4.8e-10 Score=85.45 Aligned_cols=61 Identities=33% Similarity=0.501 Sum_probs=48.2
Q ss_pred eEEEEEEEEecCCCCeEEEEEecC---CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeee
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~~---~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~ 132 (196)
-+|.|+++.++ .+|||+|+.. +.|.||||++++||+..+|+.||+.||+|+ ..++...++.
T Consensus 3 ~~~~~~v~~~~---~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl-------~~~~~~~~~~ 66 (127)
T cd04670 3 VGVGGLVLNEK---NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGI-------DTEFVSVVGF 66 (127)
T ss_pred eEEEEEEEcCC---CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCC-------CcceeEEEEE
Confidence 35566665332 4899998875 899999999999999999999999999999 3445555554
No 15
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.10 E-value=1.9e-10 Score=86.28 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=42.2
Q ss_pred EEEEEecCCCCeEEEEEecCCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 66 AVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 66 aVilvh~~~~phVLLlq~~~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
|.+|+..+ -+|||+|+..+.|.+|||.+++||+..+|+.||+.||+|+.
T Consensus 3 a~~i~~~~--~~vLlv~r~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~ 51 (112)
T cd04667 3 ATVICRRG--GRVLLVRKSGSRWALPGGKIEPGETPLQAARRELQEETGLQ 51 (112)
T ss_pred eEEEEecC--CEEEEEEcCCCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCc
Confidence 34444433 38999999889999999999999999999999999999984
No 16
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.07 E-value=2.1e-09 Score=81.70 Aligned_cols=113 Identities=23% Similarity=0.277 Sum_probs=68.4
Q ss_pred eeEEEEEEEEecCCCCeEEEEEecC-CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeeccCCC
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFE 139 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~~-~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwRp~Fe 139 (196)
+.+|.+++ ++.. -.|||.++.. +.|.||||.+++||+..+|+.||+.||+|+ .......++.+..+.+
T Consensus 7 ~~~~~~~v-~~~~--~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi-------~~~~~~~~~~~~~~~~- 75 (132)
T cd04677 7 LVGAGVIL-LNEQ--GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGL-------EVEELELLGVYSGKEF- 75 (132)
T ss_pred ccceEEEE-EeCC--CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCC-------eeeeeEEEEEecCCce-
Confidence 33444444 4332 3888888764 589999999999999999999999999998 3445555655432222
Q ss_pred cCCCCCCCCCCCCceeeeEEEEEEcCCceEEeeCC--CCeEEecccceeecC
Q 029260 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPK--NLKLLAVPLCQIHEN 189 (196)
Q Consensus 140 t~~yPYlP~Hit~pKE~~klylV~Lpe~~~f~vPk--n~kL~AvPLfelydN 189 (196)
|+. |. -.......-+|.+..........+. ...+.-+|+-|+-.+
T Consensus 76 ---~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 122 (132)
T cd04677 76 ---YVK-PN-GDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPEL 122 (132)
T ss_pred ---eec-CC-CCcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccc
Confidence 111 11 1234455566666665444333332 234555666555443
No 17
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.07 E-value=5.8e-10 Score=89.47 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=50.1
Q ss_pred eeEEEEEEEEecCCCCeEEEEEecC------CeeecCCcccCCC-CChHHHHHHHHHHHhCCC
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVRN------SIFKLPGGRLRPG-ESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~~------~~~~LPGGrl~~g-E~~~e~LkReL~EeLg~~ 116 (196)
|++++.|++....+.++|||.|+.. |.|.||||++++| |+..+|++||+.||+|+.
T Consensus 1 ~~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~ 63 (157)
T cd03426 1 RRAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLP 63 (157)
T ss_pred CceEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCC
Confidence 5678888888777778999999863 7899999999999 999999999999999994
No 18
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.07 E-value=1.9e-09 Score=83.72 Aligned_cols=50 Identities=32% Similarity=0.579 Sum_probs=42.9
Q ss_pred EEEEEEEEecCCCCeEEEEEecC-CeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 63 CVEAVLLVELFKHPHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 63 sV~aVilvh~~~~phVLLlq~~~-~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+|.||| +++ -+|||+|+.+ +.|.||||++++||+..+|++||+.||+|+.
T Consensus 2 ~~~~ii-~~~---~~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~ 52 (131)
T cd04686 2 AVRAII-LQG---DKILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGAT 52 (131)
T ss_pred cEEEEE-EEC---CEEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCc
Confidence 455665 444 3899999876 8999999999999999999999999999983
No 19
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.07 E-value=1.2e-09 Score=82.97 Aligned_cols=106 Identities=21% Similarity=0.318 Sum_probs=68.0
Q ss_pred EEEEEEEEecCCCCeEEEEEecC-------CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeec
Q 029260 63 CVEAVLLVELFKHPHLLLLQVRN-------SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWK 135 (196)
Q Consensus 63 sV~aVilvh~~~~phVLLlq~~~-------~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwR 135 (196)
.|.++++.++ .+|||+++.. |.|.||||++++||+..+|+.||+.||+|+.- +..... | .
T Consensus 2 ~v~~~~~~~~---g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~-------~~~~~~--~-~ 68 (122)
T cd04682 2 GVALALLIGD---GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTL-------PESRIP--W-F 68 (122)
T ss_pred ceEEEEEEcC---CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcc-------cccccc--e-e
Confidence 4666666544 4999999863 69999999999999999999999999999932 111111 1 1
Q ss_pred cCCCcCCCCCCCCCCCCceeeeEEEEEEcCCceEEee-CC-CCeEEecccceeecCcc
Q 029260 136 PDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFV-PK-NLKLLAVPLCQIHENHK 191 (196)
Q Consensus 136 p~Fet~~yPYlP~Hit~pKE~~klylV~Lpe~~~f~v-Pk-n~kL~AvPLfelydN~~ 191 (196)
.. |++- ...++..+|.+.+........ +. -....-+|+=||.++..
T Consensus 69 ~~-----~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 116 (122)
T cd04682 69 RV-----YPSA-----SPPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAHED 116 (122)
T ss_pred Ee-----cccC-----CCCceEEEEEEEEecCCCccccCchhheeecccHHHHhhccc
Confidence 01 1111 234677899998876541222 21 12355566666655543
No 20
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.06 E-value=1.8e-09 Score=82.11 Aligned_cols=86 Identities=27% Similarity=0.387 Sum_probs=59.4
Q ss_pred eEEEEEEEEecCCCCeEEEEEecC-CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeeccCCCc
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFET 140 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~~-~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwRp~Fet 140 (196)
.+|.||++ ++ .+|||+++.. +.|.||||.+++||+..+|+.||+.||+|+. ..+...++.- +
T Consensus 2 ~~~~~vi~-~~---~~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~-------~~~~~~l~~~-----~- 64 (125)
T cd04689 2 LRARAIVR-AG---NKVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVA-------VSDGRFLGAI-----E- 64 (125)
T ss_pred eEEEEEEE-eC---CEEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCce-------eeccEEEEEE-----e-
Confidence 35667765 32 3899998864 7999999999999999999999999999983 2333344321 1
Q ss_pred CCCCCCCCCCCCceeeeEEEEEEcCCc
Q 029260 141 LLFPYFPPNVKRPKECTKLFLVKLPVS 167 (196)
Q Consensus 141 ~~yPYlP~Hit~pKE~~klylV~Lpe~ 167 (196)
+.| +.|-....++..+|++.++..
T Consensus 65 --~~~-~~~~~~~~~~~~~f~~~~~~~ 88 (125)
T cd04689 65 --NQW-HEKGVRTHEINHIFAVESSWL 88 (125)
T ss_pred --eee-ccCCceEEEEEEEEEEEcccc
Confidence 111 122224456778888888654
No 21
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.05 E-value=7.7e-10 Score=87.72 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=43.3
Q ss_pred eeEEEEEEEEecCCCCeEEEEEec----CCeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
+.+|.+||+ +. ..+|||.|+. .|.|.||||++++||+..+|+.||+.||+|+
T Consensus 12 ~v~v~~vI~-~~--~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl 67 (144)
T cd03430 12 LVSIDLIVE-NE--DGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGL 67 (144)
T ss_pred eEEEEEEEE-eC--CCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCC
Confidence 455555554 22 2499999985 4789999999999999999999999999998
No 22
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.04 E-value=1.1e-09 Score=83.49 Aligned_cols=52 Identities=29% Similarity=0.334 Sum_probs=43.3
Q ss_pred eeEEEEEEEEecCCCCeEEEEEec----CCeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
|.+|.++|+ +.+ -+|||.|+. .+.|.+|||++++||+..+|++||+.||+|+
T Consensus 2 ~~~v~~ii~-~~~--~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl 57 (129)
T cd04678 2 RVGVGVFVL-NPK--GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGL 57 (129)
T ss_pred ceEEEEEEE-CCC--CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCC
Confidence 445555554 333 389999986 5899999999999999999999999999999
No 23
>PLN02325 nudix hydrolase
Probab=99.04 E-value=1.1e-09 Score=87.18 Aligned_cols=63 Identities=35% Similarity=0.345 Sum_probs=49.7
Q ss_pred CeeEEEEEEEEecCCCCeEEEEEecC----CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeee
Q 029260 60 LRTCVEAVLLVELFKHPHLLLLQVRN----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMW 133 (196)
Q Consensus 60 mRrsV~aVilvh~~~~phVLLlq~~~----~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~W 133 (196)
.|.+|.+||+ + + .+|||.|+.+ +.|.||||.+++||+..++++||+.||.|+ +..+.+.++..
T Consensus 8 p~~~v~~vi~-~-~--~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl-------~v~~~~~l~~~ 74 (144)
T PLN02325 8 PRVAVVVFLL-K-G--NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGL-------EIEKIELLTVT 74 (144)
T ss_pred CeEEEEEEEE-c-C--CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCC-------CCcceEEEEEe
Confidence 4555555554 3 3 3899999864 799999999999999999999999999999 45566666653
No 24
>PLN02709 nudix hydrolase
Probab=99.03 E-value=1.7e-09 Score=93.50 Aligned_cols=105 Identities=17% Similarity=0.217 Sum_probs=72.4
Q ss_pred ccCCCeeEEEEEEEEec----CCCCeEEEEEecC------CeeecCCcccCCCC-ChHHHHHHHHHHHhCCCCCCCccce
Q 029260 56 DAHGLRTCVEAVLLVEL----FKHPHLLLLQVRN------SIFKLPGGRLRPGE-SDIYGLKRKLTRKLSLNEDGGEVDW 124 (196)
Q Consensus 56 ~~~GmRrsV~aVilvh~----~~~phVLLlq~~~------~~~~LPGGrl~~gE-~~~e~LkReL~EeLg~~~~~~~~~w 124 (196)
.....|++++.|+|+.. .+.++|||.+|.. |+|.||||++++|| +.++++.||+.||+|+..+ ..
T Consensus 27 ~~~~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~----~v 102 (222)
T PLN02709 27 QHFPAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPS----LV 102 (222)
T ss_pred CCCCCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCch----he
Confidence 33456889999988864 3578999999973 89999999999986 5699999999999999532 23
Q ss_pred EEeeeeeeeeccCCCcCCCCCC---CC----C-CCCceeeeEEEEEEcC
Q 029260 125 EVGECLGMWWKPDFETLLFPYF---PP----N-VKRPKECTKLFLVKLP 165 (196)
Q Consensus 125 ~Vge~lg~WwRp~Fet~~yPYl---P~----H-it~pKE~~klylV~Lp 165 (196)
+|--.+...+. ......+||+ +. . +-.|.|...+|.|-|.
T Consensus 103 ~vlg~L~~~~t-~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~ 150 (222)
T PLN02709 103 TIISVLEPFVN-KKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLE 150 (222)
T ss_pred EEeeecCCeEC-CCCCEEEEEEEEecCCCCccccCChhhhheeEEecHH
Confidence 33222222222 1222345544 21 1 1368899999998874
No 25
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.03 E-value=1e-09 Score=84.55 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=46.0
Q ss_pred EEEEEEEecCCCCeEEEEEec----CCeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeee
Q 029260 64 VEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~~----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~ 132 (196)
+.++|+.++ .+|||+++. .+.|.||||.+++||+.+++++||+.||+|+ +..+...++.
T Consensus 15 ~v~~ii~~~---~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl-------~~~~~~~~~~ 77 (130)
T cd04511 15 IVGCVPEWE---GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGA-------RVEIDGLYAV 77 (130)
T ss_pred EEEEEEecC---CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCC-------EEEeeeEEEE
Confidence 334444443 489999973 4799999999999999999999999999998 3455555553
No 26
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.02 E-value=1.1e-09 Score=83.92 Aligned_cols=52 Identities=29% Similarity=0.483 Sum_probs=42.2
Q ss_pred eEEEEEEEEecCCCCeEEEEEecC-----CeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVRN-----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~~-----~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
..+.++|+.++ -+|||.|+.+ |.|.||||++++||++.+|++||+.||+|+.
T Consensus 4 ~~~~~~ii~~~---~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~ 60 (135)
T PRK10546 4 IDVVAAIIERD---GKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIE 60 (135)
T ss_pred EEEEEEEEecC---CEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCc
Confidence 34445554433 3899999853 7899999999999999999999999999983
No 27
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.02 E-value=3.9e-09 Score=80.60 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=45.6
Q ss_pred EEEEEEEecCCCCeEEEEEecC---CeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 64 VEAVLLVELFKHPHLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~~~---~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+.+|++.|..+...|||+|+.+ +.|.+|||++++||+..+|+.||+.||+|+.
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~ 58 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLD 58 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCC
Confidence 3566666664567999999864 7999999999999999999999999999993
No 28
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.02 E-value=1.5e-09 Score=85.68 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=48.1
Q ss_pred eeEEEEEEEEecCCCCeEEEEEecC----CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeee
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVRN----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMW 133 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~~----~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~W 133 (196)
.++|.+|++ +.. ..|||+|+.. +.|.||||.+++||+.++|++||+.||.|+ +..+...++.+
T Consensus 13 ~~av~~vv~-~~~--~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl-------~~~~~~~~~~~ 79 (142)
T cd04700 13 ARAAGAVIL-NER--NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGL-------RVRPVKFLGTY 79 (142)
T ss_pred eeeEEEEEE-eCC--CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCc-------eeeccEEEEEE
Confidence 345555554 332 3799988753 789999999999999999999999999999 34455566654
No 29
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.01 E-value=4e-09 Score=78.77 Aligned_cols=92 Identities=22% Similarity=0.327 Sum_probs=60.0
Q ss_pred CeEEEEEecC-CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceE-EeeeeeeeeccCCCcCCCCCCCCCCCCc
Q 029260 76 PHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWE-VGECLGMWWKPDFETLLFPYFPPNVKRP 153 (196)
Q Consensus 76 phVLLlq~~~-~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~-Vge~lg~WwRp~Fet~~yPYlP~Hit~p 153 (196)
..|||+|+.. +.|.||||++++||+..+|++||+.||+|+. .. +...++.+..... ..
T Consensus 12 ~~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~-------~~~~~~~~~~~~~~~~-------------~~ 71 (120)
T cd04680 12 GRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIR-------LAVVAELLGVYYHSAS-------------GS 71 (120)
T ss_pred CeEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCc-------cccccceEEEEecCCC-------------CC
Confidence 3899999874 5899999999999999999999999999993 23 4456666543221 11
Q ss_pred eeeeEEEEEEcCCceEEeeCCC--CeEEecccceeec
Q 029260 154 KECTKLFLVKLPVSQKFFVPKN--LKLLAVPLCQIHE 188 (196)
Q Consensus 154 KE~~klylV~Lpe~~~f~vPkn--~kL~AvPLfelyd 188 (196)
.....+|.+..-.... ..+.+ ....-+|+=+|-+
T Consensus 72 ~~~~~~f~~~~~~~~~-~~~~~E~~~~~w~~~~~l~~ 107 (120)
T cd04680 72 WDHVIVFRARADTQPV-IRPSHEISEARFFPPDALPE 107 (120)
T ss_pred ceEEEEEEecccCCCc-cCCcccEEEEEEECHHHCcc
Confidence 2345677777654432 11211 2344455555544
No 30
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.01 E-value=9.1e-10 Score=85.01 Aligned_cols=54 Identities=26% Similarity=0.349 Sum_probs=48.0
Q ss_pred EEEEEEEEecCCCCeEEEEEec---CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 63 CVEAVLLVELFKHPHLLLLQVR---NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 63 sV~aVilvh~~~~phVLLlq~~---~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+|-||++....+..+|||+++. .|.|.+|||++++||+..+|+.||+.||+|+.
T Consensus 1 ~~~~v~~~~~~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~ 57 (131)
T cd04695 1 AVSGVLLRSLDKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGIS 57 (131)
T ss_pred CceEEEEEEcCCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCC
Confidence 3667888776777899999987 48999999999999999999999999999994
No 31
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.00 E-value=2.4e-09 Score=80.08 Aligned_cols=40 Identities=38% Similarity=0.790 Sum_probs=37.2
Q ss_pred eEEEEEec-CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 77 HLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 77 hVLLlq~~-~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+|||+|+. .+.|.||||++++||+..+|+.||+.||+|+.
T Consensus 13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~ 53 (118)
T cd04690 13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLD 53 (118)
T ss_pred eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCc
Confidence 89998876 48899999999999999999999999999983
No 32
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.00 E-value=2.1e-09 Score=80.24 Aligned_cols=52 Identities=31% Similarity=0.511 Sum_probs=44.0
Q ss_pred eeEEEEEEEEecCCCCeEEEEEec-CCeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~-~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
|.+|.+|++ + +..+|||.|+. ++.|.||||++++||+..+|++||+.||+|+
T Consensus 2 ~~~v~~ii~-~--~~~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl 54 (129)
T cd04676 2 LPGVTAVVR-D--DEGRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGL 54 (129)
T ss_pred cceEEEEEE-C--CCCeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCc
Confidence 556777765 2 22489999986 4899999999999999999999999999999
No 33
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.99 E-value=1.5e-09 Score=82.67 Aligned_cols=41 Identities=27% Similarity=0.526 Sum_probs=37.5
Q ss_pred CeEEEEEec--CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 76 PHLLLLQVR--NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 76 phVLLlq~~--~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
-+|||+|+. .+.|.||||++++||+..+|+.||+.||+|+.
T Consensus 14 ~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~ 56 (125)
T cd04696 14 GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLK 56 (125)
T ss_pred CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCc
Confidence 389999875 48999999999999999999999999999983
No 34
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=98.99 E-value=1.3e-09 Score=87.06 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=43.9
Q ss_pred EEEEEEEecCCCCeEEEEEec-CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 64 VEAVLLVELFKHPHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~~-~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
|+|++++++++ .+|||+|+. .+.|.||||++++||+..+|++|||.||.|+.
T Consensus 3 ~~gaii~~~~~-~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~ 55 (145)
T cd03672 3 VYGAIILNEDL-DKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFD 55 (145)
T ss_pred eeEEEEEeCCC-CEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCcc
Confidence 56677666532 389999974 46999999999999999999999999999983
No 35
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.98 E-value=4.1e-09 Score=80.21 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=51.8
Q ss_pred eeEEEEEEEEecCCCCeEEEEEec-CCeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeec
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWK 135 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~-~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwR 135 (196)
+.+|.|+|+ ++ ..|||+|+. .+.|.||||++++||+..+|++||+.||+|+ ...+..+++...+
T Consensus 2 ~~~v~~~i~-~~---~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~-------~~~~~~~~~~~~~ 66 (123)
T cd04672 2 KVDVRAAIF-KD---GKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGL-------DVKVRKLAAVDDR 66 (123)
T ss_pred cceEEEEEE-EC---CEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCC-------eeeEeEEEEEecc
Confidence 346666665 33 489999886 6899999999999999999999999999999 3466677776554
No 36
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.97 E-value=2.9e-09 Score=82.34 Aligned_cols=59 Identities=29% Similarity=0.447 Sum_probs=46.9
Q ss_pred EEEEEEEecCCCCeEEEEEec----CCeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeee
Q 029260 64 VEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLG 131 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~~----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg 131 (196)
|+++++++.+ -+|||+|+. .+.|.||||++++||+..+|++||+.||+|+ +..+.+.++
T Consensus 2 ~~~~vv~~~~--~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~-------~~~~~~~~~ 64 (123)
T cd04671 2 IVAAVILNNQ--GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGL-------DCEPTTLLS 64 (123)
T ss_pred EEEEEEEcCC--CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCC-------eeecceEEE
Confidence 5566665533 489999874 3789999999999999999999999999999 344555554
No 37
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=98.96 E-value=3.7e-09 Score=84.85 Aligned_cols=86 Identities=26% Similarity=0.349 Sum_probs=62.6
Q ss_pred eEEEEEEEEecCCCCeEEEEEecC----CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeeccC
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVRN----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPD 137 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~~----~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwRp~ 137 (196)
..+++++++... +|||+++.+ |.|.||||.++.||+..+++.|||.||.|+ +..+.+.++..=.++
T Consensus 10 ~~~v~~~i~~~~---~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL-------~~~~~~~~~v~~~~~ 79 (145)
T COG1051 10 LVAVGALIVRNG---RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGL-------RVRVLELLAVFDDPG 79 (145)
T ss_pred ceeeeEEEEeCC---EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCC-------cccceeEEEEecCCC
Confidence 344555555544 999999985 789999999999999999999999999999 456667777665555
Q ss_pred CCcCCCCCCCCCCCCceeeeEEEEEEcCCce
Q 029260 138 FETLLFPYFPPNVKRPKECTKLFLVKLPVSQ 168 (196)
Q Consensus 138 Fet~~yPYlP~Hit~pKE~~klylV~Lpe~~ 168 (196)
+++ |..=...+|++..+...
T Consensus 80 rd~-----------r~~~v~~~~~~~~~~g~ 99 (145)
T COG1051 80 RDP-----------RGHHVSFLFFAAEPEGE 99 (145)
T ss_pred CCC-----------ceeEEEEEEEEEecCCC
Confidence 551 12223466666665443
No 38
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=98.95 E-value=2.7e-09 Score=83.33 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=43.6
Q ss_pred eEEEEEEEEecCCCCeEEEEEec-CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~-~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+...++++++++ ..+|||+|+. .+.|.||||.+++||+..+|+.|||.||.|+.
T Consensus 2 ~~~~~~~v~~~~-~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~ 56 (138)
T cd03674 2 HFTASAFVVNPD-RGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIE 56 (138)
T ss_pred cEEEEEEEEeCC-CCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCC
Confidence 334444444432 2599999976 58999999999999999999999999999993
No 39
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.95 E-value=4.2e-09 Score=80.11 Aligned_cols=50 Identities=28% Similarity=0.452 Sum_probs=41.9
Q ss_pred EEEEEEEEecCCCCeEEEEEec------CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 63 CVEAVLLVELFKHPHLLLLQVR------NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 63 sV~aVilvh~~~~phVLLlq~~------~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
.|.|||+ ++ .+|||.|+. .+.|.||||++++||+..+|+.||+.||+|+.
T Consensus 2 ~v~~vi~-~~---~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~ 57 (117)
T cd04691 2 GVVGVLF-SD---DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVD 57 (117)
T ss_pred eEEEEEE-EC---CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCC
Confidence 3555554 33 589999984 36899999999999999999999999999994
No 40
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.93 E-value=5.3e-09 Score=78.12 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=37.1
Q ss_pred CeEEEEEec----CCeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 76 PHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 76 phVLLlq~~----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
..|||+|+. .+.|.||||.+++||+..+|++||+.||+|+
T Consensus 11 ~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl 54 (122)
T cd04673 11 GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGL 54 (122)
T ss_pred CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCc
Confidence 489999986 3789999999999999999999999999999
No 41
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.92 E-value=3.1e-09 Score=79.91 Aligned_cols=40 Identities=25% Similarity=0.475 Sum_probs=36.9
Q ss_pred eEEEEEecC-----CeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 77 HLLLLQVRN-----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 77 hVLLlq~~~-----~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+|||.|+.+ +.|.||||++++||+..+|++||+.||+|+.
T Consensus 12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~ 56 (120)
T cd04683 12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVT 56 (120)
T ss_pred EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCc
Confidence 899999753 6899999999999999999999999999993
No 42
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=4.9e-09 Score=79.08 Aligned_cols=52 Identities=13% Similarity=0.352 Sum_probs=41.2
Q ss_pred eeEEEEEEEEecCCCCeEEEEEec-----CCeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVR-----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~-----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
++.+.+|| +++. ..|||.|+. .|.|.||||++++||+..+++.||+.||+|+
T Consensus 4 ~~~~~~ii-~~~~--~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~ 60 (128)
T TIGR00586 4 QQIAVGII-RNEN--GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGI 60 (128)
T ss_pred EEEEEEEE-ECCC--CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCC
Confidence 34444444 3332 278888885 3799999999999999999999999999998
No 43
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=98.91 E-value=2e-08 Score=77.14 Aligned_cols=41 Identities=29% Similarity=0.458 Sum_probs=37.7
Q ss_pred CeEEEEEec----CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 76 PHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 76 phVLLlq~~----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
.+|||+|+. .+.|.||||.+++||+..+|++||+.||+|+.
T Consensus 12 ~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~ 56 (137)
T cd03427 12 DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLT 56 (137)
T ss_pred CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeE
Confidence 389999986 37899999999999999999999999999983
No 44
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.90 E-value=6e-09 Score=79.36 Aligned_cols=51 Identities=29% Similarity=0.462 Sum_probs=42.6
Q ss_pred EEEEEEEecCCCCeEEEEEec----CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 64 VEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~~----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+++|+|+... .+|||+|+. .+.|.||||++++||+..+++.||+.||+|+.
T Consensus 3 av~~~i~~~~--~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~ 57 (130)
T cd04681 3 AVGVLILNED--GELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLK 57 (130)
T ss_pred eEEEEEEcCC--CcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCc
Confidence 4555655543 389999985 37999999999999999999999999999983
No 45
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=98.89 E-value=6.5e-09 Score=81.99 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=42.2
Q ss_pred EEEEEEEecCCCCeEEEEEecC--CeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 64 VEAVLLVELFKHPHLLLLQVRN--SIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~~~--~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+++++++..+ .+|||+++.. +.|.||||.+++||+..+++.||+.||.|+.
T Consensus 5 ~v~~ii~~~~--~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~ 57 (147)
T cd03671 5 NVGVVLFNED--GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLD 57 (147)
T ss_pred eEEEEEEeCC--CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 4444444333 5899999864 6999999999999999999999999999993
No 46
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.89 E-value=9.3e-09 Score=79.70 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=43.2
Q ss_pred EEEEEEEe-cCCCCeEEEEEec-CCeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 64 VEAVLLVE-LFKHPHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 64 V~aVilvh-~~~~phVLLlq~~-~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
|.|+|+.. +.+...|||+++. .+.|.||||.+++||+..+|++||+.||.|+
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~ 55 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGV 55 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCC
Confidence 34444443 3446789999975 4789999999999999999999999999999
No 47
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=98.89 E-value=8.2e-09 Score=79.15 Aligned_cols=40 Identities=30% Similarity=0.496 Sum_probs=36.8
Q ss_pred eEEEEEecC---CeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 77 HLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 77 hVLLlq~~~---~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+|||+++.. +.|.||||++++||+..+|++|||.||+|+.
T Consensus 12 ~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~ 54 (134)
T cd03675 12 RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWH 54 (134)
T ss_pred EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcc
Confidence 899999753 5899999999999999999999999999993
No 48
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.88 E-value=6.7e-09 Score=77.88 Aligned_cols=53 Identities=15% Similarity=0.392 Sum_probs=42.4
Q ss_pred eEEEEEEEEecCCCCeEEEEEecC-----CeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVRN-----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~~-----~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+.+.+++|.++ ..+|||.|++. |.|.||||.+++||+..+++.|++.||+|+.
T Consensus 4 ~~~~~~ii~~~--~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~ 61 (129)
T PRK10776 4 LQIAVGIIRNP--NNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGIT 61 (129)
T ss_pred eEEEEEEEECC--CCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCc
Confidence 34444444433 34799999863 7999999999999999999999999999983
No 49
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.87 E-value=3.4e-08 Score=77.82 Aligned_cols=52 Identities=29% Similarity=0.419 Sum_probs=43.7
Q ss_pred eEEEEEEEEecCCCCeEEEEEecC------CeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVRN------SIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~~------~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
|++.++++.++. +|||.++.. +.|.+|||.+++||+..+|++||+.||+|..
T Consensus 1 ~~~~~~i~~~~g---~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~ 58 (133)
T cd04685 1 RAARVVLLDPDD---RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGIT 58 (133)
T ss_pred CeEEEEEEcCCC---eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCc
Confidence 466777775543 799988742 5899999999999999999999999999984
No 50
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.86 E-value=1.7e-08 Score=79.07 Aligned_cols=89 Identities=25% Similarity=0.379 Sum_probs=58.6
Q ss_pred eEEEEEec----CCeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeeccCCCcCCCCCCC-----
Q 029260 77 HLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFETLLFPYFP----- 147 (196)
Q Consensus 77 hVLLlq~~----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwRp~Fet~~yPYlP----- 147 (196)
.+||+++. .+.|.||||++++||+..+++.||+.||+|+.-. ...+ ..+.....+.....++-|++
T Consensus 16 ~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~----~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (118)
T cd04674 16 GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD----PADI-RLFDVRSAPDGTLLVFGLLPERRAA 90 (118)
T ss_pred CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc----ccEE-EEEEEEecCCCeEEEEEEEeccccc
Confidence 47777774 3899999999999999999999999999998421 0111 12333333443344454443
Q ss_pred --CCCCCceeeeEEEEEEcCCceEE
Q 029260 148 --PNVKRPKECTKLFLVKLPVSQKF 170 (196)
Q Consensus 148 --~Hit~pKE~~klylV~Lpe~~~f 170 (196)
+..+-..|....+.|..++...|
T Consensus 91 ~~~~~~~~~E~~~~~~~~~~~~~~~ 115 (118)
T cd04674 91 DLPPFEPTDETTERAVVTAPSELAF 115 (118)
T ss_pred cCCCCCCCcceeeEEEccCCccccc
Confidence 23344566777777777666544
No 51
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.84 E-value=2.4e-08 Score=83.72 Aligned_cols=119 Identities=21% Similarity=0.262 Sum_probs=70.6
Q ss_pred CeeEEEEEEEEecCCCCeEEEEEec------CCeeecCCcccCCC-CChHHHHHHHHHHHhCCCCCCCccceEEeeeeee
Q 029260 60 LRTCVEAVLLVELFKHPHLLLLQVR------NSIFKLPGGRLRPG-ESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (196)
Q Consensus 60 mRrsV~aVilvh~~~~phVLLlq~~------~~~~~LPGGrl~~g-E~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~ 132 (196)
.|.+|+.|.++ +.+.++||+.|+. .|.|.||||++++| |+++++.+||+.||.|... ..|+ ++|.
T Consensus 29 ~~~aavvl~l~-~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~----~~~~---~lg~ 100 (190)
T PRK10707 29 QRQAAVLIPIV-RRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPP----SAVE---VIGV 100 (190)
T ss_pred CCCeEEEEEEE-ECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCc----cceE---EEEE
Confidence 35555555454 3456799999965 37899999999986 5689999999999999943 2333 3333
Q ss_pred ee----ccCCCcCCCCC---CC---CCCCCceeeeEEEEEEcCCc------eEEeeCCCCeEEecccceeecC
Q 029260 133 WW----KPDFETLLFPY---FP---PNVKRPKECTKLFLVKLPVS------QKFFVPKNLKLLAVPLCQIHEN 189 (196)
Q Consensus 133 Ww----Rp~Fet~~yPY---lP---~Hit~pKE~~klylV~Lpe~------~~f~vPkn~kL~AvPLfelydN 189 (196)
.+ .++| ...|| ++ +....+-|...++.|.|-+- ..+.+.++..-..+|+|. |++
T Consensus 101 l~~~~~~~~~--~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 170 (190)
T PRK10707 101 LPPVDSSTGY--QVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGRYHPLDIYRRGQSHRVWLSW-YEQ 170 (190)
T ss_pred eeeeeccCCc--EEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCcccceeEEEeeCCcEEEEEEEE-eCC
Confidence 22 1222 12222 11 11125678888887766441 112222333335677775 444
No 52
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=98.84 E-value=1.8e-08 Score=81.37 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=45.3
Q ss_pred CC-eeEEEEEEEEecCCCCeEEEEEecC------CeeecC-CcccCCCCChHHHHHHHHHHHhCCC
Q 029260 59 GL-RTCVEAVLLVELFKHPHLLLLQVRN------SIFKLP-GGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 59 Gm-RrsV~aVilvh~~~~phVLLlq~~~------~~~~LP-GGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
|. ++.+++|++++.+ .+|||.||.. |.|.+| ||.+++||+..+|++||+.||+|+.
T Consensus 26 ~~~~~~~v~v~i~~~~--~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~ 89 (165)
T cd02885 26 GTLLHRAFSVFLFNSK--GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGIT 89 (165)
T ss_pred CCcceeEEEEEEEcCC--CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 44 4777788777654 4799999875 556664 6999999999999999999999994
No 53
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.82 E-value=4.9e-08 Score=88.13 Aligned_cols=52 Identities=31% Similarity=0.480 Sum_probs=44.2
Q ss_pred eeEEEEEEEEecCCCCeEEEEEec----CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
..+|.||++. + -+|||+|+. .|.|.||||.+++||+..+|++|||.||+|+.
T Consensus 203 ~vtv~avv~~-~---g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~ 258 (340)
T PRK05379 203 FVTVDAVVVQ-S---GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLK 258 (340)
T ss_pred ceEEEEEEEE-C---CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCc
Confidence 4677776653 2 289999986 37899999999999999999999999999983
No 54
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.82 E-value=1.9e-08 Score=75.60 Aligned_cols=49 Identities=31% Similarity=0.487 Sum_probs=40.7
Q ss_pred EEEEEEecCCCCeEEEEEec------CCeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 65 EAVLLVELFKHPHLLLLQVR------NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 65 ~aVilvh~~~~phVLLlq~~------~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
.++++.+++ .+|||.|+. .+.|.||||++++||+..+|+.||+.||.|+
T Consensus 4 v~~vv~~~~--~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl 58 (129)
T cd04699 4 VAALIVKDV--GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGL 58 (129)
T ss_pred EEEEEECCC--CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCc
Confidence 444444432 489999886 3589999999999999999999999999998
No 55
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.80 E-value=2.9e-08 Score=77.34 Aligned_cols=52 Identities=21% Similarity=0.377 Sum_probs=44.0
Q ss_pred eEEEEEecCCeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeec
Q 029260 77 HLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWK 135 (196)
Q Consensus 77 hVLLlq~~~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwR 135 (196)
+|||+++..+.|.||||++++||+..+|++||+.||.|.. ....+.++.+.-
T Consensus 12 ~vLl~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~-------~~~~~~l~~~~~ 63 (118)
T cd04665 12 GLLLVRHKDRGWEFPGGHVEPGETIEEAARREVWEETGAE-------LGSLTLVGYYQV 63 (118)
T ss_pred EEEEEEeCCCEEECCccccCCCCCHHHHHHHHHHHHHCCc-------cCceEEEEEEEe
Confidence 8999999888999999999999999999999999999993 233455565543
No 56
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=98.79 E-value=5.9e-08 Score=79.97 Aligned_cols=60 Identities=22% Similarity=0.159 Sum_probs=49.0
Q ss_pred hccCCCeeEEEEEEEEecCCCCeEEEEEecCCeeecC-------CcccCCCCChHHHHHHHHHHHhCCC
Q 029260 55 YDAHGLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLP-------GGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 55 y~~~GmRrsV~aVilvh~~~~phVLLlq~~~~~~~LP-------GGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
....|..+.+.+|++++.. .+|||.|++.+.+.+| ||++++||+..+|++|||.||+|+.
T Consensus 27 ~~~~~~~h~av~v~i~~~~--g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~ 93 (184)
T PRK03759 27 HTADTPLHLAFSCYLFDAD--GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVE 93 (184)
T ss_pred HhcCCCeeeEEEEEEEcCC--CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 3456888888888887654 4799999875555555 5999999999999999999999994
No 57
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=98.78 E-value=2.7e-08 Score=76.50 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=41.2
Q ss_pred eEEEEEEEEecCCCCeEEEEEec-----CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVR-----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~-----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
++|.++++ +.+ ..|||+++. .+.|.+|||.+++||+..+|+.||+.||+|+.
T Consensus 3 ~~v~v~~~-~~~--~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~ 59 (137)
T cd03424 3 DAVAVLPY-DDD--GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYE 59 (137)
T ss_pred CEEEEEEE-cCC--CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCC
Confidence 34444444 332 589998753 35899999999999999999999999999994
No 58
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.78 E-value=3e-08 Score=79.37 Aligned_cols=51 Identities=29% Similarity=0.338 Sum_probs=43.8
Q ss_pred EEEEEEEecCCCCeEEEEEec------CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 64 VEAVLLVELFKHPHLLLLQVR------NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~~------~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+.+||+++.+ .+|||.++. .|.|.||||.+++||+..+++.||+.||+|+.
T Consensus 3 ~v~viv~~~~--~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~ 59 (143)
T cd04694 3 GVAVLLQSSD--QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLT 59 (143)
T ss_pred EEEEEEEcCC--CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCC
Confidence 5677776654 489999886 36899999999999999999999999999994
No 59
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.77 E-value=1.8e-08 Score=76.86 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=39.1
Q ss_pred EEEEEecCCCCeEEEEEecC------CeeecC-CcccCCCCChHHHHHHHHHHHhCCC
Q 029260 66 AVLLVELFKHPHLLLLQVRN------SIFKLP-GGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 66 aVilvh~~~~phVLLlq~~~------~~~~LP-GGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
.|+++++. .+|||.|+.. |.|.+| ||++++||+. +|++||+.||+|+.
T Consensus 4 ~v~~~~~~--g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~ 58 (127)
T cd04693 4 HVCIFNSK--GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLE 58 (127)
T ss_pred EEEEEeCC--CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCC
Confidence 34444443 4899988763 689998 9999999999 99999999999994
No 60
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.76 E-value=3.1e-08 Score=78.69 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=43.6
Q ss_pred EEEEEecCCCCeEEEEEecCCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 66 AVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 66 aVilvh~~~~phVLLlq~~~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
++++..+.+...||+.|.+.+.|.||||.+++||+..++++|||.||.|..
T Consensus 4 ~~~~~~~~~~~~ll~~r~~~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~ 54 (126)
T cd04663 4 PAVLRRNGEVLELLVFEHPLAGFQIVKGTVEPGETPEAAALRELQEESGLP 54 (126)
T ss_pred EEEEEeCCceEEEEEEEcCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCe
Confidence 344445555678999988887899999999999999999999999999993
No 61
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=98.76 E-value=2.1e-08 Score=78.23 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=38.0
Q ss_pred CCCeEEEEEecC---CeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 74 KHPHLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 74 ~~phVLLlq~~~---~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
+...+||+|+.. +.|.||||++++||+..+|++||+.||+|+
T Consensus 11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl 55 (132)
T cd04661 11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGN 55 (132)
T ss_pred cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCC
Confidence 346899999853 689999999999999999999999999999
No 62
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=98.76 E-value=1.2e-07 Score=77.90 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=64.8
Q ss_pred eEEEEEecCCeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeeccCCCcCCCCCCCCCCCCceee
Q 029260 77 HLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFETLLFPYFPPNVKRPKEC 156 (196)
Q Consensus 77 hVLLlq~~~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwRp~Fet~~yPYlP~Hit~pKE~ 156 (196)
++||++.....|.||||++++||++.+|++|||.||.|.. ...-.++|.++-.. ....++
T Consensus 36 ~~LL~~~~~~~~elPgG~vE~gEt~~eaA~REl~EETG~~-------~~~~~~lg~~~~~~-------------~~~~~~ 95 (156)
T TIGR02705 36 QWLLTEHKRRGLEFPGGKVEPGETSKEAAIREVMEETGAI-------VKELHYIGQYEVEG-------------ESTDFV 95 (156)
T ss_pred EEEEEEEcCCcEECCceecCCCCCHHHHHHHHHHHHhCcE-------eeeeEEEEEEEecC-------------CCcEEE
Confidence 7999988777799999999999999999999999999983 33445666644211 114577
Q ss_pred eEEEEEEcCCceEEeeCCCCeEE-ecccceeec
Q 029260 157 TKLFLVKLPVSQKFFVPKNLKLL-AVPLCQIHE 188 (196)
Q Consensus 157 ~klylV~Lpe~~~f~vPkn~kL~-AvPLfelyd 188 (196)
+.+|+.+..+-... +..+... .+++=++-+
T Consensus 96 ~~vf~A~~~~~~~~--~e~~E~~~~~~~~~~~~ 126 (156)
T TIGR02705 96 KDVYFAEVSALESK--DDYLETKGPVLLQEIPD 126 (156)
T ss_pred EEEEEEEEeccccC--CCceeeEeEEEHHHHHH
Confidence 88998887644322 5666666 466655533
No 63
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=98.72 E-value=9.8e-08 Score=78.73 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=57.7
Q ss_pred ceEEEeeCCceeeccccCCCCCChhHHHHHHHHHhhhccCCCeeEEEEEEEEecCCCCeEEEEEecC------Cee-ecC
Q 029260 19 YVVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLLLQVRN------SIF-KLP 91 (196)
Q Consensus 19 ~~~~lYPl~nY~Fg~k~~~~ekd~sv~~rl~rl~~~y~~~GmRrsV~aVilvh~~~~phVLLlq~~~------~~~-~LP 91 (196)
.-|+||--.+-.-|..+ +......|+++.+..|++.+.. ..|||.++.+ |.| .+|
T Consensus 10 e~~~~~d~~~~~~g~~~----------------~~~~~~~~~~h~~~~v~v~~~~--g~iLL~~R~~~~~~~pg~~~~~p 71 (180)
T PRK15393 10 EWVDIVNENNEVIAQAS----------------REQMRAQCLRHRATYIVVHDGM--GKILVQRRTETKDFLPGMLDATA 71 (180)
T ss_pred eEEEEECCCCCEeeEEE----------------HHHHhhCCCceEEEEEEEECCC--CeEEEEEeCCCCCCCCCcccccC
Confidence 34677777666666542 1112235888888888876543 5888877753 223 689
Q ss_pred CcccCCCCChHHHHHHHHHHHhCCC
Q 029260 92 GGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 92 GGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
||++++||+..+|+.|||.||+|+.
T Consensus 72 GG~ve~GEs~~eAA~REL~EEtGl~ 96 (180)
T PRK15393 72 GGVVQAGEQLLESARREAEEELGIA 96 (180)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999994
No 64
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=98.72 E-value=3.6e-08 Score=76.61 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=42.5
Q ss_pred EEEEEEEecCCCCeEEEEEec---CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 64 VEAVLLVELFKHPHLLLLQVR---NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~~---~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
|+.|++.+. ..+|||+|+. .+.|.||||++++||+..+|+.|||.||+|+.
T Consensus 2 ~v~i~l~~~--~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~ 55 (131)
T cd03429 2 AVIVLVIDG--GDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIR 55 (131)
T ss_pred eEEEEEEeC--CCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCce
Confidence 445555443 2589999886 47999999999999999999999999999983
No 65
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=98.72 E-value=6.6e-08 Score=71.27 Aligned_cols=51 Identities=27% Similarity=0.567 Sum_probs=41.3
Q ss_pred EEEEEEEecCCCCeEEEEEec-----CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 64 VEAVLLVELFKHPHLLLLQVR-----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~~-----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
|..++++++. ..+||.|+. .|.|.||||.++++|+..+++.|++.||+|+.
T Consensus 3 ~~~~~i~~~~--~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~ 58 (124)
T cd03425 3 VVAAIIIDDD--GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIE 58 (124)
T ss_pred EEEEEEECCC--CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcE
Confidence 3444444432 489998885 36899999999999999999999999999983
No 66
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=98.71 E-value=7.1e-08 Score=77.67 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=45.0
Q ss_pred CCeeEEEEEEEEecCCCCeEEEEEecC--CeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 59 GLRTCVEAVLLVELFKHPHLLLLQVRN--SIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 59 GmRrsV~aVilvh~~~~phVLLlq~~~--~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
..|.+|.++++..+. +|||.|+.. +.|.||||.+++||+..+|+.||+.||+|+.
T Consensus 6 ~~~~~v~~~i~~~~g---~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~ 62 (156)
T PRK00714 6 GYRPNVGIILLNRQG---QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLR 62 (156)
T ss_pred CCCCeEEEEEEecCC---EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCC
Confidence 356666666553332 899999843 7999999999999999999999999999993
No 67
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.69 E-value=5.2e-08 Score=76.47 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=42.6
Q ss_pred EEEEEEEEecCCCCeEEEEEecC------Ceeec-CCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 63 CVEAVLLVELFKHPHLLLLQVRN------SIFKL-PGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 63 sV~aVilvh~~~~phVLLlq~~~------~~~~L-PGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+|...++-...+..+||+.||.. |.|.+ |||++++||+..+|+.|||.||+|+.
T Consensus 4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~ 64 (144)
T cd04692 4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLD 64 (144)
T ss_pred EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCC
Confidence 44444443444557888888763 68888 69999999999999999999999994
No 68
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=98.63 E-value=6e-07 Score=65.11 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=38.2
Q ss_pred CeEEEEEecC---CeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 76 PHLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 76 phVLLlq~~~---~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
.+|||.|+.. +.|.+|||.++.||+..+++.||+.||+|+.
T Consensus 12 ~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~ 55 (123)
T cd02883 12 GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLD 55 (123)
T ss_pred CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCcc
Confidence 5899999875 8999999999999999999999999999994
No 69
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=98.58 E-value=2.1e-07 Score=76.79 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=40.1
Q ss_pred EEEEEEecCCCCeEEEEEec-----CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 65 EAVLLVELFKHPHLLLLQVR-----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 65 ~aVilvh~~~~phVLLlq~~-----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
++|+.+. +..+|||++.- ...|.||||.+++||++.+|++|||.||.|..
T Consensus 50 v~v~~~~--~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~ 104 (185)
T PRK11762 50 VMIVPIL--DDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFG 104 (185)
T ss_pred EEEEEEe--CCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCC
Confidence 4444333 34479988862 35799999999999999999999999999994
No 70
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.55 E-value=1.7e-07 Score=71.96 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=40.2
Q ss_pred EEEEEEEEecCCCCeEEEEEecC------Ceeec-CCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 63 CVEAVLLVELFKHPHLLLLQVRN------SIFKL-PGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 63 sV~aVilvh~~~~phVLLlq~~~------~~~~L-PGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
++.++++ +.+ .+|||.|+.. |.|.+ |||++++||+..++++||+.||+|+.
T Consensus 2 ~~~v~i~-~~~--~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~ 59 (126)
T cd04697 2 ATYIFVF-NSE--GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGID 59 (126)
T ss_pred eEEEEEE-cCC--CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCC
Confidence 4455554 333 4888877752 56888 79999999999999999999999984
No 71
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.53 E-value=3.1e-07 Score=73.21 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=40.7
Q ss_pred EEEEEe-cCCCCeEEEEEe--------cCCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 66 AVLLVE-LFKHPHLLLLQV--------RNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 66 aVilvh-~~~~phVLLlq~--------~~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
|+++.. ..+...|||+++ ..+.|.||||+++.||++.++++||+.||+|+.
T Consensus 4 g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~ 63 (126)
T cd04662 4 GILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFC 63 (126)
T ss_pred EEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCc
Confidence 444443 334557888873 247999999999999999999999999999994
No 72
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.50 E-value=3.8e-07 Score=66.66 Aligned_cols=52 Identities=33% Similarity=0.464 Sum_probs=41.8
Q ss_pred EEEEEEEecCCCCeEEEEEecCC--eeecCCcccCCCCChHH-HHHHHHHHHhCCC
Q 029260 64 VEAVLLVELFKHPHLLLLQVRNS--IFKLPGGRLRPGESDIY-GLKRKLTRKLSLN 116 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~~~~--~~~LPGGrl~~gE~~~e-~LkReL~EeLg~~ 116 (196)
+..++++.... ..||+.++... .|.+|||++++||+..+ |++||+.||+|+.
T Consensus 13 ~~~~~~~~~~~-~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~ 67 (161)
T COG0494 13 AVAVLVGRDGP-GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLR 67 (161)
T ss_pred eEEEEEecCCC-CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCe
Confidence 34444443333 78999988753 89999999999999988 9999999999994
No 73
>PRK08999 hypothetical protein; Provisional
Probab=98.49 E-value=4.1e-07 Score=79.77 Aligned_cols=41 Identities=29% Similarity=0.643 Sum_probs=37.2
Q ss_pred CeEEEEEec-----CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 76 PHLLLLQVR-----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 76 phVLLlq~~-----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
.+|||.|+. .|.|.||||++++||+..+++.||+.||+|..
T Consensus 17 ~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~ 62 (312)
T PRK08999 17 GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIE 62 (312)
T ss_pred CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCc
Confidence 379998885 37999999999999999999999999999984
No 74
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=98.39 E-value=1e-06 Score=70.90 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=46.4
Q ss_pred cCCCeeEEEEEEEEecCCCCeEEEEEecC------CeeecC-CcccCCCCChHHHHHHHHHHHhCCC
Q 029260 57 AHGLRTCVEAVLLVELFKHPHLLLLQVRN------SIFKLP-GGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 57 ~~GmRrsV~aVilvh~~~~phVLLlq~~~------~~~~LP-GGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
..|+++.+.+|+|++.. .+|||.||.. |.|.+| ||.+++|| .+|+.|||.||+|+.
T Consensus 22 ~~g~~h~~v~v~v~~~~--g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~ 84 (158)
T TIGR02150 22 QETPLHRAFSVFLFNEE--GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIP 84 (158)
T ss_pred cCCCeEEEEEEEEEcCC--CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCC
Confidence 46898888888887654 4799988875 667665 69999999 499999999999994
No 75
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=98.37 E-value=7.5e-07 Score=77.99 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=37.1
Q ss_pred CeEEEEEec---CCeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 76 PHLLLLQVR---NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 76 phVLLlq~~---~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
-+|||.|+. .+.|.||||.+++||+.++|++||+.||.|+
T Consensus 143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl 185 (256)
T PRK00241 143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGI 185 (256)
T ss_pred CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCc
Confidence 489999875 4799999999999999999999999999999
No 76
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.34 E-value=1.9e-06 Score=70.48 Aligned_cols=87 Identities=20% Similarity=0.226 Sum_probs=70.4
Q ss_pred hhccCCCeeEEEEEEEEecCCCCeEEEEEecC--CeeecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeee
Q 029260 54 NYDAHGLRTCVEAVLLVELFKHPHLLLLQVRN--SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLG 131 (196)
Q Consensus 54 ~y~~~GmRrsV~aVilvh~~~~phVLLlq~~~--~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg 131 (196)
.|+..|.|..+-+|++--+.+.-.|||++... ..|-+|+|..+++|+..|+..||-.||-|+. =.++++++
T Consensus 2 ry~~~G~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~-------G~l~~~~~ 74 (145)
T KOG2839|consen 2 RYDPAGFRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVK-------GKLGRLLG 74 (145)
T ss_pred ccCCCCcEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCce-------eeeecccc
Confidence 57888998888888776555557999999875 5899999999999999999999999999994 46788888
Q ss_pred eeeccCCCcCCCCCCCCCCCCcee
Q 029260 132 MWWKPDFETLLFPYFPPNVKRPKE 155 (196)
Q Consensus 132 ~WwRp~Fet~~yPYlP~Hit~pKE 155 (196)
.+|.-.+ .-|.++||-
T Consensus 75 g~~~~~~--------~~~~~~~k~ 90 (145)
T KOG2839|consen 75 GFEDFLS--------KKHRTKPKG 90 (145)
T ss_pred chhhccC--------hhhcccccc
Confidence 8886544 237777553
No 77
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.27 E-value=1.5e-06 Score=73.39 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=39.0
Q ss_pred CCCCeEEEEEec-CCeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 73 FKHPHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 73 ~~~phVLLlq~~-~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
.+...||++|+. ++.|.||||.+++||+..++++|||.||.+.
T Consensus 46 ~~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l 89 (186)
T cd03670 46 KPILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALN 89 (186)
T ss_pred CCeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcc
Confidence 556789999986 5899999999999999999999999999965
No 78
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=98.22 E-value=4.3e-06 Score=68.25 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=48.0
Q ss_pred cCCCeeEEEEEE-EEecCC-CCeEEEEEecC------Cee-ecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 57 AHGLRTCVEAVL-LVELFK-HPHLLLLQVRN------SIF-KLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 57 ~~GmRrsV~aVi-lvh~~~-~phVLLlq~~~------~~~-~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
..|+++.+.-|. ++.+.+ ..+|++-||.. |.| .+|||.+++||++.++++|||.||+|+.
T Consensus 27 ~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~ 95 (180)
T cd03676 27 LFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLP 95 (180)
T ss_pred cCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 568888777764 333332 46888887763 778 6999999999999999999999999994
No 79
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=98.20 E-value=4.1e-06 Score=69.83 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=40.2
Q ss_pred EEEEEEEecCCCCeEEEEEe----------cCCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 64 VEAVLLVELFKHPHLLLLQV----------RNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~----------~~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+++|++.. ....+|||++. ....|.||||.+++||++.++..|||.||.|..
T Consensus 46 ~v~vl~~~-~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~ 107 (185)
T TIGR00052 46 AAAVLLYD-PKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQ 107 (185)
T ss_pred eEEEEEEE-CCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccce
Confidence 34444443 23457888875 124789999999999999999999999999994
No 80
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=98.02 E-value=2.9e-05 Score=65.76 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=39.9
Q ss_pred EEEEEEEEecCCCCeEEEEEe-c--C-------CeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 63 CVEAVLLVELFKHPHLLLLQV-R--N-------SIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 63 sV~aVilvh~~~~phVLLlq~-~--~-------~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
.+++||.+++.+ .+|||++. + . -.|++|+|.+++||++.+|.+|||.||.|..
T Consensus 50 ~~V~il~~~~~~-~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~ 112 (202)
T PRK10729 50 HAAVLLPFDPVR-DEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLI 112 (202)
T ss_pred CeEEEEEEECCC-CEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCce
Confidence 345566555332 36777654 2 1 2589999999999999999999999999994
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=97.98 E-value=1.7e-05 Score=71.22 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=43.4
Q ss_pred eeEEEEEEEE-ecCCCCeEEEEEec-----CCeeecCCcccCCC-CChHHHHHHHHHHHhCCC
Q 029260 61 RTCVEAVLLV-ELFKHPHLLLLQVR-----NSIFKLPGGRLRPG-ESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 61 RrsV~aVilv-h~~~~phVLLlq~~-----~~~~~LPGGrl~~g-E~~~e~LkReL~EeLg~~ 116 (196)
|..++||+++ +..+.++|+|++.- .-.|+||||.++++ |+.+++.+|||.||.|..
T Consensus 127 rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~ 189 (291)
T PLN03143 127 RGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIK 189 (291)
T ss_pred cCCeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCc
Confidence 3335566554 55677888887663 24789999999985 899999999999999994
No 82
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=97.65 E-value=0.0002 Score=52.74 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=34.8
Q ss_pred CeEEEEEec-----CCeeecCCcccCCCCChHHHHHHHHHHHhC
Q 029260 76 PHLLLLQVR-----NSIFKLPGGRLRPGESDIYGLKRKLTRKLS 114 (196)
Q Consensus 76 phVLLlq~~-----~~~~~LPGGrl~~gE~~~e~LkReL~EeLg 114 (196)
.++||-||+ .|.|.||||+++.+|++++++.|++.++++
T Consensus 14 ~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~ 57 (118)
T cd03431 14 GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALR 57 (118)
T ss_pred CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhC
Confidence 479999986 389999999999999999999999988875
No 83
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=97.43 E-value=0.00035 Score=61.48 Aligned_cols=97 Identities=22% Similarity=0.311 Sum_probs=69.1
Q ss_pred eeEEEEEEEEec-CCCCeEEEEEec------CCeeecCCcccCCCCCh-HHHHHHHHHHHhCCCCCC-----------Cc
Q 029260 61 RTCVEAVLLVEL-FKHPHLLLLQVR------NSIFKLPGGRLRPGESD-IYGLKRKLTRKLSLNEDG-----------GE 121 (196)
Q Consensus 61 RrsV~aVilvh~-~~~phVLLlq~~------~~~~~LPGGrl~~gE~~-~e~LkReL~EeLg~~~~~-----------~~ 121 (196)
|.+.+-|.|+.. .+.-.|||.++. .|.-.||||+.++.+.. +.+..||-.||+|+..+- ..
T Consensus 42 ~~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r 121 (246)
T KOG3069|consen 42 RKAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLR 121 (246)
T ss_pred CCccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeec
Confidence 788888888877 445678887775 38999999999998854 789999999999995210 01
Q ss_pred cceEEeeeeeeeeccCCCcCCCCCCCCCCCCceeeeEEEEEEc
Q 029260 122 VDWEVGECLGMWWKPDFETLLFPYFPPNVKRPKECTKLFLVKL 164 (196)
Q Consensus 122 ~~w~Vge~lg~WwRp~Fet~~yPYlP~Hit~pKE~~klylV~L 164 (196)
..|.|--.+|--....- +|-++-.+-|+..+|-|=|
T Consensus 122 ~~~~v~p~v~~l~~~~~-------l~~~~ln~gEv~~~F~VPL 157 (246)
T KOG3069|consen 122 SGWSVFPVVGFLSDKKI-------LPSLRLNSGEVESAFWVPL 157 (246)
T ss_pred cCcccceeEEEEecccc-------cccccCCchheeeeeeeeH
Confidence 33444444443222110 2778889999999998866
No 84
>PLN02791 Nudix hydrolase homolog
Probab=97.40 E-value=0.00055 Score=68.61 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=50.3
Q ss_pred hhccCCCeeEEEEEEEEecCCCCeEEEEEec------CCeeec-CCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 54 NYDAHGLRTCVEAVLLVELFKHPHLLLLQVR------NSIFKL-PGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 54 ~y~~~GmRrsV~aVilvh~~~~phVLLlq~~------~~~~~L-PGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
...+.|+.+.+.-|.|++.. ...|||-||. .|.|.+ +||.+.+||+..+++.|||.||||+.
T Consensus 24 evH~~Gl~HrAvhVwIfn~~-~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~ 92 (770)
T PLN02791 24 EVHRDGDYHRAVHVWIYSES-TQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGII 92 (770)
T ss_pred hhccCCCceEEEEEEEEECC-CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 34567999999988888742 3467666664 278988 89999999999999999999999984
No 85
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=97.28 E-value=0.0012 Score=55.62 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=37.0
Q ss_pred EEEEEEEecCCCCeEEEEEe-cCC----------eeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 64 VEAVLLVELFKHPHLLLLQV-RNS----------IFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~-~~~----------~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
+++|++++.. .-+|||++. +-+ .|+||+|.+++| ++.+|.+|||.||.|..
T Consensus 47 ~v~Vl~~~~~-~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~ 108 (191)
T PRK15009 47 GATILLYNAK-KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYE 108 (191)
T ss_pred EEEEEEEECC-CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCc
Confidence 4555554432 336777664 222 489999999976 69999999999999984
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=96.88 E-value=0.0029 Score=54.76 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=45.8
Q ss_pred eEEEEEEEEecCCCCeEEEEEec---CCe--eecCCcccCCCCChHHHHHHHHHHHhCCCC
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVR---NSI--FKLPGGRLRPGESDIYGLKRKLTRKLSLNE 117 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~---~~~--~~LPGGrl~~gE~~~e~LkReL~EeLg~~~ 117 (196)
-+|.-++++...++|+|+|.+.- .|. .+||-|-++.||+.+.+..|||.||.|..+
T Consensus 74 dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~g 134 (225)
T KOG3041|consen 74 DGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKG 134 (225)
T ss_pred CeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccc
Confidence 44555666788999999997642 343 489999999999999999999999999853
No 87
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=96.87 E-value=0.0015 Score=59.11 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=37.4
Q ss_pred CeEEEEEec------CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 76 PHLLLLQVR------NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 76 phVLLlq~~------~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
-+||++|.. .|-|++|+|++++||+...|+.||..|+.|+.
T Consensus 127 ~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid 173 (295)
T KOG0648|consen 127 KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGID 173 (295)
T ss_pred ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcc
Confidence 699999864 37899999999999999999999999999973
No 88
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=96.78 E-value=0.0045 Score=54.46 Aligned_cols=59 Identities=27% Similarity=0.263 Sum_probs=42.3
Q ss_pred ccCCCeeEEEEEEEEecCCCCeEEEEEecC------Cee-----ecCCcccCCCC----C---------hHHHHHHHHHH
Q 029260 56 DAHGLRTCVEAVLLVELFKHPHLLLLQVRN------SIF-----KLPGGRLRPGE----S---------DIYGLKRKLTR 111 (196)
Q Consensus 56 ~~~GmRrsV~aVilvh~~~~phVLLlq~~~------~~~-----~LPGGrl~~gE----~---------~~e~LkReL~E 111 (196)
...|+.+.+..|+|.+..+ .|||-||.. |.| -.|++..++|| + ..+|..|||.|
T Consensus 50 ~~~gl~Hra~~v~i~n~~g--~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~E 127 (247)
T PLN02552 50 EPRGLLHRAFSVFLFNSKY--ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLH 127 (247)
T ss_pred cCCCceEEEEEEEEEcCCC--eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHH
Confidence 3568999999999987654 677777664 456 44555544443 1 46899999999
Q ss_pred HhCCC
Q 029260 112 KLSLN 116 (196)
Q Consensus 112 eLg~~ 116 (196)
|||+.
T Consensus 128 ElGI~ 132 (247)
T PLN02552 128 ELGIP 132 (247)
T ss_pred HhCCC
Confidence 99995
No 89
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=96.63 E-value=0.0043 Score=56.84 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=43.5
Q ss_pred EEEEEEecCCCCeEEEEEec---CCeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 65 EAVLLVELFKHPHLLLLQVR---NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 65 ~aVilvh~~~~phVLLlq~~---~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
..|+++-+|+..|.||-+.. .|-|..+-|-++|||+-+||..||.-||-|+
T Consensus 189 vVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi 242 (345)
T KOG3084|consen 189 VVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGI 242 (345)
T ss_pred eEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCc
Confidence 34445557888899887754 4899999999999999999999999999998
No 90
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.0022 Score=56.43 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=33.2
Q ss_pred CeEEEEEec-CCeeecCCcccCCCCChHHHHHHHHHHHh
Q 029260 76 PHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKL 113 (196)
Q Consensus 76 phVLLlq~~-~~~~~LPGGrl~~gE~~~e~LkReL~EeL 113 (196)
-.++.+|+. ++.|.+|||-++|||.--..||||+.||-
T Consensus 139 le~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 139 LEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred eEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 356677876 79999999999999999999999998864
No 91
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.0061 Score=54.76 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=44.2
Q ss_pred eeEEEEEEEEecCCCCeEEEEEec---CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVR---NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~---~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
|+.=..|+++.+.+. |||+++. .|.|.+--|-+++|||=++|..||..||.|+.
T Consensus 142 R~dP~vIv~v~~~~~--ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~ 198 (279)
T COG2816 142 RIDPCVIVAVIRGDE--ILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIK 198 (279)
T ss_pred CCCCeEEEEEecCCc--eeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeE
Confidence 445555666665544 8999887 48888889999999999999999999999984
No 92
>PLN02839 nudix hydrolase
Probab=94.49 E-value=0.21 Score=46.67 Aligned_cols=96 Identities=19% Similarity=0.154 Sum_probs=58.4
Q ss_pred EEEEEEEecCCCCeEEEEEecC------Cee-ecCCcccCCCCChHHHHHHHHHHHhCCCCCCCccceEEeeeeeeeecc
Q 029260 64 VEAVLLVELFKHPHLLLLQVRN------SIF-KLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKP 136 (196)
Q Consensus 64 V~aVilvh~~~~phVLLlq~~~------~~~-~LPGGrl~~gE~~~e~LkReL~EeLg~~~~~~~~~w~Vge~lg~WwRp 136 (196)
|.-..+|+..+..++.+-||.. |.| -+-||.+..||+..|++.||..||.|+..+-......+|.+ . +
T Consensus 206 VHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~V-s-Y--- 280 (372)
T PLN02839 206 VHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAV-S-Y--- 280 (372)
T ss_pred EEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEE-E-E---
Confidence 3333444444556777766653 333 56679999999999999999999999964322223344422 1 1
Q ss_pred CCCcCCCCCCCCCCCCceeeeEEEEEEcCCceEEeeCCC
Q 029260 137 DFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKN 175 (196)
Q Consensus 137 ~Fet~~yPYlP~Hit~pKE~~klylV~Lpe~~~f~vPkn 175 (196)
=|+-...-+| |+.-+|-..||+.. +|+|
T Consensus 281 -------~~~~~~g~~~-evly~YDLeLP~df---~P~~ 308 (372)
T PLN02839 281 -------MDIDQYCFKR-DVLFCYDLELPQDF---VPKN 308 (372)
T ss_pred -------EEEcCCcccc-CEEEEeeeecCCcc---ccCC
Confidence 0111122233 66678888998863 4655
No 93
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=93.23 E-value=0.21 Score=40.95 Aligned_cols=32 Identities=16% Similarity=0.474 Sum_probs=30.3
Q ss_pred CCeeecCCcccCCCCChHHHHHHHHHHHhCCC
Q 029260 85 NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (196)
Q Consensus 85 ~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~ 116 (196)
.|.|.+|-|.+..||++..+..||..||+|+.
T Consensus 35 ~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~ 66 (161)
T COG4119 35 DGAWSIPKGEYTGGEDPWLAARREFSEEIGIC 66 (161)
T ss_pred CCcccccccccCCCcCHHHHHHHHhhhhhcee
Confidence 48999999999999999999999999999984
No 94
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=91.15 E-value=0.36 Score=36.16 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=23.8
Q ss_pred eEEEEEecC-----CeeecCCcccCCCCChHHHHHHHHHHHhCC
Q 029260 77 HLLLLQVRN-----SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 77 hVLLlq~~~-----~~~~LPGGrl~~gE~~~e~LkReL~EeLg~ 115 (196)
++||-||++ |.|.||.-..+ ++++.+.+.+.+.+.+|.
T Consensus 10 ~~Ll~kRp~~gll~GLwefP~~e~~-~~~~~~~l~~~~~~~~~~ 52 (114)
T PF14815_consen 10 RVLLEKRPEKGLLAGLWEFPLIESD-EEDDEEELEEWLEEQLGL 52 (114)
T ss_dssp EEEEEE--SSSTTTT-EE--EEE-S-SS-CHHHHHHHTCCSSS-
T ss_pred EEEEEECCCCChhhcCcccCEeCcc-CCCCHHHHHHHHHHHcCC
Confidence 799999874 89999999988 555577787777777776
No 95
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=70.66 E-value=6.1 Score=33.82 Aligned_cols=54 Identities=26% Similarity=0.283 Sum_probs=36.9
Q ss_pred eEEEEEEEEecCCCCeEEEEEecCCeeecCC-------cccCCCCChHHHHHHHHHHHhCCCC
Q 029260 62 TCVEAVLLVELFKHPHLLLLQVRNSIFKLPG-------GRLRPGESDIYGLKRKLTRKLSLNE 117 (196)
Q Consensus 62 rsV~aVilvh~~~~phVLLlq~~~~~~~LPG-------Grl~~gE~~~e~LkReL~EeLg~~~ 117 (196)
+.+-.+.|-+++ -.+||.||+...-..|| |-=-+||+-+++..|+|..|||++.
T Consensus 33 HrAFS~~lFne~--g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~ 93 (185)
T COG1443 33 HRAFSSFLFNER--GQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEP 93 (185)
T ss_pred HhhhheeEECCC--CceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCC
Confidence 445555665443 57788887753333333 2222999999999999999999964
No 96
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=53.93 E-value=10 Score=29.28 Aligned_cols=40 Identities=30% Similarity=0.417 Sum_probs=30.3
Q ss_pred CCeeEEEEEEEEecCCCCeEEEEEecCCeeecCCcccCCCCChHHHHHH--HHHHHhCC
Q 029260 59 GLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKR--KLTRKLSL 115 (196)
Q Consensus 59 GmRrsV~aVilvh~~~~phVLLlq~~~~~~~LPGGrl~~gE~~~e~LkR--eL~EeLg~ 115 (196)
.++..+.+|+++|.| |.|-++|.+.+++.-+| +..+.+|+
T Consensus 55 aL~~~A~~vil~HNH-----------------PsG~~~PS~~D~~~T~~l~~~~~~l~i 96 (113)
T cd08071 55 ALRHNAAAIILAHNH-----------------PSGDPTPSREDIELTKRLKEAGELLGI 96 (113)
T ss_pred HHHHhhheEEEEeeC-----------------CCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 467788999999977 88999999999887743 22345555
No 97
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.04 E-value=12 Score=32.25 Aligned_cols=40 Identities=28% Similarity=0.451 Sum_probs=30.4
Q ss_pred CCeeEEEEEEEEecCCCCeEEEEEecCCeeecCCcccCCCCChHHHHHH--HHHHHhCC
Q 029260 59 GLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKR--KLTRKLSL 115 (196)
Q Consensus 59 GmRrsV~aVilvh~~~~phVLLlq~~~~~~~LPGGrl~~gE~~~e~LkR--eL~EeLg~ 115 (196)
.++..+.+||++|.| |.|-.+|.+.|++.=+| +..+.+|+
T Consensus 155 Al~~~A~~vIlaHNH-----------------PSG~~~PS~~Di~~T~~l~~a~~~lgI 196 (218)
T TIGR00608 155 ALKLSASALILAHNH-----------------PSGEPSPSQEDILITERLRKAAELLGI 196 (218)
T ss_pred HHHhhCCeEEEEeec-----------------CCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 456778999999987 88999999999876543 34456665
No 98
>PRK00024 hypothetical protein; Reviewed
Probab=49.71 E-value=13 Score=32.02 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=30.3
Q ss_pred CCeeEEEEEEEEecCCCCeEEEEEecCCeeecCCcccCCCCChHHHHHH--HHHHHhCC
Q 029260 59 GLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKR--KLTRKLSL 115 (196)
Q Consensus 59 GmRrsV~aVilvh~~~~phVLLlq~~~~~~~LPGGrl~~gE~~~e~LkR--eL~EeLg~ 115 (196)
.++..+.+||++|.| |.|-.+|...+++.=+| +..+.+|+
T Consensus 161 Al~~~A~~iIl~HNH-----------------PSG~~~PS~~D~~~T~~l~~a~~~l~I 202 (224)
T PRK00024 161 ALKLNAAALILAHNH-----------------PSGDPEPSQADILITKRLKEAGELLGI 202 (224)
T ss_pred HHHhhccceEEEecC-----------------CCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 366778999999987 88999999999875443 33456665
No 99
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=48.65 E-value=7.3 Score=36.26 Aligned_cols=121 Identities=17% Similarity=0.261 Sum_probs=75.1
Q ss_pred hhccCCCeeEEEEEEEEecCCCCeEEEEE-ecCCeeecCCcccCCCCChHHHHHHHHHHHhCCC-----CCCCccceEE-
Q 029260 54 NYDAHGLRTCVEAVLLVELFKHPHLLLLQ-VRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN-----EDGGEVDWEV- 126 (196)
Q Consensus 54 ~y~~~GmRrsV~aVilvh~~~~phVLLlq-~~~~~~~LPGGrl~~gE~~~e~LkReL~EeLg~~-----~~~~~~~w~V- 126 (196)
.|.+--.|.-|-|.++-+.. .-.+||++ -....|.+|-|++...|++..|..|+..|+.|.. .+...-+..|
T Consensus 74 ~f~~yk~~iPv~ga~ild~~-~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~Ie~nI~ 152 (348)
T KOG2937|consen 74 DFAPYKARIPVRGAIILDEK-RSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEGIETNIR 152 (348)
T ss_pred hhccccCCCCCchHhhhhhh-hhhhheeeceecccccccCccccccchhhhcchhcccchhhcCHHHHhccccCcccchh
Confidence 34444567777777766544 44555544 3355699999999999999999999999999974 1111112222
Q ss_pred eeeeeeeecc--CCCcCCCCCCCCCCCCceeeeEEEEEEcCCceEEeeCCCCeE
Q 029260 127 GECLGMWWKP--DFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKL 178 (196)
Q Consensus 127 ge~lg~WwRp--~Fet~~yPYlP~Hit~pKE~~klylV~Lpe~~~f~vPkn~kL 178 (196)
|+....+-++ .-++..+|=+--||. +..=.++=+|.+...-.-|++++-
T Consensus 153 dq~~~~fIi~gvs~d~~f~~~v~~eis---~ihW~~l~~l~~t~~~s~~k~~~~ 203 (348)
T KOG2937|consen 153 DQLVRLFIINGVSEDTNFNPRVRKEIS---KIHWHYLDHLVPTDKKSGPKGVKS 203 (348)
T ss_pred hceeeeeeeccceeeeecchhhhcccc---ceeeeehhhhcccccccCCCcccc
Confidence 2222224442 223344554444443 333556678888888888988875
No 100
>PF06453 LT-IIB: Type II heat-labile enterotoxin , B subunit (LT-IIB); InterPro: IPR010503 These are B subunits from the type II heat-labile enterotoxin. The B subunits form a pentameric ring, which interacts with one A subunit. Thus, the structural arrangement of type I and type II heat-labile enterotoxins are very similar [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TII_F 1QCB_E 1QB5_D.
Probab=43.52 E-value=92 Score=24.81 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=29.3
Q ss_pred HHHHHHHhhhccCCCeeEEEEEEEEe-----cCCCCeEEEEEecCCeeecCCcccCCC
Q 029260 46 NRVLRMKSNYDAHGLRTCVEAVLLVE-----LFKHPHLLLLQVRNSIFKLPGGRLRPG 98 (196)
Q Consensus 46 ~rl~rl~~~y~~~GmRrsV~aVilvh-----~~~~phVLLlq~~~~~~~LPGGrl~~g 98 (196)
.--+.++++++.. .-..|++|=|+. ..+...|-+....++.|++|||+--|.
T Consensus 24 gvS~~Fkd~C~~T-TA~iV~~V~L~k~~sDvN~~t~GiYv~sstG~~w~Ipgg~~YPd 80 (122)
T PF06453_consen 24 GVSKHFKDNCNST-TAKIVQGVQLVKYISDVNKNTKGIYVVSSTGGVWFIPGGQDYPD 80 (122)
T ss_dssp ---HHHHHHHTTS-SSEEEEEE-EEEEEEE-STTT-EEEEEETTS-EEEE---SSTTH
T ss_pred cHHHHHHhhhhhh-HHHHHhhhhhhhhhhhccCCCCcEEEEeCCCCeEEccCCCcCch
Confidence 3345577888754 345566666552 345567777777789999999998774
No 101
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=31.05 E-value=1.4e+02 Score=25.12 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=24.3
Q ss_pred eeccccCCCCCChhHHHHHHHHHhhhccC
Q 029260 30 YFGSKEAIPFKDETLYNRVLRMKSNYDAH 58 (196)
Q Consensus 30 ~Fg~k~~~~ekd~sv~~rl~rl~~~y~~~ 58 (196)
||..+|++-..=.++.+.+.+++..|+-+
T Consensus 44 tlti~Da~G~~l~~i~~kll~l~~~yeI~ 72 (159)
T COG4894 44 TLTITDASGKTLVSIEQKLLSLLPRYEIS 72 (159)
T ss_pred eEEEEecCCCChHHHHHHHhhccceeEEE
Confidence 47777888877888999999999999864
No 102
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic. This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=28.02 E-value=49 Score=24.19 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=21.6
Q ss_pred eeEEEEEEEEecCCCCeEEEEEecCCeeecCCcccCCCCChHHHHH
Q 029260 61 RTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLK 106 (196)
Q Consensus 61 RrsV~aVilvh~~~~phVLLlq~~~~~~~LPGGrl~~gE~~~e~Lk 106 (196)
+.....|+++|.| |+|...|.+.+++..+
T Consensus 53 ~~~~~~v~i~HsH-----------------P~g~~~PS~~D~~~~~ 81 (101)
T cd08059 53 EIGMKVVGLVHSH-----------------PSGSCRPSEADLSLFT 81 (101)
T ss_pred hCCCcEEEEEecC-----------------cCCCCCCCHHHHHHHH
Confidence 3445678888876 7889999999876554
No 103
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=26.93 E-value=49 Score=24.55 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=14.9
Q ss_pred ccCCCCChHHHHHHHHHH
Q 029260 94 RLRPGESDIYGLKRKLTR 111 (196)
Q Consensus 94 rl~~gE~~~e~LkReL~E 111 (196)
.++.|++++|||.|++.-
T Consensus 51 ~Ceg~~~eEECL~RRtL~ 68 (81)
T PF06404_consen 51 SCEGGEGEEECLMRRTLA 68 (81)
T ss_pred cccCCCCchHHHHHHHHH
Confidence 677779999999998753
No 104
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=25.44 E-value=37 Score=26.37 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=21.0
Q ss_pred CeeEEEEEEEEecCCCCeEEEEEecCCeeecCCcccCCCCChHHHH--HHHHHHHhCC
Q 029260 60 LRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGL--KRKLTRKLSL 115 (196)
Q Consensus 60 mRrsV~aVilvh~~~~phVLLlq~~~~~~~LPGGrl~~gE~~~e~L--kReL~EeLg~ 115 (196)
++..+.+||++|.| |+|..+|.+.+++.- .++..+.+|+
T Consensus 61 l~~~A~~vIl~HNH-----------------PsG~~~PS~~D~~~T~~L~~~~~~l~I 101 (123)
T PF04002_consen 61 LRLNASSVILAHNH-----------------PSGDPEPSDADIALTRRLKKAARLLGI 101 (123)
T ss_dssp HHTT-SEEEEEEE------------------TTS--S--HHHHHHHHHHHHHHHHHT-
T ss_pred HhhCCceEEEEEEc-----------------CCCCCCCCHhHHHHHHHHHHHHHHcCC
Confidence 44567889999987 789999988886533 2233445555
No 105
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=24.98 E-value=1.5e+02 Score=26.46 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=18.8
Q ss_pred EEEEEEEEecCCCCeEEEEEecC-----CeeecCCc
Q 029260 63 CVEAVLLVELFKHPHLLLLQVRN-----SIFKLPGG 93 (196)
Q Consensus 63 sV~aVilvh~~~~phVLLlq~~~-----~~~~LPGG 93 (196)
.+.++++.+ +...+|+.|+++ |.|.||+.
T Consensus 228 ~~~~~~~~~--~~~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 228 TTYFLVLQN--YDGEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred EEEEEEEEe--CCCeEEEEeCCCCchhhccccCCCC
Confidence 334444433 234799988863 78999984
No 106
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=22.11 E-value=1.4e+02 Score=27.04 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=33.0
Q ss_pred CeEEEEEec---CCeeecCCccc-CCCCChHHHHHHHHHHHhCC
Q 029260 76 PHLLLLQVR---NSIFKLPGGRL-RPGESDIYGLKRKLTRKLSL 115 (196)
Q Consensus 76 phVLLlq~~---~~~~~LPGGrl-~~gE~~~e~LkReL~EeLg~ 115 (196)
.=+||+++. .+.|.||.+.. +++++-..+..|.|....|-
T Consensus 139 ~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge 182 (263)
T KOG4548|consen 139 KLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGE 182 (263)
T ss_pred eEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcc
Confidence 457777743 58999999999 99999999999999887764
No 107
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.83 E-value=75 Score=22.66 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=21.3
Q ss_pred CeeecCCcccCCCCChHHHHHHHHHHHhC
Q 029260 86 SIFKLPGGRLRPGESDIYGLKRKLTRKLS 114 (196)
Q Consensus 86 ~~~~LPGGrl~~gE~~~e~LkReL~EeLg 114 (196)
.-|-+|||++-..--..+-+..++.+...
T Consensus 22 ~GWl~Pgg~vi~NPlkAqR~AE~~n~~~~ 50 (60)
T PF07026_consen 22 NGWLMPGGKVITNPLKAQRLAEELNSKQV 50 (60)
T ss_pred ceeecCCCeeEcCHHHHHHHHHHHHhhHh
Confidence 35999999998876666666666666554
Done!