Your job contains 1 sequence.
>029263
MELPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRY
VEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG
KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL
FPSSHEEMDEALSRGR
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029263
(196 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2156897 - symbol:AT5G66010 species:3702 "Arabi... 450 1.5e-42 1
UNIPROTKB|D6RBM0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 183 1.8e-22 2
UNIPROTKB|P52597 - symbol:HNRNPF "Heterogeneous nuclear r... 191 3.6e-22 2
UNIPROTKB|Q60HC3 - symbol:HNRNPF "Heterogeneous nuclear r... 191 3.6e-22 2
UNIPROTKB|Q5E9J1 - symbol:HNRNPF "Heterogeneous nuclear r... 190 9.2e-22 2
MGI|MGI:2138741 - symbol:Hnrnpf "heterogeneous nuclear ri... 190 9.3e-22 2
RGD|620366 - symbol:Hnrnpf "heterogeneous nuclear ribonuc... 190 9.3e-22 2
UNIPROTKB|E2RB90 - symbol:HNRNPF "Uncharacterized protein... 191 2.4e-21 2
UNIPROTKB|I3L816 - symbol:HNRNPH1 "Uncharacterized protei... 183 4.7e-21 2
UNIPROTKB|E9PCY7 - symbol:HNRNPH1 "Heterogeneous nuclear ... 183 5.0e-21 2
UNIPROTKB|E2R8D6 - symbol:E2R8D6 "Uncharacterized protein... 183 5.6e-21 2
UNIPROTKB|P31943 - symbol:HNRNPH1 "Heterogeneous nuclear ... 183 6.2e-21 2
UNIPROTKB|F2Z5H9 - symbol:HNRNPH1 "Uncharacterized protei... 183 6.2e-21 2
MGI|MGI:1891925 - symbol:Hnrnph1 "heterogeneous nuclear r... 183 6.2e-21 2
UNIPROTKB|G3V9Q3 - symbol:Hnrph1 "Heterogeneous nuclear r... 183 6.2e-21 2
UNIPROTKB|E1BF20 - symbol:HNRNPH1 "Uncharacterized protei... 183 7.6e-21 2
UNIPROTKB|G8JLB6 - symbol:HNRNPH1 "Heterogeneous nuclear ... 183 7.6e-21 2
UNIPROTKB|H0YB39 - symbol:HNRNPH1 "Heterogeneous nuclear ... 174 7.8e-21 2
UNIPROTKB|F1Q0B7 - symbol:GRSF1 "Uncharacterized protein"... 173 8.1e-21 2
UNIPROTKB|F1NBV8 - symbol:HNRNPH1 "Uncharacterized protei... 183 9.0e-21 2
UNIPROTKB|F1NJJ4 - symbol:HNRNPH1 "Uncharacterized protei... 183 9.6e-21 2
UNIPROTKB|F1NJJ5 - symbol:HNRNPH1 "Uncharacterized protei... 183 1.1e-20 2
UNIPROTKB|F1NEG6 - symbol:HNRNPH1 "Uncharacterized protei... 183 1.1e-20 2
UNIPROTKB|P55795 - symbol:HNRNPH2 "Heterogeneous nuclear ... 188 1.3e-20 2
MGI|MGI:1201779 - symbol:Hnrnph2 "heterogeneous nuclear r... 180 1.3e-20 2
RGD|1549784 - symbol:Hnrnph2 "heterogeneous nuclear ribon... 180 1.3e-20 2
UNIPROTKB|A5D9B4 - symbol:HNRPH2 "Heterogeneous nuclear r... 185 1.7e-20 2
UNIPROTKB|Q3SZF3 - symbol:HNRNPH2 "Heterogeneous nuclear ... 185 1.7e-20 2
UNIPROTKB|E2RJH5 - symbol:HNRNPH2 "Uncharacterized protei... 185 1.7e-20 2
RGD|620840 - symbol:Hnrph1 "heterogeneous nuclear ribonuc... 182 1.7e-20 2
UNIPROTKB|Q8VHV7 - symbol:Hnrnph1 "Heterogeneous nuclear ... 182 1.7e-20 2
UNIPROTKB|I3L687 - symbol:HNRNPH2 "Uncharacterized protei... 185 2.5e-20 2
UNIPROTKB|F5H5I6 - symbol:GRSF1 "G-rich sequence factor 1... 173 2.9e-20 2
UNIPROTKB|F1RG16 - symbol:HNRNPF "Uncharacterized protein... 191 3.5e-20 2
UNIPROTKB|H0Y8R1 - symbol:GRSF1 "G-rich sequence factor 1... 173 5.5e-20 2
UNIPROTKB|A6QPB2 - symbol:GRSF1 "Uncharacterized protein"... 173 6.0e-20 2
UNIPROTKB|H0YAK1 - symbol:GRSF1 "G-rich sequence factor 1... 173 7.5e-20 2
UNIPROTKB|Q12849 - symbol:GRSF1 "G-rich sequence factor 1... 173 9.3e-20 2
UNIPROTKB|F1MZF0 - symbol:GRSF1 "Uncharacterized protein"... 173 9.3e-20 2
ZFIN|ZDB-GENE-030131-275 - symbol:hnrnph1l "heterogeneous... 192 9.3e-20 2
ZFIN|ZDB-GENE-060421-3878 - symbol:zgc:136953 "zgc:136953... 203 1.5e-19 2
UNIPROTKB|F1RUP2 - symbol:GRSF1 "Uncharacterized protein"... 173 1.9e-19 2
UNIPROTKB|F1LRK4 - symbol:Grsf1 "Protein Grsf1" species:1... 171 2.8e-19 2
UNIPROTKB|Q5F3D2 - symbol:HNRNPH3 "Uncharacterized protei... 189 6.9e-19 2
UNIPROTKB|F1LMB8 - symbol:Grsf1 "Protein Grsf1" species:1... 171 8.5e-19 2
ZFIN|ZDB-GENE-040426-1856 - symbol:hnrnph1 "heterogeneous... 210 1.1e-18 2
MGI|MGI:106479 - symbol:Grsf1 "G-rich RNA sequence bindin... 174 1.8e-18 2
UNIPROTKB|F1LV61 - symbol:F1LV61 "Uncharacterized protein... 155 2.6e-18 2
RGD|1310855 - symbol:Esrp2 "epithelial splicing regulator... 230 3.8e-18 1
UNIPROTKB|G3V8M2 - symbol:Esrp2 "Epithelial-splicing regu... 230 3.8e-18 1
MGI|MGI:1924661 - symbol:Esrp2 "epithelial splicing regul... 224 1.7e-17 1
ZFIN|ZDB-GENE-060825-196 - symbol:grsf1 "G-rich RNA seque... 202 2.1e-17 2
UNIPROTKB|F1PA85 - symbol:ESRP2 "Uncharacterized protein"... 223 2.1e-17 1
UNIPROTKB|F1MSN9 - symbol:ESRP2 "Uncharacterized protein"... 223 2.1e-17 1
UNIPROTKB|J9NZV3 - symbol:RBM12 "Uncharacterized protein"... 224 2.4e-17 1
UNIPROTKB|F1P982 - symbol:RBM12 "Uncharacterized protein"... 224 2.6e-17 1
UNIPROTKB|I3LLW0 - symbol:RBM12 "Uncharacterized protein"... 224 2.6e-17 1
UNIPROTKB|Q9H6T0 - symbol:ESRP2 "Epithelial splicing regu... 222 2.8e-17 1
MGI|MGI:1922960 - symbol:Rbm12 "RNA binding motif protein... 223 3.6e-17 1
UNIPROTKB|D4A116 - symbol:Rbm12 "Protein Rbm12" species:1... 223 3.6e-17 1
RGD|1594333 - symbol:Rbm12 "RNA binding motif protein 12"... 223 3.8e-17 1
UNIPROTKB|F1MND5 - symbol:RBM12 "Uncharacterized protein"... 222 4.3e-17 1
UNIPROTKB|D6RIU0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 4.8e-17 2
UNIPROTKB|Q9NTZ6 - symbol:RBM12 "RNA-binding protein 12" ... 221 5.3e-17 1
UNIPROTKB|Q5ZLR4 - symbol:ESRP2 "Epithelial splicing regu... 219 5.6e-17 1
UNIPROTKB|D6RFM3 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 7.7e-17 2
UNIPROTKB|F1PQY5 - symbol:ESRP1 "Uncharacterized protein"... 213 1.4e-16 1
UNIPROTKB|Q6DEZ7 - symbol:esrp1 "Epithelial splicing regu... 214 1.8e-16 1
UNIPROTKB|Q7ZY29 - symbol:esrp1 "Epithelial splicing regu... 214 1.8e-16 1
UNIPROTKB|F1PSN8 - symbol:ESRP1 "Uncharacterized protein"... 213 2.0e-16 1
UNIPROTKB|F1P509 - symbol:ESRP1 "Uncharacterized protein"... 211 2.3e-16 1
UNIPROTKB|F1MVN3 - symbol:ESRP1 "Uncharacterized protein"... 213 2.3e-16 1
RGD|1560481 - symbol:Esrp1 "epithelial splicing regulator... 213 2.3e-16 1
UNIPROTKB|G3N1Y9 - symbol:G3N1Y9 "Uncharacterized protein... 156 2.3e-16 2
UNIPROTKB|F1LP81 - symbol:Esrp1 "Epithelial-splicing regu... 213 2.3e-16 1
UNIPROTKB|F1RY52 - symbol:ESRP1 "Uncharacterized protein"... 213 2.5e-16 1
ZFIN|ZDB-GENE-081022-16 - symbol:rbm12 "RNA binding motif... 214 2.7e-16 1
UNIPROTKB|H0YBR2 - symbol:ESRP1 "Epithelial-splicing regu... 209 3.4e-16 1
UNIPROTKB|H0YBB3 - symbol:ESRP1 "Epithelial-splicing regu... 209 3.8e-16 1
MGI|MGI:1917326 - symbol:Esrp1 "epithelial splicing regul... 211 3.8e-16 1
UNIPROTKB|E1BMP6 - symbol:E1BMP6 "Uncharacterized protein... 162 4.6e-16 2
UNIPROTKB|Q6NXG1 - symbol:ESRP1 "Epithelial splicing regu... 209 6.3e-16 1
WB|WBGene00020936 - symbol:hrpf-1 species:6239 "Caenorhab... 207 6.9e-16 1
ZFIN|ZDB-GENE-030131-9824 - symbol:esrp2 "epithelial spli... 205 1.9e-15 1
UNIPROTKB|I3LFQ0 - symbol:HNRNPH3 "Uncharacterized protei... 192 3.3e-15 1
UNIPROTKB|F1NNR6 - symbol:LOC100858337 "Uncharacterized p... 203 4.0e-15 1
WB|WBGene00006367 - symbol:sym-2 species:6239 "Caenorhabd... 200 4.9e-15 1
FB|FBgn0023441 - symbol:fus "fusilli" species:7227 "Droso... 200 5.9e-15 2
ZFIN|ZDB-GENE-070112-1732 - symbol:esrp1 "epithelial spli... 199 8.0e-15 1
UNIPROTKB|E1BB17 - symbol:HNRNPH3 "Uncharacterized protei... 192 8.5e-15 1
UNIPROTKB|F1P8D3 - symbol:HNRNPH3 "Uncharacterized protei... 192 8.5e-15 1
UNIPROTKB|P31942 - symbol:HNRNPH3 "Heterogeneous nuclear ... 192 8.5e-15 1
RGD|1310019 - symbol:Hnrnph3 "heterogeneous nuclear ribon... 192 8.5e-15 1
UNIPROTKB|E5RGV0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 183 3.0e-14 1
UNIPROTKB|D6R9T0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 3.8e-14 1
UNIPROTKB|D6RDU3 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 3.8e-14 1
UNIPROTKB|D6RIH9 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 3.8e-14 1
UNIPROTKB|D6RJ04 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 3.8e-14 1
UNIPROTKB|D6RIT2 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 3.8e-14 1
UNIPROTKB|D6RAM1 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 3.8e-14 1
WARNING: Descriptions of 55 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2156897 [details] [associations]
symbol:AT5G66010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K12898
IPI:IPI00541506 RefSeq:NP_201402.3 UniGene:At.28214
ProteinModelPortal:F4JZ11 SMR:F4JZ11 EnsemblPlants:AT5G66010.1
GeneID:836731 KEGG:ath:AT5G66010 OMA:YEVGSKR Uniprot:F4JZ11
Length = 255
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 89/184 (48%), Positives = 123/184 (66%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
++IVDVL V KN KF+GEAF V P+QV+ ALQR+R NMGRRYVEVFR +Q+YY A+A
Sbjct: 72 LNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVA 131
Query: 77 NEVS----DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
E +VR P RAK E K+ +T +L++RGLP+S K I++FF +
Sbjct: 132 AEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYK 190
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+ + + + DG+ TGEAFVEF E+++ AMAKD+M++GSRY+ELFP++ EE A
Sbjct: 191 VIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELFPTTREEARRAE 250
Query: 193 SRGR 196
+R R
Sbjct: 251 ARSR 254
Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI +FF + D + ++ N G+ +GEAFV FA + A+ +
Sbjct: 50 VVRLRGLPFNCADIDIFEFFAGLNIV-DVLLVSKN--GKFSGEAFVVFAGPMQVEIALQR 106
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F S ++ A++
Sbjct: 107 DRHNMGRRYVEVFRCSKQDYYNAVA 131
>UNIPROTKB|D6RBM0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HOGENOM:HOG000220896 HGNC:HGNC:5041
ChiTaRS:HNRNPH1 IPI:IPI00964535 ProteinModelPortal:D6RBM0
SMR:D6RBM0 Ensembl:ENST00000505811 ArrayExpress:D6RBM0 Bgee:D6RBM0
Uniprot:D6RBM0
Length = 212
Score = 183 (69.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 92 (37.4 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
>UNIPROTKB|P52597 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043484 "regulation of RNA splicing" evidence=IDA;IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC;TAS] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0043484 GO:GO:0000398 GO:GO:0071013
EMBL:CH471160 EMBL:AL512654 HOGENOM:HOG000220896 HOVERGEN:HBG055557
HPA:HPA001359 HPA:HPA016884 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD EMBL:L28010 EMBL:AK001364 EMBL:BC001432 EMBL:BC004254
EMBL:BC015580 EMBL:BC016736 EMBL:BC106008 IPI:IPI00003881
PIR:S43484 RefSeq:NP_001091674.1 RefSeq:NP_001091675.1
RefSeq:NP_001091676.1 RefSeq:NP_001091677.1 RefSeq:NP_001091678.1
RefSeq:NP_004957.1 UniGene:Hs.712955 UniGene:Hs.808 PDB:2HGL
PDB:2HGM PDB:2HGN PDB:2KFY PDB:2KG0 PDB:2KG1 PDB:3TFY PDBsum:2HGL
PDBsum:2HGM PDBsum:2HGN PDBsum:2KFY PDBsum:2KG0 PDBsum:2KG1
PDBsum:3TFY ProteinModelPortal:P52597 SMR:P52597 IntAct:P52597
MINT:MINT-1157890 STRING:P52597 PhosphoSite:P52597 DMDM:1710628
OGP:P52597 PaxDb:P52597 PeptideAtlas:P52597 PRIDE:P52597 DNASU:3185
Ensembl:ENST00000337970 Ensembl:ENST00000356053
Ensembl:ENST00000357065 Ensembl:ENST00000443950
Ensembl:ENST00000544000 GeneID:3185 KEGG:hsa:3185 UCSC:uc001jar.2
GeneCards:GC10M043881 HGNC:HGNC:5039 MIM:601037 neXtProt:NX_P52597
PharmGKB:PA162391271 InParanoid:P52597 PhylomeDB:P52597
ChiTaRS:HNRNPF EvolutionaryTrace:P52597 GenomeRNAi:3185
NextBio:12654 ArrayExpress:P52597 Bgee:P52597 CleanEx:HS_HNRNPF
Genevestigator:P52597 GermOnline:ENSG00000169813 Uniprot:P52597
Length = 415
Score = 191 (72.3 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 53/155 (34%), Positives = 81/155 (52%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-- 98
V F R + G +VE+ + A+ + R HR I KSH D
Sbjct: 43 VHFIYTREGRQSGEAFVEL--GSEDDVKMALKKD----RESMGHRYIEVFKSHRTEMDWV 96
Query: 99 ---EGKDSA--VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
G +SA + G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAF
Sbjct: 97 LKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAF 156
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 157 VQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 183 (69.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 173 (66.0 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAA 344
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
Score = 113 (44.8 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QE 70
E
Sbjct: 91 TE 92
Score = 85 (35.0 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
V K TGEAF + AL ++++ +G RY+EVF+S ++E
Sbjct: 145 VDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
>UNIPROTKB|Q60HC3 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9541 "Macaca fascicularis" [GO:0003727 "single-stranded RNA
binding" evidence=ISS] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043484 HOVERGEN:HBG055557 InterPro:IPR012996 Pfam:PF08080
EMBL:AB125204 EMBL:AB168246 ProteinModelPortal:Q60HC3 SMR:Q60HC3
PRIDE:Q60HC3 Uniprot:Q60HC3
Length = 415
Score = 191 (72.3 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 53/155 (34%), Positives = 81/155 (52%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-- 98
V F R + G +VE+ + A+ + R HR I KSH D
Sbjct: 43 VHFIYTREGRQSGEAFVEL--GSEDDVKMALKKD----RESMGHRYIEVFKSHRTEMDWV 96
Query: 99 ---EGKDSA--VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
G +SA + G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAF
Sbjct: 97 LKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAF 156
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 157 VQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 183 (69.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 173 (66.0 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAA 344
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
Score = 113 (44.8 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QE 70
E
Sbjct: 91 TE 92
Score = 85 (35.0 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
V K TGEAF + AL ++++ +G RY+EVF+S ++E
Sbjct: 145 VDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
>UNIPROTKB|Q5E9J1 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0003727 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043484 HSSP:Q9Z2X1
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 EMBL:BT020929 EMBL:BC102955
IPI:IPI00685278 RefSeq:NP_001014860.1 UniGene:Bt.23170
ProteinModelPortal:Q5E9J1 SMR:Q5E9J1 STRING:Q5E9J1 PRIDE:Q5E9J1
Ensembl:ENSBTAT00000011658 GeneID:506917 KEGG:bta:506917 CTD:3185
eggNOG:NOG326351 InParanoid:Q5E9J1 OMA:SDCTIRD NextBio:20867801
Uniprot:Q5E9J1
Length = 414
Score = 190 (71.9 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 53/155 (34%), Positives = 83/155 (53%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-- 98
V F R + G +VE+ + ++ K + + G HR I KSH D
Sbjct: 43 VHFIYTREGRQSGEAFVEL---ESEDDVKLALKKDRESMG---HRYIEVFKSHRTEMDWV 96
Query: 99 ---EGKDSA--VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
G +SA + G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAF
Sbjct: 97 LKHSGPNSADTANDGFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAF 156
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 157 VQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 181 (68.8 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 173 (66.0 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAA 344
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
Score = 109 (43.4 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 90
Query: 69 QE 70
E
Sbjct: 91 TE 92
Score = 86 (35.3 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEVSDV 82
V K TGEAF + AL ++++ +G RY+EVF+S ++E Y + V
Sbjct: 145 VDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSV 204
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG 120
+ P+ A+ + A G+ R+R +SAG
Sbjct: 205 QRPGPYDRPGTARRYIGIVKQA---GLERMRSGAYSAG 239
>MGI|MGI:2138741 [details] [associations]
symbol:Hnrnpf "heterogeneous nuclear ribonucleoprotein F"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2138741
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0003727
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043484
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD ChiTaRS:HNRNPF EMBL:AK076478 EMBL:BC018185
EMBL:BC025481 EMBL:BC027003 EMBL:BC029163 EMBL:BC029764
EMBL:BC033483 EMBL:BC089313 IPI:IPI00226073 IPI:IPI00798511
RefSeq:NP_001159899.1 RefSeq:NP_001159900.1 RefSeq:NP_001159901.1
RefSeq:NP_001159902.1 RefSeq:NP_001159903.1 RefSeq:NP_001159904.1
RefSeq:NP_598595.1 UniGene:Mm.422979 UniGene:Mm.476420 PDB:2DB1
PDBsum:2DB1 ProteinModelPortal:Q9Z2X1 SMR:Q9Z2X1 IntAct:Q9Z2X1
STRING:Q9Z2X1 PhosphoSite:Q9Z2X1 REPRODUCTION-2DPAGE:Q9Z2X1
PaxDb:Q9Z2X1 PRIDE:Q9Z2X1 Ensembl:ENSMUST00000035493
Ensembl:ENSMUST00000163168 Ensembl:ENSMUST00000167182
Ensembl:ENSMUST00000167657 Ensembl:ENSMUST00000170346
Ensembl:ENSMUST00000180020 Ensembl:ENSMUST00000180341 GeneID:98758
KEGG:mmu:98758 UCSC:uc009dle.2 InParanoid:Q9Z2X1
EvolutionaryTrace:Q9Z2X1 NextBio:353639 Bgee:Q9Z2X1
Genevestigator:Q9Z2X1 GermOnline:ENSMUSG00000042079 Uniprot:Q9Z2X1
Length = 415
Score = 190 (71.9 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 53/155 (34%), Positives = 83/155 (53%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-- 98
V F R + G +VE+ + ++ K + + G HR I KSH D
Sbjct: 43 VHFIYTREGRQSGEAFVEL---ESEDDVKLALKKDRESMG---HRYIEVFKSHRTEMDWV 96
Query: 99 ---EGKDSA--VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
G +SA + G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAF
Sbjct: 97 LKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAF 156
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 157 VQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 180 (68.4 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 173 (66.0 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAA 344
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
Score = 109 (43.4 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 90
Query: 69 QE 70
E
Sbjct: 91 TE 92
Score = 85 (35.0 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
V K TGEAF + AL ++++ +G RY+EVF+S ++E
Sbjct: 145 VDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
>RGD|620366 [details] [associations]
symbol:Hnrnpf "heterogeneous nuclear ribonucleoprotein F"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0043484 "regulation of RNA splicing"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:620366 GO:GO:0005634 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043484 HSSP:Q9Z2X1 HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD EMBL:AB022209 EMBL:BC097275 EMBL:BC103634
IPI:IPI00210357 RefSeq:NP_001032362.1 RefSeq:NP_001032363.1
RefSeq:NP_001032364.1 RefSeq:NP_071792.1 UniGene:Rn.144596
ProteinModelPortal:Q794E4 SMR:Q794E4 IntAct:Q794E4 STRING:Q794E4
PhosphoSite:Q794E4 PRIDE:Q794E4 Ensembl:ENSRNOT00000019529
GeneID:64200 KEGG:rno:64200 UCSC:RGD:620366 InParanoid:Q794E4
NextBio:612884 Genevestigator:Q794E4 GermOnline:ENSRNOG00000014562
Uniprot:Q794E4
Length = 415
Score = 190 (71.9 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 53/155 (34%), Positives = 83/155 (53%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-- 98
V F R + G +VE+ + ++ K + + G HR I KSH D
Sbjct: 43 VHFIYTREGRQSGEAFVEL---ESEDDVKLALKKDRESMG---HRYIEVFKSHRTEMDWV 96
Query: 99 ---EGKDSA--VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
G +SA + G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAF
Sbjct: 97 LKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAF 156
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 157 VQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 180 (68.4 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 173 (66.0 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAA 344
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
Score = 109 (43.4 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 90
Query: 69 QE 70
E
Sbjct: 91 TE 92
Score = 85 (35.0 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
V K TGEAF + AL ++++ +G RY+EVF+S ++E
Sbjct: 145 VDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
>UNIPROTKB|E2RB90 [details] [associations]
symbol:HNRNPF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0000166
GO:GO:0003727 Gene3D:3.30.70.330 GO:GO:0043484 GO:GO:0071013
GeneTree:ENSGT00620000087736 KO:K12898 InterPro:IPR012996
Pfam:PF08080 CTD:3185 OMA:SDCTIRD EMBL:AAEX03015383
RefSeq:XP_848697.1 RefSeq:XP_856894.1 RefSeq:XP_856973.1
ProteinModelPortal:E2RB90 Ensembl:ENSCAFT00000011299 GeneID:477757
KEGG:cfa:477757 NextBio:20853178 Uniprot:E2RB90
Length = 414
Score = 191 (72.3 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 53/155 (34%), Positives = 81/155 (52%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-- 98
V F R + G +VE+ + A+ + R HR I KSH D
Sbjct: 43 VHFIYTREGRQSGEAFVEL--ESEDDVKMALKKD----RESMGHRYIEVFKSHRTEMDWV 96
Query: 99 ---EGKDSA--VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
G +SA + G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAF
Sbjct: 97 LKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAF 156
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 157 VQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 182 (69.1 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 173 (66.0 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAA 344
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
Score = 105 (42.0 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELESEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QE 70
E
Sbjct: 91 TE 92
Score = 86 (35.3 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEVSDV 82
V K TGEAF + AL ++++ +G RY+EVF+S ++E Y + V
Sbjct: 145 VDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSV 204
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG 120
+ P+ A+ + A G+ R+R +SAG
Sbjct: 205 QRPGPYDRPGTARRYIGIVKQA---GLERMRSGAYSAG 239
>UNIPROTKB|I3L816 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:CU915704
Ensembl:ENSSSCT00000031735 Uniprot:I3L816
Length = 423
Score = 183 (69.5 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 105 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 163
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 164 AEKALKKHKERIGHRYIEIFKSSRAEV 190
Score = 182 (69.1 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 11 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 71 KKDRETMGHRYVEVFKSNNVEMDWVL 96
Score = 174 (66.3 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 277 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 334
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 335 ATHEDAVAAMSKDKANMQHRYVELFLNS 362
Score = 92 (37.4 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 42 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 91
Score = 80 (33.2 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 151 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 189
>UNIPROTKB|E9PCY7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 IPI:IPI00908896
ProteinModelPortal:E9PCY7 SMR:E9PCY7 PRIDE:E9PCY7
Ensembl:ENST00000510411 ArrayExpress:E9PCY7 Bgee:E9PCY7
Uniprot:E9PCY7
Length = 429
Score = 183 (69.5 bits), Expect = 5.0e-21, Sum P(2) = 5.0e-21
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 5.0e-21, Sum P(2) = 5.0e-21
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 80 (33.2 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>UNIPROTKB|E2R8D6 [details] [associations]
symbol:E2R8D6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:AAEX03007686
Ensembl:ENSCAFT00000000520 Uniprot:E2R8D6
Length = 439
Score = 183 (69.5 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 80 (33.2 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>UNIPROTKB|P31943 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008266 "poly(U) RNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008266 GO:GO:0000166
GO:GO:0015629 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0043484
GO:GO:0000398 GO:GO:0071013 EMBL:CH471165 eggNOG:NOG262593
HOGENOM:HOG000220896 HOVERGEN:HBG055557 EMBL:L22009 EMBL:CR456778
EMBL:AK124530 EMBL:BC001348 IPI:IPI00013881 PIR:I39358
RefSeq:NP_001244222.1 RefSeq:NP_005511.1 UniGene:Hs.604001 PDB:2LXU
PDBsum:2LXU ProteinModelPortal:P31943 SMR:P31943 IntAct:P31943
MINT:MINT-1160934 STRING:P31943 PhosphoSite:P31943 DMDM:1710632
REPRODUCTION-2DPAGE:IPI00013881 REPRODUCTION-2DPAGE:P31943
PaxDb:P31943 PRIDE:P31943 Ensembl:ENST00000356731
Ensembl:ENST00000393432 Ensembl:ENST00000442819 GeneID:3187
KEGG:hsa:3187 UCSC:uc003mke.4 CTD:3187 GeneCards:GC05M179043
HGNC:HGNC:5041 HPA:HPA001359 HPA:HPA016884 MIM:601035
neXtProt:NX_P31943 PharmGKB:PA162391284 KO:K12898 OrthoDB:EOG4CRM03
ChiTaRS:HNRNPH1 GenomeRNAi:3187 NextBio:12670 ArrayExpress:P31943
Bgee:P31943 CleanEx:HS_HNRNPH1 Genevestigator:P31943
GermOnline:ENSG00000169045 InterPro:IPR012996 Pfam:PF08080
Uniprot:P31943
Length = 449
Score = 183 (69.5 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 80 (33.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>UNIPROTKB|F2Z5H9 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0015629
"actin cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0071013 GeneTree:ENSGT00620000087736 CTD:3187
KO:K12898 InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:CU915704
RefSeq:XP_003123691.1 UniGene:Ssc.13767 ProteinModelPortal:F2Z5H9
SMR:F2Z5H9 PRIDE:F2Z5H9 Ensembl:ENSSSCT00000015317 GeneID:100519535
KEGG:ssc:100519535 Uniprot:F2Z5H9
Length = 449
Score = 183 (69.5 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 80 (33.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>MGI|MGI:1891925 [details] [associations]
symbol:Hnrnph1 "heterogeneous nuclear ribonucleoprotein H1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891925 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 CTD:3187 KO:K12898 OrthoDB:EOG4CRM03
ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080 EMBL:Y14196
EMBL:BC056224 IPI:IPI00133916 RefSeq:NP_067485.1 UniGene:Mm.21740
ProteinModelPortal:O35737 SMR:O35737 IntAct:O35737 STRING:O35737
PhosphoSite:O35737 REPRODUCTION-2DPAGE:IPI00133916
REPRODUCTION-2DPAGE:O35737 PaxDb:O35737 PRIDE:O35737 DNASU:59013
Ensembl:ENSMUST00000069304 Ensembl:ENSMUST00000109142 GeneID:59013
KEGG:mmu:59013 NextBio:314564 Bgee:O35737 Genevestigator:O35737
GermOnline:ENSMUSG00000007850 Uniprot:O35737
Length = 449
Score = 183 (69.5 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 80 (33.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>UNIPROTKB|G3V9Q3 [details] [associations]
symbol:Hnrph1 "Heterogeneous nuclear ribonucleoprotein H1,
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0015629
"actin cytoskeleton" evidence=IEA] [GO:0043484 "regulation of RNA
splicing" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:620840 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:CH473948
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
UniGene:Rn.23677 ProteinModelPortal:G3V9Q3 SMR:G3V9Q3 PRIDE:G3V9Q3
Ensembl:ENSRNOT00000059190 Uniprot:G3V9Q3
Length = 449
Score = 183 (69.5 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 80 (33.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>UNIPROTKB|E1BF20 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:DAAA02018972
IPI:IPI00734138 Ensembl:ENSBTAT00000012357 Uniprot:E1BF20
Length = 472
Score = 183 (69.5 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 80 (33.2 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>UNIPROTKB|G8JLB6 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 ProteinModelPortal:G8JLB6
SMR:G8JLB6 PRIDE:G8JLB6 Ensembl:ENST00000329433 OMA:FSECKIQ
PhylomeDB:G8JLB6 Bgee:G8JLB6 Uniprot:G8JLB6
Length = 472
Score = 183 (69.5 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 80 (33.2 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>UNIPROTKB|H0YB39 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
PRIDE:H0YB39 Ensembl:ENST00000521173 Bgee:H0YB39 Uniprot:H0YB39
Length = 277
Score = 174 (66.3 bits), Expect = 7.8e-21, Sum P(2) = 7.8e-21
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 153 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 210
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 211 ATHEDAVAAMSKDKANMQHRYVELFLNS 238
Score = 121 (47.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+DF L + +S GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 7 EDFPLDVARKKLFSSSQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 66
Score = 87 (35.7 bits), Expect = 7.8e-21, Sum P(2) = 7.8e-21
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
LF + TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 18 LFSSSQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 65
>UNIPROTKB|F1Q0B7 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016331 "morphogenesis of embryonic
epithelium" evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 EMBL:AAEX03009136
Ensembl:ENSCAFT00000004672 OMA:GESEMAN Uniprot:F1Q0B7
Length = 281
Score = 173 (66.0 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 39/95 (41%), Positives = 56/95 (58%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAF 153
KS V+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+
Sbjct: 38 KSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAY 95
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 96 VQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 130
Score = 157 (60.3 bits), Expect = 8.1e-21, Sum P(2) = 8.1e-21
Identities = 40/89 (44%), Positives = 53/89 (59%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S+G+ TGEA V
Sbjct: 194 DFGATSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSNGKATGEADVH 247
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 248 FDTHEDAVAAMLKDRSHVHHRYIELFLNS 276
Score = 108 (43.1 bits), Expect = 8.1e-21, Sum P(2) = 8.1e-21
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 74 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 133
Query: 75 IANEVSDVRGGSP 87
+ + SP
Sbjct: 134 VGSHKGKKMASSP 146
Score = 59 (25.8 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQE 70
V AL+++R MG+RYVEV+ ++
Sbjct: 7 VQKALEKHRMYMGQRYVEVYEINNED 32
>UNIPROTKB|F1NBV8 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00589313
Ensembl:ENSGALT00000009575 ArrayExpress:F1NBV8 Uniprot:F1NBV8
Length = 492
Score = 183 (69.5 bits), Expect = 9.0e-21, Sum P(2) = 9.0e-21
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 136 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 194
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 195 AEKALKKHKERIGHRYIEIFKSSRAEV 221
Score = 180 (68.4 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 102 KKDRETMGHRYVEVFKSNNVEMDWVL 127
Score = 175 (66.7 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
Identities = 43/102 (42%), Positives = 58/102 (56%)
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
RG S HR + VH +RGLP+ A ++DI +FF L+ +HI +
Sbjct: 292 RGMSDHRYGDGTSTFQSTTGHCVH-----MRGLPYRATENDIYNFFSP--LNPVRVHIEI 344
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 345 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 386
Score = 92 (37.4 bits), Expect = 9.0e-21, Sum P(2) = 9.0e-21
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L V AL+++R+ MG RYVEVF+S E
Sbjct: 73 IRFIYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNNVE 122
Score = 80 (33.2 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 182 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 220
>UNIPROTKB|F1NJJ4 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00684493
Ensembl:ENSGALT00000034274 ArrayExpress:F1NJJ4 Uniprot:F1NJJ4
Length = 499
Score = 183 (69.5 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 136 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 194
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 195 AEKALKKHKERIGHRYIEIFKSSRAEV 221
Score = 180 (68.4 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 102 KKDRETMGHRYVEVFKSNNVEMDWVL 127
Score = 172 (65.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AA
Sbjct: 317 TGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAA 374
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+KD+ + RY+ELF +S
Sbjct: 375 MSKDKANMQHRYVELFLNS 393
Score = 92 (37.4 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L V AL+++R+ MG RYVEVF+S E
Sbjct: 73 IRFIYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNNVE 122
Score = 80 (33.2 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 182 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 220
>UNIPROTKB|F1NJJ5 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00679403
Ensembl:ENSGALT00000034273 ArrayExpress:F1NJJ5 Uniprot:F1NJJ5
Length = 519
Score = 183 (69.5 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 156 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 214
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 215 AEKALKKHKERIGHRYIEIFKSSRAEV 241
Score = 180 (68.4 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 121
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 122 KKDRETMGHRYVEVFKSNNVEMDWVL 147
Score = 172 (65.6 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AA
Sbjct: 337 TGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAA 394
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+KD+ + RY+ELF +S
Sbjct: 395 MSKDKANMQHRYVELFLNS 413
Score = 92 (37.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L V AL+++R+ MG RYVEVF+S E
Sbjct: 93 IRFIYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNNVE 142
Score = 80 (33.2 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 202 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 240
>UNIPROTKB|F1NEG6 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:AADN02028603
EMBL:AADN02028604 EMBL:AADN02028605 EMBL:AADN02028590
EMBL:AADN02028591 EMBL:AADN02028592 EMBL:AADN02028593
EMBL:AADN02028594 EMBL:AADN02028595 EMBL:AADN02028596
EMBL:AADN02028597 EMBL:AADN02028598 EMBL:AADN02028599
EMBL:AADN02028600 EMBL:AADN02028601 EMBL:AADN02028602
IPI:IPI00823306 Ensembl:ENSGALT00000040330 ArrayExpress:F1NEG6
Uniprot:F1NEG6
Length = 521
Score = 183 (69.5 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 156 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 214
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 215 AEKALKKHKERIGHRYIEIFKSSRAEV 241
Score = 180 (68.4 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 121
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 122 KKDRETMGHRYVEVFKSNNVEMDWVL 147
Score = 172 (65.6 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AA
Sbjct: 339 TGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAA 396
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+KD+ + RY+ELF +S
Sbjct: 397 MSKDKANMQHRYVELFLNS 415
Score = 92 (37.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L V AL+++R+ MG RYVEVF+S E
Sbjct: 93 IRFIYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNNVE 142
Score = 80 (33.2 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 202 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 240
>UNIPROTKB|P55795 [details] [associations]
symbol:HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0015629 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:U78027 EMBL:AL035422 GO:GO:0000398
EMBL:CH471115 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 HPA:HPA001359 HPA:HPA016884 KO:K12898
OrthoDB:EOG4CRM03 InterPro:IPR012996 Pfam:PF08080 CTD:3188
EMBL:U01923 EMBL:BC130343 EMBL:BC130345 IPI:IPI00026230
RefSeq:NP_001027565.1 RefSeq:NP_062543.1 UniGene:Hs.432485 PDB:1WEZ
PDB:1WG5 PDBsum:1WEZ PDBsum:1WG5 ProteinModelPortal:P55795
SMR:P55795 IntAct:P55795 MINT:MINT-2804293 STRING:P55795
PhosphoSite:P55795 DMDM:2500576 REPRODUCTION-2DPAGE:IPI00026230
PaxDb:P55795 PeptideAtlas:P55795 PRIDE:P55795 DNASU:3188
Ensembl:ENST00000316594 GeneID:3188 KEGG:hsa:3188 UCSC:uc004ehm.3
GeneCards:GC0XP100663 HGNC:HGNC:5042 HPA:CAB004436 MIM:300610
neXtProt:NX_P55795 PharmGKB:PA162391316 InParanoid:P55795
OMA:MEANMTI PhylomeDB:P55795 EvolutionaryTrace:P55795
GenomeRNAi:3188 NextBio:12674 ArrayExpress:P55795 Bgee:P55795
CleanEx:HS_HNRNPH2 Genevestigator:P55795 GermOnline:ENSG00000126945
Uniprot:P55795
Length = 449
Score = 188 (71.2 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 37/86 (43%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 180 (68.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 178 (67.7 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVE 92
Score = 80 (33.2 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>MGI|MGI:1201779 [details] [associations]
symbol:Hnrnph2 "heterogeneous nuclear ribonucleoprotein H2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1201779
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 EMBL:U58105 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 GeneTree:ENSGT00620000087736 KO:K12898
OrthoDB:EOG4CRM03 InterPro:IPR012996 Pfam:PF08080 CTD:3188
EMBL:AK077716 EMBL:AK164115 EMBL:AK168116 EMBL:AK169104
EMBL:BC005461 IPI:IPI00108143 RefSeq:NP_063921.1 UniGene:Mm.315909
ProteinModelPortal:P70333 SMR:P70333 STRING:P70333
PhosphoSite:P70333 PaxDb:P70333 PRIDE:P70333 DNASU:56258
Ensembl:ENSMUST00000050331 Ensembl:ENSMUST00000059297
Ensembl:ENSMUST00000074950 Ensembl:ENSMUST00000113202
Ensembl:ENSMUST00000113203 GeneID:56258 KEGG:mmu:56258
InParanoid:P70333 NextBio:312148 Bgee:P70333 Genevestigator:P70333
GermOnline:ENSMUSG00000045427 Uniprot:P70333
Length = 449
Score = 180 (68.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 180 (68.4 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 178 (67.7 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
V F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 VRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVE 92
Score = 80 (33.2 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>RGD|1549784 [details] [associations]
symbol:Hnrnph2 "heterogeneous nuclear ribonucleoprotein H2 (H')"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0015629 "actin
cytoskeleton" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:1549784 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0015629
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG262593
HSSP:P55795 HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3188 OMA:MEANMTI EMBL:BC079240
IPI:IPI00464512 RefSeq:NP_001014041.1 UniGene:Rn.229731
ProteinModelPortal:Q6AY09 SMR:Q6AY09 IntAct:Q6AY09 STRING:Q6AY09
PhosphoSite:Q6AY09 PRIDE:Q6AY09 Ensembl:ENSRNOT00000015518
GeneID:308650 KEGG:rno:308650 UCSC:RGD:1549784 InParanoid:Q6AY09
NextBio:659306 Genevestigator:Q6AY09 Uniprot:Q6AY09
Length = 449
Score = 180 (68.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 180 (68.4 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 178 (67.7 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
V F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 VRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVE 92
Score = 80 (33.2 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>UNIPROTKB|A5D9B4 [details] [associations]
symbol:HNRPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 eggNOG:NOG262593 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 IPI:IPI00696405 UniGene:Bt.8355 OMA:MEANMTI
EMBL:DAAA02070773 EMBL:DAAA02070774 EMBL:BT030533 SMR:A5D9B4
Ensembl:ENSBTAT00000009864 InParanoid:A5D9B4 Uniprot:A5D9B4
Length = 449
Score = 185 (70.2 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 180 (68.4 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 178 (67.7 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
Score = 91 (37.1 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVE 92
Score = 80 (33.2 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>UNIPROTKB|Q3SZF3 [details] [associations]
symbol:HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9913 "Bos taurus" [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 EMBL:BC102894 IPI:IPI00696405 RefSeq:NP_001069476.1
UniGene:Bt.8355 ProteinModelPortal:Q3SZF3 SMR:Q3SZF3 PRIDE:Q3SZF3
GeneID:534001 KEGG:bta:534001 CTD:3188 InParanoid:Q3SZF3
NextBio:20876226 Uniprot:Q3SZF3
Length = 449
Score = 185 (70.2 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 180 (68.4 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 178 (67.7 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
Score = 91 (37.1 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVE 92
Score = 80 (33.2 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>UNIPROTKB|E2RJH5 [details] [associations]
symbol:HNRNPH2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GeneTree:ENSGT00620000087736 KO:K12898
InterPro:IPR012996 Pfam:PF08080 CTD:3188 OMA:MEANMTI
EMBL:AAEX03026717 RefSeq:XP_861916.1 RefSeq:XP_862053.2
Ensembl:ENSCAFT00000028063 GeneID:480989 KEGG:cfa:480989
Uniprot:E2RJH5
Length = 449
Score = 185 (70.2 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 180 (68.4 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 178 (67.7 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
Score = 91 (37.1 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVE 92
Score = 80 (33.2 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>RGD|620840 [details] [associations]
symbol:Hnrph1 "heterogeneous nuclear ribonucleoprotein H1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:620840 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006396 GO:GO:0043484
eggNOG:NOG262593 HSSP:P55795 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 InterPro:IPR012996 Pfam:PF08080
EMBL:AF367468 EMBL:AABR03073723 EMBL:BC129087 IPI:IPI00202027
IPI:IPI00851133 IPI:IPI00851145 RefSeq:NP_543172.1 UniGene:Rn.23677
ProteinModelPortal:Q8VHV7 SMR:Q8VHV7 IntAct:Q8VHV7 STRING:Q8VHV7
PhosphoSite:Q8VHV7 World-2DPAGE:0004:Q8VHV7 PRIDE:Q8VHV7
GeneID:140931 KEGG:rno:140931 UCSC:RGD:620840 CTD:140931
NextBio:620799 ArrayExpress:Q8VHV7 Genevestigator:Q8VHV7
Uniprot:Q8VHV7
Length = 449
Score = 182 (69.1 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 179 (68.1 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF +++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 172 (65.6 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 40/88 (45%), Positives = 54/88 (61%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIETGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 80 (33.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>UNIPROTKB|Q8VHV7 [details] [associations]
symbol:Hnrnph1 "Heterogeneous nuclear ribonucleoprotein H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:620840 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0006396 GO:GO:0043484 eggNOG:NOG262593 HSSP:P55795
HOGENOM:HOG000220896 HOVERGEN:HBG055557 KO:K12898
InterPro:IPR012996 Pfam:PF08080 EMBL:AF367468 EMBL:AABR03073723
EMBL:BC129087 IPI:IPI00202027 IPI:IPI00851133 IPI:IPI00851145
RefSeq:NP_543172.1 UniGene:Rn.23677 ProteinModelPortal:Q8VHV7
SMR:Q8VHV7 IntAct:Q8VHV7 STRING:Q8VHV7 PhosphoSite:Q8VHV7
World-2DPAGE:0004:Q8VHV7 PRIDE:Q8VHV7 GeneID:140931 KEGG:rno:140931
UCSC:RGD:620840 CTD:140931 NextBio:620799 ArrayExpress:Q8VHV7
Genevestigator:Q8VHV7 Uniprot:Q8VHV7
Length = 449
Score = 182 (69.1 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 179 (68.1 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF +++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 172 (65.6 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 40/88 (45%), Positives = 54/88 (61%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIETGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
Score = 92 (37.4 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 80 (33.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 152 TGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
>UNIPROTKB|I3L687 [details] [associations]
symbol:HNRNPH2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0015629 "actin cytoskeleton" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:MEANMTI
Ensembl:ENSSSCT00000030700 Uniprot:I3L687
Length = 437
Score = 185 (70.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 178 (67.7 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 266 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 323
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 324 ATHEDAVAAMAKDKANMQHRYVELFLNS 351
Score = 133 (51.9 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + I N EAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFS-------GLEIVPNGX-----EAFVQFASQEI 152
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 153 AEKALKKHKERIGHRYIEIFKSSRAEV 179
Score = 91 (37.1 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVE 92
Score = 69 (29.3 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 34 EAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
EAF + AL+++++ +G RY+E+F+S R E
Sbjct: 142 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 178
>UNIPROTKB|F5H5I6 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
IPI:IPI00979483 ProteinModelPortal:F5H5I6 SMR:F5H5I6 PRIDE:F5H5I6
Ensembl:ENST00000545193 UCSC:uc011caz.1 ArrayExpress:F5H5I6
Bgee:F5H5I6 Uniprot:F5H5I6
Length = 362
Score = 173 (66.0 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 39/95 (41%), Positives = 56/95 (58%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAF 153
KS V+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+
Sbjct: 119 KSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAY 176
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 177 VQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 168 (64.2 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 29/83 (34%), Positives = 55/83 (66%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
Score = 158 (60.7 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 42/96 (43%), Positives = 55/96 (57%)
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRP 148
+P A D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 270 LPEAA--DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKA 321
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 322 TGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 108 (43.1 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE---- 210
Query: 75 IANEVSDVRGGSPHRSIPRAK 95
+ V +G S P AK
Sbjct: 211 VRTHVGSYKG-KKIASFPTAK 230
Score = 69 (29.3 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++++ K G+A + V AL+++R MG+RYVEV+ ++
Sbjct: 68 LNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 113
>UNIPROTKB|F1RG16 [details] [associations]
symbol:HNRNPF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
KO:K12898 InterPro:IPR012996 Pfam:PF08080 CTD:3185 OMA:SDCTIRD
EMBL:CU468599 RefSeq:XP_001929089.1 RefSeq:XP_003359253.1
RefSeq:XP_003483523.1 UniGene:Ssc.93755 Ensembl:ENSSSCT00000011169
GeneID:100155475 KEGG:ssc:100155475 Uniprot:F1RG16
Length = 414
Score = 191 (72.3 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 53/155 (34%), Positives = 81/155 (52%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-- 98
V F R + G +VE+ + A+ + R HR I KSH D
Sbjct: 43 VHFIYTREGRQSGEAFVEL--ESEDDVKMALKKD----RESMGHRYIEVFKSHRTEMDWV 96
Query: 99 ---EGKDSA--VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
G +SA + G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAF
Sbjct: 97 LKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAF 156
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 157 VQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 182 (69.1 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 170 (64.9 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA +++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHDEAVAA 344
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
Score = 97 (39.2 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTI V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIRD---GAAGVHFIYTREGRQSGEAFVELESEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QE 70
E
Sbjct: 91 TE 92
Score = 86 (35.3 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEVSDV 82
V K TGEAF + AL ++++ +G RY+EVF+S ++E Y + V
Sbjct: 145 VDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSV 204
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG 120
+ P+ A+ + A G+ R+R +SAG
Sbjct: 205 QRPGPYDRPGTARRYIGIVKQA---GLERMRSGAYSAG 239
>UNIPROTKB|H0Y8R1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
PRIDE:H0Y8R1 Ensembl:ENST00000514161 Bgee:H0Y8R1 Uniprot:H0Y8R1
Length = 417
Score = 173 (66.0 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 39/95 (41%), Positives = 56/95 (58%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAF 153
KS V+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+
Sbjct: 174 KSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAY 231
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 232 VQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 266
Score = 168 (64.2 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 29/83 (34%), Positives = 55/83 (66%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 88 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 147
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 148 EKHRMYMGQRYVEVYEINNEDVD 170
Score = 158 (60.7 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 42/96 (43%), Positives = 55/96 (57%)
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRP 148
+P A D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 325 LPEAA--DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKA 376
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 377 TGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 412
Score = 108 (43.1 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 210 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE---- 265
Query: 75 IANEVSDVRGGSPHRSIPRAK 95
+ V +G S P AK
Sbjct: 266 VRTHVGSYKG-KKIASFPTAK 285
Score = 69 (29.3 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++++ K G+A + V AL+++R MG+RYVEV+ ++
Sbjct: 123 LNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 168
>UNIPROTKB|A6QPB2 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000220896
HOVERGEN:HBG055557 OrthoDB:EOG4XPQGW GeneTree:ENSGT00620000087736
EMBL:DAAA02018025 EMBL:DAAA02018026 EMBL:BC149233 IPI:IPI00705255
UniGene:Bt.53639 SMR:A6QPB2 Ensembl:ENSBTAT00000039551
Uniprot:A6QPB2
Length = 362
Score = 173 (66.0 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 87 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNS 144
P +P +K +E D V+ ++R +GLP+S +D++ FF D + E+ IH +N
Sbjct: 15 PEYELPPSKLGEEVDD--VY--LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNR 70
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
DG+ G+A +E + +D + A+ K RM +G RY+E++ ++E++D
Sbjct: 71 DGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVD 115
Score = 172 (65.6 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 37/85 (43%), Positives = 54/85 (63%)
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSK 163
V+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E +
Sbjct: 129 VNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMAS 186
Query: 164 AAMAKDRMTLGSRYIELFPSSHEEM 188
A+ K R +G+RYIE+FPS E+
Sbjct: 187 QALLKHREEIGNRYIEIFPSRRNEV 211
Score = 158 (60.7 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 43/96 (44%), Positives = 55/96 (57%)
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRP 148
IP A D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 270 IPEAV--DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKA 321
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 322 TGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 105 (42.0 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 75 IANEVSDVRGGSP 87
+ + SP
Sbjct: 215 VGSHKGKKIASSP 227
Score = 69 (29.3 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++++ K G+A + V AL+++R MG+RYVEV+ ++
Sbjct: 68 LNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 113
>UNIPROTKB|H0YAK1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
OMA:LSFFSDC PRIDE:H0YAK1 Ensembl:ENST00000499044 Bgee:H0YAK1
Uniprot:H0YAK1
Length = 453
Score = 173 (66.0 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 39/95 (41%), Positives = 56/95 (58%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAF 153
KS V+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+
Sbjct: 210 KSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAY 267
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 268 VQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 302
Score = 168 (64.2 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 29/83 (34%), Positives = 55/83 (66%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 124 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 183
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 184 EKHRMYMGQRYVEVYEINNEDVD 206
Score = 158 (60.7 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
Identities = 42/96 (43%), Positives = 55/96 (57%)
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRP 148
+P A D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 361 LPEAA--DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKA 412
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 413 TGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 448
Score = 108 (43.1 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 246 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE---- 301
Query: 75 IANEVSDVRGGSPHRSIPRAK 95
+ V +G S P AK
Sbjct: 302 VRTHVGSYKG-KKIASFPTAK 321
Score = 69 (29.3 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++++ K G+A + V AL+++R MG+RYVEV+ ++
Sbjct: 159 LNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 204
>UNIPROTKB|Q12849 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0009952
"anterior/posterior pattern specification" evidence=IEA]
[GO:0016331 "morphogenesis of embryonic epithelium" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=TAS] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 GO:GO:0009952
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378 EMBL:CH471057
GO:GO:0016331 EMBL:U07231 EMBL:AK056891 EMBL:AK090755 EMBL:AK094806
EMBL:AK095799 EMBL:AK097055 EMBL:AK127161 EMBL:AC021989
EMBL:BC040485 IPI:IPI00478657 IPI:IPI00914953 PIR:S48081
RefSeq:NP_001091947.1 RefSeq:NP_002083.3 UniGene:Hs.309763 PDB:2LMI
PDBsum:2LMI ProteinModelPortal:Q12849 SMR:Q12849 IntAct:Q12849
STRING:Q12849 PhosphoSite:Q12849 DMDM:215274142 PaxDb:Q12849
PRIDE:Q12849 Ensembl:ENST00000254799 Ensembl:ENST00000439371
Ensembl:ENST00000502323 GeneID:2926 KEGG:hsa:2926 UCSC:uc003hfs.2
CTD:2926 GeneCards:GC04M071681 HGNC:HGNC:4610 HPA:HPA036985
MIM:604851 neXtProt:NX_Q12849 PharmGKB:PA29003 eggNOG:NOG319259
HOGENOM:HOG000220896 HOVERGEN:HBG055557 InParanoid:Q12849
OrthoDB:EOG4XPQGW ChiTaRS:GRSF1 GenomeRNAi:2926 NextBio:11601
ArrayExpress:Q12849 Bgee:Q12849 CleanEx:HS_GRSF1
Genevestigator:Q12849 GermOnline:ENSG00000132463 Uniprot:Q12849
Length = 480
Score = 173 (66.0 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 39/95 (41%), Positives = 56/95 (58%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAF 153
KS V+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+
Sbjct: 237 KSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAY 294
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 295 VQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 329
Score = 168 (64.2 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 29/83 (34%), Positives = 55/83 (66%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 211 EKHRMYMGQRYVEVYEINNEDVD 233
Score = 158 (60.7 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 42/96 (43%), Positives = 55/96 (57%)
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRP 148
+P A D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 388 LPEAA--DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKA 439
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 440 TGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 475
Score = 108 (43.1 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 273 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE---- 328
Query: 75 IANEVSDVRGGSPHRSIPRAK 95
+ V +G S P AK
Sbjct: 329 VRTHVGSYKG-KKIASFPTAK 348
Score = 69 (29.3 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++++ K G+A + V AL+++R MG+RYVEV+ ++
Sbjct: 186 LNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 231
>UNIPROTKB|F1MZF0 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016331 "morphogenesis of embryonic epithelium"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 OMA:LSFFSDC
EMBL:DAAA02018025 EMBL:DAAA02018026 IPI:IPI00700446
Ensembl:ENSBTAT00000011313 ArrayExpress:F1MZF0 Uniprot:F1MZF0
Length = 399
Score = 173 (66.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 87 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNS 144
P +P +K +E D V+ ++R +GLP+S +D++ FF D + E+ IH +N
Sbjct: 52 PEYELPPSKLGEEVDD--VY--LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNR 107
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
DG+ G+A +E + +D + A+ K RM +G RY+E++ ++E++D
Sbjct: 108 DGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVD 152
Score = 172 (65.6 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 37/85 (43%), Positives = 54/85 (63%)
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSK 163
V+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E +
Sbjct: 166 VNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMAS 223
Query: 164 AAMAKDRMTLGSRYIELFPSSHEEM 188
A+ K R +G+RYIE+FPS E+
Sbjct: 224 QALLKHREEIGNRYIEIFPSRRNEV 248
Score = 158 (60.7 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 43/96 (44%), Positives = 55/96 (57%)
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRP 148
IP A D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 307 IPEAV--DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKA 358
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 359 TGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 394
Score = 105 (42.0 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P AL ++R+ +G RY+E+F S+R E
Sbjct: 192 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEVRTH 251
Query: 75 IANEVSDVRGGSP 87
+ + SP
Sbjct: 252 VGSHKGKKIASSP 264
Score = 69 (29.3 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++++ K G+A + V AL+++R MG+RYVEV+ ++
Sbjct: 105 LNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 150
>ZFIN|ZDB-GENE-030131-275 [details] [associations]
symbol:hnrnph1l "heterogeneous nuclear
ribonucleoprotein H1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-275
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 EMBL:BC044161 IPI:IPI00512644 RefSeq:NP_997754.1
UniGene:Dr.782 ProteinModelPortal:Q803W8 SMR:Q803W8 STRING:Q803W8
PRIDE:Q803W8 GeneID:321556 KEGG:dre:321556 CTD:321556
InParanoid:Q803W8 NextBio:20807425 ArrayExpress:Q803W8 Bgee:Q803W8
Uniprot:Q803W8
Length = 407
Score = 192 (72.6 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 37/86 (43%), Positives = 58/86 (67%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S +++ FF +S + +IH T +GRP+GEAFVE + +D K A+
Sbjct: 8 VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAV 67
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RY+E+F S++ EMD L
Sbjct: 68 KKDRESMGHRYVEVFKSNNVEMDWVL 93
Score = 180 (68.4 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 34/81 (41%), Positives = 54/81 (66%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G++RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ + ++ A+
Sbjct: 107 GLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALK 166
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 167 KHKERIGHRYIEIFKSSRAEV 187
Score = 166 (63.5 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 97 HDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 155
+ +G + TG + +RGLP+ A + DI +FF L+ +HI + DGR TGEA VE
Sbjct: 242 YGDGGNFQSTTGHCVHMRGLPYRATEPDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVE 299
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
FA ED+ AAM+ D+ + RY+ELF +S
Sbjct: 300 FATHEDAVAAMSNDKANMQHRYVELFLNS 328
Score = 82 (33.9 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+GEAF L + A++++R++MG RYVEVF+S E
Sbjct: 50 SGEAFVELESEDDLKIAVKKDRESMGHRYVEVFKSNNVE 88
Score = 79 (32.9 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 148 TGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAE 186
>ZFIN|ZDB-GENE-060421-3878 [details] [associations]
symbol:zgc:136953 "zgc:136953" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060421-3878 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 GeneTree:ENSGT00620000087736 OMA:PYDRPLG
OrthoDB:EOG49P9ZV EMBL:BX530068 IPI:IPI00485717 UniGene:Dr.76052
Ensembl:ENSDART00000057651 Ensembl:ENSDART00000113082
Uniprot:B8A5E1
Length = 396
Score = 203 (76.5 bits), Expect = 8.2e-16, P = 8.2e-16
Identities = 40/88 (45%), Positives = 59/88 (67%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S ++++ FF D V + + T + +GRP+GEAFVE ++ED K A+
Sbjct: 9 VVRIRGLPWSCTQEEVASFFSDCDIVGKVNGVCFTFSKEGRPSGEAFVELKSSEDFKKAL 68
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
AKDR +G RYIE+F S+ EMD L R
Sbjct: 69 AKDRKYMGHRYIEVFRSNRSEMDWVLKR 96
Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 54/162 (33%), Positives = 85/162 (52%)
Query: 38 VLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH 97
++G V F + + G +VE+ S +++ KA+A + R HR I +S+
Sbjct: 33 IVGKVNGVCFTFSKEGRPSGEAFVELKSS--EDFKKALAKD----RKYMGHRYIEVFRSN 86
Query: 98 DEGKDSAV-HTG----------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
D + +G +LRLRGLPF K++I+ FF + + I + M+ G
Sbjct: 87 RSEMDWVLKRSGPTDYDGSSGCMLRLRGLPFGCSKEEIVQFFSGLKIVPNGITLPMDYQG 146
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
R TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EM
Sbjct: 147 RSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEM 188
Score = 173 (66.0 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 39/100 (39%), Positives = 58/100 (58%)
Query: 97 HDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 155
+ +S H+G + +RGLPF A + D+ FF L+ +HI M +G+ TGEA VE
Sbjct: 278 YSNDSNSGFHSGHFVHMRGLPFRATESDVAHFFGP--LTPVRVHIDMGPNGKSTGEADVE 335
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
F + ED+ +AM+KD+ + RYIELF +S + RG
Sbjct: 336 FRSHEDAVSAMSKDKNHMQHRYIELFLNSTSSGPSEMGRG 375
Score = 87 (35.7 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
K + +GEAF L AL ++R+ MG RY+EVFRS R E
Sbjct: 46 KEGRPSGEAFVELKSSEDFKKALAKDRKYMGHRYIEVFRSNRSE 89
Score = 80 (33.2 bits), Expect = 7.9e-19, Sum P(2) = 7.9e-19
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE---YYK 73
TGEAF + AL ++++ +G RY+E+F+S R E YY+
Sbjct: 149 TGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEMRAYYE 193
>UNIPROTKB|F1RUP2 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016331 "morphogenesis of embryonic epithelium"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 OMA:LSFFSDC
EMBL:FP325194 RefSeq:XP_003129120.1 UniGene:Ssc.12808
Ensembl:ENSSSCT00000009793 GeneID:100516986 KEGG:ssc:100516986
Uniprot:F1RUP2
Length = 479
Score = 173 (66.0 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 87 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNS 144
P +P +K +E D V+ ++R +GLP+S +D++ FF D + E+ IH +N
Sbjct: 132 PEYELPPSKLGEEVDD--VY--LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNR 187
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
DG+ G+A +E + +D + A+ K RM +G RY+E++ ++E++D
Sbjct: 188 DGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVD 232
Score = 172 (65.6 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 37/85 (43%), Positives = 54/85 (63%)
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSK 163
V+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E +
Sbjct: 246 VNDGVVRLRGLPYSCNEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMAN 303
Query: 164 AAMAKDRMTLGSRYIELFPSSHEEM 188
A+ K R +G+RYIE+FPS E+
Sbjct: 304 QALLKHREEIGNRYIEIFPSRRNEV 328
Score = 157 (60.3 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 40/89 (44%), Positives = 52/89 (58%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 392 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 445
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 446 FETHEDAVAAMLKDRSHVHHRYIELFLNS 474
Score = 106 (42.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
+ IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 272 LHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 331
Query: 75 IANEVSDVRGGSP 87
+ + SP
Sbjct: 332 VGSHKGKKMASSP 344
Score = 69 (29.3 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++++ K G+A + V AL+++R MG+RYVEV+ ++
Sbjct: 185 LNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 230
>UNIPROTKB|F1LRK4 [details] [associations]
symbol:Grsf1 "Protein Grsf1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 GeneTree:ENSGT00620000087736
IPI:IPI00364208 PRIDE:F1LRK4 Ensembl:ENSRNOT00000004551
ArrayExpress:F1LRK4 Uniprot:F1LRK4
Length = 361
Score = 171 (65.3 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 37/86 (43%), Positives = 54/86 (62%)
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDS 162
A+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E +
Sbjct: 127 ALSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMA 184
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ K R +G+RYIE+FPS E+
Sbjct: 185 NQALLKHREEIGNRYIEIFPSRRNEV 210
Score = 170 (64.9 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 30/83 (36%), Positives = 55/83 (66%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 32 LIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 91
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 92 EKHRMYMGQRYVEVYEINNEDVD 114
Score = 152 (58.6 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 40/93 (43%), Positives = 54/93 (58%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGE 151
A++ D G ++H + +RGLPF A DI++FF + ITM +S G+ TGE
Sbjct: 270 AEAVDFGAVPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGE 323
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A V F ED+ AAM KDR + RYIELF +S
Sbjct: 324 ADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 356
Score = 105 (42.0 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 154 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE 209
Score = 69 (29.3 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++++ K G+A + V AL+++R MG+RYVEV+ ++
Sbjct: 67 LNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 112
>UNIPROTKB|Q5F3D2 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG262593
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OMA:PYDRPLG
OrthoDB:EOG49P9ZV EMBL:AADN02028014 EMBL:AJ851718 IPI:IPI00573787
RefSeq:NP_001012610.1 UniGene:Gga.22904 SMR:Q5F3D2
Ensembl:ENSGALT00000006294 GeneID:423686 KEGG:gga:423686
InParanoid:Q5F3D2 NextBio:20826120 Uniprot:Q5F3D2
Length = 342
Score = 189 (71.6 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
H+ D+ ++RLRGLPF K++I+ FF+ + + I +T++ GR TGEAFV+F
Sbjct: 7 HNGPTDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQF 66
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 67 ASKEIAENALGKHKERIGHRYIEIFKSSKSEI 98
Score = 175 (66.7 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 40/84 (47%), Positives = 54/84 (64%)
Query: 103 SAVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF E
Sbjct: 191 SGFHGGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHE 248
Query: 161 DSKAAMAKDRMTLGSRYIELFPSS 184
D+ AAM+KD+ + RYIELF +S
Sbjct: 249 DAVAAMSKDKNHMQHRYIELFLNS 272
Score = 75 (31.5 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL ++++ +G RY+E+F+S + E
Sbjct: 59 TGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSSKSE 97
>UNIPROTKB|F1LMB8 [details] [associations]
symbol:Grsf1 "Protein Grsf1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 OMA:LSFFSDC IPI:IPI00949228
PRIDE:F1LMB8 Ensembl:ENSRNOT00000065436 ArrayExpress:F1LMB8
Uniprot:F1LMB8
Length = 479
Score = 171 (65.3 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 37/86 (43%), Positives = 54/86 (62%)
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDS 162
A+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E +
Sbjct: 245 ALSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMA 302
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ K R +G+RYIE+FPS E+
Sbjct: 303 NQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 170 (64.9 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 30/83 (36%), Positives = 55/83 (66%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
Score = 152 (58.6 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
Identities = 40/93 (43%), Positives = 54/93 (58%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGE 151
A++ D G ++H + +RGLPF A DI++FF + ITM +S G+ TGE
Sbjct: 388 AEAVDFGAVPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGE 441
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A V F ED+ AAM KDR + RYIELF +S
Sbjct: 442 ADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 474
Score = 105 (42.0 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 272 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE 327
Score = 69 (29.3 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++++ K G+A + V AL+++R MG+RYVEV+ ++
Sbjct: 185 LNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 230
>ZFIN|ZDB-GENE-040426-1856 [details] [associations]
symbol:hnrnph1 "heterogeneous nuclear
ribonucleoprotein H1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1856 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 CTD:3187 KO:K12898 InterPro:IPR012996
Pfam:PF08080 EMBL:CU855621 EMBL:CU658205 EMBL:BC065439
IPI:IPI00489200 RefSeq:NP_991247.1 UniGene:Dr.17640 SMR:Q6P0V0
Ensembl:ENSDART00000059918 GeneID:402984 KEGG:dre:402984
NextBio:20816791 Uniprot:Q6P0V0
Length = 403
Score = 210 (79.0 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 41/86 (47%), Positives = 59/86 (68%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S D++ FF + ++ + SIH T +GRP+GEAFVEF + ED K A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKIAV 67
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 68 KKDRETMGHRYVEVFKSNSVEMDWVL 93
Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 51/155 (32%), Positives = 80/155 (51%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 104
+ F R + G +VE F S +E K + + G HR + KS+ D
Sbjct: 39 IHFTYTREGRPSGEAFVE-FES--EEDLKIAVKKDRETMG---HRYVEVFKSNSVEMDWV 92
Query: 105 V-HTG----------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
+ HTG ++RLRGLPF K++I+ FF + + I + ++ GR TGEAF
Sbjct: 93 LKHTGPNCPETGGDGLVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGEAF 152
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+FA+ + ++ A+ K + +G RYIE+F SS E+
Sbjct: 153 VQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEV 187
Score = 173 (66.0 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A + DI +FF L+ +H+ + DGR TGEA VEF
Sbjct: 240 DSGSSFQSTTGHCVHMRGLPYRATETDIYNFFSP--LNPVRVHLEIGPDGRVTGEADVEF 297
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 298 ATHEDAVAAMSKDKANMQHRYVELFLNS 325
Score = 79 (32.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 148 TGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAE 186
Score = 77 (32.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+GEAF + A++++R+ MG RYVEVF+S E
Sbjct: 50 SGEAFVEFESEEDLKIAVKKDRETMGHRYVEVFKSNSVE 88
>MGI|MGI:106479 [details] [associations]
symbol:Grsf1 "G-rich RNA sequence binding factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106479 GO:GO:0005739 GO:GO:0000166 GO:GO:0009952
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016331 CTD:2926
eggNOG:NOG319259 HOGENOM:HOG000220896 HOVERGEN:HBG055557
OrthoDB:EOG4XPQGW EMBL:AK044889 EMBL:AK045986 EMBL:AK077782
IPI:IPI00453582 RefSeq:NP_848815.2 UniGene:Mm.332474
ProteinModelPortal:Q8C5Q4 SMR:Q8C5Q4 STRING:Q8C5Q4
PhosphoSite:Q8C5Q4 PaxDb:Q8C5Q4 PRIDE:Q8C5Q4 DNASU:231413
Ensembl:ENSMUST00000078945 GeneID:231413 KEGG:mmu:231413
UCSC:uc008yab.1 GeneTree:ENSGT00620000087736 InParanoid:Q8C5Q4
OMA:LSFFSDC NextBio:380544 Bgee:Q8C5Q4 CleanEx:MM_GRSF1
Genevestigator:Q8C5Q4 GermOnline:ENSMUSG00000044221 Uniprot:Q8C5Q4
Length = 479
Score = 174 (66.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 36/105 (34%), Positives = 65/105 (61%)
Query: 87 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNS 144
P + +K DE D V+ ++R +GLP+S +D+++FF D + SE+ IH +N
Sbjct: 132 PEYELSPSKLGDEVDD--VY--LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNR 187
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
DG+ G+A +E + +D + A+ K RM +G RY+E++ ++E++D
Sbjct: 188 DGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVD 232
Score = 169 (64.5 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 50/154 (32%), Positives = 79/154 (51%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHD------ 98
+ F L R+ + G +E+ Q+ KA+ E + G + + + D
Sbjct: 181 IHFLLNRDGKRRGDALIEM--ESEQDVQKAL--EKHRMYMGQRYVEVYEINNEDVDALMK 236
Query: 99 --EGKDSAVHT-GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFV 154
+ K S V + G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V
Sbjct: 237 SLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYV 294
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 295 QFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 148 (57.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 39/89 (43%), Positives = 51/89 (57%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G ++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 392 DFGTLPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 445
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 446 FDTHEDAVAAMLKDRSHVQHRYIELFLNS 474
Score = 106 (42.4 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 272 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 331
Query: 75 IANEVSDVRGGSP 87
+ + SP
Sbjct: 332 VGSHKGKKMTSSP 344
Score = 69 (29.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++++ K G+A + V AL+++R MG+RYVEV+ ++
Sbjct: 185 LNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 230
>UNIPROTKB|F1LV61 [details] [associations]
symbol:F1LV61 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
IPI:IPI00952226 ProteinModelPortal:F1LV61
Ensembl:ENSRNOT00000020819 Uniprot:F1LV61
Length = 408
Score = 155 (59.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 47/144 (32%), Positives = 72/144 (50%)
Query: 57 GRRYVEVF-RSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD---------SA-- 104
GR+ E F + + +E K E + G HR I K H G D SA
Sbjct: 52 GRQSGEAFVKPESEEDVKLALKEDRESMG---HRYIEVFKPHRTGMDWVLKRSGPNSAYS 108
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
+ G + L+GLP K++ + FF + + + + +G+ TGEAFV+FA+ E ++
Sbjct: 109 ANDGFVSLQGLPCGCTKEEAIQFFSGLEIVPNGNTLPVYLEGKITGEAFVQFASQELAEK 168
Query: 165 AMAKDRMTLGSRYIELFPSSHEEM 188
A K + +G RYIE+F SS EE+
Sbjct: 169 AFGKHKERIGHRYIEVFKSSQEEV 192
Score = 150 (57.9 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 36/79 (45%), Positives = 50/79 (63%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + RGLP+ A ++DI +FF L+ +H + DGR TGEA EFA E++ AA
Sbjct: 287 TGHCVHTRGLPYKATENDIYNFFSP--LNPVRVHTEIGPDGRVTGEADAEFATHEEAVAA 344
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+KDR + RYI+LF +S
Sbjct: 345 MSKDR-AMQHRYIQLFLNS 362
Score = 150 (57.9 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++L GLP+S ++ +F D + + +H +GR +GEAFV+ + ED K A+
Sbjct: 13 VVKLLGLPWSCSIPEVQNFLSDCTIHDGVVGVHFIYTREGRQSGEAFVKPESEEDVKLAL 72
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
+DR ++G RYIE+F MD L R
Sbjct: 73 KEDRESMGHRYIEVFKPHRTGMDWVLKR 100
Score = 100 (40.3 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 3 LPQVQVL---CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGR 58
+P+VQ CTIH +V V F++ + + +GEAF V AL+ +R++MG
Sbjct: 25 IPEVQNFLSDCTIHD---GVVGVHFIYTREGRQSGEAFVKPESEEDVKLALKEDRESMGH 81
Query: 59 RYVEVFRSKR 68
RY+EVF+ R
Sbjct: 82 RYIEVFKPHR 91
Score = 86 (35.3 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
Identities = 27/95 (28%), Positives = 44/95 (46%)
Query: 21 DVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ L V+ K TGEAF + A ++++ +G RY+EVF+S ++E S
Sbjct: 142 NTLPVYLEGKITGEAFVQFASQELAEKAFGKHKERIGHRYIEVFKSSQEE-----VRSHS 196
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
D S+ R +D + + GI+R GL
Sbjct: 197 DPP--LKFMSVQRPGPYDRPGTARRYVGIVRQAGL 229
>RGD|1310855 [details] [associations]
symbol:Esrp2 "epithelial splicing regulatory protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA;ISO;ISS]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:1310855 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
eggNOG:NOG262593 HOGENOM:HOG000112401 OrthoDB:EOG49078K
EMBL:BC166804 IPI:IPI00359594 UniGene:Rn.231924
ProteinModelPortal:B2RYJ8 SMR:B2RYJ8 PhosphoSite:B2RYJ8
PRIDE:B2RYJ8 UCSC:RGD:1310855 ArrayExpress:B2RYJ8
Genevestigator:B2RYJ8 Uniprot:B2RYJ8
Length = 716
Score = 230 (86.0 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 64/175 (36%), Positives = 94/175 (53%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 278 LCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 329
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S + D ILRLRGLPFSAG D++DF D +
Sbjct: 330 AGGTS-LEVARFLSRE---DQV----ILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLL 381
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 382 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 436
Score = 216 (81.1 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 57/184 (30%), Positives = 96/184 (52%)
Query: 20 VD-VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
VD +LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + +
Sbjct: 377 VDGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 436
Query: 78 EVSDV---RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV-- 132
+ +P IP + G+D +RLRGLP++A +DI+ F +
Sbjct: 437 YAASPLLPTLTAPLLPIPFPLAGGTGRDC------VRLRGLPYTATIEDILSFLGEAAAD 490
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEA 191
+ +H+ +N GRP+G+AF++ + E + AA + + + RY+E+ P S EEM
Sbjct: 491 IRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAAQRCHKKVMKERYVEVVPCSTEEMSRV 550
Query: 192 LSRG 195
L G
Sbjct: 551 LMGG 554
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 306
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 307 HKHHMGVRYIEVYKATGEE 325
>UNIPROTKB|G3V8M2 [details] [associations]
symbol:Esrp2 "Epithelial-splicing regulatory protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 SMART:SM00360 RGD:1310855 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CH473972
GeneTree:ENSGT00620000087828 KO:K14947 CTD:80004 OMA:VIKQKYE
UniGene:Rn.231924 RefSeq:NP_001100893.1 PRIDE:G3V8M2
Ensembl:ENSRNOT00000026873 GeneID:307810 KEGG:rno:307810
NextBio:657907 Uniprot:G3V8M2
Length = 717
Score = 230 (86.0 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 64/175 (36%), Positives = 94/175 (53%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S + D ILRLRGLPFSAG D++DF D +
Sbjct: 331 AGGTS-LEVARFLSRE---DQV----ILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 216 (81.1 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 57/184 (30%), Positives = 96/184 (52%)
Query: 20 VD-VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
VD +LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + +
Sbjct: 378 VDGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Query: 78 EVSDV---RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV-- 132
+ +P IP + G+D +RLRGLP++A +DI+ F +
Sbjct: 438 YAASPLLPTLTAPLLPIPFPLAGGTGRDC------VRLRGLPYTATIEDILSFLGEAAAD 491
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEA 191
+ +H+ +N GRP+G+AF++ + E + AA + + + RY+E+ P S EEM
Sbjct: 492 IRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAAQRCHKKVMKERYVEVVPCSTEEMSRV 551
Query: 192 LSRG 195
L G
Sbjct: 552 LMGG 555
Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>MGI|MGI:1924661 [details] [associations]
symbol:Esrp2 "epithelial splicing regulatory protein 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924661 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
HSSP:P55795 CTD:80004 OMA:VIKQKYE OrthoDB:EOG49078K EMBL:BC031444
EMBL:AK020578 IPI:IPI00276878 RefSeq:NP_789808.1 UniGene:Mm.183003
ProteinModelPortal:Q8K0G8 SMR:Q8K0G8 STRING:Q8K0G8
PhosphoSite:Q8K0G8 PaxDb:Q8K0G8 PRIDE:Q8K0G8
Ensembl:ENSMUST00000115979 GeneID:77411 KEGG:mmu:77411
UCSC:uc009nff.1 InParanoid:Q8K0G8 NextBio:346885 Bgee:Q8K0G8
CleanEx:MM_RBM35B Genevestigator:Q8K0G8 Uniprot:Q8K0G8
Length = 717
Score = 224 (83.9 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 63/175 (36%), Positives = 93/175 (53%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S + D ILRLRGLPFSAG D++ F D +
Sbjct: 331 AGGTS-LEVARFLSRE---DQV----ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 214 (80.4 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 55/181 (30%), Positives = 94/181 (51%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + +
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAA 440
Query: 81 DV---RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SPLLPTLTAPLLPIPFPLAGGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ + E + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMMSVERALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 144 (55.7 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>ZFIN|ZDB-GENE-060825-196 [details] [associations]
symbol:grsf1 "G-rich RNA sequence binding factor 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060825-196 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BX323596 GeneTree:ENSGT00620000087736
IPI:IPI01023901 ProteinModelPortal:F8W4V6
Ensembl:ENSDART00000149868 ArrayExpress:F8W4V6 Bgee:F8W4V6
Uniprot:F8W4V6
Length = 403
Score = 202 (76.2 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 55/178 (30%), Positives = 94/178 (52%)
Query: 17 MDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+D+V+ + +++ K +G+AF + AL+++R+ +G RY+E+F + +
Sbjct: 235 LDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKALKKDREILGNRYIEIFPAMKS---- 290
Query: 74 AIANEVSDVRGGSPHRSI-PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
AI S R R PRA+ +++ V ++ +RGLPF A +DI+ FF
Sbjct: 291 AIP---SQNRSWQNDRVFTPRAEDPPL-RNTTVTKNVIHMRGLPFDAKAEDIVKFFAPVR 346
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
L + + + +G+PTGEA F ED+ AM+KDR + RYIEL+ +S +E
Sbjct: 347 LMK--VVVEFGPEGKPTGEAEAYFKTHEDAVLAMSKDREFIMERYIELYLNSCPPSEE 402
Score = 183 (69.5 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLP+S + DI+ FF + ED + I +N G+ +G+AFVEFA ++ A+ K
Sbjct: 213 VVRLRGLPYSCTEGDIIRFFSGLDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKALKK 272
Query: 169 DRMTLGSRYIELFPS 183
DR LG+RYIE+FP+
Sbjct: 273 DREILGNRYIEIFPA 287
Score = 133 (51.9 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I++ +GLP+S +DIM FF + + + +HI N G+P+G+AF+E + ED A+
Sbjct: 116 IVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILYNKYGKPSGQAFIELEHEEDVGKAL 175
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ R L R+IE+ ++++ + L +
Sbjct: 176 DQHRHYLRDRFIEVREVTNKDAEAILKASK 205
Score = 56 (24.8 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 20 VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 63
V +L+ +K K +G+AF L + V AL ++R + R++EV
Sbjct: 147 VHILY-NKYGKPSGQAFIELEHEEDVGKALDQHRHYLRDRFIEV 189
>UNIPROTKB|F1PA85 [details] [associations]
symbol:ESRP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00620000087828 KO:K14947 CTD:80004 OMA:VIKQKYE
EMBL:AAEX03004121 RefSeq:XP_851504.1 Ensembl:ENSCAFT00000032365
GeneID:489745 KEGG:cfa:489745 Uniprot:F1PA85
Length = 717
Score = 223 (83.6 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 63/175 (36%), Positives = 93/175 (53%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S + D ILRLRGLPFSAG D++ F D +
Sbjct: 331 AGGTS-LEVARFLSRE---DQV----ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRSTAAEVQQVLNR 437
Score = 222 (83.2 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 57/181 (31%), Positives = 95/181 (52%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + S
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRSTAAEVQQVLNRYAS 440
Query: 81 DV---RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SPLLPALTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 144 (55.7 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>UNIPROTKB|F1MSN9 [details] [associations]
symbol:ESRP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 OMA:VIKQKYE EMBL:DAAA02046691
IPI:IPI00699877 UniGene:Bt.94194 Ensembl:ENSBTAT00000005736
NextBio:20869663 Uniprot:F1MSN9
Length = 717
Score = 223 (83.6 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 63/175 (36%), Positives = 93/175 (53%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S + D ILRLRGLPFSAG D++ F D +
Sbjct: 331 AGGTS-LEVARFLSRE---DQV----ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 223 (83.6 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 57/181 (31%), Positives = 95/181 (52%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + S
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 440
Query: 81 DV---RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS--E 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SPLLPTLTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAVDIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 136 (52.9 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 113 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 172
RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ + +
Sbjct: 252 RGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHH 311
Query: 173 LGSRYIELFPSSHEE 187
+G RYIE++ ++ EE
Sbjct: 312 MGVRYIEVYKATGEE 326
>UNIPROTKB|J9NZV3 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AAEX03013911 Ensembl:ENSCAFT00000048972 Uniprot:J9NZV3
Length = 888
Score = 224 (83.9 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 67/193 (34%), Positives = 101/193 (52%)
Query: 13 HHQLMDIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
H +D V +L H +NN G P AL+RNR M +RYVEV + ++
Sbjct: 325 HGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 381
Query: 71 YYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS---AVH-TGI-LRLRGLPFSA 119
+ A I + S G H +++PR+KS K S + H G + L+GLPF A
Sbjct: 382 WVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEA 441
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
++DFFK + EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I+
Sbjct: 442 ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQ 501
Query: 180 LFPSSHEEMDEAL 192
+ P + + M E +
Sbjct: 502 VHPITKKGMLEKI 514
Score = 155 (59.6 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 45/179 (25%), Positives = 88/179 (49%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG S+ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMMLNPEGDVSSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 626
Score = 133 (51.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+ G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++RM
Sbjct: 308 VHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 172 TLGSRYIELFPSSHEE 187
+ RY+E+ P++ +
Sbjct: 366 LMIQRYVEVSPATERQ 381
Score = 127 (49.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 117 (46.2 bits), Expect = 0.00024, P = 0.00024
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 806 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 865
Query: 168 -KDRMTLGSR 176
DR +GSR
Sbjct: 866 LNDR-PIGSR 874
>UNIPROTKB|F1P982 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:AAEX03013911 Ensembl:ENSCAFT00000013161
Uniprot:F1P982
Length = 945
Score = 224 (83.9 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 67/193 (34%), Positives = 101/193 (52%)
Query: 13 HHQLMDIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
H +D V +L H +NN G P AL+RNR M +RYVEV + ++
Sbjct: 347 HGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 403
Query: 71 YYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS---AVH-TGI-LRLRGLPFSA 119
+ A I + S G H +++PR+KS K S + H G + L+GLPF A
Sbjct: 404 WVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEA 463
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
++DFFK + EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I+
Sbjct: 464 ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQ 523
Query: 180 LFPSSHEEMDEAL 192
+ P + + M E +
Sbjct: 524 VHPITKKGMLEKI 536
Score = 155 (59.6 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 45/179 (25%), Positives = 88/179 (49%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 475 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 530
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG S+ + +PFS K D++ F +
Sbjct: 531 GMLEKIDMIRKRLQNFSYDQREMMLNPEGDVSSAKV-CAHITNIPFSITKMDVLQFLEGI 589
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 590 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 648
Score = 133 (51.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+ G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++RM
Sbjct: 330 VHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 387
Query: 172 TLGSRYIELFPSSHEE 187
+ RY+E+ P++ +
Sbjct: 388 LMIQRYVEVSPATERQ 403
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 81
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 82 TGGTIKGSKVTLLLSSKTEMQNMIELSR 109
Score = 123 (48.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 870 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 929
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 930 LNDR-PIGSRKVKL 942
>UNIPROTKB|I3LLW0 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:CU210870 EMBL:CU914282 Ensembl:ENSSSCT00000023753
Ensembl:ENSSSCT00000028045 Uniprot:I3LLW0
Length = 955
Score = 224 (83.9 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 67/193 (34%), Positives = 101/193 (52%)
Query: 13 HHQLMDIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
H +D V +L H +NN G P AL+RNR M +RYVEV + ++
Sbjct: 347 HGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 403
Query: 71 YYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS---AVH-TGI-LRLRGLPFSA 119
+ A I + S G H +++PR+KS K S + H G + L+GLPF A
Sbjct: 404 WVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEA 463
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
++DFFK + EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I+
Sbjct: 464 ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQ 523
Query: 180 LFPSSHEEMDEAL 192
+ P + + M E +
Sbjct: 524 VHPITKKGMLEKI 536
Score = 153 (58.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 44/179 (24%), Positives = 88/179 (49%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 475 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 530
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 531 GMLEKIDMIRKRLQNFSYDQREMMLNPEGDVNSAKV-CAHITNIPFSVTKMDVLQFLEGI 589
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 590 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 648
Score = 129 (50.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+ G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++RM
Sbjct: 330 VHGMPFSAVENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 387
Query: 172 TLGSRYIELFPSSHEE 187
+ RY+E+ P++ +
Sbjct: 388 LMIQRYVEVSPATERQ 403
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 81
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 82 TGGTIKGSKVTLLLSSKTEMQNMIELSR 109
Score = 123 (48.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 880 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 939
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 940 LNDR-PIGSRKVKL 952
>UNIPROTKB|Q9H6T0 [details] [associations]
symbol:ESRP2 "Epithelial splicing regulatory protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0005813
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043484 eggNOG:NOG262593
HOGENOM:HOG000112401 KO:K14947 HSSP:Q9Z2X1 CTD:80004 OMA:VIKQKYE
OrthoDB:EOG49078K EMBL:AK025571 EMBL:AK025901 EMBL:BC030146
EMBL:AF289577 IPI:IPI00034099 IPI:IPI00827597 RefSeq:NP_079215.2
UniGene:Hs.436585 UniGene:Hs.592053 ProteinModelPortal:Q9H6T0
SMR:Q9H6T0 IntAct:Q9H6T0 STRING:Q9H6T0 PhosphoSite:Q9H6T0
DMDM:74761482 PaxDb:Q9H6T0 PRIDE:Q9H6T0 Ensembl:ENST00000473183
Ensembl:ENST00000565858 GeneID:80004 KEGG:hsa:80004 UCSC:uc002evq.1
UCSC:uc010cfa.1 GeneCards:GC16M068263 HGNC:HGNC:26152 HPA:HPA048597
MIM:612960 neXtProt:NX_Q9H6T0 PharmGKB:PA164719361
InParanoid:Q9H6T0 ChiTaRS:ESRP2 GenomeRNAi:80004 NextBio:70079
Bgee:Q9H6T0 CleanEx:HS_RBM35B Genevestigator:Q9H6T0 Uniprot:Q9H6T0
Length = 727
Score = 222 (83.2 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 57/181 (31%), Positives = 95/181 (52%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + S
Sbjct: 391 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 450
Query: 81 DV---RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 451 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 504
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 505 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 564
Query: 195 G 195
G
Sbjct: 565 G 565
Score = 220 (82.5 bits), Expect = 4.6e-17, P = 4.6e-17
Identities = 62/175 (35%), Positives = 93/175 (53%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 289 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 340
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S + D ILRLRGLPFSAG D++ F + +
Sbjct: 341 AGGTS-LEVARFLSRE---DQV----ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLL 392
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 393 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 143 (55.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 318 HKHHMGVRYIEVYKATGEE 336
>MGI|MGI:1922960 [details] [associations]
symbol:Rbm12 "RNA binding motif protein 12" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1922960 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL833786 UniGene:Mm.27660
GeneTree:ENSGT00620000087828 HOVERGEN:HBG057691 CTD:10137
OMA:PVFLGPL EMBL:AF345334 EMBL:AF393215 EMBL:AF393216 EMBL:AK017591
EMBL:AK029180 EMBL:AK035014 EMBL:AK080772 EMBL:AK166833
EMBL:BC026891 EMBL:BC027810 EMBL:BC052473 IPI:IPI00322263
RefSeq:NP_083673.3 RefSeq:NP_733486.2 UniGene:Mm.441281 PDB:2CQP
PDBsum:2CQP ProteinModelPortal:Q8R4X3 SMR:Q8R4X3 IntAct:Q8R4X3
STRING:Q8R4X3 PhosphoSite:Q8R4X3 PRIDE:Q8R4X3
Ensembl:ENSMUST00000059647 Ensembl:ENSMUST00000109604 GeneID:75710
KEGG:mmu:75710 UCSC:uc008nmh.1 InParanoid:Q3TKT7 ChiTaRS:RBM12
EvolutionaryTrace:Q8R4X3 NextBio:343756 Bgee:Q8R4X3
CleanEx:MM_RBM12 Genevestigator:Q8R4X3
GermOnline:ENSMUSG00000038171 Uniprot:Q8R4X3
Length = 992
Score = 223 (83.6 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 67/193 (34%), Positives = 101/193 (52%)
Query: 13 HHQLMDIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
H +D V +L H +NN G P AL+RNR M +RYVEV + ++
Sbjct: 325 HGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 381
Query: 71 YYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS---AVH-TGI-LRLRGLPFSA 119
+ A I + S G H +++PR+KS K S + H G + L+GLPF A
Sbjct: 382 WVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEA 441
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
++DFFK + EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I+
Sbjct: 442 ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQ 501
Query: 180 LFPSSHEEMDEAL 192
+ P + + M E +
Sbjct: 502 VHPITKKGMLEKI 514
Score = 144 (55.7 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 44/179 (24%), Positives = 86/179 (48%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG+ S+ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQRELVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E ++H+ ++++G+ G+A V+F +D+ + R L R + + E+M E
Sbjct: 568 PVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 129 (50.5 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+ G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++RM
Sbjct: 308 VHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 172 TLGSRYIELFPSSHEE 187
+ RY+E+ P++ +
Sbjct: 366 LMIQRYVEVSPATERQ 381
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 124 (48.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 917 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 976
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 977 LNDR-PIGSRKVKL 989
>UNIPROTKB|D4A116 [details] [associations]
symbol:Rbm12 "Protein Rbm12" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1594333 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC118414 IPI:IPI00560597 Ensembl:ENSRNOT00000026700
ArrayExpress:D4A116 Uniprot:D4A116
Length = 1003
Score = 223 (83.6 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 67/193 (34%), Positives = 101/193 (52%)
Query: 13 HHQLMDIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
H +D V +L H +NN G P AL+RNR M +RYVEV + ++
Sbjct: 325 HGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 381
Query: 71 YYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS---AVH-TGI-LRLRGLPFSA 119
+ A I + S G H +++PR+KS K S + H G + L+GLPF A
Sbjct: 382 WVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEA 441
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
++DFFK + EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I+
Sbjct: 442 ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQ 501
Query: 180 LFPSSHEEMDEAL 192
+ P + + M E +
Sbjct: 502 VHPITKKGMLEKI 514
Score = 146 (56.5 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 44/179 (24%), Positives = 87/179 (48%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG+ S+ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F +D+ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 129 (50.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+ G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++RM
Sbjct: 308 VHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 172 TLGSRYIELFPSSHEE 187
+ RY+E+ P++ +
Sbjct: 366 LMIQRYVEVSPATERQ 381
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 124 (48.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 928 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 987
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 988 LNDR-PIGSRKVKL 1000
>RGD|1594333 [details] [associations]
symbol:Rbm12 "RNA binding motif protein 12" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1594333 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH474050 eggNOG:NOG299235
GeneTree:ENSGT00620000087828 HOVERGEN:HBG057691 CTD:10137
OMA:PVFLGPL EMBL:AC118414 EMBL:AY226099 IPI:IPI00421433
RefSeq:NP_001032746.1 UniGene:Rn.7119 SMR:Q6XLI7
Ensembl:ENSRNOT00000047246 GeneID:652928 KEGG:rno:652928
UCSC:RGD:1594333 HOGENOM:HOG000143525 InParanoid:Q6XLI7
NextBio:714873 Genevestigator:Q6XLI7 Uniprot:Q6XLI7
Length = 1032
Score = 223 (83.6 bits), Expect = 3.8e-17, P = 3.8e-17
Identities = 67/193 (34%), Positives = 101/193 (52%)
Query: 13 HHQLMDIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
H +D V +L H +NN G P AL+RNR M +RYVEV + ++
Sbjct: 325 HGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 381
Query: 71 YYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS---AVH-TGI-LRLRGLPFSA 119
+ A I + S G H +++PR+KS K S + H G + L+GLPF A
Sbjct: 382 WVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEA 441
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
++DFFK + EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I+
Sbjct: 442 ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQ 501
Query: 180 LFPSSHEEMDEAL 192
+ P + + M E +
Sbjct: 502 VHPITKKGMLEKI 514
Score = 146 (56.5 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 44/179 (24%), Positives = 87/179 (48%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG+ S+ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F +D+ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 129 (50.5 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+ G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++RM
Sbjct: 308 VHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 172 TLGSRYIELFPSSHEE 187
+ RY+E+ P++ +
Sbjct: 366 LMIQRYVEVSPATERQ 381
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 124 (48.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 957 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 1016
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 1017 LNDR-PIGSRKVKL 1029
>UNIPROTKB|F1MND5 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087828 CTD:10137 OMA:PVFLGPL
EMBL:DAAA02036525 IPI:IPI00924418 RefSeq:NP_001185821.1
UniGene:Bt.91136 Ensembl:ENSBTAT00000061188 GeneID:100138139
KEGG:bta:100138139 NextBio:20789665 Uniprot:F1MND5
Length = 953
Score = 222 (83.2 bits), Expect = 4.3e-17, P = 4.3e-17
Identities = 67/193 (34%), Positives = 100/193 (51%)
Query: 13 HHQLMDIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
H +D V +L H +NN G P AL+RNR M +RYVEV + ++
Sbjct: 325 HGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 381
Query: 71 YYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS---AVH-TGI-LRLRGLPFSA 119
+ A I + S G H + +PR+KS K S + H G + L+GLPF A
Sbjct: 382 WVAAGGHITFKQSIGPSGQTHPPPQPLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEA 441
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
++DFFK + EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I+
Sbjct: 442 ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQ 501
Query: 180 LFPSSHEEMDEAL 192
+ P + + M E +
Sbjct: 502 VHPITKKGMLEKI 514
Score = 152 (58.6 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 44/179 (24%), Positives = 88/179 (49%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMILNPEGDVTSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 626
Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+ G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++RM
Sbjct: 308 VHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 172 TLGSRYIELFPSSHEE 187
+ RY+E+ P++ +
Sbjct: 366 LMIQRYVEVSPATERQ 381
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 124 (48.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 878 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 937
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 938 LNDR-PIGSRKVKL 950
>UNIPROTKB|D6RIU0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041
ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00967216
ProteinModelPortal:D6RIU0 SMR:D6RIU0 Ensembl:ENST00000504348
ArrayExpress:D6RIU0 Bgee:D6RIU0 Uniprot:D6RIU0
Length = 168
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 131 (51.2 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 164
Query: 162 SKAA 165
++ A
Sbjct: 165 AEKA 168
Score = 92 (37.4 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
>UNIPROTKB|Q9NTZ6 [details] [associations]
symbol:RBM12 "RNA-binding protein 12" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CH471077 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL109827 UniGene:Hs.700188 GermOnline:ENSG00000125976
eggNOG:NOG299235 HOVERGEN:HBG057691 EMBL:AJ289772 EMBL:AF345332
EMBL:AF345335 EMBL:AF393214 EMBL:AB018308 EMBL:AK092239
EMBL:BC012787 EMBL:BC013981 EMBL:AL834472 EMBL:AB015336
IPI:IPI00550308 RefSeq:NP_001185767.1 RefSeq:NP_001185769.1
RefSeq:NP_006038.2 RefSeq:NP_690051.1 PDB:1WEL PDB:2CPY PDB:2DNN
PDB:2EK1 PDB:2EK6 PDBsum:1WEL PDBsum:2CPY PDBsum:2DNN PDBsum:2EK1
PDBsum:2EK6 ProteinModelPortal:Q9NTZ6 SMR:Q9NTZ6 IntAct:Q9NTZ6
MINT:MINT-1366084 STRING:Q9NTZ6 PhosphoSite:Q9NTZ6 DMDM:30173387
PaxDb:Q9NTZ6 PeptideAtlas:Q9NTZ6 PRIDE:Q9NTZ6 DNASU:10137
Ensembl:ENST00000359646 Ensembl:ENST00000374104
Ensembl:ENST00000374114 GeneID:10137 KEGG:hsa:10137 UCSC:uc002xdq.3
CTD:10137 GeneCards:GC20M034236 HGNC:HGNC:9898 HPA:HPA043258
HPA:HPA043621 MIM:607179 neXtProt:NX_Q9NTZ6 PharmGKB:PA34261
InParanoid:Q9NTZ6 OMA:PVFLGPL OrthoDB:EOG44TP7C PhylomeDB:Q9NTZ6
EvolutionaryTrace:Q9NTZ6 GenomeRNAi:10137 NextBio:38349
ArrayExpress:Q9NTZ6 Bgee:Q9NTZ6 CleanEx:HS_RBM12
Genevestigator:Q9NTZ6 Uniprot:Q9NTZ6
Length = 932
Score = 221 (82.9 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 66/193 (34%), Positives = 101/193 (52%)
Query: 13 HHQLMDIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
H +D V +L H +NN G P AL+RNR M +RYVEV + ++
Sbjct: 325 HGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 381
Query: 71 YYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS---AVH-TGI-LRLRGLPFSA 119
+ A I + + G H +++PR+KS K S + H G + L+GLPF A
Sbjct: 382 WVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEA 441
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
++DFFK + EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I+
Sbjct: 442 ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQ 501
Query: 180 LFPSSHEEMDEAL 192
+ P + + M E +
Sbjct: 502 VHPITKKGMLEKI 514
Score = 152 (58.6 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 44/179 (24%), Positives = 88/179 (49%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 626
Score = 133 (51.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+ G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++RM
Sbjct: 308 VHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 172 TLGSRYIELFPSSHEE 187
+ RY+E+ P++ +
Sbjct: 366 LMIQRYVEVSPATERQ 381
Score = 127 (49.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 124 (48.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 30/98 (30%), Positives = 52/98 (53%)
Query: 85 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 144
G H P + GK +++++ +PF+ D+I+DFF + + S+ + N
Sbjct: 836 GPIHIGGPPGFASSSGKPGPT---VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE 892
Query: 145 DGRPTGEAFVEFANAEDSKAAMA--KDRMTLGSRYIEL 180
G PTGEA V F + +++ AA+ DR +GSR ++L
Sbjct: 893 KGMPTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKL 929
>UNIPROTKB|Q5ZLR4 [details] [associations]
symbol:ESRP2 "Epithelial splicing regulatory protein 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043484
eggNOG:NOG262593 GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401
KO:K14947 HSSP:Q9Z2X1 EMBL:AJ719670 IPI:IPI00574410
RefSeq:NP_001025737.1 UniGene:Gga.9032 ProteinModelPortal:Q5ZLR4
SMR:Q5ZLR4 PRIDE:Q5ZLR4 Ensembl:ENSGALT00000005333 GeneID:415710
KEGG:gga:415710 CTD:80004 InParanoid:Q5ZLR4 OMA:VIKQKYE
OrthoDB:EOG49078K NextBio:20819270 Uniprot:Q5ZLR4
Length = 701
Score = 219 (82.2 bits), Expect = 5.6e-17, P = 5.6e-17
Identities = 55/179 (30%), Positives = 96/179 (53%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + +S
Sbjct: 360 LLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNRYMS 419
Query: 81 D-VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDS 137
+ P IP ++ + RLRGLP++AG DDI+DF D +
Sbjct: 420 TPLIPTLPTPIIPVIPPPYTIATGSIRDCV-RLRGLPYTAGIDDILDFMGDATADIKPHG 478
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
+H+ +N GRP+G+AF++ +A+ + K + + RY+E+F S EEM+ L G
Sbjct: 479 VHMVLNQQGRPSGDAFIQMKSADKAFMVAQKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 537
Score = 211 (79.3 bits), Expect = 4.0e-16, P = 4.0e-16
Identities = 57/175 (32%), Positives = 97/175 (55%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D AL+R++ +MG RY+EV+++ +E+ K +
Sbjct: 258 LCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLK--------I 309
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A ++D++ F ++ +
Sbjct: 310 AGGTSNE-VAQFLS----KENQV---IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLL 361
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV F+ E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 362 FVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 159 (61.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + + +N+ GR GEA V F N+E A+ +
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 286
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ EE
Sbjct: 287 HKHHMGSRYIEVYKATGEE 305
>UNIPROTKB|D6RFM3 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
HOGENOM:HOG000134241 IPI:IPI00965435 ProteinModelPortal:D6RFM3
SMR:D6RFM3 Ensembl:ENST00000513225 ArrayExpress:D6RFM3 Bgee:D6RFM3
Uniprot:D6RFM3
Length = 163
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 129 (50.5 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQE 163
Score = 92 (37.4 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
>UNIPROTKB|F1PQY5 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AAEX03015961 Ensembl:ENSCAFT00000014811 Uniprot:F1PQY5
Length = 521
Score = 213 (80.0 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 59/175 (33%), Positives = 96/175 (54%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 97 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 148
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A D+++ FF ++ I
Sbjct: 149 AGGTSNE-VAQFLS----KENQV---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGIL 200
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 201 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 255
Score = 212 (79.7 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 56/178 (31%), Positives = 94/178 (52%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + S
Sbjct: 199 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 258
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
P I + V I RLRGLP++A +DI+DF +F + +
Sbjct: 259 APLIPLPTPPIIPVLPQQFVPPTNVRDCI-RLRGLPYAATIEDILDFLGEFSTDIRTHGV 317
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + A K + T+ RY+E+F S EEM+ L G
Sbjct: 318 HMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 375
Score = 142 (55.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 132
A+ +E + R P R + +S K + I+R RGLP+ + DI FFK
Sbjct: 30 AMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTIVRARGLPWQSSDQDIARFFKGLN 89
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 90 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 144
>UNIPROTKB|Q6DEZ7 [details] [associations]
symbol:esrp1 "Epithelial splicing regulatory protein 1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
SUPFAM:SSF53098 GO:GO:0043484 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
OrthoDB:EOG42RD72 HSSP:P55795 EMBL:BC076946 RefSeq:NP_001005057.1
UniGene:Str.5962 ProteinModelPortal:Q6DEZ7 SMR:Q6DEZ7 PRIDE:Q6DEZ7
Ensembl:ENSXETT00000032125 GeneID:448608 KEGG:xtr:448608
Xenbase:XB-GENE-985138 InParanoid:Q6DEZ7 Bgee:Q6DEZ7 Uniprot:Q6DEZ7
Length = 687
Score = 214 (80.4 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 55/179 (30%), Positives = 99/179 (55%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + +N+ TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 360 ILFVTYPDNRPTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEVQQVL-NRYS 418
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHT-GILRLRGLPFSAGKDDIMDFFKDFV--LSEDS 137
P + P + V+ +RLRGLP++A +DI++F +F +
Sbjct: 419 SAPL-IPLPTPPIIPVLPQPFIPPVNVRDCIRLRGLPYAATIEDILEFLGEFSADIRTHG 477
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
+H+ +N GRP+G++F++ +A+ + A K + T+ RY+E+F S EEM+ L G
Sbjct: 478 VHMVLNHQGRPSGDSFIQMKSADRAYLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 536
Score = 205 (77.2 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 57/175 (32%), Positives = 95/175 (54%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 258 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------I 309
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A ++++ FF ++ I
Sbjct: 310 AGGTSNE-VAQFLS----KENQV---IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGIL 361
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D RPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 362 FVTYPDNRPTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 142 (55.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 287 HKHHMGNRYIEVYKATGED 305
>UNIPROTKB|Q7ZY29 [details] [associations]
symbol:esrp1 "Epithelial splicing regulatory protein 1"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
CTD:54845 KO:K14947 EMBL:BC044002 RefSeq:NP_001079524.1
UniGene:Xl.14515 HSSP:P55795 ProteinModelPortal:Q7ZY29 SMR:Q7ZY29
PRIDE:Q7ZY29 GeneID:379211 KEGG:xla:379211 Xenbase:XB-GENE-985143
Uniprot:Q7ZY29
Length = 688
Score = 214 (80.4 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 55/179 (30%), Positives = 99/179 (55%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + +N+ TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 360 ILFVTYPDNRPTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEVQQVL-NRYS 418
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHT-GILRLRGLPFSAGKDDIMDFFKDFV--LSEDS 137
P + P + V+ +RLRGLP++A +DI++F +F +
Sbjct: 419 SAPL-IPLPTPPIIPVLPQPFIPPVNVRDCIRLRGLPYAATIEDILEFLGEFSADIRTHG 477
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
+H+ +N GRP+G++F++ +A+ + A K + T+ RY+E+F S EEM+ L G
Sbjct: 478 VHMVLNHQGRPSGDSFIQMKSADRAYLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 536
Score = 205 (77.2 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 57/175 (32%), Positives = 95/175 (54%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 258 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------I 309
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A ++++ FF ++ I
Sbjct: 310 AGGTSNE-VAQFLS----KENQV---IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGIL 361
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D RPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 362 FVTYPDNRPTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 142 (55.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 287 HKHHMGNRYIEVYKATGED 305
>UNIPROTKB|F1PSN8 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00620000087828 OMA:VAAMTEC EMBL:AAEX03015961
Ensembl:ENSCAFT00000014804 Uniprot:F1PSN8
Length = 634
Score = 213 (80.0 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 59/175 (33%), Positives = 96/175 (54%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 214 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 265
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A D+++ FF ++ I
Sbjct: 266 AGGTSNE-VAQFLS----KENQV---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGIL 317
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 318 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 372
Score = 212 (79.7 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 56/178 (31%), Positives = 94/178 (52%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + S
Sbjct: 316 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 375
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
P I + V I RLRGLP++A +DI+DF +F + +
Sbjct: 376 APLIPLPTPPIIPVLPQQFVPPTNVRDCI-RLRGLPYAATIEDILDFLGEFSTDIRTHGV 434
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + A K + T+ RY+E+F S EEM+ L G
Sbjct: 435 HMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 492
Score = 142 (55.0 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 132
A+ +E + R P R + +S K + I+R RGLP+ + DI FFK
Sbjct: 147 AMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTIVRARGLPWQSSDQDIARFFKGLN 206
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 207 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 261
>UNIPROTKB|F1P509 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0043484 "regulation
of RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005886
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0043484 GeneTree:ENSGT00620000087828 OMA:VAAMTEC
EMBL:AADN02024878 IPI:IPI00596521 Ensembl:ENSGALT00000025730
Uniprot:F1P509
Length = 523
Score = 211 (79.3 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 56/178 (31%), Positives = 95/178 (53%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV + +++ TG+AF + AL++++ +G+RY+E+FRS E + + S
Sbjct: 275 VLFVTYPDSRPTGDAFVLFACEEYAQNALKKHKDLLGKRYIELFRSTAAEVQQVLNRYSS 334
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
P I + V I RLRGLP++A +DI++F +F + +
Sbjct: 335 TPLIPLPTPPILPVLPQQFVPPTNVRDCI-RLRGLPYAATIEDILEFLGEFSTDIRTHGV 393
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 394 HMVLNHQGRPSGDAFIQMKSADRAFLAAQRCHKKTMKDRYVEVFQCSAEEMNFVLMGG 451
Score = 201 (75.8 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 55/175 (31%), Positives = 94/175 (53%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K ++
Sbjct: 171 LCLNAQGRRNGEALVRFVNEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK-----IAGA 225
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIH 139
+G S + + S K++ V I+R+RGLPF+ ++++ FF ++ +
Sbjct: 226 KGTS--NEVAQFLS----KENQV---IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVL 276
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D RPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 277 FVTYPDSRPTGDAFVLFACEEYAQNALKKHKDLLGKRYIELFRSTAAEVQQVLNR 331
Score = 147 (56.8 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F N E A+ +
Sbjct: 140 VIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQR 199
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 200 HKHHMGNRYIEVYKATGED 218
>UNIPROTKB|F1MVN3 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484 CTD:54845
GeneTree:ENSGT00620000087828 KO:K14947 OMA:VAAMTEC
EMBL:DAAA02039465 IPI:IPI00913393 RefSeq:NP_001179931.1
UniGene:Bt.62027 Ensembl:ENSBTAT00000037192 GeneID:538640
KEGG:bta:538640 NextBio:20877490 Uniprot:F1MVN3
Length = 677
Score = 213 (80.0 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 59/175 (33%), Positives = 96/175 (54%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 257 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGSRYIEVYKATGEDFLK--------I 308
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A D+++ FF ++ I
Sbjct: 309 AGGTSNE-VAQFLS----KENQV---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGIL 360
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 213 (80.0 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 58/182 (31%), Positives = 98/182 (53%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVL-NRFS 417
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVH-TGI---LRLRGLPFSAGKDDIMDFFKDFV--LS 134
+P +P V T I +RLRGLP++A +DI+DF +F +
Sbjct: 418 S----APLIPLPTPPIIPVLPQQFVPPTNIRDCIRLRGLPYAATIEDILDFLGEFSTDIR 473
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALS 193
+H+ +N GRP+G+AF++ +A+ + A K + T+ RY+E+F S EEM+ L
Sbjct: 474 THGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLM 533
Query: 194 RG 195
G
Sbjct: 534 GG 535
Score = 143 (55.4 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ E+
Sbjct: 286 HKHHMGSRYIEVYKATGED 304
>RGD|1560481 [details] [associations]
symbol:Esrp1 "epithelial splicing regulatory protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISO;ISS] [GO:0005886 "plasma
membrane" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA;ISO;ISS] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1560481
GO:GO:0005886 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
EMBL:AABR03040708 EMBL:AABR03042124 EMBL:BC166735 IPI:IPI00929919
IPI:IPI00948834 RefSeq:NP_001121036.2 UniGene:Rn.161971
Ensembl:ENSRNOT00000067129 GeneID:500409 KEGG:rno:500409
UCSC:RGD:1560481 NextBio:706112 ArrayExpress:B2RYD2
Genevestigator:B2RYD2 Uniprot:B2RYD2
Length = 677
Score = 213 (80.0 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 57/182 (31%), Positives = 98/182 (53%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVL-NRFS 417
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVH-TGI---LRLRGLPFSAGKDDIMDFFKDFV--LS 134
+P +P A V T + +RLRGLP++A +DI+DF +F +
Sbjct: 418 S----APLIPLPTAPIIPVLPQQFVPPTNVRDCVRLRGLPYAATIEDILDFLGEFSTDIR 473
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EEM+ L
Sbjct: 474 THGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLM 533
Query: 194 RG 195
G
Sbjct: 534 GG 535
Score = 209 (78.6 bits), Expect = 6.2e-16, P = 6.2e-16
Identities = 58/175 (33%), Positives = 96/175 (54%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 257 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 308
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A ++++ FF ++ I
Sbjct: 309 AGGTSNE-VAQFLS----KENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 142 (55.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 132
A+ +E + R P R + +S K + ++R RGLP+ + DI FFK
Sbjct: 190 AMISEPYNHRFSDPERVNYKFESGTCSKTELIDGNTVVRARGLPWQSSDQDIARFFKGLN 249
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 250 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
>UNIPROTKB|G3N1Y9 [details] [associations]
symbol:G3N1Y9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
EMBL:DAAA02057210 Ensembl:ENSBTAT00000065958 Uniprot:G3N1Y9
Length = 426
Score = 156 (60.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLS-EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
+ ++R LP+S D++ FF + + I +GR +G+AFVE + ++ K A+
Sbjct: 11 VAKVRSLPWSCSADEVQQFFDCKIQNGAQGIRFIYTREGRQSGKAFVELESEDEVKVALK 70
Query: 168 KDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RYIE+F S++ +MD L
Sbjct: 71 KDRETMGPRYIEVFKSNNADMDWVL 95
Score = 149 (57.5 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RL GLPF K++++ FF + + I + ++ R TGEAFV FA+ E ++ A+
Sbjct: 109 GFVRLSGLPFGCSKEEMVQFFAGLEIVPNGITLQVDMQRRSTGEAFVWFASQEIAEMALK 168
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RY+ +F SS E+
Sbjct: 169 KHKERIGRRYMGIFKSSRAEV 189
Score = 94 (38.1 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+H T +GR TGEA VEFA ED+ AA +KD+ + Y ELF S+
Sbjct: 305 VH-TETGNGRVTGEADVEFATHEDAVAATSKDKANMHHMY-ELFDSA 349
Score = 83 (34.3 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +G+AF L +V AL+++R+ MG RY+EVF+S +
Sbjct: 41 IRFIYTREGRQSGKAFVELESEDEVKVALKKDRETMGPRYIEVFKSNNAD 90
Score = 81 (33.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L V + TGEAF + AL+++++ +GRRY+ +F+S R E
Sbjct: 141 LQVDMQRRSTGEAFVWFASQEIAEMALKKHKERIGRRYMGIFKSSRAE 188
>UNIPROTKB|F1LP81 [details] [associations]
symbol:Esrp1 "Epithelial-splicing regulatory protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1560481
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 IPI:IPI00558323
Ensembl:ENSRNOT00000010846 ArrayExpress:F1LP81 Uniprot:F1LP81
Length = 681
Score = 213 (80.0 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 57/182 (31%), Positives = 98/182 (53%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVL-NRFS 417
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVH-TGI---LRLRGLPFSAGKDDIMDFFKDFV--LS 134
+P +P A V T + +RLRGLP++A +DI+DF +F +
Sbjct: 418 S----APLIPLPTAPIIPVLPQQFVPPTNVRDCVRLRGLPYAATIEDILDFLGEFSTDIR 473
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EEM+ L
Sbjct: 474 THGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLM 533
Query: 194 RG 195
G
Sbjct: 534 GG 535
Score = 209 (78.6 bits), Expect = 6.3e-16, P = 6.3e-16
Identities = 58/175 (33%), Positives = 96/175 (54%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 257 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 308
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A ++++ FF ++ I
Sbjct: 309 AGGTSNE-VAQFLS----KENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 142 (55.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 132
A+ +E + R P R + +S K + ++R RGLP+ + DI FFK
Sbjct: 190 AMISEPYNHRFSDPERVNYKFESGTCSKTELIDGNTVVRARGLPWQSSDQDIARFFKGLN 249
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 250 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
>UNIPROTKB|F1RY52 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 OMA:VAAMTEC EMBL:CU468309
Ensembl:ENSSSCT00000006690 Uniprot:F1RY52
Length = 711
Score = 213 (80.0 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 59/175 (33%), Positives = 96/175 (54%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 287 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 338
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A D+++ FF ++ I
Sbjct: 339 AGGTSNE-VAQFLS----KENQV---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGIL 390
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 391 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 445
Score = 212 (79.7 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 56/178 (31%), Positives = 94/178 (52%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + S
Sbjct: 389 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 448
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
P I + V I RLRGLP++A +DI+DF +F + +
Sbjct: 449 APLIPLPTPPIIPVLPQQFVTPTNVRDCI-RLRGLPYAATIEDILDFLGEFSTDIRTHGV 507
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + A K + T+ RY+E+F S EEM+ L G
Sbjct: 508 HMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 565
Score = 140 (54.3 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 256 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 315
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 316 HKHHMGTRYIEVYKATGED 334
>ZFIN|ZDB-GENE-081022-16 [details] [associations]
symbol:rbm12 "RNA binding motif protein 12"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-081022-16 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG057691 CTD:10137 HOGENOM:HOG000143525
EMBL:BC162102 EMBL:BC162473 EMBL:AY226101 IPI:IPI00483025
RefSeq:NP_001003856.1 UniGene:Dr.133225 SMR:Q6XLI5 GeneID:445379
KEGG:dre:445379 NextBio:20832083 Uniprot:Q6XLI5
Length = 876
Score = 214 (80.4 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 60/197 (30%), Positives = 102/197 (51%)
Query: 12 IHHQLMDI-----VDVLFVHKNN--KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 64
+ H++ D ++ + + K+N + +G A P + AL+RN +G+RY+EV
Sbjct: 314 LEHEIRDFFHGLGIESIRLLKDNLGRNSGRALVKFYSPHESFEALKRNAGMIGQRYIEVS 373
Query: 65 RSKRQEYYKAIANEVSDVRGGSPH-----RSI--PRAKSHDEGKDSAVHT--GILRLRGL 115
+ +++ +++ + S G S H RS P S + + + H + L+GL
Sbjct: 374 PATERQWRESVGH--SKAGGDSEHNRHRRRSANSPTPSSGERARSRSPHKLDYCVYLKGL 431
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
P+ A I +FFK+ + EDSI+I +GR TGE FVEF N D KAA+ +GS
Sbjct: 432 PYEAENKQIFEFFKNLDIVEDSIYIAYGPNGRATGEGFVEFRNEMDYKAALGCHMQYMGS 491
Query: 176 RYIELFPSSHEEMDEAL 192
R+I++ P + + M E +
Sbjct: 492 RFIQVHPITKKNMYEKI 508
Score = 134 (52.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 45/177 (25%), Positives = 80/177 (45%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N + TGE F + AL + Q MG R+++V ++ Y+
Sbjct: 447 LDIVEDSIYIAYGPNGRATGEGFVEFRNEMDYKAALGCHMQYMGSRFIQVHPITKKNMYE 506
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
I ++G + KS G SA + +P++ K D+ F L
Sbjct: 507 KIDAIRKRMQGSQGDQ-----KSSSGGGKSA--KSCAHITNIPYNVTKKDVRLFLDGIEL 559
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
E+S+ + ++S+G G+A V+F + ED+ A R L R + + ++M E
Sbjct: 560 FEESLKVLVDSNGNGLGQAIVQFKSDEDALKAERLHRQKLNGRDAFVHLVTFDQMKE 616
Score = 126 (49.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 28/87 (32%), Positives = 50/87 (57%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ L GLPFS + +I DFF L +SI + ++ GR +G A V+F + +S A+ ++
Sbjct: 304 VHLHGLPFSVLEHEIRDFFHG--LGIESIRLLKDNLGRNSGRALVKFYSPHESFEALKRN 361
Query: 170 RMTLGSRYIELFPSSHEEMDEALSRGR 196
+G RYIE+ P++ + E++ +
Sbjct: 362 AGMIGQRYIEVSPATERQWRESVGHSK 388
Score = 123 (48.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 29/88 (32%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
++ + L SS EM + R
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMQNMIELSR 87
>UNIPROTKB|H0YBR2 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 Ensembl:ENST00000519505
Uniprot:H0YBR2
Length = 502
Score = 209 (78.6 bits), Expect = 3.4e-16, P = 3.4e-16
Identities = 58/175 (33%), Positives = 96/175 (54%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 123 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 174
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A ++++ FF ++ I
Sbjct: 175 AGGTSNE-VAQFLS----KENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 226
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 227 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 281
Score = 209 (78.6 bits), Expect = 3.4e-16, P = 3.4e-16
Identities = 55/178 (30%), Positives = 93/178 (52%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + S
Sbjct: 225 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 284
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
P I + V I RLRGLP++A +DI+DF +F + +
Sbjct: 285 APLIPLPTPPIIPVLPQQFVPPTNVRDCI-RLRGLPYAATIEDILDFLGEFATDIRTHGV 343
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + A K + + RY+E+F S EEM+ L G
Sbjct: 344 HMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 401
Score = 141 (54.7 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 132
A+ +E + R P R + +S K + ++R RGLP+ + DI FFK
Sbjct: 56 AMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLN 115
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 116 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 170
>UNIPROTKB|H0YBB3 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 Ensembl:ENST00000517610
Bgee:H0YBB3 Uniprot:H0YBB3
Length = 522
Score = 209 (78.6 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 58/175 (33%), Positives = 96/175 (54%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 116 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 167
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A ++++ FF ++ I
Sbjct: 168 AGGTSNE-VAQFLS----KENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 219
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 220 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 274
Score = 209 (78.6 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 55/178 (30%), Positives = 93/178 (52%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + S
Sbjct: 218 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 277
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
P I + V I RLRGLP++A +DI+DF +F + +
Sbjct: 278 APLIPLPTPPIIPVLPQQFVPPTNVRDCI-RLRGLPYAATIEDILDFLGEFATDIRTHGV 336
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + A K + + RY+E+F S EEM+ L G
Sbjct: 337 HMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 394
Score = 141 (54.7 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 132
A+ +E + R P R + +S K + ++R RGLP+ + DI FFK
Sbjct: 49 AMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLN 108
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 109 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 163
>MGI|MGI:1917326 [details] [associations]
symbol:Esrp1 "epithelial splicing regulatory protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917326 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:CH466538 SUPFAM:SSF53098 GO:GO:0043484
EMBL:AL772170 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K14947 EMBL:AK042164 EMBL:AK140848
EMBL:AK166376 EMBL:BC031468 EMBL:BC059280 IPI:IPI00377935
IPI:IPI00649037 IPI:IPI00828247 IPI:IPI00828788 IPI:IPI01027663
RefSeq:NP_918944.2 UniGene:Mm.387719 HSSP:Q9Z2X1
ProteinModelPortal:Q3US41 SMR:Q3US41 STRING:Q3US41 PaxDb:Q3US41
PRIDE:Q3US41 Ensembl:ENSMUST00000043781 Ensembl:ENSMUST00000108310
Ensembl:ENSMUST00000108313 Ensembl:ENSMUST00000147342
Ensembl:ENSMUST00000155519 GeneID:207920 KEGG:mmu:207920
UCSC:uc008rzk.2 UCSC:uc008rzl.2 UCSC:uc008rzm.2 UCSC:uc008rzn.1
InParanoid:Q3US41 NextBio:372085 Bgee:Q3US41 CleanEx:MM_RBM35A
Genevestigator:Q3US41 Uniprot:Q3US41
Length = 680
Score = 211 (79.3 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 55/178 (30%), Positives = 94/178 (52%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + S
Sbjct: 358 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNRFSS 417
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
P I + V I RLRGLP++A +DI+DF +F + +
Sbjct: 418 APLIPLPTPPIIPVLPQQFVPPTNVRDCI-RLRGLPYAATIEDILDFLGEFSTDIRTHGV 476
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EEM+ L G
Sbjct: 477 HMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 534
Score = 210 (79.0 bits), Expect = 4.9e-16, P = 4.9e-16
Identities = 58/175 (33%), Positives = 96/175 (54%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 256 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 307
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A ++++ FF ++ I
Sbjct: 308 AGGTSNE-VAQFLS----KENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 359
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 360 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNR 414
Score = 140 (54.3 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 285 HKHHMGTRYIEVYKATGED 303
>UNIPROTKB|E1BMP6 [details] [associations]
symbol:E1BMP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
EMBL:DAAA02072842 IPI:IPI00699769 ProteinModelPortal:E1BMP6
Ensembl:ENSBTAT00000027332 Uniprot:E1BMP6
Length = 415
Score = 162 (62.1 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF +DI+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+
Sbjct: 113 GFVRLRGLPFGC-TEDIIQFFSGLEIMPNRITLPVDPEGKTTGEAFVQFASQELAEKALG 171
Query: 168 KDRMTL-GSRYIELFPSSHE 186
K++ + G RYIE+F SS E
Sbjct: 172 KNKKRIIGHRYIEVFNSSQE 191
Score = 151 (58.2 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + +RGLP+ A ++DI +F +L+ +HI + DGR T EA VEFA E++ A
Sbjct: 289 TGHCVHMRGLPYKATENDIYNFS---LLNPVRVHIEIGPDGRVTSEADVEFATHEEAMVA 345
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+K+R + RYIELF +S
Sbjct: 346 MSKNRANMQHRYIELFLNS 364
Score = 133 (51.9 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 29/89 (32%), Positives = 53/89 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEA---FVEFANAEDSK 163
+++L GLP+S D+ +F + ++ + +H +++GR +GE F+E ++D K
Sbjct: 12 LVKLHGLPWSCSVKDVQNFLSNCMIRDGVTCVHFIYSTEGRQSGELHQLFLEL-QSDDVK 70
Query: 164 AAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
A+ KDR+++G YIE+F S EM+ L
Sbjct: 71 MALKKDRVSMGHWYIEVFKSHRTEMELVL 99
Score = 71 (30.1 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNM-GRRYVEVFRSKRQ 69
V K TGEAF + AL +N++ + G RY+EVF S ++
Sbjct: 146 VDPEGKTTGEAFVQFASQELAEKALGKNKKRIIGHRYIEVFNSSQE 191
Score = 66 (28.3 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQE 70
V AL+++R +MG Y+EVF+S R E
Sbjct: 69 VKMALKKDRVSMGHWYIEVFKSHRTE 94
>UNIPROTKB|Q6NXG1 [details] [associations]
symbol:ESRP1 "Epithelial splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005886
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GO:GO:0043484 CTD:54845 eggNOG:NOG262593 KO:K14947 EMBL:BX647570
EMBL:AC108860 EMBL:AP005660 EMBL:BC019932 EMBL:BC067098
EMBL:BC099916 EMBL:BC112043 EMBL:AK000178 IPI:IPI00184262
IPI:IPI00654821 IPI:IPI00789651 IPI:IPI00797684 IPI:IPI00889741
RefSeq:NP_001030087.2 RefSeq:NP_001116297.1 RefSeq:NP_001116298.1
RefSeq:NP_001116299.1 RefSeq:NP_060167.2 UniGene:Hs.487471 PDB:2DHA
PDBsum:2DHA ProteinModelPortal:Q6NXG1 SMR:Q6NXG1 STRING:Q6NXG1
PhosphoSite:Q6NXG1 DMDM:124020999 PaxDb:Q6NXG1 PRIDE:Q6NXG1
Ensembl:ENST00000358397 Ensembl:ENST00000423620
Ensembl:ENST00000433389 Ensembl:ENST00000454170 GeneID:54845
KEGG:hsa:54845 UCSC:uc003ygq.4 UCSC:uc003ygr.4 UCSC:uc003ygt.4
UCSC:uc003ygv.3 GeneCards:GC08P095653 HGNC:HGNC:25966 HPA:HPA023719
HPA:HPA023720 MIM:612959 neXtProt:NX_Q6NXG1 PharmGKB:PA164719324
InParanoid:Q6NXG1 OMA:VAAMTEC ChiTaRS:ESRP1
EvolutionaryTrace:Q6NXG1 GenomeRNAi:54845 NextBio:57677
ArrayExpress:Q6NXG1 Bgee:Q6NXG1 CleanEx:HS_RBM35A
Genevestigator:Q6NXG1 Uniprot:Q6NXG1
Length = 681
Score = 209 (78.6 bits), Expect = 6.3e-16, P = 6.3e-16
Identities = 58/175 (33%), Positives = 96/175 (54%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 257 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 308
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + + S K++ V I+R+RGLPF+A ++++ FF ++ I
Sbjct: 309 AGGTSNE-VAQFLS----KENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 209 (78.6 bits), Expect = 6.3e-16, P = 6.3e-16
Identities = 55/178 (30%), Positives = 93/178 (52%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 418
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
P I + V I RLRGLP++A +DI+DF +F + +
Sbjct: 419 APLIPLPTPPIIPVLPQQFVPPTNVRDCI-RLRGLPYAATIEDILDFLGEFATDIRTHGV 477
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + A K + + RY+E+F S EEM+ L G
Sbjct: 478 HMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 141 (54.7 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 132
A+ +E + R P R + +S K + ++R RGLP+ + DI FFK
Sbjct: 190 AMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLN 249
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 250 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
>WB|WBGene00020936 [details] [associations]
symbol:hrpf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:FO081084 GeneID:172395 KEGG:cel:CELE_W02D3.11 CTD:172395
RefSeq:NP_740877.1 ProteinModelPortal:Q9BIB7 SMR:Q9BIB7
DIP:DIP-24897N IntAct:Q9BIB7 MINT:MINT-1090704 STRING:Q9BIB7
PRIDE:Q9BIB7 EnsemblMetazoa:W02D3.11a.1 EnsemblMetazoa:W02D3.11a.2
UCSC:W02D3.11b WormBase:W02D3.11a HOGENOM:HOG000017293
InParanoid:Q9BIB7 OMA:EPYAQRE NextBio:875329 ArrayExpress:Q9BIB7
Uniprot:Q9BIB7
Length = 549
Score = 207 (77.9 bits), Expect = 6.9e-16, P = 6.9e-16
Identities = 56/167 (33%), Positives = 84/167 (50%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
+N + +G+A V + AL+++R+++G RY+EVF + + E D RG
Sbjct: 38 RNGRTSGDAKVVFTNEEDYNNALKKDREHLGSRYIEVFPAGGAPTRRGDRGERGD-RGDR 96
Query: 87 PH-RSI---PRAKSHDEGKD-SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141
H RS PR + D G S+ I+RLRGLPFS DI DF + D I +
Sbjct: 97 DHYRSRGAPPRDRYSDRGGPRSSGPDSIVRLRGLPFSVTSRDISDFLAPLPIVRDGILLP 156
Query: 142 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
RP GEA+V F E + A + +G RYIE+F ++H ++
Sbjct: 157 DQQRARPGGEAYVCFETMESVQIAKQRHMKNIGHRYIEVFEATHRDL 203
Score = 141 (54.7 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 32/74 (43%), Positives = 48/74 (64%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++ RGLP+ A + ++ DFF + + +S+ I + GR +G+A V F N ED A+ KD
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGI--ESLEIPRRN-GRTSGDAKVVFTNEEDYNNALKKD 63
Query: 170 RMTLGSRYIELFPS 183
R LGSRYIE+FP+
Sbjct: 64 REHLGSRYIEVFPA 77
Score = 140 (54.3 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD-GRPTGEA 152
++ D G H +LR+RG+PF A + D+ DFF + + + + + RP+G+A
Sbjct: 458 SRDRDYGAPQNQHF-VLRMRGVPFRASEADVYDFFHP--IRPNQVELLRDHQFQRPSGDA 514
Query: 153 FVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
V F N +D A+ KD+ +G RYIE+ P +
Sbjct: 515 RVIFYNRKDYDDALMKDKQYMGERYIEMIPDN 546
>ZFIN|ZDB-GENE-030131-9824 [details] [associations]
symbol:esrp2 "epithelial splicing regulatory
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0043484 "regulation of RNA
splicing" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-9824 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 eggNOG:NOG262593 HOGENOM:HOG000112401 KO:K14947
OrthoDB:EOG42RD72 HSSP:Q9Z2X1 CTD:80004 EMBL:BC045439 EMBL:BC065688
IPI:IPI00488983 IPI:IPI00769676 RefSeq:NP_954966.1 UniGene:Dr.200
ProteinModelPortal:Q7ZVR8 SMR:Q7ZVR8 STRING:Q7ZVR8 PRIDE:Q7ZVR8
GeneID:572992 KEGG:dre:572992 InParanoid:Q7ZVR8 NextBio:20891026
Uniprot:Q7ZVR8
Length = 736
Score = 205 (77.2 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 53/183 (28%), Positives = 94/183 (51%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++Q +G+RY+E+FRS E + + +S
Sbjct: 358 LLFVKYPDGRPTGDAFVLFACEEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNRYMS 417
Query: 81 D-VRGGSPHRSIPRAKSHDEGKDSAVHTG----ILRLRGLPFSAGKDDIMDFFKDFVLS- 134
+ P P + TG +RLRGLP++A +DI++F + +
Sbjct: 418 TPLISTLPPPPPPMVSVPVLATPPFITTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDI 477
Query: 135 -EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEAL 192
+H+ +N GRP+G+AF++ +A+ + K + + RY+E+F S EEM L
Sbjct: 478 KPHGVHMVLNQQGRPSGDAFIQMKSADRAFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVL 537
Query: 193 SRG 195
G
Sbjct: 538 MGG 540
Score = 202 (76.2 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 52/152 (34%), Positives = 89/152 (58%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL R++ +MG RY+EV+++ +E+ K + GG+ + + + S K++ +
Sbjct: 279 DMALDRHKHHMGSRYIEVYKATGEEFLK--------IAGGTSNE-VAQFLS----KENQM 325
Query: 106 HTGILRLRGLPFSAGKDDIMDFF-KDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A D++ F + +++ + + DGRPTG+AFV FA E +
Sbjct: 326 ---IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYA 382
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 383 QNALKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 158 (60.7 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
A S E DS ++R RGLP+ + DI FFK +++ + + +N+ GR GEA
Sbjct: 213 ACSKTEAVDSET---VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEAL 269
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
V F N+E A+ + + +GSRYIE++ ++ EE
Sbjct: 270 VRFINSEHRDMALDRHKHHMGSRYIEVYKATGEE 303
Score = 121 (47.7 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 22/60 (36%), Positives = 41/60 (68%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R++GLP++AG DI+ FF+ + L DS+ + N G+ +GEA V F + + ++ A+A+
Sbjct: 660 LVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRAVAE 719
Score = 47 (21.6 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 15/66 (22%), Positives = 32/66 (48%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ +++ + +G+AF + + Q+ +++ M RYVEVF+ +E + +
Sbjct: 484 MVLNQQGRPSGDAFIQMKSADRAFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVLMGGTLN 543
Query: 82 VRGGSP 87
G SP
Sbjct: 544 RSGLSP 549
>UNIPROTKB|I3LFQ0 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087736 EMBL:FP476068
Ensembl:ENSSSCT00000027886 OMA:NDIANXH Uniprot:I3LFQ0
Length = 216
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
H+ D++ G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+F
Sbjct: 7 HNGPNDAS--DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQF 64
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 65 ASKEIAENALGKHKERIGHRYIEIFRSSRSEI 96
>UNIPROTKB|F1NNR6 [details] [associations]
symbol:LOC100858337 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:AADN02019509 EMBL:AADN02019510 IPI:IPI00571732
Ensembl:ENSGALT00000002400 Uniprot:F1NNR6
Length = 868
Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 63/190 (33%), Positives = 95/190 (50%)
Query: 17 MDIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
+D + +L H +NN G P AL+RNR M +RYVEV + +++ A
Sbjct: 329 VDAIHMLKDHVGRNN---GNGLVKFFSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAA 385
Query: 75 IAN-EVSDVRG--GSPHRSIP----RAKSHDEGKDS---AVHT-GI-LRLRGLPFSAGKD 122
+ G G PH P R+KS K S + H G + L+GLPF +
Sbjct: 386 GGHITFKQTMGPSGQPHPPPPQPHSRSKSPSGQKRSRSRSPHEQGFCVYLKGLPFESENK 445
Query: 123 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182
++DFFK + EDSI+I +G+ GE FVEF N D KAA+ + +G+R+I++ P
Sbjct: 446 HVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHHKQYIGNRFIQVHP 505
Query: 183 SSHEEMDEAL 192
+ + M E +
Sbjct: 506 ITKKAMLEKI 515
Score = 128 (50.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 25/76 (32%), Positives = 46/76 (60%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+ G+PFSA + D+ +FF L D+IH+ + GR G V+F + +D+ A+ ++RM
Sbjct: 308 IHGMPFSATESDVKEFFLG--LRVDAIHMLKDHVGRNNGNGLVKFFSPQDTFEALKRNRM 365
Query: 172 TLGSRYIELFPSSHEE 187
+ RY+E+ P++ +
Sbjct: 366 LMIQRYVEVSPATERQ 381
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
Identities = 40/176 (22%), Positives = 83/176 (47%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K GE F AL ++Q +G R+++V + K
Sbjct: 454 LDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITK----K 509
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGK-DSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
A+ ++ +R + + + + + +S + +P++ K +I+ F +
Sbjct: 510 AMLEKIDLIRKRLQNFNYDQREIIMNAEAESGSPKLCAHISNIPYNITKMEILQFLEGLA 569
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ E+S+ I ++++G+ G+A V+F +D++ A R L R + L + EEM
Sbjct: 570 VEENSVQILVDNNGQGLGQALVQFKAEDDARKAERLHRKKLNGRDVVLRLITVEEM 625
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 85 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 144
G+ H S P GK +++++ +PF+ D+I+DFF + + S+ + N
Sbjct: 784 GNIHISGPPGFGTGSGKPGPT---VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNE 840
Query: 145 DGRPTGEAFVEFANAEDSKAAM 166
G PTGEA V F + +++ AA+
Sbjct: 841 KGMPTGEAMVAFESRDEAMAAV 862
>WB|WBGene00006367 [details] [associations]
symbol:sym-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0010172 "embryonic body morphogenesis"
evidence=IGI] [GO:0050879 "multicellular organismal movement"
evidence=IGI] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GO:GO:0010172 eggNOG:NOG262593 GeneTree:ENSGT00620000087828
KO:K14947 HSSP:P55795 EMBL:Z68319 EMBL:Z70038 EMBL:AY220985
PIR:T25208 RefSeq:NP_495960.2 UniGene:Cel.5905
ProteinModelPortal:Q22708 SMR:Q22708 IntAct:Q22708 STRING:Q22708
PaxDb:Q22708 EnsemblMetazoa:ZK1067.6 GeneID:174461
KEGG:cel:CELE_ZK1067.6 UCSC:ZK1067.6 CTD:174461 WormBase:ZK1067.6
HOGENOM:HOG000154473 InParanoid:Q22708 OMA:VENVMFT NextBio:884134
GO:GO:0050879 Uniprot:Q22708
Length = 618
Score = 200 (75.5 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 51/150 (34%), Positives = 80/150 (53%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 104
V F+ Q +R +R+ S+ E YKA +E V GS ++ ++ A
Sbjct: 227 VQFSSQESRDLALKRHRNFLLSRYIEVYKAGLDEFMHVATGSSTEAMEFVSAN------A 280
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
+ I+R+RGLP+ I FF+ L++ + IT +DGRPTG+AFV+F ED++
Sbjct: 281 I---IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFIT-RTDGRPTGDAFVQFETEEDAQQ 336
Query: 165 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ K R +G RYIELF S+ E+ + + R
Sbjct: 337 GLLKHRQVIGQRYIELFKSTAAEVQQVVKR 366
Score = 193 (73.0 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 54/177 (30%), Positives = 95/177 (53%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LF+ + + + TG+AF L ++RQ +G+RY+E+F+S E + +
Sbjct: 310 ILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKR--C 367
Query: 81 DVRGGSPHRSIPRA-KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDS 137
++ SP ++ A ++ +E K V RLRGLP+ A I+ F DF ++
Sbjct: 368 NLINSSP--AVANAVEAPEEKKKDCV-----RLRGLPYEATVQHIVTFLGDFATMVKFQG 420
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMA---KDRMTLGS--RYIELFPSSHEEMD 189
+H+ N+ G P+GEAF++ N + + A A + M++G RYIE+F +S EE++
Sbjct: 421 VHMVYNNQGHPSGEAFIQMINEQAASACAAGVHNNFMSVGKKKRYIEVFQASAEELN 477
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/100 (29%), Positives = 50/100 (50%)
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
++ P + + G D + R RGLP+ A + FF + I + ++S+GR
Sbjct: 163 YQPAPILEDQEVGADG--DNVVCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGR 220
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
GE V+F++ E A+ + R L SRYIE++ + +E
Sbjct: 221 RNGEVLVQFSSQESRDLALKRHRNFLLSRYIEVYKAGLDE 260
>FB|FBgn0023441 [details] [associations]
symbol:fus "fusilli" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007173 "epidermal
growth factor receptor signaling pathway" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0005634
GO:GO:0007173 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043484 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K14947 HSSP:P55795 EMBL:AF321979
EMBL:BT025963 EMBL:BT003299 EMBL:BT023793 EMBL:AY052064
RefSeq:NP_524691.1 RefSeq:NP_725479.1 RefSeq:NP_725480.1
RefSeq:NP_725481.1 RefSeq:NP_725482.1 RefSeq:NP_725483.1
UniGene:Dm.7727 ProteinModelPortal:Q9BJZ5 SMR:Q9BJZ5
MINT:MINT-1023688 STRING:Q9BJZ5 PRIDE:Q9BJZ5
EnsemblMetazoa:FBtr0087343 EnsemblMetazoa:FBtr0087344
EnsemblMetazoa:FBtr0087346 GeneID:44095 KEGG:dme:Dmel_CG8205
UCSC:CG8205-RD CTD:2521 FlyBase:FBgn0023441 InParanoid:A1ZA30
OMA:KFRYIEV OrthoDB:EOG4866TJ PhylomeDB:Q9BJZ5 ChiTaRS:FUS
GenomeRNAi:44095 NextBio:836730 Bgee:Q9BJZ5 Uniprot:Q9BJZ5
Length = 967
Score = 200 (75.5 bits), Expect = 9.8e-15, P = 9.8e-15
Identities = 55/156 (35%), Positives = 88/156 (56%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG+ + A++ K + V
Sbjct: 334 DMALKRHKHHIGTRYIEVYRASGEDFL-AIA-------GGASNE----AQAF-LSKGAQV 380
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLS-EDSIHITMNSDGRPTGEAFVEFAN 158
I+R+RGLP+ A ++DFF VL + + DGR TG+AFV FAN
Sbjct: 381 ---IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAN 437
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 438 ETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 141 (54.7 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
Identities = 34/94 (36%), Positives = 55/94 (58%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
+RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++ + E+S A
Sbjct: 548 IRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCA 606
Query: 168 KDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
+ R M G RYIE+F S ++M+ L+ G
Sbjct: 607 QRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 640
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F E A+ +
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ +S E+
Sbjct: 340 HKHHIGTRYIEVYRASGED 358
Score = 99 (39.9 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + + +
Sbjct: 417 VLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD 476
Query: 81 --DVRGGSPHRSIP 92
+ G H P
Sbjct: 477 PKNYESGGGHSQPP 490
>ZFIN|ZDB-GENE-070112-1732 [details] [associations]
symbol:esrp1 "epithelial splicing regulatory
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070112-1732 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 EMBL:BC129044 EMBL:BC134218 IPI:IPI00829273
RefSeq:NP_001074045.1 UniGene:Dr.13001 ProteinModelPortal:A1L1G1
SMR:A1L1G1 STRING:A1L1G1 Ensembl:ENSDART00000103431 GeneID:560190
KEGG:dre:560190 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 InParanoid:A4FVM7
KO:K14947 OMA:HIRQVIH OrthoDB:EOG42RD72 NextBio:20883322
Bgee:A1L1G1 Uniprot:A1L1G1
Length = 714
Score = 199 (75.1 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 55/175 (31%), Positives = 93/175 (53%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 257 LCLNAQGRRNGEALVRFESEEHRDLALQRHKHHMGGRYIEVYKATGEDFLK--------I 308
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS---IH 139
GG+ + + S +++ + I+R+RGLPF+A + ++ FF D I
Sbjct: 309 AGGTSNE-VASFLS----RENQI---IVRMRGLPFNATAEQVLQFFSPACPVTDGSEGIL 360
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV F+ E ++ A+ K + LG RYIELF S+ E+ + L++
Sbjct: 361 FVRFPDGRPTGDAFVLFSCEEHAQNALKKHKDMLGKRYIELFKSTAAEVQQVLNK 415
Score = 196 (74.1 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 54/185 (29%), Positives = 97/185 (52%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + TG+AF + AL++++ +G+RY+E+F+S E + + N+ S
Sbjct: 359 ILFVRFPDGRPTGDAFVLFSCEEHAQNALKKHKDMLGKRYIELFKSTAAEVQQVL-NKYS 417
Query: 81 DVR----GGSPHRSIPRAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFV- 132
SP S+ + +A G+ +RLRGLP+ A DI+ F ++
Sbjct: 418 SAPLIPVAPSPILSVVAPPTFVP--QTAAVPGVRDCVRLRGLPYDASIQDILVFLGEYGA 475
Query: 133 -LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ +H+ +N GRP+GEAF++ +AE + AA + ++ RY+E+F S +E++
Sbjct: 476 DIKTHGVHMVLNHQGRPSGEAFIQMRSAERAFLAAQRCHKRSMKERYVEVFACSAQEVNI 535
Query: 191 ALSRG 195
L G
Sbjct: 536 VLMGG 540
Score = 136 (52.9 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FF+ +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ E+
Sbjct: 286 HKHHMGGRYIEVYKATGED 304
>UNIPROTKB|E1BB17 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087736 OMA:PYDRPLG
EMBL:DAAA02061815 IPI:IPI00696173 ProteinModelPortal:E1BB17
SMR:E1BB17 PRIDE:E1BB17 Ensembl:ENSBTAT00000019039 Uniprot:E1BB17
Length = 346
Score = 192 (72.6 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
H+ D++ G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+F
Sbjct: 7 HNGPNDAS--DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQF 64
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 65 ASKEIAENALGKHKERIGHRYIEIFRSSRSEI 96
Score = 179 (68.1 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
>UNIPROTKB|F1P8D3 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OMA:PYDRPLG
EMBL:AAEX03002774 RefSeq:XP_536369.2 ProteinModelPortal:F1P8D3
Ensembl:ENSCAFT00000000525 GeneID:479227 KEGG:cfa:479227
Uniprot:F1P8D3
Length = 346
Score = 192 (72.6 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
H+ D++ G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+F
Sbjct: 7 HNGPNDAS--DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQF 64
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 65 ASKEIAENALGKHKERIGHRYIEIFRSSRSEI 96
Score = 179 (68.1 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
>UNIPROTKB|P31942 [details] [associations]
symbol:HNRNPH3 "Heterogeneous nuclear ribonucleoprotein H3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG262593 HOVERGEN:HBG055557 KO:K12898 EMBL:L32610
EMBL:AF132360 EMBL:AF132361 EMBL:AF132362 EMBL:AF132363
EMBL:AF132364 EMBL:AK091411 EMBL:AK291547 EMBL:AL117395
EMBL:BC004511 EMBL:BC039824 IPI:IPI00013877 IPI:IPI00216492
IPI:IPI00216493 IPI:IPI00216494 IPI:IPI00216495 IPI:IPI00216496
PIR:T17207 RefSeq:NP_036339.1 RefSeq:NP_067676.2 UniGene:Hs.643472
ProteinModelPortal:P31942 SMR:P31942 IntAct:P31942
MINT:MINT-5004191 STRING:P31942 PhosphoSite:P31942 DMDM:23503095
PaxDb:P31942 PRIDE:P31942 Ensembl:ENST00000265866
Ensembl:ENST00000354695 GeneID:3189 KEGG:hsa:3189 UCSC:uc001jnw.4
UCSC:uc001jnx.4 CTD:3189 GeneCards:GC10P070090 HGNC:HGNC:5043
HPA:HPA038264 MIM:602324 neXtProt:NX_P31942 PharmGKB:PA162391325
InParanoid:P31942 OMA:PYDRPLG OrthoDB:EOG49P9ZV PhylomeDB:P31942
ChiTaRS:HNRNPH3 GenomeRNAi:3189 NextBio:12680 ArrayExpress:P31942
Bgee:P31942 CleanEx:HS_HNRNPH3 Genevestigator:P31942
GermOnline:ENSG00000096746 Uniprot:P31942
Length = 346
Score = 192 (72.6 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
H+ D++ G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+F
Sbjct: 7 HNGPNDAS--DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQF 64
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 65 ASKEIAENALGKHKERIGHRYIEIFRSSRSEI 96
Score = 179 (68.1 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
>RGD|1310019 [details] [associations]
symbol:Hnrnph3 "heterogeneous nuclear ribonucleoprotein H3
(2H9)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:1310019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 EMBL:CH473988
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OrthoDB:EOG49P9ZV
IPI:IPI00372854 RefSeq:NP_001102002.1 UniGene:Rn.60652 SMR:D4ABK7
Ensembl:ENSRNOT00000032600 GeneID:361838 KEGG:rno:361838
UCSC:RGD:1310019 NextBio:677788 Uniprot:D4ABK7
Length = 346
Score = 192 (72.6 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
H+ D++ G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+F
Sbjct: 7 HNGPNDAS--DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQF 64
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 65 ASKEIAENALGKHKERIGHRYIEIFRSSRSEI 96
Score = 179 (68.1 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
>UNIPROTKB|E5RGV0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00974526
ProteinModelPortal:E5RGV0 SMR:E5RGV0 Ensembl:ENST00000519056
ArrayExpress:E5RGV0 Bgee:E5RGV0 Uniprot:E5RGV0
Length = 155
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 54 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 112
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ K + +G RYIE+F SS E+
Sbjct: 113 AEKALKKHKERIGHRYIEIFKSSRAEV 139
>UNIPROTKB|D6R9T0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00964846
ProteinModelPortal:D6R9T0 SMR:D6R9T0 Ensembl:ENST00000510431
HOGENOM:HOG000134241 ArrayExpress:D6R9T0 Bgee:D6R9T0 Uniprot:D6R9T0
Length = 162
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 92 (37.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 76 (31.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
D+A + G +RLRGLPF K++I+ FF + S ++ + +
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGILKSLRAVELKL 145
>UNIPROTKB|D6RDU3 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00968132
ProteinModelPortal:D6RDU3 SMR:D6RDU3 Ensembl:ENST00000506721
ArrayExpress:D6RDU3 Bgee:D6RDU3 Uniprot:D6RDU3
Length = 171
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 92 (37.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 76 (31.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
D+A + G +RLRGLPF K++I+ FF + S ++ + +
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGILKSLRAVELKL 145
>UNIPROTKB|D6RIH9 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00966018
ProteinModelPortal:D6RIH9 SMR:D6RIH9 Ensembl:ENST00000510678
ArrayExpress:D6RIH9 Bgee:D6RIH9 Uniprot:D6RIH9
Length = 184
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 92 (37.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 76 (31.8 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
D+A + G +RLRGLPF K++I+ FF + S ++ + +
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGILKSLRAVELKL 145
>UNIPROTKB|D6RJ04 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00963924
ProteinModelPortal:D6RJ04 SMR:D6RJ04 Ensembl:ENST00000508103
ArrayExpress:D6RJ04 Bgee:D6RJ04 Uniprot:D6RJ04
Length = 172
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 92 (37.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 76 (31.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
D+A + G +RLRGLPF K++I+ FF + S ++ + +
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGILKSLRAVELKL 145
>UNIPROTKB|D6RIT2 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
HOGENOM:HOG000134241 IPI:IPI00966932 ProteinModelPortal:D6RIT2
SMR:D6RIT2 Ensembl:ENST00000503105 ArrayExpress:D6RIT2 Bgee:D6RIT2
Uniprot:D6RIT2
Length = 164
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 92 (37.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 72 (30.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFF 128
D+A + G +RLRGLPF K++I+ FF
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFF 131
>UNIPROTKB|D6RAM1 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00967835
ProteinModelPortal:D6RAM1 SMR:D6RAM1 Ensembl:ENST00000515158
ArrayExpress:D6RAM1 Bgee:D6RAM1 Uniprot:D6RAM1
Length = 130
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 92 (37.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
Score = 66 (28.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDF 127
D+A + G +RLRGLPF K++I+ F
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQF 130
>UNIPROTKB|E7EQJ0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00977852
ProteinModelPortal:E7EQJ0 SMR:E7EQJ0 Ensembl:ENST00000521116
ArrayExpress:E7EQJ0 Bgee:E7EQJ0 Uniprot:E7EQJ0
Length = 115
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 92 (37.4 bits), Expect = 0.00028, P = 0.00028
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 92
>UNIPROTKB|I3L5T6 [details] [associations]
symbol:I3L5T6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:CU633293
Ensembl:ENSSSCT00000028833 Uniprot:I3L5T6
Length = 413
Score = 143 (55.4 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 33/87 (37%), Positives = 53/87 (60%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G + L+GL F K+ I+ FF + I + M+ +G+ TGEAFV+F + E
Sbjct: 105 DNA-NDGFVWLQGLLFGCTKEKIIQFFSGLEIMPIWITLPMDLEGKITGEAFVQFTSQEL 163
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ A+ + +G RYIE+F SS EE+
Sbjct: 164 AEKALGDRKERIGHRYIEVFKSSWEEV 190
Score = 115 (45.5 bits), Expect = 0.00015, P = 0.00015
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++L G+P+S +D+ +F + + IH +G + FVE + +D K A+
Sbjct: 12 VVKLCGVPWSCSFEDVQNFLSHCTIRGGAAGIHFICTREGGQN-DIFVELGSEDDVKMAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K+R ++G +Y E+F S EMD
Sbjct: 71 KKERGSMGHQYTEVFKSHRTEMD 93
Score = 80 (33.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + LRGL ++ ++DI FF L+ +H + DGR EFA E+ AA
Sbjct: 286 TGHCIHLRGL-YT--ENDIYSFFSS--LNPVRVHTGIGPDGR----VISEFAIHEEDMAA 336
Query: 166 MAKDRMTLGSRYIELFPSS 184
++K R Y+ELF +S
Sbjct: 337 ISKHRANKQQSYMELFLNS 355
Score = 76 (31.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 15 QLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++M I L + K TGEAF + AL ++ +G RY+EVF+S +E
Sbjct: 134 EIMPIWITLPMDLEGKITGEAFVQFTSQELAEKALGDRKERIGHRYIEVFKSSWEE 189
Score = 73 (30.8 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 34 EAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F LG V AL++ R +MG +Y EVF+S R E
Sbjct: 55 DIFVELGSEDDVKMALKKERGSMGHQYTEVFKSHRTE 91
>UNIPROTKB|E5RGH4 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00982782
ProteinModelPortal:E5RGH4 SMR:E5RGH4 Ensembl:ENST00000521790
ArrayExpress:E5RGH4 Bgee:E5RGH4 Uniprot:E5RGH4
Length = 100
Score = 143 (55.4 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 29 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 87
Query: 162 SKAAMAKDRMTLG 174
++ A+ K + +G
Sbjct: 88 AEKALKKHKERIG 100
Score = 51 (23.0 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 56 MGRRYVEVFRSKRQE 70
MG RYVEVF+S E
Sbjct: 1 MGHRYVEVFKSNNVE 15
>UNIPROTKB|G3MYE8 [details] [associations]
symbol:G3MYE8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
EMBL:DAAA02039421 Ensembl:ENSBTAT00000065600 OMA:EVPRRIM
Uniprot:G3MYE8
Length = 248
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 91 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 148
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 149 AVAAMSKDKNNMQHRYIELFLNS 171
>UNIPROTKB|B4DHY1 [details] [associations]
symbol:HNRNPH3 "cDNA FLJ57726, highly similar to
Heterogeneous nuclear ribonucleoprotein H3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
UniGene:Hs.643472 HGNC:HGNC:5043 ChiTaRS:HNRNPH3 EMBL:AC016395
EMBL:AK295316 IPI:IPI00908651 SMR:B4DHY1 STRING:B4DHY1
Ensembl:ENST00000441000 UCSC:uc010qiv.2 Uniprot:B4DHY1
Length = 238
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 81 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 138
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 139 AVAAMSKDKNNMQHRYIELFLNS 161
>UNIPROTKB|F5GZT4 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 IPI:IPI00983613
ProteinModelPortal:F5GZT4 SMR:F5GZT4 PRIDE:F5GZT4
Ensembl:ENST00000511300 UCSC:uc011dgn.2 ArrayExpress:F5GZT4
Bgee:F5GZT4 Uniprot:F5GZT4
Length = 159
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 8 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 65
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 66 ATHEDAVAAMSKDKANMQHRYVELFLNS 93
>UNIPROTKB|H0YBD7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
PRIDE:H0YBD7 Ensembl:ENST00000523921 Bgee:H0YBD7 Uniprot:H0YBD7
Length = 195
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 92 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 149
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 150 ATHEDAVAAMSKDKANMQHRYVELFLNS 177
>UNIPROTKB|H0YBG7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 PRIDE:H0YBG7
Ensembl:ENST00000519033 Bgee:H0YBG7 Uniprot:H0YBG7
Length = 185
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 34 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 91
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 92 ATHEDAVAAMSKDKANMQHRYVELFLNS 119
>FB|FBgn0259139 [details] [associations]
symbol:glo "glorund" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0006417
"regulation of translation" evidence=IMP;NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046427 "positive regulation of JAK-STAT cascade"
evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP] [GO:0043234
"protein complex" evidence=IPI] [GO:0060810 "intracellular mRNA
localization involved in pattern specification process"
evidence=IMP] [GO:0007311 "maternal specification of dorsal/ventral
axis, oocyte, germ-line encoded" evidence=IMP] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0042060 "wound healing" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0043234 GO:GO:0006417 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0042060 GO:GO:0046427
GO:GO:0051276 GO:GO:0045451 GO:GO:0007311
GeneTree:ENSGT00620000087828 KO:K12898 FlyBase:FBgn0259139
UniGene:Dm.4997 GeneID:41431 KEGG:dme:Dmel_CG6946 CTD:41431
GenomeRNAi:41431 NextBio:823816 EMBL:AY089465 RefSeq:NP_650120.1
RefSeq:NP_731639.1 SMR:Q9VGH5 IntAct:Q9VGH5 MINT:MINT-293245
STRING:Q9VGH5 EnsemblMetazoa:FBtr0089917 EnsemblMetazoa:FBtr0089919
UCSC:CG6946-RA InParanoid:Q9VGH5 OMA:NFGPIGG Uniprot:Q9VGH5
Length = 586
Score = 182 (69.1 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 47/145 (32%), Positives = 72/145 (49%)
Query: 54 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRL 112
+N G YVEV + E + + R + P+ K S T +++L
Sbjct: 91 KNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAMRKISGHGTAFVVKL 150
Query: 113 RGLPFSAGKDDIMDFFK--DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 170
RGLP++ + I +FF D + I M+ GR TGEAFV+F + +D++ A+ ++R
Sbjct: 151 RGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGRNR 210
Query: 171 MTLGSRYIELFPSSHEEMDEALSRG 195
+G RYIE+F SS EM A G
Sbjct: 211 EKIGHRYIEIFRSSIAEMKRATGAG 235
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 36/88 (40%), Positives = 59/88 (67%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAAM 166
+RLRGLP+SA +I+DF ++ ++ S IH +T DG+ TGEA+VE A+ ED + A
Sbjct: 51 VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEAR 110
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 111 KLNKASMGHRYIEVFTATPKEAKEAMRK 138
Score = 132 (51.5 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 475 GNDIEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 530
Query: 160 EDSKAAMAKDRMTLGSRYIELF 181
EDS+ AM + R +GSRYIELF
Sbjct: 531 EDSQVAMKRHREQMGSRYIELF 552
Score = 95 (38.5 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
+LFV + + TGEAF + AL RNR+ +G RY+E+FRS E +A
Sbjct: 178 ILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 231
Score = 76 (31.8 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
+ K TGEA+ + V+ A + N+ +MG RY+EVF + +E +A+
Sbjct: 89 DGKNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM 136
>UNIPROTKB|F1NWS6 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 EMBL:AADN02009154 IPI:IPI00602123
Ensembl:ENSGALT00000018869 OMA:ISTKREM Uniprot:F1NWS6
Length = 411
Score = 139 (54.0 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 34/87 (39%), Positives = 52/87 (59%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG-RPTGEAFVEFANAEDSKAAM 166
G++ LRGLPF + +DDI DFF +++ +T G R TGEA+V+FA E A+
Sbjct: 174 GVVLLRGLPFDSTEDDIADFFAGLRITD----MTFVYRGERKTGEAYVQFAAPEMVAKAL 229
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALS 193
+ + + +RYIE++ S+ EM LS
Sbjct: 230 LRHKEYMENRYIEVYISTKREMQRHLS 256
Score = 135 (52.6 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVE 155
+E +DS ++R G PF+ K ++M FF + E+ IH +N DGR G+A +E
Sbjct: 68 EENEDSVF---LIRAHGFPFACTKKEMMAFFDSCKIRNGENGIHFLLNRDGRRRGDALIE 124
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+ D + A+ K+ +G+RY+++ +++D L
Sbjct: 125 LESKADVQKALEKNLRYMGTRYVKVHEIHDKDVDGLL 161
Score = 123 (48.4 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RG P DI+DFF L I I NSDG TGEA V F + +D+ AAMAK+
Sbjct: 331 VHVRGFPPQVSAQDIVDFFAP--LKPTRILIEYNSDGVATGEADVHFESYDDAVAAMAKE 388
Query: 170 RMTLGSRYIELF 181
R L +E+F
Sbjct: 389 RAQLQFGTVEVF 400
Score = 97 (39.2 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 19 IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
I D+ FV++ + TGEA+ P V AL R+++ M RY+EV+ S ++E + ++
Sbjct: 199 ITDMTFVYRGERKTGEAYVQFAAPEMVAKALLRHKEYMENRYIEVYISTKREMQRHLS 256
Score = 57 (25.1 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 63
++++ + G+A L V AL++N + MG RYV+V
Sbjct: 111 LNRDGRRRGDALIELESKADVQKALEKNLRYMGTRYVKV 149
>UNIPROTKB|F1P8D4 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
EMBL:AAEX03018089 Ensembl:ENSCAFT00000000519 OMA:THEDAGA
Uniprot:F1P8D4
Length = 193
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 38/88 (43%), Positives = 52/88 (59%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI FF L+ +HI + GR GEA VEF
Sbjct: 77 DGGSSFQSTTGHCVHMRGLPYRATENDIYIFFSP--LNPVRVHIEIGPGGRVAGEADVEF 134
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 135 ATHEDAGAAMSKDKANMQHRYVELFLNS 162
>UNIPROTKB|E7EN40 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00981333
ProteinModelPortal:E7EN40 SMR:E7EN40 Ensembl:ENST00000523137
ArrayExpress:E7EN40 Bgee:E7EN40 Uniprot:E7EN40
Length = 166
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIE 179
KDR T+G RY+E
Sbjct: 72 KKDRETMGHRYVE 84
Score = 115 (45.5 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 91 NGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 143
Score = 73 (30.8 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVE 62
+ F++ + + +GEAF L +V AL+++R+ MG RYVE
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE 84
>UNIPROTKB|D6RDL0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HOGENOM:HOG000220896 HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00964237
ProteinModelPortal:D6RDL0 SMR:D6RDL0 Ensembl:ENST00000515714
ArrayExpress:D6RDL0 Bgee:D6RDL0 Uniprot:D6RDL0
Length = 84
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIE 179
KDR T+G RY+E
Sbjct: 72 KKDRETMGHRYVE 84
>RGD|1310858 [details] [associations]
symbol:Grsf1 "G-rich RNA sequence binding factor 1"
species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISO] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 CTD:2926 eggNOG:NOG319259
HOGENOM:HOG000220896 OrthoDB:EOG4XPQGW IPI:IPI00364208
EMBL:BC103654 RefSeq:NP_001094360.1 UniGene:Rn.66912 GeneID:305256
KEGG:rno:305256 UCSC:RGD:1310858 InParanoid:Q3SYP9 NextBio:654276
ArrayExpress:Q3SYP9 Genevestigator:Q3SYP9 Uniprot:Q3SYP9
Length = 142
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 40/93 (43%), Positives = 54/93 (58%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGE 151
A++ D G ++H + +RGLPF A DI++FF + ITM +S G+ TGE
Sbjct: 51 AEAVDFGAVPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGE 104
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A V F ED+ AAM KDR + RYIELF +S
Sbjct: 105 ADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 137
>WB|WBGene00022253 [details] [associations]
symbol:hrpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 EMBL:FO081731 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K12898 RefSeq:NP_741422.1
ProteinModelPortal:Q8MXR2 SMR:Q8MXR2 DIP:DIP-24945N IntAct:Q8MXR2
MINT:MINT-1106723 STRING:Q8MXR2 PaxDb:Q8MXR2
EnsemblMetazoa:Y73B6BL.33 GeneID:177398 KEGG:cel:CELE_Y73B6BL.33
UCSC:Y73B6BL.33 CTD:177398 WormBase:Y73B6BL.33 HOGENOM:HOG000017787
InParanoid:Q8MXR2 OMA:QRMGRRY NextBio:896644 Uniprot:Q8MXR2
Length = 610
Score = 161 (61.7 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 38/101 (37%), Positives = 54/101 (53%)
Query: 95 KSHDEGKDSAVHTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 148
K DE + + +G +RLRGLPF+A + DI +FF + T GRP
Sbjct: 45 KEADESMPTKISSGEPPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTT---GRP 101
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
GEA+VEF N E++ AM DR + +RYIE+F +E +
Sbjct: 102 NGEAYVEFKNTEEAGKAMENDRKEISNRYIEVFTVEADEAE 142
Score = 154 (59.3 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 49/159 (30%), Positives = 78/159 (49%)
Query: 44 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR-SIPRAKSHDEGKD 102
+V F R N G YVE F++ +E KA+ N+ ++ ++ ++ E +
Sbjct: 91 RVKFVCTTGRPN-GEAYVE-FKNT-EEAGKAMENDRKEISNRYIEVFTVEADEAEFEFRP 147
Query: 103 SAVHTG----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI--TMNSDGRPTGEAFVEF 156
G ++RLRG+P+S +DD+ FF+ I I T RP+GEAFV F
Sbjct: 148 DPDSNGEVNHVIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPSGEAFVRF 207
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+ ++ AM + +GSRY+E+F SS E + A G
Sbjct: 208 TTQDAAEKAMDYNNRHMGSRYVEVFMSSMVEFNRAKGGG 246
Score = 140 (54.3 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 47/144 (32%), Positives = 66/144 (45%)
Query: 43 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
+ VD R+ G RY + + + Y N S GG R HD+G
Sbjct: 263 MSVDSGYDHGRRGGGGRYGDSSYDRGYDDY----NRGS--YGG--RRDYGYNGGHDQGGR 314
Query: 103 SAVHTG---ILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
S G LR +RGLP+ A I FF L S+ I +N GRP+G+A EF
Sbjct: 315 SDYGRGGDDPLRVYMRGLPYDADDHAIAAFFSP--LRCHSVKIGINETGRPSGDAIAEFD 372
Query: 158 NAEDSKAAMAKDRMTLGSRYIELF 181
N D + A++++ +G RY+ELF
Sbjct: 373 NYNDLQVALSRNNQRMGRRYVELF 396
>UNIPROTKB|E5RI26 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 IPI:IPI00889667
ProteinModelPortal:E5RI26 SMR:E5RI26 Ensembl:ENST00000522756
ArrayExpress:E5RI26 Bgee:E5RI26 Uniprot:E5RI26
Length = 94
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 9 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 68
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 69 HKHHMGTRYIEVYKATGED 87
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 149 (57.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 53/159 (33%), Positives = 79/159 (49%)
Query: 29 NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH 88
NK TG F +V ALQ NR+ MG RY+EVFR K KA + G
Sbjct: 332 NK-TGYVFVDFSSEEEVKKALQCNREYMGGRYIEVFREKSIPTAKAPPKNSTKAWQG--- 387
Query: 89 RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DG 146
R++ H+E +D A +G L +R LP+++ ++D+ F + LSE +H ++S
Sbjct: 388 RTLGE---HEEEEDLA-DSGRLFVRNLPYTSSEEDLEKLFSKYGPLSE--LHYPIDSLTK 441
Query: 147 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
+P G AFV F E + A A+ D R + + PS+
Sbjct: 442 KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 480
Score = 131 (51.2 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
HT ++LRG PF+ + ++M+F L +I I N+ G TG FV+F++ E+ K A
Sbjct: 295 HT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKA 350
Query: 166 MAKDRMTLGSRYIELF 181
+ +R +G RYIE+F
Sbjct: 351 LQCNREYMGGRYIEVF 366
>UNIPROTKB|E5RHG1 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00982580 ProteinModelPortal:E5RHG1
SMR:E5RHG1 Ensembl:ENST00000520560 ArrayExpress:E5RHG1 Bgee:E5RHG1
Uniprot:E5RHG1
Length = 122
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
>UNIPROTKB|E5RJ83 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00982018 ProteinModelPortal:E5RJ83
SMR:E5RJ83 Ensembl:ENST00000518597 ArrayExpress:E5RJ83 Bgee:E5RJ83
Uniprot:E5RJ83
Length = 143
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
>UNIPROTKB|E5RJV8 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00981453 ProteinModelPortal:E5RJV8
SMR:E5RJV8 Ensembl:ENST00000519109 ArrayExpress:E5RJV8 Bgee:E5RJV8
Uniprot:E5RJV8
Length = 149
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
>UNIPROTKB|H0YAM1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC021989
HGNC:HGNC:4610 ChiTaRS:GRSF1 PRIDE:H0YAM1 Ensembl:ENST00000506453
Bgee:H0YAM1 Uniprot:H0YAM1
Length = 114
Score = 87 (35.7 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
KS V+ G++RLRGLP+S + DI+DFF D
Sbjct: 47 KSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAD 82
Score = 64 (27.6 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
K G+A + V AL+++R MG+RYVEV+ ++
Sbjct: 1 KRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 41
>UNIPROTKB|E5RJW8 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00980861 ProteinModelPortal:E5RJW8
SMR:E5RJW8 Ensembl:ENST00000521947 ArrayExpress:E5RJW8 Bgee:E5RJW8
Uniprot:E5RJW8
Length = 82
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDE 190
+ +ELF SS EM +
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQK 81
>RGD|1593040 [details] [associations]
symbol:LOC679087 "similar to swan" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1593040
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087828 OrthoDB:EOG4NKBVV CTD:389677
IPI:IPI00765757 RefSeq:XP_001053414.1 RefSeq:XP_232819.3
ProteinModelPortal:D3ZM54 Ensembl:ENSRNOT00000061333 GeneID:313069
KEGG:rno:313069 NextBio:665610 Uniprot:D3ZM54
Length = 843
Score = 144 (55.7 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 32/88 (36%), Positives = 49/88 (55%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLPF AG DI FFK + + +H+ G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVI----GGKAGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIDMKR 87
Score = 132 (51.5 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF L D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSG--LCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 129 (50.5 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 49/181 (27%), Positives = 77/181 (42%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A++
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTASKG 242
Query: 80 SDV---RGG--SPHRSI------PRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDF 127
D R SP R + R++S S G + LR L K D+
Sbjct: 243 GDTLHKRSEEHSPSRRLNDRYFWKRSRSKSPRTRSRSPLGFYVHLRNLSLHTNKRDLRYL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D LS D I + D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLSNDQIKF-LYKDDRRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPISRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 125 (49.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 49/173 (28%), Positives = 77/173 (44%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ F++K+++ T AF + + AL ++ + R V + R+E K I
Sbjct: 313 IKFLYKDDRRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPISRKEMVKIIEC-YEK 371
Query: 82 VRGGSPHRSIP-RA--KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S P R K +EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEEERPGRVSQKYSEEGFPGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT-LGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R LG+ + L S E+M E
Sbjct: 432 YLLSDDKGIGLGEALVRFKSEEQAMKAERLNRQRFLGTEVL-LRLISEEQMQE 483
Score = 119 (46.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 108 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ AA
Sbjct: 765 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVAMTNYNEALAA 824
Query: 166 MAKDRM--TLGSRYIEL 180
+ KD +G R ++L
Sbjct: 825 V-KDLSGRPVGPRKVKL 840
Score = 43 (20.2 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
VH GEAF + A+ R+ + VE+F S + E K I
Sbjct: 33 VHVIGGKAGEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKVEMQKTI 83
>UNIPROTKB|F2Z5W4 [details] [associations]
symbol:LOC100737162 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00620000087736 EMBL:CU468421
Ensembl:ENSSSCT00000011205 Uniprot:F2Z5W4
Length = 133
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+HI + +DGR TGEA VEF ED+ AAM+KD+ + RYIELF +S
Sbjct: 10 VHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNS 56
>UNIPROTKB|H0YAQ2 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
Ensembl:ENST00000519958 Bgee:H0YAQ2 Uniprot:H0YAQ2
Length = 131
Score = 114 (45.2 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+GEAFVE + ++ K A+ KDR T+G RY+E+F S++ EMD L
Sbjct: 1 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVL 44
Score = 89 (36.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 1 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 39
Score = 76 (31.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
D+A + G +RLRGLPF K++I+ FF + S ++ + +
Sbjct: 53 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGILKSLRAVELKL 92
>UNIPROTKB|A6PVI0 [details] [associations]
symbol:RBM12 "RNA-binding protein 12" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL109827
UniGene:Hs.700188 HGNC:HGNC:9898 IPI:IPI00852629 SMR:A6PVI0
STRING:A6PVI0 Ensembl:ENST00000431148 Uniprot:A6PVI0
Length = 143
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
>UNIPROTKB|A6PVI1 [details] [associations]
symbol:RBM12 "RNA-binding protein 12" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL109827
UniGene:Hs.700188 HGNC:HGNC:9898 IPI:IPI00852859 SMR:A6PVI1
STRING:A6PVI1 Ensembl:ENST00000435161 Uniprot:A6PVI1
Length = 134
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
>MGI|MGI:1924854 [details] [associations]
symbol:Rbm12b2 "RNA binding motif protein 12 B2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1924854 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q8R4X3 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
HOGENOM:HOG000231575 HOVERGEN:HBG057691 OrthoDB:EOG4NKBVV
EMBL:AK080943 EMBL:AK169895 EMBL:AL772167 EMBL:BC030408
EMBL:BC080741 IPI:IPI00471450 IPI:IPI00828825 RefSeq:NP_945195.1
UniGene:Mm.474129 UniGene:Mm.483494 ProteinModelPortal:Q66JV4
SMR:Q66JV4 STRING:Q66JV4 PhosphoSite:Q66JV4 PRIDE:Q66JV4
Ensembl:ENSMUST00000063839 Ensembl:ENSMUST00000095143 GeneID:77604
KEGG:mmu:77604 UCSC:uc008san.2 CTD:77604 InParanoid:A2AJP4
NextBio:347196 Bgee:Q66JV4 CleanEx:MM_C430048L16RIK
Genevestigator:Q66JV4 Uniprot:Q66JV4
Length = 834
Score = 142 (55.0 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 33/88 (37%), Positives = 48/88 (54%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 138 (53.6 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 48/181 (26%), Positives = 80/181 (44%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A E
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTATEG 242
Query: 80 SD---VRGG--SPHRSIP----RAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDF 127
D +R SP R I R +SH + + + + + L+ L + K D+ +
Sbjct: 243 GDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRARSRSPLGFYVHLKNLSLNTNKRDLRNL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ D I D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 132 (51.5 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF L D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSG--LCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 122 (48.0 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 47/172 (27%), Positives = 73/172 (42%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ FV+K+ + T AF + + AL ++ + R V + R+E + I
Sbjct: 313 IKFVYKDERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIEC-YEK 371
Query: 82 VRGGSPHRSIP-RA--KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S + P R K EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 432 YLLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQE 483
Score = 117 (46.2 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 108 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ +A
Sbjct: 756 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSA 815
Query: 166 MAKDRM--TLGSRYIEL 180
+ KD +G R ++L
Sbjct: 816 V-KDLSGRPVGPRKVKL 831
Score = 43 (20.2 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 18/64 (28%), Positives = 25/64 (39%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA-NEVSDVR 83
VH GEAF + A+ R+ + VE+F S + E K I + V
Sbjct: 33 VHIIGGKVGEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKVEMQKTIEMKRTARVG 92
Query: 84 GGSP 87
G P
Sbjct: 93 RGRP 96
Score = 40 (19.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 42 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
P Q F + ++++ R E FR R+E ++ +A+E D R S
Sbjct: 617 PSQEHFR-RSYQEHIRRPPQEHFRRSREEDFRHVADE--DFRQAS 658
>MGI|MGI:1919647 [details] [associations]
symbol:Rbm12b1 "RNA binding motif protein 12 B1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1919647 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q8R4X3 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
EMBL:AL929413 EMBL:AK013872 EMBL:AK031339 EMBL:BC050844
EMBL:BC054081 IPI:IPI00134417 RefSeq:NP_082502.2 UniGene:Mm.430709
UniGene:Mm.490798 ProteinModelPortal:Q80YR9 SMR:Q80YR9
STRING:Q80YR9 PhosphoSite:Q80YR9 PRIDE:Q80YR9
Ensembl:ENSMUST00000050069 Ensembl:ENSMUST00000069128 GeneID:72397
KEGG:mmu:72397 UCSC:uc008sam.1 CTD:72397 HOGENOM:HOG000231575
HOVERGEN:HBG057691 InParanoid:B1AZ74 OMA:EHFRRPP OrthoDB:EOG4NKBVV
NextBio:336186 Bgee:Q80YR9 Genevestigator:Q80YR9 Uniprot:Q80YR9
Length = 836
Score = 142 (55.0 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 33/88 (37%), Positives = 48/88 (54%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 138 (53.6 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 48/181 (26%), Positives = 80/181 (44%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A E
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTATEG 242
Query: 80 SD---VRGG--SPHRSIP----RAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDF 127
D +R SP R I R +SH + + + + + L+ L + K D+ +
Sbjct: 243 GDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRARSRSPLGFYVHLKNLSLNTNKRDLRNL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ D I D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 132 (51.5 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF L D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSG--LCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 122 (48.0 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 47/172 (27%), Positives = 73/172 (42%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ FV+K+ + T AF + + AL ++ + R V + R+E + I
Sbjct: 313 IKFVYKDERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIEC-YEK 371
Query: 82 VRGGSPHRSIP-RA--KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S + P R K EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 432 YLLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQE 483
Score = 114 (45.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 31/95 (32%), Positives = 48/95 (50%)
Query: 90 SIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
S P AK + + V I+ ++ LPF A +I+DFF + + DS+ + N G
Sbjct: 740 SFPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGL 799
Query: 148 PTGEAFVEFANAEDSKAAMAKDRM--TLGSRYIEL 180
P GEA V N ++ AA+ KD +G R ++L
Sbjct: 800 PIGEAIVAMTNYNEALAAV-KDLSGRPVGPRKVKL 833
Score = 43 (20.2 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 18/64 (28%), Positives = 25/64 (39%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA-NEVSDVR 83
VH GEAF + A+ R+ + VE+F S + E K I + V
Sbjct: 33 VHIIGGKVGEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKVEMQKTIEMKRTARVG 92
Query: 84 GGSP 87
G P
Sbjct: 93 RGRP 96
Score = 38 (18.4 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 62 EVFRSKRQEYYKAIANEVSDVRGGS 86
E FR R+E ++ +A+E D R S
Sbjct: 638 EHFRRSREEDFRHVADE--DFRQAS 660
Score = 37 (18.1 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 50 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHD 98
+++R+ + + E FR QE+++ E +R P R++ D
Sbjct: 602 EKDRRQLRSPWEEDFRRPSQEHFRRSYQE--HIRQ-PPEEHFRRSREED 647
>ZFIN|ZDB-GENE-030131-6428 [details] [associations]
symbol:zgc:56148 "zgc:56148" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6428 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087828 EMBL:BX321920
IPI:IPI00491398 Ensembl:ENSDART00000111912 ArrayExpress:E7F6E2
Bgee:E7F6E2 Uniprot:E7F6E2
Length = 665
Score = 141 (54.7 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 35/108 (32%), Positives = 56/108 (51%)
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
++RG + A+ +G D+ + L+L G+PFSA KD++ +FF L D I
Sbjct: 129 EMRGRPASSTFSEARRQRDG-DAPERAEVYLKLTGMPFSATKDNVHNFFAG--LKVDDIL 185
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
N G +G + V F ED+ + +DR +GSRYI++ + EE
Sbjct: 186 FLKNPRGMFSGNSMVRFTTKEDAIEGLKRDRQYMGSRYIQITRCTEEE 233
Score = 124 (48.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GL +AG +DI +FF + + +HI G EAF+ FA+ ED++ AM++
Sbjct: 4 VIRLQGLRVTAGSEDIRNFFTGLRIPDGGVHII----GGELEEAFIIFASDEDARRAMSR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
+ + LF SS EM L
Sbjct: 60 SGGCIKGSTVNLFLSSKSEMQSVL 83
Score = 123 (48.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 44/163 (26%), Positives = 73/163 (44%)
Query: 21 DVLFVHKNNKFTGEAFCVLGYPLQVDFA--LQRNRQNMGRRYVEVFRSKRQEYYKAIANE 78
D + + + K V+ + D+ L N++ M + V V +++ + +
Sbjct: 303 DQIIIFSSKKDDKSKSAVVVFRSLTDYCAGLAHNKEMMYNKVVYVSPISKEKMVTMLESS 362
Query: 79 VSDVRG---GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 135
+ D RG GS RS ++S DS + L +R LPF K +IMDFF + L+E
Sbjct: 363 I-DARGEEKGS-RRSAEASQSQRNTPDSQLRC--LYVRNLPFDVRKVEIMDFFHGYALTE 418
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 178
D + + + G GEA V F + K AM + G R++
Sbjct: 419 DRVILLRDERGAGLGEALVIF---QTEKEAMTGQSLN-GQRFL 457
Score = 121 (47.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 49/186 (26%), Positives = 84/186 (45%)
Query: 17 MDIVDVLFVHKNNK--FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
+ + D+LF+ KN + F+G + L+R+RQ MG RY+++ R +E+ K
Sbjct: 179 LKVDDILFL-KNPRGMFSGNSMVRFTTKEDAIEGLKRDRQYMGSRYIQITRCTEEEWLKE 237
Query: 75 ----IANE------VSDVRGGSP--HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKD 122
+A + V VR SP +RS R+ SH+E + LP K
Sbjct: 238 GGLIVAADMRKRTPVERVRSRSPISYRSRSRSPSHEEY--------CIMFENLPPLVEKR 289
Query: 123 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182
D+ F + L +D I I + + A V F + D A +A ++ + ++ + + P
Sbjct: 290 DVRVFLQPVALKDDQIIIFSSKKDDKSKSAVVVFRSLTDYCAGLAHNKEMMYNKVVYVSP 349
Query: 183 SSHEEM 188
S E+M
Sbjct: 350 ISKEKM 355
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 141 (54.7 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 50/159 (31%), Positives = 78/159 (49%)
Query: 29 NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH 88
NK TG F +V AL+ NR+ MG RY+EVFR + KA G P
Sbjct: 292 NK-TGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNIPVAKAPLKN-----GAKPW 345
Query: 89 RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DG 146
+ + H+E +D A +G L +R LP+++ ++D+ F + +SE +H ++S
Sbjct: 346 QGRTLGE-HEEEEDLA-DSGRLFVRNLPYTSSEEDLEKLFSRYGPVSE--LHYPIDSLTK 401
Query: 147 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
+P G AFV F E + A A+ D R + + PS+
Sbjct: 402 KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 440
>WB|WBGene00013703 [details] [associations]
symbol:Y106G6D.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
EMBL:AL031629 PIR:B87957 PIR:T26417 RefSeq:NP_492671.1
ProteinModelPortal:Q9U304 SMR:Q9U304 DIP:DIP-26480N IntAct:Q9U304
MINT:MINT-1041092 STRING:Q9U304 PaxDb:Q9U304
EnsemblMetazoa:Y106G6D.7 GeneID:172878 KEGG:cel:CELE_Y106G6D.7
UCSC:Y106G6D.7 CTD:172878 WormBase:Y106G6D.7 HOGENOM:HOG000019591
InParanoid:Q9U304 OMA:YEASYPP NextBio:877371 Uniprot:Q9U304
Length = 948
Score = 141 (54.7 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP +AG D+ FF + + ++HI G GE FV F++ +D++ AM K
Sbjct: 4 IIRLKNLPMTAGASDVRTFFTGLKIPDGAVHII----GGDEGEVFVGFSSDDDARLAMTK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR+ + + LF SS E + ++
Sbjct: 60 DRLMIHGAEVRLFLSSKSEQNSVIA 84
>UNIPROTKB|E2RRS5 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:AAEX03015951 RefSeq:XP_544177.3
Ensembl:ENSCAFT00000014490 GeneID:487048 KEGG:cfa:487048
NextBio:20860720 Uniprot:E2RRS5
Length = 994
Score = 141 (54.7 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 51/185 (27%), Positives = 84/185 (45%)
Query: 20 VD-VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
VD V+F+ H + + G+A + L+ +R MG R++EV + Q++ + N
Sbjct: 180 VDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGN 239
Query: 78 EVSDV------RGGSPHRSIP----RAKSHDEGKD---SAVHTGI-LRLRGLPFSAGKDD 123
V +V SP R I R +SH + S G + L+ L S K D
Sbjct: 240 AVKEVDIPMRTEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSINKRD 299
Query: 124 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
+ +FF+D L+ + I + D R T AFV F +D +A+ + L R + + P
Sbjct: 300 LRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNSALGLHKTVLQYRPVHIDPV 358
Query: 184 SHEEM 188
S ++M
Sbjct: 359 SRKQM 363
Score = 136 (52.9 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMRR 87
Score = 129 (50.5 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF L D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSG--LCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 122 (48.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 920 IKIMNLPFKANVNEILDFFHGYRILPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 979
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 980 NDR-PVGPRKVKL 991
Score = 43 (20.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 33 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
GEAF + A+ R+ + VE+F S + E K I +D
Sbjct: 41 GEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMRRTD 89
Score = 37 (18.1 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
K T F L L DF R+ RR E FR R+E+++
Sbjct: 541 KQTQADFRQLDRSLPEDF---RHSPEDFRRSPEDFRRPREEHFR 581
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 140 (54.3 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 48/160 (30%), Positives = 76/160 (47%)
Query: 29 NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-IANEVSDVRGGSP 87
NK TG F ++ AL+ NR+ MG RY+E+FR K K + N +G
Sbjct: 334 NK-TGYIFVDFRSEEEIKQALKCNREYMGGRYIEIFREKNVPTTKGPLKNSAKPWQG--- 389
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-D 145
R +E ++ +G L +R LP+++ ++D+ F F LSE +H ++S
Sbjct: 390 -----RTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSE--LHYPIDSLT 442
Query: 146 GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
+P G AFV F E + A A+ D R + + PS+
Sbjct: 443 KKPKGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPST 482
Score = 123 (48.4 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++LRG PF+ + ++++F L +I I N+ G TG FV+F + E+ K A+ +
Sbjct: 299 VKLRGAPFNVTEKNVLEFLAP--LRPVAIRIVRNAHGNKTGYIFVDFRSEEEIKQALKCN 356
Query: 170 RMTLGSRYIELF 181
R +G RYIE+F
Sbjct: 357 REYMGGRYIEIF 368
>FB|FBgn0035235 [details] [associations]
symbol:CG7879 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:AE014296
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000381
GeneTree:ENSGT00620000087828 FlyBase:FBgn0035235 RefSeq:NP_647626.1
RefSeq:NP_728631.1 UniGene:Dm.21365 SMR:Q9W0D6 IntAct:Q9W0D6
MINT:MINT-286284 EnsemblMetazoa:FBtr0072826
EnsemblMetazoa:FBtr0072827 GeneID:38184 KEGG:dme:Dmel_CG7879
UCSC:CG7879-RA InParanoid:Q9W0D6 OMA:RAEMQKV GenomeRNAi:38184
NextBio:807399 Uniprot:Q9W0D6
Length = 985
Score = 140 (54.3 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 118 (46.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ +R +PF A DIM FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 910 VVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFES 969
Query: 169 DR 170
R
Sbjct: 970 RR 971
Score = 39 (18.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 33 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
G+AF A+ ++R+ + V + S R E K I
Sbjct: 41 GDAFIAFSTDEDARCAMLKDREKLMEIQVRLLLSSRAEMQKVI 83
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 139 (54.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 32/95 (33%), Positives = 52/95 (54%)
Query: 87 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
P K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G
Sbjct: 275 PEARAETEKPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHG 330
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
TG FV+F+N E+ K A+ +R +G RYIE+F
Sbjct: 331 NKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 137 (53.3 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 52/173 (30%), Positives = 81/173 (46%)
Query: 29 NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK-AIANEVSDVRGGSP 87
NK TG F +V AL+ NR+ MG RY+EVFR K K A N +G
Sbjct: 331 NK-TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG--- 386
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-D 145
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S
Sbjct: 387 -----RILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLT 439
Query: 146 GRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS--HEEMDEALSRG 195
+P G AF+ F E + KA D R + + PS+ E ++A + G
Sbjct: 440 KKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALG 492
>UNIPROTKB|B9ZVT1 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010834 HOGENOM:HOG000231575
HGNC:HGNC:32310 IPI:IPI00217626 ProteinModelPortal:B9ZVT1
SMR:B9ZVT1 PRIDE:B9ZVT1 Ensembl:ENST00000517700 ArrayExpress:B9ZVT1
Bgee:B9ZVT1 Uniprot:B9ZVT1
Length = 881
Score = 138 (53.6 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 45/165 (27%), Positives = 75/165 (45%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYI 178
ED I++ + G GEA V+F + E + KA R LG+ +
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGTEVL 471
Score = 136 (52.9 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 130 (50.8 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF L D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSG--LCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 129 (50.5 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 49/191 (25%), Positives = 86/191 (45%)
Query: 20 VD-VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
VD V+F+ H + + G+A + L+ +R MG R++EV + Q++ + N
Sbjct: 180 VDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGN 239
Query: 78 EVS--DVRGGSPHRSIPRA--------KSHDEGKD---SAVHTGI-LRLRGLPFSAGKDD 123
V DV S S PR +SH + S G + L+ L S + D
Sbjct: 240 AVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERD 299
Query: 124 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
+ +FF+ L+++ I + R T AFV F +D A++ + L R + + P
Sbjct: 300 LRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPI 358
Query: 184 SHEEMDEALSR 194
S ++M + ++R
Sbjct: 359 SRKQMLKFIAR 369
Score = 122 (48.0 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 807 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 866
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 867 NDR-PVGPRKVKL 878
Score = 47 (21.6 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 33 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSP 87
GEAF + A+ R+ + VE+F S + E K I + +D G G P
Sbjct: 41 GEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRP 96
>UNIPROTKB|Q8IXT5 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG299235 EMBL:AC010834 HOGENOM:HOG000231575
HOVERGEN:HBG057691 OMA:EHFRRPP OrthoDB:EOG4NKBVV IPI:IPI00871780
RefSeq:NP_976324.2 UniGene:Hs.606916 HSSP:Q9NTZ6
ProteinModelPortal:Q8IXT5 SMR:Q8IXT5 IntAct:Q8IXT5 STRING:Q8IXT5
PhosphoSite:Q8IXT5 DMDM:215273872 PaxDb:Q8IXT5 PRIDE:Q8IXT5
Ensembl:ENST00000399300 GeneID:389677 KEGG:hsa:389677
UCSC:uc003yfz.3 CTD:389677 GeneCards:GC08M094813 H-InvDB:HIX0025665
HGNC:HGNC:32310 HPA:HPA024398 neXtProt:NX_Q8IXT5
PharmGKB:PA142671098 GenomeRNAi:389677 NextBio:103029
ArrayExpress:Q8IXT5 Bgee:Q8IXT5 CleanEx:HS_RBM12B
Genevestigator:Q8IXT5 Uniprot:Q8IXT5
Length = 1001
Score = 138 (53.6 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 45/165 (27%), Positives = 75/165 (45%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYI 178
ED I++ + G GEA V+F + E + KA R LG+ +
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGTEVL 471
Score = 136 (52.9 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 130 (50.8 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF L D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSG--LCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 129 (50.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 49/191 (25%), Positives = 86/191 (45%)
Query: 20 VD-VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
VD V+F+ H + + G+A + L+ +R MG R++EV + Q++ + N
Sbjct: 180 VDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGN 239
Query: 78 EVS--DVRGGSPHRSIPRA--------KSHDEGKD---SAVHTGI-LRLRGLPFSAGKDD 123
V DV S S PR +SH + S G + L+ L S + D
Sbjct: 240 AVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERD 299
Query: 124 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
+ +FF+ L+++ I + R T AFV F +D A++ + L R + + P
Sbjct: 300 LRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPI 358
Query: 184 SHEEMDEALSR 194
S ++M + ++R
Sbjct: 359 SRKQMLKFIAR 369
Score = 122 (48.0 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 47 (21.6 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 33 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSP 87
GEAF + A+ R+ + VE+F S + E K I + +D G G P
Sbjct: 41 GEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRP 96
>UNIPROTKB|F1RY40 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:CU633952 RefSeq:XP_003125614.1
UniGene:Ssc.32661 Ensembl:ENSSSCT00000006702 GeneID:100514101
KEGG:ssc:100514101 Uniprot:F1RY40
Length = 986
Score = 137 (53.3 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 130 (50.8 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 48/185 (25%), Positives = 82/185 (44%)
Query: 20 VD-VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
VD V+F+ H + + G+A + L+ +R MG R++EV + Q++ + N
Sbjct: 180 VDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGN 239
Query: 78 EVS--DVRGGSPHRSIPRA--------KSHDEGKD---SAVHTGI-LRLRGLPFSAGKDD 123
+ D+ + S PR +SH + S G + L+ L S K D
Sbjct: 240 AMKEDDIPMRTEEHSQPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSINKRD 299
Query: 124 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
+ +FF+D L+ + I + D R T AFV F +D A+ + L R + + P
Sbjct: 300 LRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVHIDPV 358
Query: 184 SHEEM 188
S ++M
Sbjct: 359 SRKQM 363
Score = 129 (50.5 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF L D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSG--LCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 121 (47.7 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 912 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 971
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 972 NDR-PVGPRKVKL 983
Score = 113 (44.8 bits), Expect = 0.00082, P = 0.00082
Identities = 49/175 (28%), Positives = 81/175 (46%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ F++K+ + T AF + + AL ++ + R V + R++ K I E +
Sbjct: 314 IRFLYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVHIDPVSRKQMLKFI--ECYE 371
Query: 82 VRGGSPHRSIPRAK-SHDEGKDSAV-HTG---ILRLRGLPFSAGKDDIMDFFKDFVLSED 136
+ P SI + K H K S ++G + +R PF K ++ FF DF L+ED
Sbjct: 372 KK--RP-ASIEKEKLGHISQKYSQEGYSGQKLCIYIRNFPFDVTKVEVQKFFADFSLAED 428
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDE 190
I++ + G GEA V+F + E + KA R LG+ + L S +M E
Sbjct: 429 DIYLLYDDKGIGLGEALVKFKSEEQAMKAERLNRRRFLGTEVL-LRLISEVQMQE 482
Score = 47 (21.6 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84
VH GEAF + A+ R+ + VE+F S + E K I + +D G
Sbjct: 33 VHIIGGEVGEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRMG 92
Score = 35 (17.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 58 RRYVEVFRSKRQEYYK 73
RR E FR R+E+++
Sbjct: 566 RRSPEDFRRLREEHFR 581
>UNIPROTKB|E1B7G5 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:DAAA02039473 IPI:IPI00687016
RefSeq:XP_002692866.1 RefSeq:XP_881008.3 Ensembl:ENSBTAT00000017837
GeneID:506017 KEGG:bta:506017 NextBio:20867413 Uniprot:E1B7G5
Length = 984
Score = 136 (52.9 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAVSR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 127 (49.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF L D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSG--LCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEE 187
R +GSR+IE+ S ++
Sbjct: 215 RSFMGSRFIEVMQGSEKQ 232
Score = 125 (49.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 48/185 (25%), Positives = 81/185 (43%)
Query: 20 VD-VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
VD V+F+ H + + G+A + L+ +R MG R++EV + +++ N
Sbjct: 180 VDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEKQWIDFGGN 239
Query: 78 EVSD------VRGGSPHRSIP----RAKSHDEGKD---SAVHTGI-LRLRGLPFSAGKDD 123
+ + +P R I R +SH + S G + L+ L S K D
Sbjct: 240 LIKEGDISMRTEEHTPPRGINDRHFRKRSHSKSPRRTCSRSPLGFYVHLKNLSVSINKRD 299
Query: 124 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
+ +FF+D L+ + I + D R T AFV F +D A+ + L R + + P
Sbjct: 300 LRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVYIDPV 358
Query: 184 SHEEM 188
S E+M
Sbjct: 359 SREQM 363
Score = 122 (48.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 910 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 969
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 970 NDR-PVGPRKVKL 981
Score = 45 (20.9 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 33 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84
GEAF + A+ R+ + VE+F S + E K I + +D G
Sbjct: 41 GEAFIIFATDEDARRAVSRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRMG 92
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 135 (52.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 51/172 (29%), Positives = 80/172 (46%)
Query: 29 NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH 88
NK TG F L +V AL+ NR MG RY+EVFR K+ + + +G
Sbjct: 330 NK-TGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQG---- 384
Query: 89 RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DG 146
R +E ++ +G L +R L +++ ++D+ F + LSE +H ++S
Sbjct: 385 ----RTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--LHYPIDSLTK 438
Query: 147 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS--HEEMDEALSRG 195
+P G AFV F E + A A+ D R + + PS+ E EA + G
Sbjct: 439 KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPG 490
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++LRG PF+ + ++++F L +I I N+ G TG FV+ ++ E+ K A+ +
Sbjct: 295 VKLRGAPFNVTEKNVIEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCN 352
Query: 170 RMTLGSRYIELF 181
R +G RYIE+F
Sbjct: 353 RDYMGGRYIEVF 364
>UNIPROTKB|F1NVJ4 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AADN02024868 IPI:IPI00599613 Ensembl:ENSGALT00000025676
ArrayExpress:F1NVJ4 Uniprot:F1NVJ4
Length = 415
Score = 130 (50.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 49/171 (28%), Positives = 83/171 (48%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN---EVSDVR 83
K+ + T +AF +L AL+ +R+ + R V +F R+ K + + + S R
Sbjct: 60 KHQRRTRDAFVMLKNERDYQAALECHRKVLLNRSVYIFPISRKSMLKMLDSYERKRSQER 119
Query: 84 GGSPHRSIPRAKSHDEGKDSAVHTGILR---LRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
G P ++I KS+ EG H+G+ +R PF K ++ FF+ F + ED I++
Sbjct: 120 G-HPGQAITE-KSYREG-----HSGLKMCAYVRNFPFDVTKVEVQRFFERFDIDEDDIYL 172
Query: 141 TMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ G GEA V+F + E + KA + LG+ + L S E+M +
Sbjct: 173 LYDDKGVGLGEALVKFKSEEQAMKAENLNHQRFLGTEVL-LRLISEEQMQK 222
Score = 120 (47.3 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 86 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 145
SP R R++S G++ +H LR L + K D+ +FF D +S I I
Sbjct: 8 SPRRQRTRSQS-PSGQEYYIH-----LRNLSTNVEKRDLREFFPDLDISNKQIKILSEKH 61
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
R T +AFV N D +AA+ R L +R + +FP S + M
Sbjct: 62 QRRTRDAFVMLKNERDYQAALECHRKVLLNRSVYIFPISRKSM 104
Score = 118 (46.6 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK- 168
+RL+ LPF A ++I+DFF + + +S+ + N G P+G+A V N E++ A+ +
Sbjct: 341 IRLKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMTAINEL 400
Query: 169 -DRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 401 NDR-PIGPRKVKL 412
>UNIPROTKB|Q5JX62 [details] [associations]
symbol:RBM12 "RNA-binding protein 12" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR012677 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:AL109827 UniGene:Hs.700188 HGNC:HGNC:9898 IPI:IPI00644692
SMR:Q5JX62 STRING:Q5JX62 Ensembl:ENST00000424458 Uniprot:Q5JX62
Length = 291
Score = 127 (49.8 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 131 (51.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 48/141 (34%), Positives = 68/141 (48%)
Query: 57 GRRYVEVFRSKRQEYYKAIAN-EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
G Y+E F+++ KA+ + SDV+G S KS G+ + + +L + L
Sbjct: 418 GIAYIE-FKTEAIAE-KALEEAQGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNL 475
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT-LG 174
FSA +D + F+ V SI I N+ GRP G AFVEF N EDSK A+ T +
Sbjct: 476 AFSASEDSLQSVFEKAV----SIRIPQNN-GRPKGYAFVEFENVEDSKEALENCNNTDIE 530
Query: 175 SRYIELFPSSHEEMDEALSRG 195
R I L S ++ RG
Sbjct: 531 GRSIRLEYSQNDRERGGGGRG 551
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 132 (51.5 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 43/169 (25%), Positives = 83/169 (49%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 85
+ + + +G + L +V+ AL+ ++ MG RY+EVFR+ +K N+ +
Sbjct: 323 NSDGRNSGYVYVDLRSEAEVERALRLDKDYMGGRYIEVFRANN---FK---NDRRSAKRS 376
Query: 86 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF-KDFVLSEDSIHITMNS 144
++ R DE ++ +G L +R +P++ ++D+ + F K LSE I +
Sbjct: 377 EMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLT 436
Query: 145 DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS--SHEEMDE 190
+P G AFV + E++ +A+A+ D T R + + S E+ D+
Sbjct: 437 K-KPKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMASRLKKEKADQ 484
Score = 113 (44.8 bits), Expect = 0.00076, P = 0.00076
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++LRG PF+ + + +F L +I NSDGR +G +V+ + + + A+ D
Sbjct: 292 VKLRGAPFNVKEQQVKEFMMP--LKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLD 349
Query: 170 RMTLGSRYIELFPSSHEEMD 189
+ +G RYIE+F +++ + D
Sbjct: 350 KDYMGGRYIEVFRANNFKND 369
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 129 (50.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 46/162 (28%), Positives = 79/162 (48%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TG F L +V AL+R ++ +G +YVEV R + + + + D P +
Sbjct: 8 KSTGFIFVDLKSEAEVQKALKRKKEYIGGQYVEVSRCENAPK-ETVTAKTDD----QPWQ 62
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGR 147
R K DE ++ +G L +R LPF++ ++D+ F + LSE IH ++ +
Sbjct: 63 ---RMKRDDEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSE--IHFPIDRLTKK 117
Query: 148 PTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEM 188
P G AF+ + E + A A+ D R + L PS+ +++
Sbjct: 118 PKGFAFITYMIPEHAVKAYAEMDGQVFQGRMMHLLPSTIKKL 159
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 129 (50.5 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 46/162 (28%), Positives = 79/162 (48%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TG F L +V AL+R ++ +G +YVEV R + + + + D P +
Sbjct: 332 KSTGFIFVDLKSEAEVQKALKRKKEYIGGQYVEVSRCENAPK-ETVTAKTDD----QPWQ 386
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGR 147
R K DE ++ +G L +R LPF++ ++D+ F + LSE IH ++ +
Sbjct: 387 ---RMKRDDEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSE--IHFPIDRLTKK 441
Query: 148 PTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEM 188
P G AF+ + E + A A+ D R + L PS+ +++
Sbjct: 442 PKGFAFITYMIPEHAVKAYAEMDGQVFQGRMMHLLPSTIKKL 483
>RGD|1308928 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0040019 "positive regulation
of embryonic development" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473973 IPI:IPI00777247 Ensembl:ENSRNOT00000060041
UCSC:RGD:1308928 Uniprot:D3ZUN0
Length = 451
Score = 120 (47.3 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++LRG PF+ + ++++F L +I I N+ G TG FV+ ++ E+ K A+ +
Sbjct: 296 VKLRGAPFNVTEKNVLEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCN 353
Query: 170 RMTLGSRYIELF 181
R +G RYIE+F
Sbjct: 354 REYMGGRYIEVF 365
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 119 (46.9 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 45/158 (28%), Positives = 73/158 (46%)
Query: 43 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV-SDVRGGSPHRSIPRAKSHDEGK 101
L+V L + + G Y+E F+++ E KA+ + ++V G + KS E +
Sbjct: 393 LEVRLVLNKEGSSKGMAYIE-FKTEA-EAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 450
Query: 102 DSAVH--TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ L + L ++A ++ + + FK SI + N+ GRP G AFVEF A
Sbjct: 451 KGGGERESKTLIVNNLSYAASEETLQELFK----KATSIKMPQNNQGRPKGYAFVEFPTA 506
Query: 160 EDSKAAMAKDRMT-LGSRYIEL-FPSSHEEMDEALSRG 195
ED+K A+ T + R I L F S + +RG
Sbjct: 507 EDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARG 544
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 119 (46.9 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 45/158 (28%), Positives = 73/158 (46%)
Query: 43 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV-SDVRGGSPHRSIPRAKSHDEGK 101
L+V L + + G Y+E F+++ E KA+ + ++V G + KS E +
Sbjct: 395 LEVRLVLNKEGSSKGMAYIE-FKTEA-EAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 452
Query: 102 DSAVH--TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ L + L ++A ++ + + FK SI + N+ GRP G AFVEF A
Sbjct: 453 KGGGERESKTLIVNNLSYAASEETLQELFK----KATSIKMPQNNQGRPKGYAFVEFPTA 508
Query: 160 EDSKAAMAKDRMT-LGSRYIEL-FPSSHEEMDEALSRG 195
ED+K A+ T + R I L F S + +RG
Sbjct: 509 EDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARG 546
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 119 (46.9 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 45/158 (28%), Positives = 73/158 (46%)
Query: 43 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV-SDVRGGSPHRSIPRAKSHDEGK 101
L+V L + + G Y+E F+++ E KA+ + ++V G + KS E +
Sbjct: 395 LEVRLVLNKEGSSKGMAYIE-FKTEA-EAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 452
Query: 102 DSAVH--TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ L + L ++A ++ + + FK SI + N+ GRP G AFVEF A
Sbjct: 453 KGGGERESKTLIVNNLSYAASEETLQELFK----KATSIKMPQNNQGRPKGYAFVEFPTA 508
Query: 160 EDSKAAMAKDRMT-LGSRYIEL-FPSSHEEMDEALSRG 195
ED+K A+ T + R I L F S + +RG
Sbjct: 509 EDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARG 546
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 29/93 (31%), Positives = 50/93 (53%)
Query: 99 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPT-GEAFVEF 156
+G D + G L + GLP+S ++++M+ F F +SE +H+ ++ D R G AFV +
Sbjct: 218 DGSDDVLDAGRLFVHGLPYSTTEEELMEHFSKFGDISE--VHLVLDKDTRSCRGMAFVLY 275
Query: 157 ANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEM 188
E +K AM K D++ R + + P+ M
Sbjct: 276 LIPESAKMAMDKLDKLPFQGRTLHILPAKPRAM 308
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 100 (40.3 bits), Expect = 0.00027, P = 0.00027
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAK 168
L + GLPFS K+++ + K +D + + N G+P G A+VE+ N ++ S+A M
Sbjct: 42 LFISGLPFSCTKEELEEICKAHGTVKD-LRLVTNRAGKPKGLAYVEYENESQASQAVMKM 100
Query: 169 DRMTLGSRYIEL 180
D MT+ I++
Sbjct: 101 DGMTIKENIIKV 112
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 113 (44.8 bits), Expect = 0.00071, P = 0.00071
Identities = 45/164 (27%), Positives = 71/164 (43%)
Query: 29 NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH 88
N+ AF P V ALQ++ Q +G + + + + E +EV + G S
Sbjct: 207 NEDVAAAFVTFNRPPDVRRALQKDGQFLGGFKIGIEKIETPEP----EHEVIEEHGASLE 262
Query: 89 RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNSDGR 147
R K + ++ + TG L LR LP++ +DD+ FK + +SE + I + G
Sbjct: 263 S---RDKEEETVREKILETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKT-GA 318
Query: 148 PTGEAFVEFANAEDSKAAM-AKDRMTLGSRYIELFPSSHEEMDE 190
G A VEF E + AA A D R + + P + E
Sbjct: 319 CKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHILPGDEKRTKE 362
>UNIPROTKB|I3L8F5 [details] [associations]
symbol:I3L8F5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00620000087736 EMBL:CU861910
Ensembl:ENSSSCT00000030195 OMA:PENGSAM Uniprot:I3L8F5
Length = 194
Score = 103 (41.3 bits), Expect = 0.00081, P = 0.00081
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 106 HTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
H G I+ + GL F + + DI +FF L+ +H +++DG+ T EA VEF +D
Sbjct: 48 HGGHIMLMGGLHFHSTEKDIANFFS--TLNPVLVHTDISADGKET-EADVEFMTCKDPVF 104
Query: 165 AMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+M+KD+ +Y EL + E A+
Sbjct: 105 SMSKDKNNTLHQYFELLLNFSPENGSAM 132
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 196 196 0.00080 111 3 11 22 0.44 32
31 0.44 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 155
No. of states in DFA: 564 (60 KB)
Total size of DFA: 151 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.69u 0.11s 18.80t Elapsed: 00:00:01
Total cpu time: 18.72u 0.11s 18.83t Elapsed: 00:00:01
Start: Fri May 10 12:29:52 2013 End: Fri May 10 12:29:53 2013
WARNINGS ISSUED: 1