BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029263
(196 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225435437|ref|XP_002285426.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Vitis
vinifera]
Length = 258
Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 157/180 (87%), Positives = 172/180 (95%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVLFVHKN +FTGEAFCVLGYPLQV+FALQRNRQNMGRRYVEVFRSKRQEYYKAIA
Sbjct: 79 LDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 138
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEVSD RGGSP R+ P+AKS+DEGK+SA HTG+LRLRGLPFSA K+DIMDFFKDFVLSED
Sbjct: 139 NEVSDTRGGSPRRTAPKAKSNDEGKESAEHTGVLRLRGLPFSASKEDIMDFFKDFVLSED 198
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
SIH+T+NS+GRPTGEAFVEF NAEDSKAAMAKDRMTLGSRYIELFPSS EE+DEA++RGR
Sbjct: 199 SIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYIELFPSSLEELDEAVARGR 258
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 75 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 134
I ++ S GGSP + S ++RLRGLPF + D+ +FF S
Sbjct: 23 ITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFPVVRLRGLPFDCSEADVAEFFH----S 78
Query: 135 EDSIHIT-MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
D + + ++ +GR TGEAF + A+ ++R +G RY+E+F S +E +A++
Sbjct: 79 LDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 138
>gi|357460387|ref|XP_003600475.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
gi|355489523|gb|AES70726.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
Length = 259
Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 154/180 (85%), Positives = 169/180 (93%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVLFVHK KF+GE FCVLGYPLQVDFALQRNRQN+GRRYVEVFRSKRQEYYKAIA
Sbjct: 80 LDIVDVLFVHKGGKFSGEGFCVLGYPLQVDFALQRNRQNIGRRYVEVFRSKRQEYYKAIA 139
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEVSD RGGSP RS PRAKS+DEGKDSA HTG+LRLRGLPFSA KDDIMDFFK++VLSED
Sbjct: 140 NEVSDARGGSPRRSAPRAKSYDEGKDSAEHTGVLRLRGLPFSANKDDIMDFFKEYVLSED 199
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
SIHI MNS+GRP+GEA+VEF NA+DSKAAMAKDRMTLGSRYIELFPS+H EM++A+SRGR
Sbjct: 200 SIHIVMNSEGRPSGEAYVEFENADDSKAAMAKDRMTLGSRYIELFPSTHGEMEDAISRGR 259
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF + D+ +FF + + + ++ G+ +GE F A+ +
Sbjct: 58 VVRLRGLPFDCTETDVAEFFHGLDIVD---VLFVHKGGKFSGEGFCVLGYPLQVDFALQR 114
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
+R +G RY+E+F S +E +A++
Sbjct: 115 NRQNIGRRYVEVFRSKRQEYYKAIA 139
>gi|255544880|ref|XP_002513501.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
gi|223547409|gb|EEF48904.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
Length = 260
Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 158/180 (87%), Positives = 172/180 (95%), Gaps = 1/180 (0%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVLFVHK KFTGEAFCVLG PLQVDFALQ+NRQNMGRRYVEVFRSKRQ+YYKAIA
Sbjct: 82 LDIVDVLFVHKGGKFTGEAFCVLGCPLQVDFALQKNRQNMGRRYVEVFRSKRQDYYKAIA 141
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEVSD RGGSP R+ PRAKS+DEGKDSA HTG+LRLRGLPFSAGKDDIM+FFKDFVLSED
Sbjct: 142 NEVSDARGGSPRRA-PRAKSYDEGKDSAEHTGVLRLRGLPFSAGKDDIMEFFKDFVLSED 200
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
S+HITMNS+GRPTGEAFVEFA+AEDSKAAMAKDRMTLGSRYIELFPSS EE++EA++RGR
Sbjct: 201 SVHITMNSEGRPTGEAFVEFASAEDSKAAMAKDRMTLGSRYIELFPSSIEELEEAVTRGR 260
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF + D+ +FF + + + ++ G+ TGEAF A+ K
Sbjct: 60 VVRLRGLPFDCTETDVAEFFHGLDIVD---VLFVHKGGKFTGEAFCVLGCPLQVDFALQK 116
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
+R +G RY+E+F S ++ +A++
Sbjct: 117 NRQNMGRRYVEVFRSKRQDYYKAIA 141
>gi|224104153|ref|XP_002313339.1| predicted protein [Populus trichocarpa]
gi|222849747|gb|EEE87294.1| predicted protein [Populus trichocarpa]
Length = 253
Score = 325 bits (834), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 159/180 (88%), Positives = 170/180 (94%), Gaps = 1/180 (0%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVLFVHK KF+GEAFCVLGYPLQVDFALQ+NRQNMGRRYVEVFRSKRQ+YYK IA
Sbjct: 75 LDIVDVLFVHKGGKFSGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSKRQDYYKTIA 134
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEVS+ RG SP R+IPRAKS+DEGKDSA HTG+LRLRGLPFSA KDDIM+FFKDFVLSED
Sbjct: 135 NEVSESRG-SPRRNIPRAKSYDEGKDSAEHTGVLRLRGLPFSASKDDIMEFFKDFVLSED 193
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
SIHITMNS+GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS EE DEA+SRGR
Sbjct: 194 SIHITMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSVEESDEAVSRGR 253
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
H ++RLRGLPF + D+ +FF + + + ++ G+ +GEAF A
Sbjct: 50 HFPVVRLRGLPFDCTETDVAEFFHGLDIVD---VLFVHKGGKFSGEAFCVLGYPLQVDFA 106
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALS 193
+ K+R +G RY+E+F S ++ + ++
Sbjct: 107 LQKNRQNMGRRYVEVFRSKRQDYYKTIA 134
>gi|224059562|ref|XP_002299908.1| predicted protein [Populus trichocarpa]
gi|222847166|gb|EEE84713.1| predicted protein [Populus trichocarpa]
Length = 253
Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 159/180 (88%), Positives = 170/180 (94%), Gaps = 1/180 (0%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVLFVHK KFTGEAFCVLGYPLQVDFALQ+NRQNMGRRYVEVFRSKRQ+YYKAIA
Sbjct: 75 LDIVDVLFVHKGGKFTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSKRQDYYKAIA 134
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEVS+ RG SP R+I RAKS+DEGKD A HTG+LRLRGLPFSAGKDDIM+FFKDFVLSED
Sbjct: 135 NEVSESRG-SPRRNISRAKSYDEGKDLAEHTGVLRLRGLPFSAGKDDIMEFFKDFVLSED 193
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
IHITMNS+GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS EE+DEA+SRGR
Sbjct: 194 LIHITMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSIEELDEAVSRGR 253
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF + D+ +FF+ + + + ++ G+ TGEAF A+ K
Sbjct: 53 VVRLRGLPFDCTETDVAEFFRGLDIVD---VLFVHKGGKFTGEAFCVLGYPLQVDFALQK 109
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
+R +G RY+E+F S ++ +A++
Sbjct: 110 NRQNMGRRYVEVFRSKRQDYYKAIA 134
>gi|388504640|gb|AFK40386.1| unknown [Medicago truncatula]
Length = 259
Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 152/180 (84%), Positives = 166/180 (92%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVLFVHK KF+GE FCVLGYPLQVDFALQRNRQN+GRRYVEVFRSKRQEYYKAIA
Sbjct: 80 LDIVDVLFVHKGGKFSGEGFCVLGYPLQVDFALQRNRQNIGRRYVEVFRSKRQEYYKAIA 139
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEVSD RGGSP RS PRAK +DEGKDSA HTG+LRLRGLPF A KDDIMDFFK++VLSED
Sbjct: 140 NEVSDARGGSPRRSAPRAKPYDEGKDSAEHTGVLRLRGLPFFANKDDIMDFFKEYVLSED 199
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
SIHI MNS+GRP GEA+VEF NA+DSKAAMAKDRMTLGSRYIELFPS+H EM++A+SRGR
Sbjct: 200 SIHIVMNSEGRPFGEAYVEFENADDSKAAMAKDRMTLGSRYIELFPSTHGEMEDAISRGR 259
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF + D+ +FF + + + ++ G+ +GE F A+ +
Sbjct: 58 VVRLRGLPFDCTETDVAEFFHGLDIVD---VLFVHKGGKFSGEGFCVLGYPLQVDFALQR 114
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
+R +G RY+E+F S +E +A++
Sbjct: 115 NRQNIGRRYVEVFRSKRQEYYKAIA 139
>gi|356527218|ref|XP_003532209.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Glycine
max]
Length = 260
Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 154/180 (85%), Positives = 164/180 (91%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVLFVHK KFTGE FCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA
Sbjct: 81 LDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 140
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEVSD RGGSP RS RAKS+DEGKDSA HTG+LRLRGLPFSA KDDIM+FFKDF L ED
Sbjct: 141 NEVSDARGGSPRRSASRAKSYDEGKDSAEHTGVLRLRGLPFSASKDDIMEFFKDFGLPED 200
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
SIHI MNS+GRP+GEA+ EFA+AEDSKAAM KDRMTLGSRYIELFPSS EM+EA+SRGR
Sbjct: 201 SIHIIMNSEGRPSGEAYAEFASAEDSKAAMVKDRMTLGSRYIELFPSSPGEMEEAISRGR 260
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF + D+ +FF + + + ++ G+ TGE F A+ +
Sbjct: 59 VVRLRGLPFDCTETDVAEFFHGLDIVD---VLFVHKGGKFTGEGFCVLGYPLQVDFALQR 115
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
+R +G RY+E+F S +E +A++
Sbjct: 116 NRQNMGRRYVEVFRSKRQEYYKAIA 140
>gi|358248784|ref|NP_001239939.1| uncharacterized protein LOC100805177 [Glycine max]
gi|255644706|gb|ACU22855.1| unknown [Glycine max]
Length = 261
Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 153/180 (85%), Positives = 164/180 (91%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVLFVHK KFTGE FCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA
Sbjct: 82 LDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 141
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEVSD RGGSP RS RAKS+DEGK+SA HTG+LRLRGLPFSA KDDIM+FFKDF L ED
Sbjct: 142 NEVSDARGGSPRRSASRAKSYDEGKESAEHTGVLRLRGLPFSASKDDIMEFFKDFGLPED 201
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
SIHI MNS+GRP+GEA+ EF +AEDSKAAM KDRMTLGSRYIELFPSSH EM+EA+SRGR
Sbjct: 202 SIHIIMNSEGRPSGEAYAEFESAEDSKAAMIKDRMTLGSRYIELFPSSHGEMEEAISRGR 261
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF + D+ +FF + + + ++ G+ TGE F A+ +
Sbjct: 60 VVRLRGLPFDCTETDVAEFFHGLDIVD---VLFVHKGGKFTGEGFCVLGYPLQVDFALQR 116
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
+R +G RY+E+F S +E +A++
Sbjct: 117 NRQNMGRRYVEVFRSKRQEYYKAIA 141
>gi|449448717|ref|XP_004142112.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
gi|449502606|ref|XP_004161690.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Cucumis sativus]
Length = 260
Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 149/180 (82%), Positives = 167/180 (92%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD+LFVHKN KFTGE FCVLGYPLQVDFALQRNRQNMGRRYVE+FRS RQEYYKA+A
Sbjct: 81 LDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVA 140
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEV D RGGSP RS PR+K +DE KDSA HTG+LRLRGLP+SAGKDDI+DFFK F LSED
Sbjct: 141 NEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSED 200
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
SIH+T+NS+GRP+GEAFVEF+N +DSKAAM+KDRMTLGSRYIELFPSSHEE+DEA+SRGR
Sbjct: 201 SIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 260
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT-MNSDGRPTGEAFVEFANAEDSKAAMA 167
++RLRGLPF + D+++FF D + I ++ +G+ TGE F A+
Sbjct: 59 VVRLRGLPFDCMETDVVEFFHGL----DIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQ 114
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALS 193
++R +G RY+E+F S+ +E +A++
Sbjct: 115 RNRQNMGRRYVEIFRSNRQEYYKAVA 140
>gi|255645750|gb|ACU23368.1| unknown [Glycine max]
Length = 260
Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 152/180 (84%), Positives = 161/180 (89%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVLFVHK KFTGE FCVLGYPLQVDFALQ NRQNMGRRYVEVFRSKRQEYYKAIA
Sbjct: 81 LDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQGNRQNMGRRYVEVFRSKRQEYYKAIA 140
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEVSD RGGSP RS RAKS+DEGKDSA HTG+LRLRGLPF A KDDIM+FFKDF L ED
Sbjct: 141 NEVSDARGGSPRRSASRAKSYDEGKDSAEHTGVLRLRGLPFFASKDDIMEFFKDFGLPED 200
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
SIHI MNS+GRP GEA+ EFA+AEDSKAAM KDRMTLGSRYIELFPSS EM+EA+SRGR
Sbjct: 201 SIHIIMNSEGRPFGEAYAEFASAEDSKAAMVKDRMTLGSRYIELFPSSPGEMEEAISRGR 260
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF + D+ +FF + + + ++ G+ TGE F A+
Sbjct: 59 VVRLRGLPFDCTETDVAEFFHGLDIVD---VLFVHKGGKFTGEGFCVLGYPLQVDFALQG 115
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
+R +G RY+E+F S +E +A++
Sbjct: 116 NRQNMGRRYVEVFRSKRQEYYKAIA 140
>gi|297746312|emb|CBI16368.3| unnamed protein product [Vitis vinifera]
Length = 235
Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/180 (78%), Positives = 152/180 (84%), Gaps = 23/180 (12%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVLFVHKN +FTGEAFCVLGYPLQV+FALQRNRQNMGRRYVEVFRSKRQEYYKAIA
Sbjct: 79 LDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 138
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEVSD RGG +LRLRGLPFSA K+DIMDFFKDFVLSED
Sbjct: 139 NEVSDTRGG-----------------------VLRLRGLPFSASKEDIMDFFKDFVLSED 175
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
SIH+T+NS+GRPTGEAFVEF NAEDSKAAMAKDRMTLGSRYIELFPSS EE+DEA++RGR
Sbjct: 176 SIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYIELFPSSLEELDEAVARGR 235
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 75 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 134
I ++ S GGSP + S ++RLRGLPF + D+ +FF S
Sbjct: 23 ITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFPVVRLRGLPFDCSEADVAEFFH----S 78
Query: 135 EDSIHIT-MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
D + + ++ +GR TGEAF + A+ ++R +G RY+E+F S +E +A++
Sbjct: 79 LDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 138
>gi|297830788|ref|XP_002883276.1| hypothetical protein ARALYDRAFT_318838 [Arabidopsis lyrata subsp.
lyrata]
gi|297329116|gb|EFH59535.1| hypothetical protein ARALYDRAFT_318838 [Arabidopsis lyrata subsp.
lyrata]
Length = 356
Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/213 (66%), Positives = 162/213 (76%), Gaps = 33/213 (15%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+D+VDVLFVHKNNK TGEAFCVLGYPLQVDFALQ+NRQNMGRRYVEVFRS +QEYYKAIA
Sbjct: 144 LDVVDVLFVHKNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSTKQEYYKAIA 203
Query: 77 NEVSDVR---------------------------------GGSPHRSIPRAKSHDEGKDS 103
NEV++ R G SP R + RA+S D+GK+
Sbjct: 204 NEVAESRVHGMASGGGGGGGGGTGGGNGGGGGGGGGRISGGSSPRRHVQRARSSDDGKED 263
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 163
HTG LRLRGLPFSAGK+DI+DFFKDF LSEDS+H+T+N +GRPTGEAFVEF NAE+S+
Sbjct: 264 IEHTGTLRLRGLPFSAGKEDILDFFKDFELSEDSVHVTVNGEGRPTGEAFVEFRNAEESR 323
Query: 164 AAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
AAM KDR TLGSRYIELFPSS EE++EALSRGR
Sbjct: 324 AAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 356
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 111 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 170
RLRGLPF + D+++FF + D + + N+ + TGEAF A+ K+R
Sbjct: 124 RLRGLPFDCAEIDVVEFFHGLDVV-DVLFVHKNN--KVTGEAFCVLGYPLQVDFALQKNR 180
Query: 171 MTLGSRYIELFPSSHEEMDEALS 193
+G RY+E+F S+ +E +A++
Sbjct: 181 QNMGRRYVEVFRSTKQEYYKAIA 203
>gi|9294416|dbj|BAB02497.1| unnamed protein product [Arabidopsis thaliana]
Length = 278
Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/213 (66%), Positives = 162/213 (76%), Gaps = 33/213 (15%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+D+VDVLFVH+NNK TGEAFCVLGYPLQVDFALQ+NRQNMGRRYVEVFRS +QEYYKAIA
Sbjct: 66 LDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSTKQEYYKAIA 125
Query: 77 NEVSDVR---------------------------------GGSPHRSIPRAKSHDEGKDS 103
NEV++ R G SP R + RA+S D+GK+
Sbjct: 126 NEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRRHVQRARSSDDGKED 185
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 163
HTGILRLRGLPFSAGK+DI+DFFKDF LSED +H+T+N +GRPTGEAFVEF NAEDS+
Sbjct: 186 IEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSR 245
Query: 164 AAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
AAM KDR TLGSRYIELFPSS EE++EALSRGR
Sbjct: 246 AAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 278
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 111 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 170
RLRGLPF + D+++FF + D + + N+ + TGEAF A+ K+R
Sbjct: 46 RLRGLPFDCAELDVVEFFHGLDVV-DVLFVHRNN--KVTGEAFCVLGYPLQVDFALQKNR 102
Query: 171 MTLGSRYIELFPSSHEEMDEALS 193
+G RY+E+F S+ +E +A++
Sbjct: 103 QNMGRRYVEVFRSTKQEYYKAIA 125
>gi|82621148|gb|ABB86262.1| unknown [Solanum tuberosum]
Length = 364
Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/180 (74%), Positives = 155/180 (86%), Gaps = 4/180 (2%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+D+VDVL VHK +FTGEA+CVLGYPLQVDFALQRNRQN+GRRYVEVFRSK++EYYKAIA
Sbjct: 85 LDVVDVLLVHKGGRFTGEAYCVLGYPLQVDFALQRNRQNIGRRYVEVFRSKKEEYYKAIA 144
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEV D RGGS +PRA+S DE K HTG+L LRGLPFSA K+DI+DFFKDF L E
Sbjct: 145 NEVYDSRGGS----VPRARSADESKTLPEHTGVLWLRGLPFSASKEDIIDFFKDFELPEK 200
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
SIHIT +GRPTGEAFVEFA+A+DS+AAMAKDRMT+G+RYIELF SS EE++EA+SRGR
Sbjct: 201 SIHITATFEGRPTGEAFVEFASADDSRAAMAKDRMTIGNRYIELFASSSEELEEAVSRGR 260
Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 116/165 (70%), Gaps = 13/165 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TGEAF A+ ++R +G RY+E+F S +E +A++ RG + +
Sbjct: 213 TGEAFVEFASADDSRAAMAKDRMTIGNRYIELFASSSEELEEAVS------RGRVLEKPV 266
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
+G+D T ILR+RGLPFSAGKDDIMDFFKDF L+ED+IH+T SDGRPTGE
Sbjct: 267 -------DGRDPNEVTSILRMRGLPFSAGKDDIMDFFKDFALTEDAIHVTFLSDGRPTGE 319
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
AFVEFA+ +D+KAA+AKDRMTLGSRY+ELFPSS E+M+ A+SRGR
Sbjct: 320 AFVEFASTDDAKAALAKDRMTLGSRYVELFPSSIEDMNHAISRGR 364
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM-NSDGRPTGEAFVEFANAEDSKAAMA 167
++RLRGLPF + +I DF D + + + + GR TGEA+ A+
Sbjct: 63 VVRLRGLPFDCSETEIADFLHGL----DVVDVLLVHKGGRFTGEAYCVLGYPLQVDFALQ 118
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALS 193
++R +G RY+E+F S EE +A++
Sbjct: 119 RNRQNIGRRYVEVFRSKKEEYYKAIA 144
>gi|334185502|ref|NP_188725.3| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|332642915|gb|AEE76436.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 292
Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 142/213 (66%), Positives = 162/213 (76%), Gaps = 33/213 (15%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+D+VDVLFVH+NNK TGEAFCVLGYPLQVDFALQ+NRQNMGRRYVEVFRS +QEYYKAIA
Sbjct: 80 LDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSTKQEYYKAIA 139
Query: 77 NEVSDVR---------------------------------GGSPHRSIPRAKSHDEGKDS 103
NEV++ R G SP R + RA+S D+GK+
Sbjct: 140 NEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRRHVQRARSSDDGKED 199
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 163
HTGILRLRGLPFSAGK+DI+DFFKDF LSED +H+T+N +GRPTGEAFVEF NAEDS+
Sbjct: 200 IEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSR 259
Query: 164 AAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
AAM KDR TLGSRYIELFPSS EE++EALSRGR
Sbjct: 260 AAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 111 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 170
RLRGLPF + D+++FF + D + + N+ + TGEAF A+ K+R
Sbjct: 60 RLRGLPFDCAELDVVEFFHGLDVV-DVLFVHRNN--KVTGEAFCVLGYPLQVDFALQKNR 116
Query: 171 MTLGSRYIELFPSSHEEMDEALS 193
+G RY+E+F S+ +E +A++
Sbjct: 117 QNMGRRYVEVFRSTKQEYYKAIA 139
>gi|147832351|emb|CAN73277.1| hypothetical protein VITISV_031233 [Vitis vinifera]
Length = 260
Score = 242 bits (617), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 124/180 (68%), Positives = 137/180 (76%), Gaps = 35/180 (19%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVLFVHKN RSKRQEYYKAIA
Sbjct: 116 LDIVDVLFVHKNG-----------------------------------RSKRQEYYKAIA 140
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
NEVSD RGGSP R+ P+AKS+DEGK+SA HTG+LRLRGLPFSA K+DIMDFFKDFVLSED
Sbjct: 141 NEVSDTRGGSPRRTAPKAKSNDEGKESAEHTGVLRLRGLPFSASKEDIMDFFKDFVLSED 200
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
SIH+T+NS+GRPTGEAFVEF NAEDSKAAMAKDRMTLGSRYIELFPSS EE+DEA++RGR
Sbjct: 201 SIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYIELFPSSLEELDEAVARGR 260
>gi|294460097|gb|ADE75631.1| unknown [Picea sitchensis]
Length = 256
Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/183 (59%), Positives = 137/183 (74%), Gaps = 6/183 (3%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+D+VDVL VHK +F+GE F V G P+QVDFALQR+RQNMGRRY+EVFR K+Q+YY AIA
Sbjct: 76 LDVVDVLLVHKQGRFSGEGFVVFGAPMQVDFALQRDRQNMGRRYIEVFRCKKQDYYNAIA 135
Query: 77 NEVSDVRGG---SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
EV++ +GG +P + S KD HTGIL+LRGLPFS K DI++FF D+ L
Sbjct: 136 AEVNEPKGGDDAAPPSGYSKGSSD---KDHMEHTGILKLRGLPFSVSKRDIIEFFTDYDL 192
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
SE ++HI +SDGR TGEAFVEF+N DSKAAM+KD+M +G+RY+ELFPS+ EE A S
Sbjct: 193 SETNVHIVSHSDGRATGEAFVEFSNDTDSKAAMSKDKMMIGTRYVELFPSTREEASRAAS 252
Query: 194 RGR 196
R R
Sbjct: 253 RSR 255
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM-NSDGRPTGEAFVEFANAEDSKAAMA 167
++RLRGLPF+ +D+ +FF D + + + + GR +GE FV F A+
Sbjct: 54 VVRLRGLPFNCSDNDVCEFFAGL----DVVDVLLVHKQGRFSGEGFVVFGAPMQVDFALQ 109
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALS 193
+DR +G RYIE+F ++ A++
Sbjct: 110 RDRQNMGRRYIEVFRCKKQDYYNAIA 135
>gi|294461466|gb|ADE76294.1| unknown [Picea sitchensis]
Length = 262
Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 109/183 (59%), Positives = 137/183 (74%), Gaps = 6/183 (3%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+D+VDVL VHK +F+GE F V G P+QVDFALQR+RQNMGRRY+EVFR K+Q+YY AIA
Sbjct: 82 LDVVDVLLVHKQGRFSGEGFVVFGAPMQVDFALQRDRQNMGRRYIEVFRCKKQDYYNAIA 141
Query: 77 NEVSDVRGG---SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
EV++ +GG +P + S KD HTGIL+LRGLPFS K DI++FF D+ L
Sbjct: 142 AEVNEPKGGDDAAPPSGYSKGSSD---KDHMEHTGILKLRGLPFSVSKRDIIEFFTDYDL 198
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
SE ++HI +SDGR TGEAFVEF+N DSKAAM+KD+M +G+RY+ELFPS+ EE A S
Sbjct: 199 SETNVHIVSHSDGRATGEAFVEFSNDTDSKAAMSKDKMMIGTRYVELFPSTREEASRAAS 258
Query: 194 RGR 196
R R
Sbjct: 259 RSR 261
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM-NSDGRPTGEAFVEFANAEDSKAAMA 167
++RLRGLPF+ +D+ +FF D + + + + GR +GE FV F A+
Sbjct: 60 VVRLRGLPFNCSDNDVCEFFAGL----DVVDVLLVHKQGRFSGEGFVVFGAPMQVDFALQ 115
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALS 193
+DR +G RYIE+F ++ A++
Sbjct: 116 RDRQNMGRRYIEVFRCKKQDYYNAIA 141
>gi|302789778|ref|XP_002976657.1| hypothetical protein SELMODRAFT_416554 [Selaginella moellendorffii]
gi|300155695|gb|EFJ22326.1| hypothetical protein SELMODRAFT_416554 [Selaginella moellendorffii]
Length = 287
Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 140/200 (70%), Gaps = 20/200 (10%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+D+VDVL V K +F+GEAF VLG P+QVDFALQRNRQNMGRRYVEVFRSK+Q+YY A+A
Sbjct: 88 LDVVDVLLVRKQGRFSGEAFVVLGAPMQVDFALQRNRQNMGRRYVEVFRSKKQDYYSAVA 147
Query: 77 NEVSDVRGGSPHRSIPRA--------------------KSHDEGKDSAVHTGILRLRGLP 116
EV+D R G ++ + K+ KD A HTG+L+LRGLP
Sbjct: 148 TEVNDPRSGDVLATLASSAAGGGGGGGGGGGGGGGGSGKNSLCDKDLAEHTGVLKLRGLP 207
Query: 117 FSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
FSA K DI++FF++F L EDS+ I ++SDGR TGEA+V F DSKAAM KD+MTLG+R
Sbjct: 208 FSASKRDIVEFFREFGLKEDSVQIVVHSDGRATGEAYVFFLGPGDSKAAMNKDKMTLGNR 267
Query: 177 YIELFPSSHEEMDEALSRGR 196
Y+ELFPSS EE + A S+ R
Sbjct: 268 YVELFPSSREEANRAASKSR 287
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM-NSDGRPTGEAFVEFANAEDSKAAMA 167
++RLRGLPF+ + D+ +FF D + + + GR +GEAFV A+
Sbjct: 66 VVRLRGLPFNCSESDVFEFFAGL----DVVDVLLVRKQGRFSGEAFVVLGAPMQVDFALQ 121
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALS 193
++R +G RY+E+F S ++ A++
Sbjct: 122 RNRQNMGRRYVEVFRSKKQDYYSAVA 147
>gi|302782846|ref|XP_002973196.1| hypothetical protein SELMODRAFT_413714 [Selaginella moellendorffii]
gi|300158949|gb|EFJ25570.1| hypothetical protein SELMODRAFT_413714 [Selaginella moellendorffii]
Length = 289
Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/202 (55%), Positives = 140/202 (69%), Gaps = 22/202 (10%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+D+VDVL V K +F+GEAF VLG P+QVDFALQRNRQNMGRRYVEVFRSK+Q+YY A+A
Sbjct: 88 LDVVDVLLVRKQGRFSGEAFVVLGAPMQVDFALQRNRQNMGRRYVEVFRSKKQDYYSAVA 147
Query: 77 NEVSDVRGGSPHRSIPRA----------------------KSHDEGKDSAVHTGILRLRG 114
EV+D R G ++ + K+ KD A HTG+L+LRG
Sbjct: 148 TEVNDPRSGDVLATLASSAAGGGGGGGGSGGGGGGGGSSGKNSLCDKDLAEHTGVLKLRG 207
Query: 115 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 174
LPFSA K DI++FF++F L EDS+ I ++SDGR TGEA+V F DSKAAM KD+MTLG
Sbjct: 208 LPFSASKRDIVEFFREFGLKEDSVQIVVHSDGRATGEAYVFFLGPGDSKAAMNKDKMTLG 267
Query: 175 SRYIELFPSSHEEMDEALSRGR 196
+RY+ELFPSS EE + A S+ R
Sbjct: 268 NRYVELFPSSREEANRAASKSR 289
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 62 EVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG------ILRLRGL 115
EV +KRQ + + G SPH + A S G G ++RLRGL
Sbjct: 18 EVAAAKRQR----LLDTAGSYFGSSPHATAAHA-SFMYGGPGFAFLGQPRPFPVVRLRGL 72
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITM-NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 174
PF+ + D+ +FF D + + + GR +GEAFV A+ ++R +G
Sbjct: 73 PFNCSESDVFEFFAGL----DVVDVLLVRKQGRFSGEAFVVLGAPMQVDFALQRNRQNMG 128
Query: 175 SRYIELFPSSHEEMDEALS 193
RY+E+F S ++ A++
Sbjct: 129 RRYVEVFRSKKQDYYSAVA 147
>gi|294461682|gb|ADE76400.1| unknown [Picea sitchensis]
Length = 265
Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/183 (55%), Positives = 134/183 (73%), Gaps = 6/183 (3%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+D+VD L VHK +F+GE F + P+QVDFALQR+RQNMGRRY+EVFR K+Q+YY A+A
Sbjct: 85 LDVVDALLVHKQGRFSGEGFVLFRSPMQVDFALQRDRQNMGRRYIEVFRCKKQDYYNAVA 144
Query: 77 NEVSDVRGG---SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
EV++ + G +P + S KD HTG L+LRGLPFS + DI++FFKD+ L
Sbjct: 145 AEVNEPKAGDDAAPPSGYSKGSSE---KDHMEHTGFLKLRGLPFSVSRRDIVEFFKDYQL 201
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
E ++HI +SDGR TGEAFVEF++A DSK AM+KD+MT+G+RY+ELFPS+ EE A S
Sbjct: 202 KEKNVHIVTHSDGRATGEAFVEFSSAADSKDAMSKDKMTIGTRYVELFPSTQEEASRAAS 261
Query: 194 RGR 196
R R
Sbjct: 262 RSR 264
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ + DI +FF + + + ++ GR +GE FV F + A+ +
Sbjct: 63 VVRLRGLPFNCSESDICEFFAGLDVVD---ALLVHKQGRFSGEGFVLFRSPMQVDFALQR 119
Query: 169 DRMTLGSRYIELF 181
DR +G RYIE+F
Sbjct: 120 DRQNMGRRYIEVF 132
>gi|115484017|ref|NP_001065670.1| Os11g0133600 [Oryza sativa Japonica Group]
gi|77548595|gb|ABA91392.1| heterogeneous nuclear ribonucleoprotein, putative, expressed [Oryza
sativa Japonica Group]
gi|113644374|dbj|BAF27515.1| Os11g0133600 [Oryza sativa Japonica Group]
gi|215764972|dbj|BAG86669.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222615462|gb|EEE51594.1| hypothetical protein OsJ_32846 [Oryza sativa Japonica Group]
Length = 298
Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/185 (56%), Positives = 130/185 (70%), Gaps = 7/185 (3%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR K+QEYY AIA
Sbjct: 115 LDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 174
Query: 77 NEVSDVRGG-----SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
EV+ +GG H PR K E K S +T +L+LRGLP+SA +DI+ FF ++
Sbjct: 175 AEVN--QGGFFDSEYRHSPPPRPKKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEY 232
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
L+E+++HI DG+ TGEAFVEF AE +K AM KD+MT+G+RY+ELFPS+ EE A
Sbjct: 233 ELTEENVHIAYRPDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRA 292
Query: 192 LSRGR 196
SR R
Sbjct: 293 KSRAR 297
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 100 GKDSAVHT-GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 158
G +SA+ +RLRGLPF D +D FK FV + + ++ +GR TGEAFV F +
Sbjct: 83 GANSAIQNFPGVRLRGLPFDC---DDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPS 139
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
A ++ A+ ++R +G RY+E+F +E A++
Sbjct: 140 AMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 174
>gi|224084107|ref|XP_002307213.1| predicted protein [Populus trichocarpa]
gi|222856662|gb|EEE94209.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/184 (57%), Positives = 137/184 (74%), Gaps = 5/184 (2%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVL V+K+ +FTGEAF V P+QV+FALQR+RQNMGRRYVEVFR KRQ+YY A+A
Sbjct: 74 LDIVDVLLVNKSGRFTGEAFVVFAGPMQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA 133
Query: 77 NEVS--DVRGGSPHRSIP--RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
EV+ + H S P RAK + KD +T IL++RGLPFSA K +I++FFKDF
Sbjct: 134 AEVNYEGIYDNDYHGSPPPSRAKRFSD-KDQMEYTEILKMRGLPFSAKKAEIIEFFKDFK 192
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
L ++ IHI DG+ TGEA+VEF +AE++K AM+KD+MT+GSRY+ELFPS+ +E A
Sbjct: 193 LIDERIHIACRPDGKATGEAYVEFISAEEAKRAMSKDKMTIGSRYVELFPSTQDEARRAE 252
Query: 193 SRGR 196
SR R
Sbjct: 253 SRSR 256
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ +I+ FF + + + +N GR TGEAFV FA + A+ +
Sbjct: 52 VVRLRGLPFNCSDVEILKFFAGLDIVD---VLLVNKSGRFTGEAFVVFAGPMQVEFALQR 108
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F ++ A++
Sbjct: 109 DRQNMGRRYVEVFRCKRQDYYNAVA 133
>gi|413946699|gb|AFW79348.1| hypothetical protein ZEAMMB73_203104 [Zea mays]
Length = 242
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 131/187 (70%), Gaps = 9/187 (4%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L V+KN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR K+QEYY AIA
Sbjct: 57 LDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 116
Query: 77 NEVSDVRGG-------SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
NEVS +GG K E K S +T +L+LRGLP+SA +DI+ FF
Sbjct: 117 NEVS--QGGYFESECRRSSPPPRPPKKTAEDKGSMEYTEVLKLRGLPYSATTEDIIKFFL 174
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
++ L+E+++HI + SDG+ TGEAFVEF AE +K AM KD+MT+G+RY+ELFPS+ EE
Sbjct: 175 EYELTEENVHIAIRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEAS 234
Query: 190 EALSRGR 196
A +RGR
Sbjct: 235 RARTRGR 241
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 103 SAVHTGI-----LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
+ TGI +RLRGLPF DI FF + + + +N +GR TGEAFV F
Sbjct: 24 AGASTGIQNFPGVRLRGLPFDCNDIDICKFFVGLDIVD---CLLVNKNGRFTGEAFVVFP 80
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
A ++ A+ ++R +G RY+E+F +E A++
Sbjct: 81 TAMQTEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 116
>gi|255561415|ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
gi|223539109|gb|EEF40705.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
Length = 264
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 133/187 (71%), Gaps = 11/187 (5%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVL V+KN +FTGEAF V +QV+FALQR+RQNMGRRYVEVFR KRQ+YY A+A
Sbjct: 81 LDIVDVLLVNKNGRFTGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA 140
Query: 77 NEV-------SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
EV +D G P P KD +T IL++RGLPFSA K +I++FFK
Sbjct: 141 AEVNYEGIYDTDYHGSPP----PSKAKRFSDKDQLEYTEILKMRGLPFSAKKPEIIEFFK 196
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
+F L ED IHI DG+ TGEA+VEFA+A+++K AM+KD+MT+GSRY+ELFPS+ +E
Sbjct: 197 EFELVEDRIHIACRPDGKATGEAYVEFASADEAKRAMSKDKMTIGSRYVELFPSTPDEAR 256
Query: 190 EALSRGR 196
A SR R
Sbjct: 257 RAESRSR 263
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI FF + + + +N +GR TGEAFV FA A + A+ +
Sbjct: 59 VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFTGEAFVVFAGAMQVEFALQR 115
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F ++ A++
Sbjct: 116 DRQNMGRRYVEVFRCKRQDYYNAVA 140
>gi|238013930|gb|ACR38000.1| unknown [Zea mays]
gi|413946698|gb|AFW79347.1| RNA binding protein [Zea mays]
Length = 295
Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 131/187 (70%), Gaps = 9/187 (4%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L V+KN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR K+QEYY AIA
Sbjct: 110 LDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 169
Query: 77 NEVSDVRGG-------SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
NEVS +GG K E K S +T +L+LRGLP+SA +DI+ FF
Sbjct: 170 NEVS--QGGYFESECRRSSPPPRPPKKTAEDKGSMEYTEVLKLRGLPYSATTEDIIKFFL 227
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
++ L+E+++HI + SDG+ TGEAFVEF AE +K AM KD+MT+G+RY+ELFPS+ EE
Sbjct: 228 EYELTEENVHIAIRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEAS 287
Query: 190 EALSRGR 196
A +RGR
Sbjct: 288 RARTRGR 294
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 71 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-----LRLRGLPFSAGKDDIM 125
Y+ A+ + GG P S+ G + TGI +RLRGLPF DI
Sbjct: 50 YFGAMGSNTGGASGGFYQ---PFNSSNLAG--AGASTGIQNFPGVRLRGLPFDCNDIDIC 104
Query: 126 DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185
FF + + + +N +GR TGEAFV F A ++ A+ ++R +G RY+E+F
Sbjct: 105 KFFVGLDIVD---CLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVFRCKK 161
Query: 186 EEMDEALS 193
+E A++
Sbjct: 162 QEYYSAIA 169
>gi|449491253|ref|XP_004158841.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
Length = 256
Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 106/187 (56%), Positives = 133/187 (71%), Gaps = 12/187 (6%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVL V+KN +F GEAF V +QV+FALQR+RQNMGRRYVEVFR KRQ+YY A+A
Sbjct: 74 LDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA 133
Query: 77 NEVS-------DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
EV+ D G P PR K + KD +T IL+LRGLPFS K +I++FF
Sbjct: 134 AEVNYEGIYDNDYHGSPP----PRQKRFSD-KDQMEYTEILKLRGLPFSVTKSNIIEFFG 188
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
+F L+ED IHI DG+ TGEA+VEFA+AE++K AM+KD+MT+GSRY+ELFPS+ E
Sbjct: 189 EFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEAR 248
Query: 190 EALSRGR 196
A SR R
Sbjct: 249 RAESRSR 255
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI FF + + + +N +GR GEAFV FA + + A+ +
Sbjct: 52 VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSVQVEFALQR 108
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F ++ A++
Sbjct: 109 DRQNMGRRYVEVFRCKRQDYYNAVA 133
>gi|449434084|ref|XP_004134826.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
Length = 263
Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 106/187 (56%), Positives = 133/187 (71%), Gaps = 12/187 (6%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVL V+KN +F GEAF V +QV+FALQR+RQNMGRRYVEVFR KRQ+YY A+A
Sbjct: 81 LDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA 140
Query: 77 NEVS-------DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
EV+ D G P PR K + KD +T IL+LRGLPFS K +I++FF
Sbjct: 141 AEVNYEGIYDNDYHGSPP----PRQKRFSD-KDQMEYTEILKLRGLPFSVTKSNIIEFFG 195
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
+F L+ED IHI DG+ TGEA+VEFA+AE++K AM+KD+MT+GSRY+ELFPS+ E
Sbjct: 196 EFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEAR 255
Query: 190 EALSRGR 196
A SR R
Sbjct: 256 RAESRSR 262
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI FF + + + +N +GR GEAFV FA + + A+ +
Sbjct: 59 VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSVQVEFALQR 115
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F ++ A++
Sbjct: 116 DRQNMGRRYVEVFRCKRQDYYNAVA 140
>gi|357143320|ref|XP_003572879.1| PREDICTED: G-rich sequence factor 1-like isoform 2 [Brachypodium
distachyon]
Length = 274
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/186 (56%), Positives = 135/186 (72%), Gaps = 8/186 (4%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L VHKN +F+GEAF V +Q +FAL RNRQNMGRRYVEVFR K+QEYY A+A
Sbjct: 90 LDIVDCLLVHKNGRFSGEAFVVFPSTMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAVA 149
Query: 77 NEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
+EV+ +GG S +R PR K E K S +T +L+LRGLP+SA +DI+ FF +
Sbjct: 150 SEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMDYTEVLKLRGLPYSATIEDIIKFFVE 207
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ L+ED++HI SDG+ TGEAFVEF AE +K AM KD+MT+G+RY+ELFPS+ EE
Sbjct: 208 YELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASR 267
Query: 191 ALSRGR 196
A SRGR
Sbjct: 268 AKSRGR 273
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Query: 103 SAVHTGI-----LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
+ V++GI +RLRGLPF DI+ FF + + + ++ +GR +GEAFV F
Sbjct: 57 AGVNSGIQSFPGVRLRGLPFDCEDLDIIKFFVGLDIVD---CLLVHKNGRFSGEAFVVFP 113
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+ ++ A+ ++R +G RY+E+F +E A++
Sbjct: 114 STMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAVA 149
>gi|359476979|ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory protein 2-like [Vitis
vinifera]
Length = 264
Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/183 (55%), Positives = 132/183 (72%), Gaps = 3/183 (1%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVL V+K+ +F+GEA+ V +Q DFALQR+RQNMGRRYVEVFR K+Q+YY A+A
Sbjct: 81 LDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVEVFRCKKQDYYHAVA 140
Query: 77 NEVS--DVRGGSPHRSIPRAKSHD-EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
+EV+ + H S P ++S KD HT IL+LRGLPFS K I++FF DF L
Sbjct: 141 SEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLRGLPFSVKKSQILEFFGDFEL 200
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+D +HI DG+ TGEA+VEFA+AE++K AM KD+MT+GSRY+ELFPS+ +E A S
Sbjct: 201 GDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELFPSTPDEARRAES 260
Query: 194 RGR 196
R R
Sbjct: 261 RSR 263
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI FF + + + +N GR +GEA+V FA + + A+ +
Sbjct: 59 VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKSGRFSGEAYVVFAGSMQADFALQR 115
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F ++ A++
Sbjct: 116 DRQNMGRRYVEVFRCKKQDYYHAVA 140
>gi|147834707|emb|CAN70556.1| hypothetical protein VITISV_016468 [Vitis vinifera]
Length = 257
Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/183 (55%), Positives = 132/183 (72%), Gaps = 3/183 (1%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVL V+K+ +F+GEA+ V +Q DFALQR+RQNMGRRYVEVFR K+Q+YY A+A
Sbjct: 74 LDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVEVFRCKKQDYYHAVA 133
Query: 77 NEVS--DVRGGSPHRSIPRAKSHD-EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
+EV+ + H S P ++S KD HT IL+LRGLPFS K I++FF DF L
Sbjct: 134 SEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLRGLPFSVKKSQILEFFGDFEL 193
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+D +HI DG+ TGEA+VEFA+AE++K AM KD+MT+GSRY+ELFPS+ +E A S
Sbjct: 194 GDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELFPSTPDEARRAES 253
Query: 194 RGR 196
R R
Sbjct: 254 RSR 256
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI FF + + + +N GR +GEA+V FA + + A+ +
Sbjct: 52 VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKSGRFSGEAYVVFAGSMQADFALQR 108
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F ++ A++
Sbjct: 109 DRQNMGRRYVEVFRCKKQDYYHAVA 133
>gi|239052941|ref|NP_001131830.2| uncharacterized protein LOC100193205 [Zea mays]
gi|223943183|gb|ACN25675.1| unknown [Zea mays]
gi|238908614|gb|ACF80415.2| unknown [Zea mays]
Length = 241
Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 132/187 (70%), Gaps = 9/187 (4%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L V+KN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR K+ EYY+AIA
Sbjct: 56 LDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVFRCKKLEYYRAIA 115
Query: 77 NEVSDVRGGSPHRSIPRAKSHD-------EGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
NEVS +GG R+ E K S +T +L+LRGLP+SA +DI+ FF
Sbjct: 116 NEVS--QGGYFESEYRRSSPPLSPPKKPAEDKGSMEYTEVLKLRGLPYSATTEDIIKFFL 173
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
++ L+E+++HI ++SDG+ TGEAFVEF E +K M KD+MT+G+RY+ELFPS+ EE+
Sbjct: 174 EYELTEENVHIAISSDGKATGEAFVEFPTTEVAKTVMCKDKMTIGTRYVELFPSTPEEVS 233
Query: 190 EALSRGR 196
A +RGR
Sbjct: 234 RARTRGR 240
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 103 SAVHTGI-----LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
+ TGI +RLRGLPF DI FF + + + +N +GR TGEAFV F
Sbjct: 23 AGASTGIQNFPGVRLRGLPFDCNDIDICKFFVGLDIVD---CLLVNKNGRFTGEAFVVFP 79
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
A ++ A+ ++R +G RY+E+F E A++
Sbjct: 80 TAMQTEFALHRNRQNMGRRYVEVFRCKKLEYYRAIA 115
>gi|168066869|ref|XP_001785353.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663050|gb|EDQ49838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 239
Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 136/191 (71%), Gaps = 15/191 (7%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+D+VDVL V N +F+GEA+ V G P+QVD+ALQ+NR N+GRRY+EVFR K+Q+YY A+A
Sbjct: 51 LDVVDVLLVRMNGRFSGEAYVVFGAPVQVDYALQKNRHNIGRRYIEVFRCKKQDYYHAVA 110
Query: 77 NEVSDVRGGSPHRSIP-------------RAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 123
EV+D R ++P +A S + KD TG+++LRGLPFSA K D
Sbjct: 111 AEVADTR--CIDSTLPLHVLNNNSSSASAKAPSRNNTKDHLNFTGVVKLRGLPFSATKSD 168
Query: 124 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
+MDFF++F L ++ +HI ++SDGR TGEAFV+F +A +K+AM KD+MT+GSRY+E+FPS
Sbjct: 169 VMDFFREFELHDEHVHIMLHSDGRTTGEAFVDFGSASKAKSAMNKDKMTMGSRYVEIFPS 228
Query: 184 SHEEMDEALSR 194
S EE A +R
Sbjct: 229 SREEATRAATR 239
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ D+ DFF + D + + MN GR +GEA+V F A+ K
Sbjct: 29 VVRLRGLPFNCSDSDVFDFFAGLDVV-DVLLVRMN--GRFSGEAYVVFGAPVQVDYALQK 85
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
+R +G RYIE+F ++ A++
Sbjct: 86 NRHNIGRRYIEVFRCKKQDYYHAVA 110
>gi|357143317|ref|XP_003572878.1| PREDICTED: G-rich sequence factor 1-like isoform 1 [Brachypodium
distachyon]
Length = 292
Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/186 (56%), Positives = 135/186 (72%), Gaps = 8/186 (4%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L VHKN +F+GEAF V +Q +FAL RNRQNMGRRYVEVFR K+QEYY A+A
Sbjct: 108 LDIVDCLLVHKNGRFSGEAFVVFPSTMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAVA 167
Query: 77 NEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
+EV+ +GG S +R PR K E K S +T +L+LRGLP+SA +DI+ FF +
Sbjct: 168 SEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMDYTEVLKLRGLPYSATIEDIIKFFVE 225
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ L+ED++HI SDG+ TGEAFVEF AE +K AM KD+MT+G+RY+ELFPS+ EE
Sbjct: 226 YELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASR 285
Query: 191 ALSRGR 196
A SRGR
Sbjct: 286 AKSRGR 291
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Query: 103 SAVHTGI-----LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
+ V++GI +RLRGLPF DI+ FF + + + ++ +GR +GEAFV F
Sbjct: 75 AGVNSGIQSFPGVRLRGLPFDCEDLDIIKFFVGLDIVD---CLLVHKNGRFSGEAFVVFP 131
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+ ++ A+ ++R +G RY+E+F +E A++
Sbjct: 132 STMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAVA 167
>gi|223944441|gb|ACN26304.1| unknown [Zea mays]
Length = 284
Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 132/187 (70%), Gaps = 9/187 (4%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L V+KN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR K+ EYY+AIA
Sbjct: 99 LDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVFRCKKLEYYRAIA 158
Query: 77 NEVSDVRGGSPHRSIPRAKSHD-------EGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
NEVS +GG R+ E K S +T +L+LRGLP+SA +DI+ FF
Sbjct: 159 NEVS--QGGYFESEYRRSSPPLSPPKKPAEDKGSMEYTEVLKLRGLPYSATTEDIIKFFL 216
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
++ L+E+++HI ++SDG+ TGEAFVEF E +K M KD+MT+G+RY+ELFPS+ EE+
Sbjct: 217 EYELTEENVHIAISSDGKATGEAFVEFPTTEVAKTVMCKDKMTIGTRYVELFPSTPEEVS 276
Query: 190 EALSRGR 196
A +RGR
Sbjct: 277 RARTRGR 283
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 103 SAVHTGI-----LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
+ TGI +RLRGLPF DI FF + + + +N +GR TGEAFV F
Sbjct: 66 AGASTGIQNFPGVRLRGLPFDCNDIDICKFFVGLDIVD---CLLVNKNGRFTGEAFVVFP 122
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
A ++ A+ ++R +G RY+E+F E A++
Sbjct: 123 TAMQTEFALHRNRQNMGRRYVEVFRCKKLEYYRAIA 158
>gi|356531341|ref|XP_003534236.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Glycine max]
Length = 264
Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 133/187 (71%), Gaps = 10/187 (5%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+ IVDVL V+K+ +F+GEAF V +QV+FALQR+RQNMGRRYVEVFR K+Q+YY A+A
Sbjct: 80 LTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVA 139
Query: 77 NEVS-------DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
E++ D G SP S R K ++ KD +T IL++RGLPF K I++FFK
Sbjct: 140 GEINYEGIYDNDYHGSSPPPS--RLKRFND-KDQMEYTEILKMRGLPFQVTKSQIVEFFK 196
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
DF L ED +HI DG+ TGEA+VEF +AE++K AM+KD+MT+GSRY+ELFPS+ +E
Sbjct: 197 DFKLIEDRVHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPSTPDEAR 256
Query: 190 EALSRGR 196
A SR R
Sbjct: 257 RAESRSR 263
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI+ FF + + + +N GR +GEAFV FA A + A+ +
Sbjct: 58 VVRLRGLPFNCTDIDILKFFAGLTIVD---VLLVNKSGRFSGEAFVVFAGAMQVEFALQR 114
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F ++ A++
Sbjct: 115 DRQNMGRRYVEVFRCKKQDYYNAVA 139
>gi|238006754|gb|ACR34412.1| unknown [Zea mays]
Length = 251
Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/184 (54%), Positives = 129/184 (70%), Gaps = 4/184 (2%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L V+KN +FTGEAF V +Q +FAL R+RQNMGRRYVEVFR K+ EYY AIA
Sbjct: 67 LDIVDCLLVNKNGRFTGEAFVVFPTAMQAEFALHRDRQNMGRRYVEVFRCKKHEYYCAIA 126
Query: 77 NEVSDVRGGSPH----RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
NEV+ P PR + E K S +T +L+LRGLP+SA +DI+ FF ++
Sbjct: 127 NEVNQGGYFEPEYRRSPPPPRPRKPSEDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYE 186
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
L+E+++HI SDG+ TGEAFVEF AE +K AM KD+MT+G+RY+ELFPS+ EE A
Sbjct: 187 LAEENVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRAK 246
Query: 193 SRGR 196
SRGR
Sbjct: 247 SRGR 250
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+RLRGLPF D+ FF + + + +N +GR TGEAFV F A ++ A+ +
Sbjct: 45 CVRLRGLPFDCNDIDVCKFFVGLDIVD---CLLVNKNGRFTGEAFVVFPTAMQAEFALHR 101
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F E A++
Sbjct: 102 DRQNMGRRYVEVFRCKKHEYYCAIA 126
>gi|356531343|ref|XP_003534237.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Glycine max]
Length = 257
Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 133/187 (71%), Gaps = 10/187 (5%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+ IVDVL V+K+ +F+GEAF V +QV+FALQR+RQNMGRRYVEVFR K+Q+YY A+A
Sbjct: 73 LTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVA 132
Query: 77 NEVS-------DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
E++ D G SP S R K ++ KD +T IL++RGLPF K I++FFK
Sbjct: 133 GEINYEGIYDNDYHGSSPPPS--RLKRFND-KDQMEYTEILKMRGLPFQVTKSQIVEFFK 189
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
DF L ED +HI DG+ TGEA+VEF +AE++K AM+KD+MT+GSRY+ELFPS+ +E
Sbjct: 190 DFKLIEDRVHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPSTPDEAR 249
Query: 190 EALSRGR 196
A SR R
Sbjct: 250 RAESRSR 256
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI+ FF + + + +N GR +GEAFV FA A + A+ +
Sbjct: 51 VVRLRGLPFNCTDIDILKFFAGLTIVD---VLLVNKSGRFSGEAFVVFAGAMQVEFALQR 107
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F ++ A++
Sbjct: 108 DRQNMGRRYVEVFRCKKQDYYNAVA 132
>gi|356559210|ref|XP_003547893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Glycine
max]
Length = 264
Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 134/187 (71%), Gaps = 10/187 (5%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+ IVDVL V+K+ +F+GEAF V +QV+FALQR+RQNMGRRYVEVFR K+Q+YY A+A
Sbjct: 80 LTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVA 139
Query: 77 NEV-------SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
E+ +D +G SP S R+K ++ KD T IL++RGLPF K I++FFK
Sbjct: 140 AEIKYEGIYDNDYQGSSPPPS--RSKRFND-KDQMECTEILKMRGLPFQVTKSQIVEFFK 196
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
DF L ED +HI DG+ TGEA+VEF +AE++K AM+KD+MT+GSRY+ELFPS+ +E
Sbjct: 197 DFKLIEDRVHIACRPDGKSTGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPSTPDEAR 256
Query: 190 EALSRGR 196
A SR R
Sbjct: 257 RAESRSR 263
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI+ FF + + + +N GR +GEAFV FA A + A+ +
Sbjct: 58 VVRLRGLPFNCTDIDILKFFAGLTIVD---VLLVNKSGRFSGEAFVVFAGAMQVEFALQR 114
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F ++ A++
Sbjct: 115 DRQNMGRRYVEVFRCKKQDYYNAVA 139
>gi|226500358|ref|NP_001148837.1| LOC100282455 [Zea mays]
gi|195622512|gb|ACG33086.1| RNA binding protein [Zea mays]
gi|238009718|gb|ACR35894.1| unknown [Zea mays]
Length = 303
Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/184 (54%), Positives = 129/184 (70%), Gaps = 4/184 (2%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L V+KN +FTGEAF V +Q +FAL R+RQNMGRRYVEVFR K+ EYY AIA
Sbjct: 119 LDIVDCLLVNKNGRFTGEAFVVFPTAMQAEFALHRDRQNMGRRYVEVFRCKKHEYYCAIA 178
Query: 77 NEVSDVRGGSPH----RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
NEV+ P PR + E K S +T +L+LRGLP+SA +DI+ FF ++
Sbjct: 179 NEVNQGGYFEPEYRRSPPPPRPRKPSEDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYE 238
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
L+E+++HI SDG+ TGEAFVEF AE +K AM KD+MT+G+RY+ELFPS+ EE A
Sbjct: 239 LAEENVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRAK 298
Query: 193 SRGR 196
SRGR
Sbjct: 299 SRGR 302
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+RLRGLPF D+ FF + + + +N +GR TGEAFV F A ++ A+ +
Sbjct: 97 CVRLRGLPFDCNDIDVCKFFVGLDIVD---CLLVNKNGRFTGEAFVVFPTAMQAEFALHR 153
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F E A++
Sbjct: 154 DRQNMGRRYVEVFRCKKHEYYCAIA 178
>gi|346703322|emb|CBX25419.1| hypothetical_protein [Oryza glaberrima]
Length = 291
Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/186 (55%), Positives = 131/186 (70%), Gaps = 8/186 (4%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR K+QEYY AIA
Sbjct: 107 LDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 166
Query: 77 NEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
EV+ +GG S +R PR K E K S +T +L+LRGLP+SA +DI+ FF +
Sbjct: 167 AEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVE 224
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ L+E+++HI DG+ TGEAFVEF AE +K AM KD+MT+G+RY+ELFPS+ EE
Sbjct: 225 YELTEENVHIAYRPDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASR 284
Query: 191 ALSRGR 196
SR R
Sbjct: 285 VKSRAR 290
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 100 GKDSAVHT--GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
G +SA+ G+ RLRGLPF DI FF + + + ++ +GR TGEAFV F
Sbjct: 75 GANSAIQNFPGV-RLRGLPFDCDDLDICKFFVGLDIVD---CLLVHKNGRFTGEAFVVFP 130
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+A ++ A+ ++R +G RY+E+F +E A++
Sbjct: 131 SAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 166
>gi|297612598|ref|NP_001066073.2| Os12g0131000 [Oryza sativa Japonica Group]
gi|255670013|dbj|BAF29092.2| Os12g0131000 [Oryza sativa Japonica Group]
Length = 292
Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/186 (55%), Positives = 131/186 (70%), Gaps = 8/186 (4%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR K+QEYY AIA
Sbjct: 108 LDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 167
Query: 77 NEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
EV+ +GG S +R PR K E K S +T +L+LRGLP+SA +DI+ FF +
Sbjct: 168 AEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVE 225
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ L+++++HI DG+ TGEA+VEF AE K AM KD+MT+G+RY+ELFPS+ EE
Sbjct: 226 YELTDENVHIVYRPDGKATGEAYVEFPTAEVVKTAMCKDKMTIGTRYVELFPSTPEEASR 285
Query: 191 ALSRGR 196
A SR R
Sbjct: 286 AKSRVR 291
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 100 GKDSAVHT--GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
G +SA+ G+ RLRGLPF DI FF + + + ++ +GR TGEAFV F
Sbjct: 76 GANSAIQNFPGV-RLRGLPFDCDDLDICKFFVGLDIVD---CLLVHKNGRFTGEAFVVFP 131
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+A ++ A+ ++R +G RY+E+F +E A++
Sbjct: 132 SAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 167
>gi|222616578|gb|EEE52710.1| hypothetical protein OsJ_35118 [Oryza sativa Japonica Group]
Length = 291
Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/186 (55%), Positives = 131/186 (70%), Gaps = 8/186 (4%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR K+QEYY AIA
Sbjct: 107 LDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 166
Query: 77 NEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
EV+ +GG S +R PR K E K S +T +L+LRGLP+SA +DI+ FF +
Sbjct: 167 AEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVE 224
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ L+++++HI DG+ TGEA+VEF AE K AM KD+MT+G+RY+ELFPS+ EE
Sbjct: 225 YELTDENVHIVYRPDGKATGEAYVEFPTAEVVKTAMCKDKMTIGTRYVELFPSTPEEASR 284
Query: 191 ALSRGR 196
A SR R
Sbjct: 285 AKSRVR 290
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 100 GKDSAVHT--GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
G +SA+ G+ RLRGLPF DI FF + + + ++ +GR TGEAFV F
Sbjct: 75 GANSAIQNFPGV-RLRGLPFDCDDLDICKFFVGLDIVD---CLLVHKNGRFTGEAFVVFP 130
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+A ++ A+ ++R +G RY+E+F +E A++
Sbjct: 131 SAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 166
>gi|346703709|emb|CBX24377.1| hypothetical_protein [Oryza glaberrima]
Length = 291
Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/186 (54%), Positives = 132/186 (70%), Gaps = 8/186 (4%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR K+QEYY AIA
Sbjct: 107 LDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 166
Query: 77 NEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
EV+ +GG S +R PR K E K S +T +L+LRGLP+SA ++I+ FF +
Sbjct: 167 AEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSATTEEIIKFFVE 224
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ L+++++HI DG+ TGEA+VEF AE +K AM KD+MT+G+RY+ELFPS+ EE
Sbjct: 225 YELTDENVHIVYRPDGKATGEAYVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASR 284
Query: 191 ALSRGR 196
A SR R
Sbjct: 285 AKSRVR 290
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 100 GKDSAVHT--GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
G +SA+ G+ RLRGLPF DI FF + + + ++ +GR TGEAFV F
Sbjct: 75 GANSAIQNFPGV-RLRGLPFDCDDLDICKFFVGLDIVD---CLLVHKNGRFTGEAFVVFP 130
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+A ++ A+ ++R +G RY+E+F +E A++
Sbjct: 131 SAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 166
>gi|255071701|ref|XP_002499525.1| predicted protein [Micromonas sp. RCC299]
gi|226514787|gb|ACO60783.1| predicted protein [Micromonas sp. RCC299]
Length = 251
Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 136/218 (62%), Gaps = 42/218 (19%)
Query: 15 QLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
Q +D VDVL V ++ + TGEA+ + P+Q+DFALQ+NR MGRRY+EVFRSK+Q+YY A
Sbjct: 40 QGLDPVDVLIVRRDGRATGEAYVLFANPMQMDFALQKNRGPMGRRYIEVFRSKKQDYYYA 99
Query: 75 IANEV-------SDVRGG------------------SPHRSIPRAKSHDEGKDSAV---- 105
+A+ V +D GG P +P G +AV
Sbjct: 100 VAHAVNEPTPHGTDFYGGDNGLASGAGHLAHVAGVGGPAPPVP------HGAPAAVRPPQ 153
Query: 106 -HTGILRLRGLPFSAGKDDIMDFFKDFVLS------EDSIHITMNSDGRPTGEAFVEFAN 158
HTG+L++RGLPFSA KDDI+ F+ D LS DSIHI + DGRP+G AFVEFA+
Sbjct: 154 EHTGVLKMRGLPFSATKDDIITFYDDPALSVTAPLTHDSIHIVTSLDGRPSGMAFVEFAS 213
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
AED+KAAM++DR T+GSRY+ELFPSS EE A + GR
Sbjct: 214 AEDAKAAMSRDRCTMGSRYVELFPSSREEATRAATSGR 251
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI-TMNSDGRPTGEAFVEFANAEDSKAAMA 167
++RLRGLPF+AG+ DI++FF+ D + + + DGR TGEA+V FAN A+
Sbjct: 20 VVRLRGLPFNAGEFDILEFFQGL----DPVDVLIVRRDGRATGEAYVLFANPMQMDFALQ 75
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALS 193
K+R +G RYIE+F S ++ A++
Sbjct: 76 KNRGPMGRRYIEVFRSKKQDYYYAVA 101
>gi|218185179|gb|EEC67606.1| hypothetical protein OsI_34981 [Oryza sativa Indica Group]
Length = 270
Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 95/180 (52%), Positives = 120/180 (66%), Gaps = 17/180 (9%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVE R K+QEYY AIA
Sbjct: 107 LDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEGCRCKKQEYYSAIA 166
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
A+ E K S +T +L+LRGLP+SA +DI+ FF ++ L+E+
Sbjct: 167 -----------------AEKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTEE 209
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
++HI DG+ TGEAFVEF AE +K AM KD+MT+G+RY+ELFPS+ EE A SR R
Sbjct: 210 NVHIAYRPDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRAR 269
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 100 GKDSAVHT--GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
G +SA+ G+ RLRGLPF D +D FK FV + + ++ +GR TGEAFV F
Sbjct: 75 GANSAIQNFPGV-RLRGLPFDC---DDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFP 130
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+A ++ A+ ++R +G RY+E +E A++
Sbjct: 131 SAMQAEFALHRNRQNMGRRYVEGCRCKKQEYYSAIA 166
>gi|296088657|emb|CBI37648.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 122/176 (69%), Gaps = 20/176 (11%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVL V+K+ +F+GEA+ V +Q DFALQR+RQNMGRRYVEVFR K+Q+YY A+A
Sbjct: 81 LDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVEVFRCKKQDYYHAVA 140
Query: 77 NE-VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 135
+E SD KD HT IL+LRGLPFS K I++FF DF L +
Sbjct: 141 SERFSD-------------------KDQMEHTEILKLRGLPFSVKKSQILEFFGDFELGD 181
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
D +HI DG+ TGEA+VEFA+AE++K AM KD+MT+GSRY+ELFPS+ +E A
Sbjct: 182 DKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELFPSTPDEARRA 237
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI FF + + + +N GR +GEA+V FA + + A+ +
Sbjct: 59 VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKSGRFSGEAYVVFAGSMQADFALQR 115
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR +G RY+E+F ++ A++ R
Sbjct: 116 DRQNMGRRYVEVFRCKKQDYYHAVASER 143
>gi|357517683|ref|XP_003629130.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
gi|355523152|gb|AET03606.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
Length = 290
Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 94/187 (50%), Positives = 126/187 (67%), Gaps = 11/187 (5%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+ IVDVL V+K+ +F+GEAF V +QV+FALQR+RQNMGRRYVEVFR K+Q+YY A+A
Sbjct: 107 LTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVA 166
Query: 77 NEVS-------DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
E++ D +G P P K+ +T IL++RGLPF K I+DFFK
Sbjct: 167 GEINYEGIYDNDYQGSPP----PSRSKRFSDKEQMDYTEILKMRGLPFLVTKSQIIDFFK 222
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
D+ L E +HI DG+ TGEA+VEF + +++K AM KD+MT+GSRY+ELFPS+ +E
Sbjct: 223 DYKLIEGRVHIACRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVELFPSTPDEAR 282
Query: 190 EALSRGR 196
A SR R
Sbjct: 283 RAESRSR 289
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI+ FF + + + +N GR +GEAFV FA A + A+ +
Sbjct: 85 VVRLRGLPFNCTDIDILKFFAGLTIVD---VLLVNKSGRFSGEAFVVFAGAMQVEFALQR 141
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F ++ A++
Sbjct: 142 DRQNMGRRYVEVFRCKKQDYYNAVA 166
>gi|10177116|dbj|BAB10406.1| unnamed protein product [Arabidopsis thaliana]
Length = 248
Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 117/172 (68%), Gaps = 5/172 (2%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
++IVDVL V KN KF+GEAF V P+QV+ ALQR+R NMGRRYVEVFR +Q+YY A+A
Sbjct: 65 LNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVA 124
Query: 77 NEVS----DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
E +VR P RAK E K+ +T +L++RGLP+S K I++FF +
Sbjct: 125 AEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYK 183
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+ + + + DG+ TGEAFVEF E+++ AMAKD+M++GSRY+ELFP++
Sbjct: 184 VIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELFPTT 235
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI +FF + D + ++ N G+ +GEAFV FA + A+ +
Sbjct: 43 VVRLRGLPFNCADIDIFEFFAGLNIV-DVLLVSKN--GKFSGEAFVVFAGPMQVEIALQR 99
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F S ++ A++
Sbjct: 100 DRHNMGRRYVEVFRCSKQDYYNAVA 124
>gi|145359708|ref|NP_201402.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332010757|gb|AED98140.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 255
Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 117/172 (68%), Gaps = 5/172 (2%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
++IVDVL V KN KF+GEAF V P+QV+ ALQR+R NMGRRYVEVFR +Q+YY A+A
Sbjct: 72 LNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVA 131
Query: 77 NEVS----DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
E +VR P RAK E K+ +T +L++RGLP+S K I++FF +
Sbjct: 132 AEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYK 190
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+ + + + DG+ TGEAFVEF E+++ AMAKD+M++GSRY+ELFP++
Sbjct: 191 VIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELFPTT 242
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+ DI +FF + D + ++ N G+ +GEAFV FA + A+ +
Sbjct: 50 VVRLRGLPFNCADIDIFEFFAGLNIV-DVLLVSKN--GKFSGEAFVVFAGPMQVEIALQR 106
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR +G RY+E+F S ++ A++
Sbjct: 107 DRHNMGRRYVEVFRCSKQDYYNAVA 131
>gi|297797787|ref|XP_002866778.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297312613|gb|EFH43037.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 255
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 116/172 (67%), Gaps = 5/172 (2%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVDVL V KN KF+GEAF V P+QV+ +LQR+R NMGRRYVEVFR +Q+YY A+A
Sbjct: 72 LDIVDVLLVSKNGKFSGEAFVVFAGPMQVEISLQRDRHNMGRRYVEVFRCSKQDYYNAVA 131
Query: 77 NEVS----DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
E + R P RAK E K+ +T +L++RGLP+S K I++FF +
Sbjct: 132 AEEGAYEYEARASPPPTVPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYK 190
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+ E + + DG+ TGEAFVEF E+++ AMAKD+M++GSRY+ELFP++
Sbjct: 191 VIEGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELFPTT 242
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA 167
++RLRGLPF+ DI FF D + + + S +G+ +GEAFV FA + ++
Sbjct: 50 VVRLRGLPFNCADIDIFKFFSGL----DIVDVLLVSKNGKFSGEAFVVFAGPMQVEISLQ 105
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALS 193
+DR +G RY+E+F S ++ A++
Sbjct: 106 RDRHNMGRRYVEVFRCSKQDYYNAVA 131
>gi|303278009|ref|XP_003058298.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460955|gb|EEH58249.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 230
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/187 (49%), Positives = 127/187 (67%), Gaps = 7/187 (3%)
Query: 15 QLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
Q ++ VDVL V ++ + TGEA+ VL + ++ ALQ+NR MGRRY+EVFRSK+Q+YY A
Sbjct: 46 QGLEPVDVLIVRRDGRATGEAYVVLANQMLMEVALQKNRGPMGRRYIEVFRSKKQDYYHA 105
Query: 75 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 134
++ V++ + + + + + A HTG+L+LRGLPFSA KDDI+ FF D L
Sbjct: 106 VSIAVNEPD--YGNGNGGQGGGYYDNGPLAEHTGVLKLRGLPFSATKDDIITFFDDKSLG 163
Query: 135 -----EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
DSIHI ++ DGRP+G AFVEF +AED+K AM KDR ++G+RY+ELFPSS EE
Sbjct: 164 VSPLVHDSIHIVLSVDGRPSGVAFVEFVSAEDAKTAMIKDRSSMGTRYVELFPSSREEAT 223
Query: 190 EALSRGR 196
A + GR
Sbjct: 224 RAATSGR 230
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPF+A + D+ +FF+ E + + DGR TGEA+V AN + A+ K
Sbjct: 26 VVRLRGLPFNASEYDVQEFFQGL---EPVDVLIVRRDGRATGEAYVVLANQMLMEVALQK 82
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
+R +G RYIE+F S ++ A+S
Sbjct: 83 NRGPMGRRYIEVFRSKKQDYYHAVS 107
>gi|77553600|gb|ABA96396.1| heterogeneous nuclear ribonucleoprotein, putative, expressed [Oryza
sativa Japonica Group]
Length = 235
Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 116/165 (70%), Gaps = 8/165 (4%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR K+QEYY AIA
Sbjct: 56 LDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 115
Query: 77 NEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
EV+ +GG S +R PR K E K S +T +L+LRGLP+SA +DI+ FF +
Sbjct: 116 AEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVE 173
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
+ L+++++HI DG+ TGEA+VEF AE K AM KD+MT+G+
Sbjct: 174 YELTDENVHIVYRPDGKATGEAYVEFPTAEVVKTAMCKDKMTIGT 218
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 100 GKDSAVHT--GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
G +SA+ G+ RLRGLPF DI FF + + + ++ +GR TGEAFV F
Sbjct: 24 GANSAIQNFPGV-RLRGLPFDCDDLDICKFFVGLDIVD---CLLVHKNGRFTGEAFVVFP 79
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+A ++ A+ ++R +G RY+E+F +E A++
Sbjct: 80 SAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 115
>gi|388513407|gb|AFK44765.1| unknown [Medicago truncatula]
Length = 158
Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/160 (52%), Positives = 110/160 (68%), Gaps = 9/160 (5%)
Query: 43 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS------DVRGGSPHRSIPRAKS 96
+QV+FALQR+RQNMGRRYVEVFR K+Q+YY A+A E++ D GSP S + S
Sbjct: 1 MQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAGEINYEGIYDDDYQGSPPPSRSKRFS 60
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
E D +T IL++RGLPF K I+DFFKD+ L E +HI DG+ TGEA+VEF
Sbjct: 61 DKEQMD---YTEILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKATGEAYVEF 117
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +++K AM KD+MT+GSRY+ELFPS+ +E A SR R
Sbjct: 118 VSPDEAKRAMFKDKMTIGSRYVELFPSTPDEARRAESRSR 157
>gi|226501122|ref|NP_001148833.1| RNA binding protein [Zea mays]
gi|195622468|gb|ACG33064.1| RNA binding protein [Zea mays]
Length = 268
Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/161 (52%), Positives = 108/161 (67%), Gaps = 9/161 (5%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L V+KN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR K+QEYY AIA
Sbjct: 110 LDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 169
Query: 77 NEVSDVRGG-------SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
NEVS +GG K E K S +T +L+LRGLP+SA +DI+ FF
Sbjct: 170 NEVS--QGGYFESEYRRSSPPPRPPKKPAEDKGSMEYTEVLKLRGLPYSATTEDIIKFFL 227
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 170
++ L+E+++HI + SDG+ TGEAFVEF AE +K A+ R
Sbjct: 228 EYELTEENVHIAIRSDGKATGEAFVEFPTAEVAKTRCARIR 268
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 71 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-----LRLRGLPFSAGKDDIM 125
Y+ A+ + GG P S+ G + TGI +RLRGLPF DI
Sbjct: 50 YFGAMGSNTGGASGGFYQ---PFNSSNLAG--AGASTGIQNFPGVRLRGLPFDCNDIDIC 104
Query: 126 DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185
FF + + + +N +GR TGEAFV F A ++ A+ ++R +G RY+E+F
Sbjct: 105 KFFVGLDIVD---CLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVFRCKK 161
Query: 186 EEMDEALS 193
+E A++
Sbjct: 162 QEYYSAIA 169
>gi|334188661|ref|NP_001190629.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332010758|gb|AED98141.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 158
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
Query: 43 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS----DVRGGSPHRSIPRAKSHD 98
+QV+ ALQR+R NMGRRYVEVFR +Q+YY A+A E +VR P RAK
Sbjct: 1 MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFS 60
Query: 99 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 158
E K+ +T +L++RGLP+S K I++FF + + + + + DG+ TGEAFVEF
Sbjct: 61 E-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFET 119
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSS 184
E+++ AMAKD+M++GSRY+ELFP++
Sbjct: 120 GEEARRAMAKDKMSIGSRYVELFPTT 145
>gi|299472433|emb|CBN77621.1| heterogeneous nuclear ribonucleoprotein, putative [Ectocarpus
siliculosus]
Length = 305
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 114/189 (60%), Gaps = 14/189 (7%)
Query: 20 VDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE 78
+DV+ V + + + GEA VL +++ AL R++Q+MGRRY+E+F+SKR +YY A+ +
Sbjct: 116 LDVVMVTRADGRGAGEAIVVLPNLMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQ 175
Query: 79 VSDVRGGSPHRSIPRAKSHDEGKD-------------SAVHTGILRLRGLPFSAGKDDIM 125
+ G R H VHTG++R+RGLPFSA K D++
Sbjct: 176 LQSQNMGGMQRQGGGGMGHGSMGGGGAGGLGPDGMAMPVVHTGVIRMRGLPFSATKQDVL 235
Query: 126 DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185
+FF+ ++ED+I + DGR TGEAFV F++ +S+AAM+++ +G+RY+ELF S+
Sbjct: 236 NFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESEAAMSRNGNHMGTRYVELFASTP 295
Query: 186 EEMDEALSR 194
EE+ ++R
Sbjct: 296 EEIVRHMNR 304
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+RLRGLPF A DD++ FF+ V D + +T +DGR GEA V N + + A+++D
Sbjct: 92 VRLRGLPFEATIDDVLRFFQGLV-PLDVVMVT-RADGRGAGEAIVVLPNLMEMQMALSRD 149
Query: 170 RMTLGSRYIELFPS 183
+ +G RYIE+F S
Sbjct: 150 KQHMGRRYIEIFQS 163
>gi|219111791|ref|XP_002177647.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410532|gb|EEC50461.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 245
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 118/226 (52%), Gaps = 48/226 (21%)
Query: 12 IHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY 71
I Q + ++DV+ + G+AF + P+ ALQR+RQ +GRR+VE+ + R EY
Sbjct: 21 ILFQGLVVIDVVISSQ-----GDAFVIFANPMDFQMALQRDRQTIGRRFVEIVAATRSEY 75
Query: 72 YKAIANE--------VSDVRGGSPH--RSIPRAKSHDEG-----------------KDSA 104
Y AIA + ++ + GGS S+P + EG +
Sbjct: 76 YDAIAKKSAGESASAMASLWGGSQGGMNSLPPQGGYGEGMQHHGLLGMGPRLTGMSRQGG 135
Query: 105 V----------------HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 148
+ HTG LR+RGLPFSA +DDI FF + +++S+ +T +DGR
Sbjct: 136 IHTPLQKRTGGGIQVGEHTGFLRVRGLPFSATRDDIFKFFLGYNPTQESVVLTYRNDGRA 195
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
TGEA++ FA A+DSK AM R +GSRY+ELF S+ +E AL+R
Sbjct: 196 TGEAYIGFATADDSKRAMELHRRVMGSRYVELFISNKDEHGRALAR 241
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 111 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 170
RLR LP+ A +DI+ F+ V+ I + ++S G+AFV FAN D + A+ +DR
Sbjct: 6 RLRNLPYDAALEDILILFQGLVV----IDVVISSQ----GDAFVIFANPMDFQMALQRDR 57
Query: 171 MTLGSRYIELFPSSHEEMDEALSR 194
T+G R++E+ ++ E +A+++
Sbjct: 58 QTIGRRFVEIVAATRSEYYDAIAK 81
>gi|361069401|gb|AEW09012.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172127|gb|AFG69420.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172129|gb|AFG69421.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172131|gb|AFG69422.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172133|gb|AFG69423.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172135|gb|AFG69424.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172137|gb|AFG69425.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172139|gb|AFG69426.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172141|gb|AFG69427.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172143|gb|AFG69428.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172145|gb|AFG69429.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172147|gb|AFG69430.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172149|gb|AFG69431.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172151|gb|AFG69432.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172153|gb|AFG69433.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172155|gb|AFG69434.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172157|gb|AFG69435.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172159|gb|AFG69436.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172161|gb|AFG69437.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
Length = 109
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 80/112 (71%), Gaps = 6/112 (5%)
Query: 36 FCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG---SPHRSIP 92
F V G P+QVDFALQR+RQNMGRRY+EVFR K+Q+YY AIA EV++ +G +P S
Sbjct: 1 FVVFGAPMQVDFALQRDRQNMGRRYIEVFRCKKQDYYNAIAAEVNEPKGADDPAPPSSFS 60
Query: 93 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 144
+ S KD HTGIL+LRGLPFS K DI+DFF D+ LSE ++HI +S
Sbjct: 61 KGSS---DKDHMEHTGILKLRGLPFSVSKRDIIDFFVDYDLSETNVHIVTHS 109
>gi|302852446|ref|XP_002957743.1| hypothetical protein VOLCADRAFT_84201 [Volvox carteri f.
nagariensis]
gi|300256919|gb|EFJ41175.1| hypothetical protein VOLCADRAFT_84201 [Volvox carteri f.
nagariensis]
Length = 241
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
++ VD++ V ++ +F+GEA VLG V+ AL ++RQ +G+R++E+F S +++YY+A+A
Sbjct: 57 LETVDIVMVKRDGRFSGEALVVLGSLQLVEAALSKHRQFIGQRFIEIFPSSKRDYYRAVA 116
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS-- 134
VS G + + T L+LRGLPF+A DDI+ FF D L
Sbjct: 117 AYVS----GDSYGQQGMGMGRGGMGAGSGGTTWLKLRGLPFAAVPDDIIAFFDDGTLGIP 172
Query: 135 -EDSIHITMNSD-GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
D + M +D GRPTG A V+F +++ A +KD+ +G+RY+E+FP++ ++D+ +
Sbjct: 173 RLDPSRVHMWTDGGRPTGMALVQFNTPQEASIARSKDKGLMGTRYVEIFPATRGDLDKFM 232
Query: 193 SR 194
+R
Sbjct: 233 AR 234
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM-NSDGRPTGEAFVEFANAEDSKAAMAK 168
+RLRGLPF + DI F L +++ I M DGR +GEA V + + +AA++K
Sbjct: 37 VRLRGLPFDVMEGDIKMF-----LELETVDIVMVKRDGRFSGEALVVLGSLQLVEAALSK 91
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
R +G R+IE+FPSS + A++
Sbjct: 92 HRQFIGQRFIEIFPSSKRDYYRAVA 116
>gi|168015582|ref|XP_001760329.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688343|gb|EDQ74720.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 550
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 99/183 (54%), Gaps = 14/183 (7%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA------- 74
V+ V+ + TG+A+ + AL+RNRQ++G RY+EVF+ + A
Sbjct: 52 VICVNFQGRSTGQAYVQFATAELANKALERNRQHIGSRYIEVFKGHPADMQGALRMVGRG 111
Query: 75 ---IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ + GG + IP + + + +TG++R+RG+P+S DI FFK
Sbjct: 112 SGTVTGSGAVATGGILNTGIPGMSGNPDMR----YTGVVRMRGMPYSCTSADITAFFKGM 167
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
+ D I + ++DGRPTGEAFVEFAN E + AM R +GSRY+ELF S+ EM A
Sbjct: 168 QVVADGIFLCTHADGRPTGEAFVEFANEEIAARAMQLHREPMGSRYVELFRSTKGEMMTA 227
Query: 192 LSR 194
+ +
Sbjct: 228 VQQ 230
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 34/203 (16%)
Query: 19 IVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+ D +F+ H + + TGEAF A+Q +R+ MG RYVE+FRS + E A+
Sbjct: 170 VADGIFLCTHADGRPTGEAFVEFANEEIAARAMQLHREPMGSRYVELFRSTKGEMMTAVQ 229
Query: 77 NEVSDVRGGSPHRS------IPR---------------AKSHDEG----------KDSAV 105
+ + G+ S IP A G D++
Sbjct: 230 QRMYGMFSGAGGFSQFGVGQIPGMMGAFGVQGLTGMNLAAVQAAGLGSMTGLQGLSDTSE 289
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
H +++RGLP++AG+ +IMDFF+ + + + IHI M + RPTGEAFVEF ++++++ A
Sbjct: 290 HV-CIKMRGLPYNAGQREIMDFFEGYNILPNGIHIVMGATDRPTGEAFVEFISSDEAQRA 348
Query: 166 MAKDRMTLGSRYIELFPSSHEEM 188
M + R +GSRYIELF ++ EM
Sbjct: 349 MERHRQNIGSRYIELFRATKSEM 371
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPFSA + DI DFFK + D + I +N GR TG+A+V+FA AE + A+ +
Sbjct: 22 VVRLRGLPFSASESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFATAELANKALER 81
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
+R +GSRYIE+F +M AL
Sbjct: 82 NRQHIGSRYIEVFKGHPADMQGAL 105
>gi|168037998|ref|XP_001771489.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677216|gb|EDQ63689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 14/183 (7%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA------- 74
V+ V+ + TG+A+ + AL+RNRQ++G RY+EVF+ + A
Sbjct: 52 VICVNFQGRSTGQAYVQFASAELANKALERNRQHIGSRYIEVFKGHPADMQGALRMVGRG 111
Query: 75 ---IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
++ + GG + IP + + + +TG++R+RG+P+S DI FFK
Sbjct: 112 SGVVSGSGAVASGGILNTGIPGMSGNPDMR----YTGVVRMRGMPYSCTSADITAFFKGM 167
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
+ D I + ++DGRPTGEAFVEF N E + AM R +GSRY+ELF S+ EM A
Sbjct: 168 QVVADGIFLCTHADGRPTGEAFVEFVNEETAARAMQLHREPMGSRYVELFRSTKGEMMTA 227
Query: 192 LSR 194
+ +
Sbjct: 228 VQQ 230
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 34/203 (16%)
Query: 19 IVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+ D +F+ H + + TGEAF A+Q +R+ MG RYVE+FRS + E A+
Sbjct: 170 VADGIFLCTHADGRPTGEAFVEFVNEETAARAMQLHREPMGSRYVELFRSTKGEMMTAVQ 229
Query: 77 NEVSDVRGGSPHRS------IPR---------------AKSHDEG----------KDSAV 105
+ + G+ S IP A G D++
Sbjct: 230 QRMYGMFSGAGGFSQFGVGQIPGMMGAFGVQGLTGMNLAAVQAAGLGSMTVPQGLSDTSE 289
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
H +++RGLP++AG+ +IMDFF+ + + IHI M + RPTGEAFVEF ++++++ A
Sbjct: 290 HV-CIKMRGLPYNAGQREIMDFFEGYSFLPNGIHIVMGATDRPTGEAFVEFMSSDEAQRA 348
Query: 166 MAKDRMTLGSRYIELFPSSHEEM 188
M + R +GSRYIELF ++ EM
Sbjct: 349 MERHRQNIGSRYIELFRATKSEM 371
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 57/84 (67%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPFSA + DI DFFK + D + I +N GR TG+A+V+FA+AE + A+ +
Sbjct: 22 VVRLRGLPFSATESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFASAELANKALER 81
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
+R +GSRYIE+F +M AL
Sbjct: 82 NRQHIGSRYIEVFKGHPADMQGAL 105
>gi|298710505|emb|CBJ25569.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 670
Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 101/168 (60%), Gaps = 21/168 (12%)
Query: 21 DVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
D+ VH + GEA+ L ++ AL+++R +GRRY+EVFRS ++ A+ ++VS
Sbjct: 75 DIHLVHNSR---GEAYVKLKNESDLETALKKDRNTIGRRYIEVFRSSIEDVEHAL-DDVS 130
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+K H +G + G++R+RGLP+SA + DI +FF + +D IH+
Sbjct: 131 -------------SKGHGDGG----YKGVVRMRGLPWSANEGDIRNFFDGIAIEKDGIHV 173
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
T+N DGRP+GEA+V F E +K A+ +D+ +G R+I++F ++ E+
Sbjct: 174 TLNRDGRPSGEAYVVFETEEAAKEALKRDKDKIGERWIDIFEATKGEV 221
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 10/160 (6%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84
++++ + +GEA+ V AL+R++ +G R++++F + + E Y
Sbjct: 175 LNRDGRPSGEAYVVFETEEAAKEALKRDKDKIGERWIDIFEATKGEVYSMTGG------- 227
Query: 85 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 144
+ S D DSA +TG++R+RGLPF A K I FF + E +I I
Sbjct: 228 -GGKKGDQGGVSFDT-TDSA-YTGVVRMRGLPFEATKSQIRAFFDGINVKESNIFIVTRP 284
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
DG+ +GEAFV F+ +++ A+ KD+ LG R+I+LF ++
Sbjct: 285 DGKASGEAFVLFSTEAEAEKALLKDKEKLGDRWIDLFATN 324
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 90/173 (52%), Gaps = 18/173 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
+ + K +GEAF + + + AL ++++ +G R++++F + + Y+ + V
Sbjct: 280 IVTRPDGKASGEAFVLFSTEAEAEKALLKDKEKLGDRWIDLFATNKGALYQRVGVGVKMA 339
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
K A G+LR+RGLPF++G ++I FF+ + + E + +
Sbjct: 340 -----------------AKPDAEFRGVLRMRGLPFASGVEEIRTFFRGYKVQEHGVFVVN 382
Query: 143 NSDGRPTGEAFVEFANAEDSKAAM-AKDRMTLGSRYIELFPSSHEEMDEALSR 194
D RPTGE++V F + ++++ A A D+ +G R+IELF S+ ++ A R
Sbjct: 383 GGDWRPTGESYVLFDSEDEAERAFKALDKQKIGDRWIELFRSTKGDLYTATVR 435
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 19/160 (11%)
Query: 32 TGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANE--VSDVRGGSPH 88
TGE++ + + + A + ++Q +G R++E+FRS + + Y A + RGG+ +
Sbjct: 389 TGESYVLFDSEDEAERAFKALDKQKIGDRWIELFRSTKGDLYTATVRSTVLGMERGGAMY 448
Query: 89 RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 148
P ++LRGLPF+ +++I FF+ L+ I + RP
Sbjct: 449 GREPMT--------------CVKLRGLPFNVTENNIFSFFEG--LTVIGSFICKDVMARP 492
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
TGE FVEFA +D + AM+++R ++ RY+E+F +S E++
Sbjct: 493 TGEGFVEFATVDDCQLAMSRNRESMMDRYVEVFATSKEDV 532
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 82 VRGGS---PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
VRGG+ R R K G +T + LRGLP++A +++DFF + + I
Sbjct: 17 VRGGNEVDTERGSKRQKGGGNGAGKGEYTHAVHLRGLPWNASTKELVDFFAPMDVEDGDI 76
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
H+ NS GEA+V+ N D + A+ KDR T+G RYIE+F SS E+++ AL
Sbjct: 77 HLVHNS----RGEAYVKLKNESDLETALKKDRNTIGRRYIEVFRSSIEDVEHAL 126
>gi|388507286|gb|AFK41709.1| unknown [Lotus japonicus]
Length = 163
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 70/96 (72%)
Query: 101 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
K+ +T IL++RGLPF+ K I+DFFKD+ L ED +HI DG+ TGEA+VEF + +
Sbjct: 67 KEQMEYTEILKMRGLPFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPD 126
Query: 161 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
++K AM+KD+M +GSRY+ELFPS+ +E A SR R
Sbjct: 127 EAKRAMSKDKMMIGSRYVELFPSTPDEARRAESRSR 162
>gi|302794117|ref|XP_002978823.1| hypothetical protein SELMODRAFT_443985 [Selaginella moellendorffii]
gi|300153632|gb|EFJ20270.1| hypothetical protein SELMODRAFT_443985 [Selaginella moellendorffii]
Length = 478
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 9/172 (5%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
V+ V+ + TG+A+ + +L+RNRQ++G RY+EVF+ + A+
Sbjct: 52 VICVNFQGRSTGQAYVQFATAELANKSLERNRQHIGSRYIEVFKGHPADMQGAMRMAGRG 111
Query: 82 VRG-----GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
G G IP + + + TG++R+RG+P+S DIM FFK ++ D
Sbjct: 112 SSGAYGAAGLQGTGIPGMAGNPDMR----FTGVVRMRGMPYSCTSADIMAFFKGMQVAPD 167
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
I + ++DGRPTGEAFVEF N E + AM R +GSRY+ELF S+ EM
Sbjct: 168 GIFLCTHADGRPTGEAFVEFINEETAARAMQLHREPMGSRYVELFKSTKGEM 219
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 23/189 (12%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE---------YYK 73
L H + + TGEAF A+Q +R+ MG RYVE+F+S + E ++
Sbjct: 171 LCTHADGRPTGEAFVEFINEETAARAMQLHREPMGSRYVELFKSTKGEMMTSVQQKLWFA 230
Query: 74 AIAN--------EVSDVRGGSPHRSIPR-----AKSHDEGKDSAVHTGI-LRLRGLPFSA 119
+ N ++ + GG + + +S G + + +++RGLP+++
Sbjct: 231 GVGNMSPVGSLGQIPGMLGGYGMQGVGALNLGAVQSPGPGAIGDISEDVCIKMRGLPYNS 290
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
G +I +FF+ + + + I++ + + RPTGEAFVEF ++++++ AM + R +GSRYIE
Sbjct: 291 GPREITEFFQGYRIVPNGIYVVIGATDRPTGEAFVEFISSKEAQRAMERHRNNIGSRYIE 350
Query: 180 LFPSSHEEM 188
LF ++ EM
Sbjct: 351 LFRATKSEM 359
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPFSA + DI +FF+ L D I I +N GR TG+A+V+FA AE + ++ +
Sbjct: 22 VVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAELANKSLER 81
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
+R +GSRYIE+F +M A+
Sbjct: 82 NRQHIGSRYIEVFKGHPADMQGAM 105
>gi|302805965|ref|XP_002984733.1| hypothetical protein SELMODRAFT_446014 [Selaginella moellendorffii]
gi|300147715|gb|EFJ14378.1| hypothetical protein SELMODRAFT_446014 [Selaginella moellendorffii]
Length = 483
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 9/172 (5%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
V+ V+ + TG+A+ + +L+RNRQ++G RY+EVF+ + A+
Sbjct: 52 VICVNFQGRSTGQAYVQFATAELANKSLERNRQHIGSRYIEVFKGHPADMQGAMRMAGRG 111
Query: 82 VRG-----GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
G G IP + + + TG++R+RG+P+S DIM FFK ++ D
Sbjct: 112 SSGAYGAAGLQGTGIPGMAGNPDMR----FTGVVRMRGMPYSCTSADIMAFFKGMQVAPD 167
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
I + ++DGRPTGEAFVEF N E + AM R +GSRY+ELF S+ EM
Sbjct: 168 GIFLCTHADGRPTGEAFVEFINEETAARAMQLHREPMGSRYVELFKSTKGEM 219
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 23/189 (12%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE---------YYK 73
L H + + TGEAF A+Q +R+ MG RYVE+F+S + E ++
Sbjct: 171 LCTHADGRPTGEAFVEFINEETAARAMQLHREPMGSRYVELFKSTKGEMMTSVQQKLWFA 230
Query: 74 AIAN--------EVSDVRGGSPHRSIPR-----AKSHDEGKDSAVHTGI-LRLRGLPFSA 119
+ N ++ + GG + + +S G + + +++RGLP+++
Sbjct: 231 GVGNMSPVGSLGQIPGMLGGYGMQGVGALNLGAVQSPGPGAIGDISEDVCIKMRGLPYNS 290
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
G +I +FF+ + + + I++ + + RPTGEAFVEF ++++++ AM + R +GSRYIE
Sbjct: 291 GPREITEFFQGYRIVPNGIYVVIGATDRPTGEAFVEFISSKEAQRAMERHRNNIGSRYIE 350
Query: 180 LFPSSHEEM 188
LF ++ EM
Sbjct: 351 LFRATKSEM 359
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPFSA + DI +FF+ L D I I +N GR TG+A+V+FA AE + ++ +
Sbjct: 22 VVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAELANKSLER 81
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
+R +GSRYIE+F +M A+
Sbjct: 82 NRQHIGSRYIEVFKGHPADMQGAM 105
>gi|125541750|gb|EAY88145.1| hypothetical protein OsI_09580 [Oryza sativa Indica Group]
Length = 226
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 76/131 (58%), Gaps = 24/131 (18%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+DIVD L HKN FT EAF V +Q +FAL RNRQNMGRRYVEVFR K+QEYY +IA
Sbjct: 45 LDIVDCLLDHKNGCFTDEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSSIA 104
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
E R+ P +L+LRGLP+ +DI+ FF ++ L+E+
Sbjct: 105 AE---------KRTPP---------------DVLKLRGLPYFTTAEDIIKFFVEYELTEE 140
Query: 137 SIHITMNSDGR 147
++H DG+
Sbjct: 141 NVHTAYRLDGK 151
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 100 GKDSAVH--TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDGRPTGEAFVEF 156
G +SA+ +G+ RL GLPF DI FF + D + ++ +G T EAFV F
Sbjct: 13 GANSAIQNFSGV-RLLGLPFDCSDLDICKFF----VGLDIVDCLLDHKNGCFTDEAFVVF 67
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+A ++ A+ ++R +G RY+E+F +E +++
Sbjct: 68 PSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSSIA 104
>gi|16876910|gb|AAH16736.1| HNRPF protein [Homo sapiens]
Length = 415
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF LG V AL+++R++MG RY+EVFRS R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFRSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFRSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|296220055|ref|XP_002756146.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Callithrix jacchus]
gi|403276785|ref|XP_003930066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Saimiri boliviensis boliviensis]
gi|403276787|ref|XP_003930067.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Saimiri boliviensis boliviensis]
Length = 415
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELGSEDDVKLALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|193643553|ref|XP_001946497.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Acyrthosiphon pisum]
Length = 518
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 20/173 (11%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L + + + +GEA+ + + AL+++R++MG RY+EVFRSKR E I S +
Sbjct: 92 LTMAREGRPSGEAYVEMESEEDLKAALKKDREHMGNRYIEVFRSKRSEMEWVIKKTGSTL 151
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
DS + +RLRGLPF + KDDI+ FF+ ++ D I I
Sbjct: 152 -------------------DSVLDDNCVRLRGLPFGSTKDDIVQFFQGLEMTPDGITIAT 192
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM-DEALSR 194
+ GR TGEAFV+F + E+++ A+ K + +G RYIE+F SS E+ ++AL R
Sbjct: 193 DFTGRSTGEAFVQFVDRENAEKALQKHKEKIGHRYIEIFRSSLAEIRNQALQR 245
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 10/110 (9%)
Query: 93 RAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSED-------SIHITMNS 144
R+ + +D + G ++++RGLP+SA DDI+ F +L E +H+TM
Sbjct: 39 RSNEQTDEEDCQSNEGFVVKMRGLPWSATADDIIKFLS--ILGEAKVKDGAAGVHLTMAR 96
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+GRP+GEA+VE + ED KAA+ KDR +G+RYIE+F S EM+ + +
Sbjct: 97 EGRPSGEAYVEMESEEDLKAALKKDREHMGNRYIEVFRSKRSEMEWVIKK 146
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ +RGLPF A +DDI FF+ L I I N++ RP+GEA VEF N ED+ AM+K
Sbjct: 346 VVHMRGLPFKANEDDIATFFE--PLEPVDIRILFNNNNRPSGEANVEFGNKEDAMRAMSK 403
Query: 169 DRMTLGSRYIELF 181
D+ + RYIELF
Sbjct: 404 DKTYMQHRYIELF 416
>gi|402880032|ref|XP_003903619.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Papio anubis]
gi|402880034|ref|XP_003903620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Papio anubis]
gi|402880036|ref|XP_003903621.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Papio anubis]
gi|402880038|ref|XP_003903622.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Papio anubis]
gi|402880040|ref|XP_003903623.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Papio anubis]
gi|402880042|ref|XP_003903624.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6
[Papio anubis]
gi|402880044|ref|XP_003903625.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Papio anubis]
gi|402880046|ref|XP_003903626.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8
[Papio anubis]
gi|402880048|ref|XP_003903627.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 9
[Papio anubis]
gi|402880050|ref|XP_003903628.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Papio anubis]
gi|402880052|ref|XP_003903629.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Papio anubis]
gi|402880054|ref|XP_003903630.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Papio anubis]
gi|402880056|ref|XP_003903631.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Papio anubis]
gi|402880058|ref|XP_003903632.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 14
[Papio anubis]
Length = 415
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIIQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|62510677|sp|Q60HC3.3|HNRPF_MACFA RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|52782291|dbj|BAD51992.1| heterogeneous nuclear ribonucleoprotein F [Macaca fascicularis]
Length = 415
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|332244100|ref|XP_003271210.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Nomascus leucogenys]
gi|332244102|ref|XP_003271211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Nomascus leucogenys]
gi|332244104|ref|XP_003271212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Nomascus leucogenys]
Length = 415
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|4826760|ref|NP_004957.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470397|ref|NP_001091678.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470400|ref|NP_001091677.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470402|ref|NP_001091675.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470404|ref|NP_001091674.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470406|ref|NP_001091676.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|350537293|ref|NP_001233466.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|386781898|ref|NP_001247944.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|297686319|ref|XP_002820702.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Pongo abelii]
gi|297686321|ref|XP_002820703.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Pongo abelii]
gi|297686325|ref|XP_002820705.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Pongo abelii]
gi|297686327|ref|XP_002820706.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Pongo abelii]
gi|297686329|ref|XP_002820707.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6
[Pongo abelii]
gi|297686331|ref|XP_002820708.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Pongo abelii]
gi|297686333|ref|XP_002820709.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8
[Pongo abelii]
gi|297686337|ref|XP_002820711.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Pongo abelii]
gi|297686339|ref|XP_002820712.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Pongo abelii]
gi|297686341|ref|XP_002820713.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Pongo abelii]
gi|297686343|ref|XP_002820714.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Pongo abelii]
gi|297686345|ref|XP_002820715.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 14
[Pongo abelii]
gi|395741477|ref|XP_003777588.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Pongo abelii]
gi|395741481|ref|XP_003777589.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Pongo abelii]
gi|397491662|ref|XP_003816768.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1 [Pan
paniscus]
gi|397491664|ref|XP_003816769.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2 [Pan
paniscus]
gi|397491666|ref|XP_003816770.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3 [Pan
paniscus]
gi|397491668|ref|XP_003816771.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4 [Pan
paniscus]
gi|397491670|ref|XP_003816772.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5 [Pan
paniscus]
gi|397491672|ref|XP_003816773.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6 [Pan
paniscus]
gi|397491674|ref|XP_003816774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7 [Pan
paniscus]
gi|397491676|ref|XP_003816775.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8 [Pan
paniscus]
gi|397491678|ref|XP_003816776.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 9 [Pan
paniscus]
gi|397491680|ref|XP_003816777.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Pan paniscus]
gi|397491682|ref|XP_003816778.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Pan paniscus]
gi|397491684|ref|XP_003816779.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Pan paniscus]
gi|397491686|ref|XP_003816780.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Pan paniscus]
gi|426364503|ref|XP_004049345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Gorilla gorilla gorilla]
gi|426364505|ref|XP_004049346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Gorilla gorilla gorilla]
gi|426364507|ref|XP_004049347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Gorilla gorilla gorilla]
gi|426364509|ref|XP_004049348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Gorilla gorilla gorilla]
gi|1710628|sp|P52597.3|HNRPF_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; AltName: Full=Nucleolin-like protein
mcs94-1; Contains: RecName: Full=Heterogeneous nuclear
ribonucleoprotein F, N-terminally processed
gi|452048|gb|AAC37584.1| HnRNP F protein [Homo sapiens]
gi|12655155|gb|AAH01432.1| Heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|13279032|gb|AAH04254.1| Heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|15990432|gb|AAH15580.1| HNRPF protein [Homo sapiens]
gi|67967777|dbj|BAE00371.1| unnamed protein product [Macaca fascicularis]
gi|76780063|gb|AAI06009.1| HNRPF protein [Homo sapiens]
gi|119607001|gb|EAW86595.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607002|gb|EAW86596.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607003|gb|EAW86597.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607004|gb|EAW86598.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607005|gb|EAW86599.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|123997411|gb|ABM86307.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|157929032|gb|ABW03801.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|168277548|dbj|BAG10752.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|193785530|dbj|BAG50896.1| unnamed protein product [Homo sapiens]
gi|343959614|dbj|BAK63664.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|355562388|gb|EHH18982.1| Heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|355782737|gb|EHH64658.1| Heterogeneous nuclear ribonucleoprotein F [Macaca fascicularis]
gi|380785399|gb|AFE64575.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|384946770|gb|AFI36990.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|410262002|gb|JAA18967.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262004|gb|JAA18968.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262006|gb|JAA18969.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262008|gb|JAA18970.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299574|gb|JAA28387.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299576|gb|JAA28388.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299578|gb|JAA28389.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299580|gb|JAA28390.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299582|gb|JAA28391.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340859|gb|JAA39376.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340861|gb|JAA39377.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340863|gb|JAA39378.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340865|gb|JAA39379.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340867|gb|JAA39380.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340869|gb|JAA39381.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
Length = 415
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|196010820|ref|XP_002115274.1| hypothetical protein TRIADDRAFT_29141 [Trichoplax adhaerens]
gi|190582045|gb|EDV22119.1| hypothetical protein TRIADDRAFT_29141 [Trichoplax adhaerens]
Length = 339
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 90/154 (58%), Gaps = 20/154 (12%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
+ + +GEA+ G + AL+RNR +MG+RYVEVF+SKR E + +
Sbjct: 46 DGRASGEAYIEFGSLEDFNRALERNRCHMGKRYVEVFKSKRSEMDYVVKR--------TK 97
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
RS G+DS ++RLRGLP+ K++I FF + + + I ++ DGR
Sbjct: 98 QRS---------GRDSE---NVVRLRGLPYECSKEEIAQFFTGYEIIPNGITFGVDRDGR 145
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
TGEA+VEFAN + S+ A++KD+ T+G RYIE+F
Sbjct: 146 STGEAYVEFANTDVSERALSKDKETIGHRYIEIF 179
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 96/203 (47%), Gaps = 42/203 (20%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84
V ++ + TGEA+ + AL ++++ +G RY+E+FR+K+ + + A ++ + G
Sbjct: 140 VDRDGRSTGEAYVEFANTDVSERALSKDKETIGHRYIEIFRAKKSDIHNMSAPKIRPLIG 199
Query: 85 --------------------GSPHRSIPRAKSHDEGK------------------DSAVH 106
G P + + ++ G + VH
Sbjct: 200 SAASSRPRPYDRKRGDRFTRGHPEDRYNQGRGYNRGYLDNRPSDHPVEPDRPPDFEPNVH 259
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+ +R+RGLPF +++I+DFF L +IHI G+ TGEA VEF N ED+ AM
Sbjct: 260 S--IRMRGLPFKVTENEIVDFFDQIPLQ--NIHIEYGDGGKATGEAVVEFYNYEDALEAM 315
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
KDR + RYIELF ++ E +
Sbjct: 316 NKDRRRIKHRYIELFLNTTPESE 338
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+SA +D+ FF + E IH T SDGR +GEA++EF + ED A+
Sbjct: 8 VVRIRGLPWSATVEDVQKFFTGCRVKEGRQGIHFTYASDGRASGEAYIEFGSLEDFNRAL 67
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
++R +G RY+E+F S EMD + R
Sbjct: 68 ERNRCHMGKRYVEVFKSKRSEMDYVVKR 95
>gi|26345420|dbj|BAC36361.1| unnamed protein product [Mus musculus]
Length = 421
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|58476100|gb|AAH89313.1| Hnrpf protein [Mus musculus]
Length = 395
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 14 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 70
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P + DSA + G +RLRGLPF K++I+ FF
Sbjct: 71 TEMDWVLKH------------SGPNSA------DSA-NDGFVRLRGLPFGCTKEEIVQFF 111
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 112 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 171
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 270 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 327
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 328 DRANMQHRYIELFLNS 343
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 122 DDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
+D+ +F D + + +H +GR +GEAFVE + +D K A+ KDR ++G RYIE
Sbjct: 5 EDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIE 64
Query: 180 LFPSSHEEMDEAL 192
+F S EMD L
Sbjct: 65 VFKSHRTEMDWVL 77
>gi|19527048|ref|NP_598595.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|25742579|ref|NP_071792.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546815|ref|NP_001032362.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546817|ref|NP_001032363.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546819|ref|NP_001032364.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|261878597|ref|NP_001159899.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878599|ref|NP_001159900.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878601|ref|NP_001159901.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878603|ref|NP_001159902.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878605|ref|NP_001159903.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878607|ref|NP_001159904.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|81911895|sp|Q794E4.3|HNRPF_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|81918016|sp|Q9Z2X1.3|HNRPF_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|4153896|dbj|BAA37095.1| ribonucleoprotein F [Rattus norvegicus]
gi|17390408|gb|AAH18185.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|19343662|gb|AAH25481.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|22137695|gb|AAH29163.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|23274049|gb|AAH33483.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|66911957|gb|AAH97275.1| Heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|73909045|gb|AAI03635.1| Heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|148667168|gb|EDK99584.1| mCG133010, isoform CRA_a [Mus musculus]
gi|149049635|gb|EDM02089.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049636|gb|EDM02090.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049637|gb|EDM02091.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049638|gb|EDM02092.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049639|gb|EDM02093.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049640|gb|EDM02094.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
Length = 415
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|62460420|ref|NP_001014860.1| heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|426255584|ref|XP_004021428.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Ovis aries]
gi|426255586|ref|XP_004021429.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Ovis aries]
gi|426255588|ref|XP_004021430.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Ovis aries]
gi|75070041|sp|Q5E9J1.3|HNRPF_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|59858223|gb|AAX08946.1| heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|74355042|gb|AAI02956.1| Heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|296472206|tpg|DAA14321.1| TPA: heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|440903473|gb|ELR54126.1| Heterogeneous nuclear ribonucleoprotein F, partial [Bos grunniens
mutus]
Length = 414
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIIQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|390361159|ref|XP_798587.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 3
[Strongylocentrotus purpuratus]
Length = 500
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 93/168 (55%), Gaps = 21/168 (12%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
V FVH + +GE F V V L++N ++G RY+EVFRSK E E
Sbjct: 38 VKFVHLPGGRPSGECFVVFESHDDVLKGLKKNNNHIGHRYIEVFRSKNSEM------EWV 91
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
RGG +AK ++G +RLRGLPF DDI DFFK++ ++ED I +
Sbjct: 92 TSRGGD------KAKEENDG--------CVRLRGLPFDCRTDDINDFFKEYQIAEDGITL 137
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ DGR TGEA+V+F + + ++ A++K + +G RYIE+F + E+
Sbjct: 138 PTDYDGRSTGEAYVQFVSKDIAEGALSKHKANMGHRYIEVFQCNASEI 185
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I+R RGLP+SA +DI+ FF + V+ D + GRP+GE FV F + +D +
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKGL 66
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRG 195
K+ +G RYIE+F S + EM+ SRG
Sbjct: 67 KKNNNHIGHRYIEVFRSKNSEMEWVTSRG 95
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+ A ++DI FF + + +N GR TGEA +F E ++AAM K
Sbjct: 317 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVN--GRSTGEADADFQTVEAAQAAMTKH 374
Query: 170 RMTLGSRYIELFPSSHE 186
+ +G RYIELF ++ E
Sbjct: 375 KSEMGPRYIELFLNTDE 391
>gi|390361161|ref|XP_003729859.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 1
[Strongylocentrotus purpuratus]
Length = 515
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 93/168 (55%), Gaps = 21/168 (12%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
V FVH + +GE F V V L++N ++G RY+EVFRSK E E
Sbjct: 38 VKFVHLPGGRPSGECFVVFESHDDVLKGLKKNNNHIGHRYIEVFRSKNSEM------EWV 91
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
RGG +AK ++G +RLRGLPF DDI DFFK++ ++ED I +
Sbjct: 92 TSRGGD------KAKEENDG--------CVRLRGLPFDCRTDDINDFFKEYQIAEDGITL 137
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ DGR TGEA+V+F + + ++ A++K + +G RYIE+F + E+
Sbjct: 138 PTDYDGRSTGEAYVQFVSKDIAEGALSKHKANMGHRYIEVFQCNASEI 185
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I+R RGLP+SA +DI+ FF + V+ D + GRP+GE FV F + +D +
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKGL 66
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRG 195
K+ +G RYIE+F S + EM+ SRG
Sbjct: 67 KKNNNHIGHRYIEVFRSKNSEMEWVTSRG 95
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+ A ++DI FF + + +N GR TGEA +F E ++AAM K
Sbjct: 332 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVN--GRSTGEADADFQTVEAAQAAMTKH 389
Query: 170 RMTLGSRYIELFPSSHE 186
+ +G RYIELF ++ E
Sbjct: 390 KSEMGPRYIELFLNTDE 406
>gi|390361163|ref|XP_003729860.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 2
[Strongylocentrotus purpuratus]
Length = 521
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 93/168 (55%), Gaps = 21/168 (12%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
V FVH + +GE F V V L++N ++G RY+EVFRSK E E
Sbjct: 38 VKFVHLPGGRPSGECFVVFESHDDVLKGLKKNNNHIGHRYIEVFRSKNSEM------EWV 91
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
RGG +AK ++G +RLRGLPF DDI DFFK++ ++ED I +
Sbjct: 92 TSRGGD------KAKEENDG--------CVRLRGLPFDCRTDDINDFFKEYQIAEDGITL 137
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ DGR TGEA+V+F + + ++ A++K + +G RYIE+F + E+
Sbjct: 138 PTDYDGRSTGEAYVQFVSKDIAEGALSKHKANMGHRYIEVFQCNASEI 185
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I+R RGLP+SA +DI+ FF + V+ D + GRP+GE FV F + +D +
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKGL 66
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRG 195
K+ +G RYIE+F S + EM+ SRG
Sbjct: 67 KKNNNHIGHRYIEVFRSKNSEMEWVTSRG 95
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+ A ++DI FF + + +N GR TGEA +F E ++AAM K
Sbjct: 332 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVN--GRSTGEADADFQTVEAAQAAMTKH 389
Query: 170 RMTLGSRYIELFPSSHE 186
+ +G RYIELF ++ E
Sbjct: 390 KSEMGPRYIELFLNTDE 406
>gi|388499278|gb|AFK37705.1| unknown [Medicago truncatula]
Length = 94
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 65/91 (71%)
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
+T IL++RGLPF K I+DFFKD+ L E +HI DG+ TGEA+VEF + +++K A
Sbjct: 3 YTEILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKVTGEAYVEFVSPDEAKRA 62
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
M KD+MT+GSRY+ELFP + +E A SR R
Sbjct: 63 MFKDKMTIGSRYVELFPFTPDEARRAESRSR 93
>gi|395851365|ref|XP_003798231.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 415
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH I F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R
Sbjct: 33 CTIHDGPGGI---HFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHR 89
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 90 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVLFF 130
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 131 TGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 190
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F + + + IH +GR +GEAFVE + +D K A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSNCTIHDGPGGIHFIYTREGRQSGEAFVELGSEDDVKMAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVL 96
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|198421641|ref|XP_002120551.1| PREDICTED: similar to RNA-binding protein 35B (RNA-binding motif
protein 35B) [Ciona intestinalis]
Length = 772
Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 97/175 (55%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D AL R++ +M RY+EV+R+ E+ K V
Sbjct: 285 LVLNPQGRRNGEALVRFENEQQRDLALLRHKHHMASRYIEVYRASGDEFLK--------V 336
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIH 139
GS +I H K+ I+R+RGLPF+AG DI++FF D + E+ +
Sbjct: 337 AAGSSCEAI-----HFLSKEGE---AIVRMRGLPFTAGPRDIVEFFGDEIPVAHGEEGVL 388
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ +DGRPTG+AFV F + + + AA+ K ++TLG RY+E+F S+ E+ + LSR
Sbjct: 389 LVKFADGRPTGDAFVLFTSEKFAVAALNKHKLTLGKRYVEIFKSTAAEVQQVLSR 443
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 15/175 (8%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD---VRGGSPH 88
TG+AF + AL +++ +G+RYVE+F+S E + ++ ++ SPH
Sbjct: 398 TGDAFVLFTSEKFAVAALNKHKLTLGKRYVEIFKSTAAEVQQVLSRHMTSPIIPTMPSPH 457
Query: 89 RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDG 146
P + G A+ I RLRG+P+SA +DI F + S IH+ +N G
Sbjct: 458 ILPPPQQPVPAG---AIRNCI-RLRGMPYSATVEDITSFLGELANSILPHGIHMVLNQQG 513
Query: 147 RPTGEAFVEFANAED-SKAAM-----AKDRMTLGSRYIELFPSSHEEMDEALSRG 195
RP+G+AF++ ++ E S+AA+ + +G RY+E+F S +EM+ L G
Sbjct: 514 RPSGDAFIQLSSVEKCSQAALDVSKGGCHKRHMGERYVEVFQCSGDEMNMVLMGG 568
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAK 168
+R++G+P++AG DIM FFK + L+ +SI + N RPTGEA V F + E+S +A +
Sbjct: 698 VRMQGMPYNAGVADIMAFFKGYNLNSESIKLIYNDKLRPTGEALVTFPSLEESHRAVVEN 757
Query: 169 DRMTLGSRYIELF 181
+R +G+RYIEL
Sbjct: 758 NRKLMGNRYIELL 770
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ A D+ FFK + + +N GR GEA V F N + A+ +
Sbjct: 254 VVRARGLPWQASDHDVARFFKGLNIPRGGAALVLNPQGRRNGEALVRFENEQQRDLALLR 313
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ + SRYIE++ +S +E
Sbjct: 314 HKHHMASRYIEVYRASGDE 332
>gi|291412565|ref|XP_002722547.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Oryctolagus cuniculus]
Length = 415
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELESEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|73997922|ref|XP_848697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Canis lupus familiaris]
gi|73997926|ref|XP_856894.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Canis lupus familiaris]
gi|73997930|ref|XP_856973.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Canis lupus familiaris]
gi|301763831|ref|XP_002917330.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 1
[Ailuropoda melanoleuca]
gi|301763833|ref|XP_002917331.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 2
[Ailuropoda melanoleuca]
gi|301763835|ref|XP_002917332.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 3
[Ailuropoda melanoleuca]
gi|301763837|ref|XP_002917333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 4
[Ailuropoda melanoleuca]
gi|410975641|ref|XP_003994239.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Felis catus]
gi|410975643|ref|XP_003994240.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Felis catus]
gi|410975645|ref|XP_003994241.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Felis catus]
gi|281338546|gb|EFB14130.1| hypothetical protein PANDA_005550 [Ailuropoda melanoleuca]
Length = 414
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELESEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|149690626|ref|XP_001490069.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 1
[Equus caballus]
gi|338717722|ref|XP_003363688.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Equus
caballus]
Length = 414
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFIELESEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAF+E + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFIELESEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|344274318|ref|XP_003408964.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Loxodonta africana]
Length = 414
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 99/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C IH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 33 CKIHD---GVAGVHFIYTREGRQSGEAFVELESEEDVKMALKKDRESMGHRYIEVFKSHR 89
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 90 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIVQFF 130
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 131 SGLEIMPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 190
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F + + + +H +GR +GEAFVE + ED K A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSECKIHDGVAGVHFIYTREGRQSGEAFVELESEEDVKMAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVL 96
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 289 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 346
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 347 DRANMQHRYIELFLNS 362
>gi|148667170|gb|EDK99586.1| mCG133010, isoform CRA_c [Mus musculus]
Length = 187
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 97/176 (55%), Gaps = 23/176 (13%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
>gi|351699543|gb|EHB02462.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 372
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 99/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTI + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 33 CTIRD---GVAGVHFIYTREGRQSGEAFVELESEDDVKMALKKDRESMGHRYIEVFKSHR 89
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 90 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIVQFF 130
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 131 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 190
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 21/182 (11%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
L V K TGEAF + AL ++++ +G RY+EVF+S ++E Y +
Sbjct: 141 TLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKF 200
Query: 80 SDVRGGSPH---------------RSIPRAKSHDEGKDSAVHTG--ILRLRGLPFSAGKD 122
+ V+ P+ + R +S+ +G+ + T + +RGLP+ A ++
Sbjct: 201 TSVQQPGPYDHPDTARRYIGIVKQAGLERMRSYGDGEFTVQSTTGHCVHMRGLPYKATEN 260
Query: 123 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182
DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+KDR + RYIELF
Sbjct: 261 DIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 318
Query: 183 SS 184
+S
Sbjct: 319 NS 320
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVL 96
>gi|346465413|gb|AEO32551.1| hypothetical protein [Amblyomma maculatum]
Length = 434
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 19/173 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
+ + + + +GEA+ L V+ LQR+ +++G RY+EVF+SKR E +
Sbjct: 69 MTLSREGRPSGEAYIELESEQDVEIGLQRHNEHIGHRYIEVFKSKRSEMDWVVK------ 122
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
R+ +H + +++ G +RLRGLPF K++I FF + + I +
Sbjct: 123 ----------RSGAHQQ---DSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPT 169
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+ GR TGEAFV+FA + ++ AM K + +G RYIE+F SS +E+ A+ G
Sbjct: 170 DYQGRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVGMG 222
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 36/187 (19%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV--------- 82
TGEAF + A+ ++++ +G RY+E+F+S QE A+ V +
Sbjct: 176 TGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVGMGVPKMMRPMGTGRP 235
Query: 83 -------------------RGGSPHRSIPRAKSHDE--GKDSAVH---TG-ILRLRGLPF 117
RGG R + + G H TG + +RGLPF
Sbjct: 236 GPYDRVERFGGGPSRYGMGRGGRNFRGFVEEDGYGDFGGSVGGSHFSATGHFVHMRGLPF 295
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
A + DI +FF+ ++ ++H GRP+GE VEFA E++ AM+KD+ + RY
Sbjct: 296 RATERDIFEFFQP--MNPVNVHFIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRY 353
Query: 178 IELFPSS 184
IELF +S
Sbjct: 354 IELFLNS 360
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD----FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
+LR+RGLP+S K++I++FF + +H+T++ +GRP+GEA++E + +D +
Sbjct: 34 VLRIRGLPWSTTKEEILNFFTSKECHIKGGINGVHMTLSREGRPSGEAYIELESEQDVEI 93
Query: 165 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + +G RYIE+F S EMD + R
Sbjct: 94 GLQRHNEHIGHRYIEVFKSKRSEMDWVVKR 123
>gi|452823782|gb|EME30790.1| RNA-binding protein [Galdieria sulphuraria]
Length = 739
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 1 MELPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRY 60
+E QV + C +H L ++ K GEAF L V+ AL+ +RQ +G RY
Sbjct: 275 LEGAQV-IPCAVHFVL---------NQQGKPRGEAFVQLLSVDDVNRALELHRQVLGHRY 324
Query: 61 VEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG 120
+EVF+S QE ++ + +P S+ D + I+R+RGLPFSA
Sbjct: 325 IEVFKSTPQEMSTVLSRQNGRSTSLAPFSRT--TYSNVSSIDDSKPFFIIRMRGLPFSAS 382
Query: 121 KDDIMDFFKDFVL----SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
D + FF + S IHI N DG P GEAFVEFA+ + A+ + + +G R
Sbjct: 383 ADQVARFFDGIEIAGCRSNGGIHIVQNQDGHPIGEAFVEFASEDALNKALQRHKQMMGKR 442
Query: 177 YIELFPSSHEEMDEALSR 194
YIELF SS EM + R
Sbjct: 443 YIELFRSSLMEMLNTIER 460
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 5/165 (3%)
Query: 33 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP 92
GEAF ++ ALQR++Q MG+RY+E+FRS E I V + ++
Sbjct: 416 GEAFVEFASEDALNKALQRHKQMMGKRYIELFRSSLMEMLNTIERHGGPVARAAIEATVC 475
Query: 93 R----AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 148
S A LR+RGLPF DI FF ++ + I+ N RP
Sbjct: 476 ENSVGTSSRSVLNSDASTCSFLRIRGLPFDTTVSDITTFFAEYRIVPGGIYFVNNGLDRP 535
Query: 149 TGEAFVEFANAEDSKAAM-AKDRMTLGSRYIELFPSSHEEMDEAL 192
GEAFV+F++ ++ A+ KD++ +GSRY+ELF +S E+ L
Sbjct: 536 KGEAFVQFSSVDERNDALKKKDKLYMGSRYVELFEASEAEVSALL 580
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
+ V TG I+RLRGLP+SA K+D+++F + + ++H +N G+P GEAFV+ + +D
Sbjct: 249 AGVPTGSIIRLRGLPWSATKEDVLNFLEGAQVIPCAVHFVLNQQGKPRGEAFVQLLSVDD 308
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
A+ R LG RYIE+F S+ +EM LSR
Sbjct: 309 VNRALELHRQVLGHRYIEVFKSTPQEMSTVLSR 341
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 35/195 (17%)
Query: 33 GEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAI-ANEVSDVRGGSPHR- 89
GEAF + + AL++ ++ MG RYVE+F + E + +N S + +
Sbjct: 537 GEAFVQFSSVDERNDALKKKDKLYMGSRYVELFEASEAEVSALLGSNLCSTITSAASSIA 596
Query: 90 ---------SIPRAKSHD--------EGKDSA-----------VHTGILRLRGLPFSAGK 121
S P KS++ G D++ + +R+RGLPF A
Sbjct: 597 NSSSAKSTFSNPNTKSNELLTWESVGRGWDASSWKSNIPKSHIIPNRTVRMRGLPFRATI 656
Query: 122 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 180
DI FF DF ++E + + + GRP+GEA+V F E+++ A+++ +G RYIEL
Sbjct: 657 SDIQFFFSDFHITESDVVLGFDKMGRPSGEAWVTFGTEEEARNAVSQLQHAHIGKRYIEL 716
Query: 181 FPSSHEEMDEALSRG 195
F + D+++S G
Sbjct: 717 FLCTQ---DKSVSLG 728
>gi|417400513|gb|JAA47194.1| Putative splicing factor hnrnp-f [Desmodus rotundus]
Length = 414
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 99/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C IH + + F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CIIHD---GVAGIHFIYTREGRQSGEAFVELESEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F ++ + IH +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGVAGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|148707962|gb|EDL39909.1| mCG129396 [Mus musculus]
Length = 415
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + +GEAF L V AL+++R++MG Y+EVF+S R
Sbjct: 34 CTIHD---GVAGVHFIYTREGSQSGEAFVELESEDDVKLALKKDRESMGHPYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+ A ++DI +FF F + +HI + DGR TGEA VEFA E++ AAM+KD
Sbjct: 291 VHMRGLPYKATENDIYNFFSPF--NPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 170 RMTLGSRYIELFPSS 184
R + RYIELF +S
Sbjct: 349 RANMQHRYIELFLNS 363
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +G +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGSQSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G YIE+F S EMD L
Sbjct: 72 KKDRESMGHPYIEVFKSHRTEMDWVL 97
>gi|346473523|gb|AEO36606.1| hypothetical protein [Amblyomma maculatum]
Length = 412
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 19/173 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
+ + + + +GEA+ L V+ LQR+ +++G RY+EVF+SKR E +
Sbjct: 46 MTLSREGRPSGEAYIELESEQDVEVGLQRHNEHIGHRYIEVFKSKRSEMDWVVK------ 99
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
R+ +H + +++ G +RLRGLPF K++I FF + + I +
Sbjct: 100 ----------RSGAHQQ---DSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPT 146
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+ GR TGEAFV+FA + ++ AM K + +G RYIE+F SS +E+ A+ G
Sbjct: 147 DYQGRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEVRSAIGMG 199
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 36/187 (19%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV------------ 79
TGEAF + A+ ++++ +G RY+E+F+S QE AI V
Sbjct: 153 TGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEVRSAIGMGVPKMMRPMGGARP 212
Query: 80 -----SDVRGGSPHR-SIPRAKSHDEG------------KDSAVH---TG-ILRLRGLPF 117
+D GG P R + R + G H TG + +RGLPF
Sbjct: 213 GPYDRADRFGGGPSRYGMGRGGRNFRGFVEEDGYGGFGGPGGGAHFSATGHFVHMRGLPF 272
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
A + DI +FF+ ++ ++H+ GRP+GE VEFA E++ AM+KD+ + RY
Sbjct: 273 RATERDIFEFFQP--MNPVNVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRY 330
Query: 178 IELFPSS 184
IELF +S
Sbjct: 331 IELFLNS 337
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFK----DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
+LR+RGLP+S K++I++FF + + +H+T++ +GRP+GEA++E + +D +
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTSKECNIKGGINGVHMTLSREGRPSGEAYIELESEQDVEV 70
Query: 165 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + +G RYIE+F S EMD + R
Sbjct: 71 GLQRHNEHIGHRYIEVFKSKRSEMDWVVKR 100
>gi|348560746|ref|XP_003466174.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cavia
porcellus]
Length = 414
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 99/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTI + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 33 CTIRD---GVAGVHFIYTREGRQSGEAFVELESEDDVKMALKKDRESMGHRYIEVFKSHR 89
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 90 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIVQFF 130
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 131 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 190
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVL 96
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 289 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 346
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 347 DRANMQHRYIELFLNS 362
>gi|229485446|sp|B2RYJ8.1|ESRP2_RAT RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|187469463|gb|AAI66804.1| Rbm35b protein [Rattus norvegicus]
Length = 716
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 278 LCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 329
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++DF D +
Sbjct: 330 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLL 381
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 382 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 436
Score = 89.4 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A
Sbjct: 380 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAA 439
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 440 SPLLPTLTAPLLPIPFPLAGGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 493
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ + E + AA + + + RY+E+ P S EEM L
Sbjct: 494 HGVHMVLNQQGRPSGDAFIQMMSVERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 553
Query: 195 G 195
G
Sbjct: 554 G 554
Score = 62.8 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 306
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 307 HKHHMGVRYIEVYKATGEE 325
>gi|157818053|ref|NP_001100893.1| epithelial splicing regulatory protein 2 [Rattus norvegicus]
gi|149038076|gb|EDL92436.1| RNA binding motif protein 35b (predicted) [Rattus norvegicus]
Length = 717
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++DF D +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 89.4 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAA 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SPLLPTLTAPLLPIPFPLAGGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ + E + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMMSVERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 62.8 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>gi|325303152|tpg|DAA34329.1| TPA_inf: splicing factor hnRNP-F [Amblyomma variegatum]
Length = 231
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 19/173 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
+ + + + +GEA+ L ++ LQR+ +++G RY+EVF+SKR E +
Sbjct: 46 MTLSREGRPSGEAYIELESEQDMEIGLQRHNEHIGHRYIEVFKSKRSEMDWVVK------ 99
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
R+ +H + +++ G +RLRGLPF K++I FF + + I +
Sbjct: 100 ----------RSGAHQQ---DSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPT 146
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+ GR TGEAFV+FA + ++ AM K + +G RYIE+F SS +E+ A+ G
Sbjct: 147 DYQGRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEVRSAVRMG 199
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFF--KDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKA 164
+LR+RGLP+S K++I++FF K+ + + +H+T++ +GRP+GEA++E + +D +
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTAKECHIKGGINGVHMTLSREGRPSGEAYIELESEQDMEI 70
Query: 165 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + +G RYIE+F S EMD + R
Sbjct: 71 GLQRHNEHIGHRYIEVFKSKRSEMDWVVKR 100
>gi|126328002|ref|XP_001371131.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 466
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 96/179 (53%), Gaps = 23/179 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I L + + FV+ + K +GEAF L ++ AL+++R+ MG RYVEVFRS
Sbjct: 34 CKI---LNEEAGIHFVYTREGKLSGEAFVELKSEDEITLALKKDRETMGHRYVEVFRSSN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 IEMDWVLKHTAPN--------------SLDTASD-----GFVRLRGLPFRCNKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
+ + I + ++ GR +GEAFV+FA+ E ++ A+ K++ T+G RYIE+F SS E
Sbjct: 132 SGLEIMPNGITLPVDFQGRNSGEAFVQFASQEIAEKALKKNKETIGHRYIEIFKSSQAE 190
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDF-VLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S DI FF + +L+E++ IH +G+ +GEAFVE + ++ A+
Sbjct: 12 VVKVRGLPWSCSASDIQQFFSECKILNEEAGIHFVYTREGKLSGEAFVELKSEDEITLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F SS+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFRSSNIEMDWVL 97
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+ A ++DI DFF L +I + DGR TGEA VEFA ED+ AAM+KD
Sbjct: 284 VHMRGLPYKATENDICDFFSP--LKPVGAYIEIGPDGRVTGEADVEFATHEDAVAAMSKD 341
Query: 170 RMTLGSRYIELFPSSHEEMD 189
+ + RYIELF +S E D
Sbjct: 342 KANMQHRYIELFLNSTIEAD 361
>gi|224002324|ref|XP_002290834.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974256|gb|EED92586.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 387
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 63/91 (69%)
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 163
HTG +RLRGLPF A K DI+DFF+++ E S+ +T DGR TGE +V F +A+D+K
Sbjct: 293 GTHTGYVRLRGLPFQASKQDILDFFQEYNPIESSVLLTYRGDGRSTGEGYVAFKDADDAK 352
Query: 164 AAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
AMA R T+GSRYIELF S+ EE ++R
Sbjct: 353 EAMALHRSTIGSRYIELFISNKEEHARNVAR 383
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 15 QLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
Q + ++DV+ V + +GEAF V P+ LQR+ Q+MGRRY+EVF+ KR +YY A
Sbjct: 113 QGLVVIDVVLV--PHAESGEAFVVFANPMDFQMGLQRDHQSMGRRYLEVFQGKRSDYYAA 170
Query: 75 IANEVSDVRGG 85
IA++ +GG
Sbjct: 171 IASQNHHWQGG 181
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+R+RGLPF A +D++ FF+ V+ I + + +GEAFV FAN D + + +D
Sbjct: 94 VRVRGLPFEATLEDVLVFFQGLVV----IDVVLVPHAE-SGEAFVVFANPMDFQMGLQRD 148
Query: 170 RMTLGSRYIELF 181
++G RY+E+F
Sbjct: 149 HQSMGRRYLEVF 160
>gi|410923501|ref|XP_003975220.1| PREDICTED: G-rich sequence factor 1-like [Takifugu rubripes]
Length = 380
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 22/164 (13%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84
++K + TG AF + V+ AL+++RQ +G RYVEV+ EV++
Sbjct: 125 LNKMGRPTGIAFIEMEDEEDVNKALEKHRQYLGPRYVEVY-------------EVTE--- 168
Query: 85 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 144
S +I + + D G++RLRGLPFS+ K DI FF D + E+ I I +
Sbjct: 169 -SDAEAIMEKATGSQADD-----GVVRLRGLPFSSTKADIAQFFSDLDIVENGITIITDH 222
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
GR +GEAFV+F + E+++ A+ +DR +G+RYIE+FPS EE+
Sbjct: 223 AGRNSGEAFVQFFSKEEAEKALLRDRAVMGTRYIEVFPSRSEEV 266
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 6/171 (3%)
Query: 17 MDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV+ + + +GEAF + + AL R+R MG RY+EVF S+ +E Y
Sbjct: 209 LDIVENGITIITDHAGRNSGEAFVQFFSKEEAEKALLRDRAVMGTRYIEVFPSRSEEVYS 268
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
+ S V + H R + +++ + +RGLPF +D+++FF+ V+
Sbjct: 269 SKRMRNSGV-SDTGHSVRNRRTTSQSLVQNSLPLHYIHMRGLPFQVSGEDVVNFFRPLVV 327
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
S+ + + DGRP+GEA V F ED+ AAM++DR +G RYIELF +S
Sbjct: 328 SK--MLMEFGPDGRPSGEADVYFGRHEDAVAAMSRDREHIGGRYIELFLNS 376
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 84 GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHIT 141
GGS P E ++ I++++GL +S D++ FF D + + IH T
Sbjct: 65 GGSCDEYPPLPAYQHETEEERKEVFIVQVKGLLWSCTPQDLLKFFSDCRIRDGVKGIHFT 124
Query: 142 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+N GRPTG AF+E + ED A+ K R LG RY+E++ + + + + +
Sbjct: 125 LNKMGRPTGIAFIEMEDEEDVNKALEKHRQYLGPRYVEVYEVTESDAEAIMEKA 178
>gi|431914602|gb|ELK15790.1| Heterogeneous nuclear ribonucleoprotein F [Pteropus alecto]
Length = 414
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C IH I F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CIIHDGATGI---HFIYTREGRQSGEAFVELESEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F ++ + + IH +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGATGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|427789699|gb|JAA60301.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 411
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 19/173 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
+ + + + +GEA+ L ++ LQR+ +++G RY+EVF+SKR E +
Sbjct: 46 MTLSREGRPSGEAYIELESEQDMEIGLQRHNEHIGHRYIEVFKSKRSEMDWVVK------ 99
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
R+ +H + +++ G +RLRGLPF K++I FF + + I +
Sbjct: 100 ----------RSGAHQQ---DSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPT 146
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+ GR TGEAFV+FA + ++ AM K + +G RYIE+F SS +E+ A+ G
Sbjct: 147 DYQGRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVGMG 199
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 36/187 (19%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR-------- 83
TGEAF + A+ ++++ +G RY+E+F+S QE A+ V +
Sbjct: 153 TGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVGMGVPKMMRPMGSARP 212
Query: 84 ---------GGSPHR-SIPRAKSHDEG---KDSAVHTG-------------ILRLRGLPF 117
GG P R + R + G +D G + +RGLPF
Sbjct: 213 GPYDRAERFGGGPSRYGMGRGGRNFRGFVEEDGYADFGGSGGGARFSATGHFVHMRGLPF 272
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
A + DI +FF+ ++ ++H+ GRP+GE VEFA E++ AM+KD+ + RY
Sbjct: 273 RATERDIFEFFQP--MNPINVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRY 330
Query: 178 IELFPSS 184
IELF +S
Sbjct: 331 IELFLNS 337
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD----FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
+LR+RGLP+S K++I++FF + +H+T++ +GRP+GEA++E + +D +
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTSKECHIKGGINGVHMTLSREGRPSGEAYIELESEQDMEI 70
Query: 165 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + +G RYIE+F S EMD + R
Sbjct: 71 GLQRHNEHIGHRYIEVFKSKRSEMDWVVKR 100
>gi|344253993|gb|EGW10097.1| Epithelial splicing regulatory protein 2 [Cricetulus griseus]
Length = 697
Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 259 LCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 310
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 311 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLL 362
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 363 FVRHPDGRPTGDAFALFACEEQAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 417
Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + Q AL+R++ +G+RY+E+FRS E + + A
Sbjct: 361 LLFVRHPDGRPTGDAFALFACEEQAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAT 420
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 421 SPLLPTLTAPLLPIPFPLAGGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 474
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ ++E + AA + + + RY+E+ P S EEM L
Sbjct: 475 HGVHMVLNQQGRPSGDAFIQMMSSERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 534
Query: 195 G 195
G
Sbjct: 535 G 535
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 228 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 287
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 288 HKHHMGVRYIEVYKATGEE 306
>gi|354484335|ref|XP_003504344.1| PREDICTED: epithelial splicing regulatory protein 2 [Cricetulus
griseus]
Length = 707
Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 269 LCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 320
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 321 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLL 372
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 373 FVRHPDGRPTGDAFALFACEEQAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 427
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + Q AL+R++ +G+RY+E+FRS E + + A
Sbjct: 371 LLFVRHPDGRPTGDAFALFACEEQAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAT 430
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 431 SPLLPTLTAPLLPIPFPLAGGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 484
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ ++E + AA + + + RY+E+ P S EEM L
Sbjct: 485 HGVHMVLNQQGRPSGDAFIQMMSSERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 544
Query: 195 G 195
G
Sbjct: 545 G 545
Score = 62.4 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 238 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 297
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 298 HKHHMGVRYIEVYKATGEE 316
>gi|351714958|gb|EHB17877.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 414
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTI + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 33 CTIRD---GVAGVHFIYTREGRQSGEAFVELESEDDVKMALKKDRESMGHRYIEVFKSHR 89
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 90 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIVQFF 130
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 131 SGLEIVPNGITLPVDPKGKITGEAFVQFASQELAEKALWKHKERIGHRYIEVFKSSQEEV 190
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVL 96
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 289 CVHMRGLPYKATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 346
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 347 DRANMQHRYIELFLNS 362
>gi|188528963|ref|NP_001120907.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Xenopus
(Silurana) tropicalis]
gi|183986477|gb|AAI66302.1| hnrnph3 protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 21/163 (12%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA-NEVSDVRGG 85
K + +GEAF +L + AL+++R+ MG RY+EVF+S E + N DV
Sbjct: 43 KEGRPSGEAFIILDTEEDLKKALEKDRKYMGHRYIEVFKSNNTEMEWVLKHNSTGDV--- 99
Query: 86 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 145
D D G +RLRGLPF K++I+ FF + + I +T++
Sbjct: 100 ------------DTASD-----GTVRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQ 142
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 143 GRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSSRSEI 185
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I+R+RGLP+S K+++++FF + + E IH T + +GRP+GEAF+ ED K A+
Sbjct: 6 IVRVRGLPWSCTKEEVLEFFSECSIIEGVSGIHFTTSKEGRPSGEAFIILDTEEDLKKAL 65
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR +G RYIE+F S++ EM+ L
Sbjct: 66 EKDRKYMGHRYIEVFKSNNTEMEWVL 91
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 5/94 (5%)
Query: 94 AKSHDEGKD--SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 150
A+++ G D + H+G + +RGLPF A + DI +FF L+ +HI + +DGR TG
Sbjct: 265 AQAYGGGADGTTGFHSGHFVHMRGLPFRATESDIANFFSP--LTPIRVHIDVGADGRATG 322
Query: 151 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
EA VEFA ED+ AAM+KD+ + RYIELF +S
Sbjct: 323 EADVEFATHEDAVAAMSKDKNNMQHRYIELFLNS 356
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L V + TGEAF + AL ++++ +G RY+E+F+S R E
Sbjct: 136 TLTVDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSSRSE 184
>gi|197246805|gb|AAI68807.1| hnrnph3 protein [Xenopus (Silurana) tropicalis]
Length = 413
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 21/163 (12%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA-NEVSDVRGG 85
K + +GEAF +L + AL+++R+ MG RY+EVF+S E + N DV
Sbjct: 43 KEGRPSGEAFIILDTEEDLKKALEKDRKYMGHRYIEVFKSNNTEMEWVLKHNSTGDV--- 99
Query: 86 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 145
D D G +RLRGLPF K++I+ FF + + I +T++
Sbjct: 100 ------------DTASD-----GTVRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQ 142
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 143 GRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSSRSEI 185
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I+R+RGLP+S K+++++FF + + E IH T + +GRP+GEAF+ ED K A+
Sbjct: 6 IVRVRGLPWSCTKEEVLEFFSECSIIEGVSGIHFTTSKEGRPSGEAFIILDTEEDLKKAL 65
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR +G RYIE+F S++ EM+ L
Sbjct: 66 EKDRKYMGHRYIEVFKSNNTEMEWVL 91
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 5/94 (5%)
Query: 94 AKSHDEGKD--SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 150
A+++ G D + H+G + +RGLPF A + DI +FF L+ +HI + +DGR TG
Sbjct: 265 AQAYGGGADGTTGFHSGHFVHMRGLPFRATESDIANFFSP--LTPIRVHIDVGADGRATG 322
Query: 151 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
EA VEFA ED+ AAM+KD+ + RYIELF +S
Sbjct: 323 EADVEFATHEDAVAAMSKDKNNMQHRYIELFLNS 356
Score = 36.2 bits (82), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L V + TGEAF + AL ++++ +G RY+E+F+S R E
Sbjct: 136 TLTVDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSSRSE 184
>gi|194042674|ref|XP_001929089.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5 [Sus
scrofa]
gi|335301642|ref|XP_003359253.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Sus scrofa]
gi|350592730|ref|XP_003483523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Sus scrofa]
Length = 414
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTI V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIRD---GAAGVHFIYTREGRQSGEAFVELESEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA +++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHDEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>gi|355686618|gb|AER98119.1| epithelial splicing regulatory protein 2 [Mustela putorius furo]
Length = 650
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 213 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 264
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG +D++ F D +
Sbjct: 265 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPEDVLGFLGPECPVTGGADGLL 316
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 317 FVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRSTAAEVQQVLNR 371
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 315 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRSTAAEVQQVLNRYAS 374
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 375 SPLLPTLTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 428
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + RY+E+ P S EEM L
Sbjct: 429 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQGCHKKVMKERYVEVVPCSTEEMSRVLMG 488
Query: 195 G 195
G
Sbjct: 489 G 489
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 182 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 241
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 242 HKHHMGVRYIEVYKATGEE 260
>gi|428170681|gb|EKX39604.1| hypothetical protein GUITHDRAFT_54250, partial [Guillardia theta
CCMP2712]
Length = 186
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 89/180 (49%), Gaps = 24/180 (13%)
Query: 10 CTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQ 69
C I L D ++ + H + GEAF AL R+R M +RYVEV+ S
Sbjct: 23 CAI---LKDGINFVLSH-GGRPAGEAFVTFETENDCRRALMRDRDLMNKRYVEVYPSSED 78
Query: 70 EYYKAIANEVSDVR-----GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDI 124
E + AI + VS + GG P S + G+++LRGLP+S DDI
Sbjct: 79 EKHVAITSAVSYAQDDQSSGGDP---------------STSYKGVVKLRGLPYSITADDI 123
Query: 125 MDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
FF + ED I I +N + R GEAFVEF + A+ KDR +GSRY+E+F SS
Sbjct: 124 RSFFGHLSIKEDGIIICLNRERRNNGEAFVEFTDEYVVDEAVKKDRQMIGSRYVEVFRSS 183
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I R+RGLP+SA DI +FFK + +D I+ ++ GRP GEAFV F D + A+ +
Sbjct: 1 IARVRGLPYSAATADIEEFFKGCAILKDGINFVLSHGGRPAGEAFVTFETENDCRRALMR 60
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR + RY+E++PSS +E A++
Sbjct: 61 DRDLMNKRYVEVYPSSEDEKHVAIT 85
Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++ +++ + GEAF VD A++++RQ +G RYVEVFRS + +
Sbjct: 138 IICLNRERRNNGEAFVEFTDEYVVDEAVKKDRQMIGSRYVEVFRSSKAD 186
>gi|348572536|ref|XP_003472048.1| PREDICTED: epithelial splicing regulatory protein 2 [Cavia
porcellus]
Length = 719
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 281 LCLNAQGRRNGEALIRFTDREQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 332
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 333 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLSFLGPECPVTGGADGLL 384
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 385 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 439
Score = 89.0 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + S
Sbjct: 383 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 442
Query: 81 DVRGGS---PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
S P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 443 SPLLPSLTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIQP 496
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GR +G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 497 HGVHMVLNQQGRLSGDAFIQMTSAERALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMG 556
Query: 195 G 195
G
Sbjct: 557 G 557
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FF+ ++ + + +N+ GR GEA + F + E A+ +
Sbjct: 250 VVRARGLPWQSSDQDVARFFRGLNIARGGVALCLNAQGRRNGEALIRFTDREQRDLALQR 309
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 310 HKHHMGVRYIEVYKATGEE 328
>gi|291243063|ref|XP_002741419.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H1-like
[Saccoglossus kowalevskii]
Length = 628
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 20/161 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GE F L V AL+R+ +MG RYVEVFRSK+ E I RS
Sbjct: 138 SGECFIELETEEDVKVALERHNDHMGHRYVEVFRSKKSEMDWVIK------------RSG 185
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P A ++G +RLRGLPF K++I FF + + I + + GR TGE
Sbjct: 186 PNAVQDNDG--------CVRLRGLPFGCSKEEIAQFFGGLEIVANGITLPTDYHGRSTGE 237
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
A+V+F+ + ++ A+ K + +G RYIE+F SS EE+ +AL
Sbjct: 238 AYVQFSTKDIAENALGKHKERIGHRYIEIFKSSKEEVRQAL 278
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 9/100 (9%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFV 154
HD+G ++R RGLP+SA D++ FFK + +E+ I T +GRP+GE F+
Sbjct: 91 HDDGN-------VIRARGLPWSATADEVRSFFKGCKIAETENGIKFTYTREGRPSGECFI 143
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ED K A+ + +G RY+E+F S EMD + R
Sbjct: 144 ELETEEDVKVALERHNDHMGHRYVEVFRSKKSEMDWVIKR 183
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ +RGLPF A +I FF+ ++ +HI S GR TGEA VEFA ED+ A M+K
Sbjct: 427 VIHMRGLPFRATDQEIRQFFQP--VNPTKVHIQYESGGRATGEADVEFATHEDAVAGMSK 484
Query: 169 DRMTLGSRYIELFPSSHE 186
D+ + RYIELF +S +
Sbjct: 485 DKAHMQHRYIELFLNSSQ 502
>gi|417404143|gb|JAA48844.1| Putative rna-binding protein fusilli [Desmodus rotundus]
Length = 717
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D+++F D +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLEFLGPECPVTGGADGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SPLLPTLTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>gi|444709335|gb|ELW50356.1| Epithelial splicing regulatory protein 2 [Tupaia chinensis]
Length = 848
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 410 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 461
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 462 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPDCPVTGGAEGLL 513
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ +AL+R
Sbjct: 514 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQALTR 568
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 97/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E +A+ A+
Sbjct: 512 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQALTRYAS 571
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 572 SPLLPTLTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 625
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 626 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 685
Query: 195 G 195
G
Sbjct: 686 G 686
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FF+ ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 379 VVRARGLPWQSSDQDVARFFRGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 438
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 439 HKHHMGVRYIEVYKATGEE 457
>gi|291232399|ref|XP_002736133.1| PREDICTED: fusilli-like [Saccoglossus kowalevskii]
Length = 636
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 18/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ ++G RY+EV+++ +E+ K A S+
Sbjct: 252 LCLNPQGRRNGEALVRFTCTEHRDLALQRHKHHLGHRYIEVYKATGEEFLKIAAGSSSEA 311
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIH 139
S+ KD+ H I+R+RGLPF+A D++ FF D +E+ +
Sbjct: 312 -------------SNFLAKDNG-HI-IVRMRGLPFTATAKDVLVFFGDECPVSGAEEGVL 356
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGR TG+AFV F+ ++ +A+AK + LGSRYIELF S+ E+ + LSR
Sbjct: 357 FVRYPDGRSTGDAFVLFSTEANATSALAKHKENLGSRYIELFRSTTAEVQQVLSR 411
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 9/181 (4%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV + + + TG+AF + AL ++++N+G RY+E+FRS E + ++
Sbjct: 355 VLFVRYPDGRSTGDAFVLFSTEANATSALAKHKENLGSRYIELFRSTTAEVQQVLSRYQQ 414
Query: 81 DV---RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
G P S+P S +R+RGLPFSA +DIM F +F +
Sbjct: 415 HPLIPNGPPPTGSVPILPQQMITSGSV--RDCIRMRGLPFSASVEDIMKFLGEFAHYIRP 472
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA R +G RYIE+F S +EM+ L
Sbjct: 473 HGVHMVLNQQGRPSGDAFIQMISAEKALHAAQQCHRKHMGERYIEVFQCSGDEMNFVLMG 532
Query: 195 G 195
G
Sbjct: 533 G 533
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+++ RGLP+ + D+ FFK + + + + +N GR GEA V F E A+ +
Sbjct: 221 VIKARGLPWQSSDKDVAKFFKGLDIGKGGVALCLNPQGRRNGEALVRFTCTEHRDLALQR 280
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ LG RYIE++ ++ EE
Sbjct: 281 HKHHLGHRYIEVYKATGEEF 300
>gi|351714959|gb|EHB17878.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 413
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 99/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTI + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 33 CTIRD---GVAGVHFIYTREGRQSGEAFVELESEDDVKMALKKDRESMGHRYIEVFKSHR 89
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 90 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIVQFF 130
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS +E+
Sbjct: 131 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALRKHKERIGHRYIEVFKSSQQEV 190
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVL 96
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AM+K
Sbjct: 288 CVHMRGLPYKATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEEAVPAMSK 345
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 346 DRANMQHRYIELFLNS 361
>gi|291390369|ref|XP_002711679.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Oryctolagus cuniculus]
Length = 719
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 281 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 332
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 333 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLSFLGPECPVTGGADGLL 384
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 385 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 439
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 383 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 442
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P +P + G+D +RLRGLP++A +DI+ F + +
Sbjct: 443 SSLLPTLTAPLLPLPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 496
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD-RMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 497 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRSHKKVMKERYVEVVPCSTEEMSRVLMG 556
Query: 195 G 195
G
Sbjct: 557 G 557
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 250 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 309
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 310 HKHHMGVRYIEVYKATGEE 328
>gi|301775691|ref|XP_002923260.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Ailuropoda melanoleuca]
gi|281349933|gb|EFB25517.1| hypothetical protein PANDA_012380 [Ailuropoda melanoleuca]
Length = 723
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 285 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 336
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 337 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLGFLGPECPVTGGADGLL 388
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 389 FVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRSTAAEVQQVLNR 443
Score = 92.4 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 387 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRSTAAEVQQVLNRYAS 446
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 447 SPLLPTLTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 500
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 501 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 560
Query: 195 G 195
G
Sbjct: 561 G 561
Score = 63.2 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 254 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 313
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 314 HKHHMGVRYIEVYKATGEE 332
>gi|28849887|ref|NP_789808.1| epithelial splicing regulatory protein 2 [Mus musculus]
gi|81914552|sp|Q8K0G8.1|ESRP2_MOUSE RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|21618665|gb|AAH31444.1| RNA binding motif protein 35b [Mus musculus]
gi|148679398|gb|EDL11345.1| RNA binding motif protein 35b [Mus musculus]
Length = 717
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 89.0 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAA 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SPLLPTLTAPLLPIPFPLAGGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ + E + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMMSVERALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>gi|260834915|ref|XP_002612455.1| hypothetical protein BRAFLDRAFT_136434 [Branchiostoma floridae]
gi|229297832|gb|EEN68464.1| hypothetical protein BRAFLDRAFT_136434 [Branchiostoma floridae]
Length = 411
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 22/167 (13%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
K + +GEAF + + AL ++ Q+MG RY+EVFRSK E + + D
Sbjct: 42 KEGRPSGEAFVEVETSEDFEKALAKHNQHMGHRYIEVFRSKVSEMEWVVKHSGQD----- 96
Query: 87 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
V+ GI+RLRGLPF K++I FF + + I + + G
Sbjct: 97 -----------------QVNDGIVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQG 139
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
R TGEAFV+F + + ++ A+ K + +G RYIE+F SS E+ E +S
Sbjct: 140 RSTGEAFVQFTSQDIAEKALGKHKEKIGHRYIEIFKSSRNEVRECMS 186
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 12/89 (13%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--------SIHITMNSDGRPTGEAFVEFANAE 160
++R+RGLP+SA +++ K+F+ SE IH T + +GRP+GEAFVE +E
Sbjct: 3 VVRMRGLPWSATCEEV----KNFLTSEGCKVKGGDGGIHFTFSKEGRPSGEAFVEVETSE 58
Query: 161 DSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
D + A+AK +G RYIE+F S EM+
Sbjct: 59 DFEKALAKHNQHMGHRYIEVFRSKVSEME 87
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLPF A +DI FF+ V + IH D R TGEA VEFA+ +D+ AAMAK
Sbjct: 279 FVHMRGLPFKAASEDIEQFFQPLVPMKVQIHY--GPDKRATGEADVEFASHDDAVAAMAK 336
Query: 169 DRMTL 173
D+ +
Sbjct: 337 DKANM 341
>gi|296478109|tpg|DAA20224.1| TPA: fusilli-like [Bos taurus]
Length = 717
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLGFLGPECPVTGGADGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 92.4 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SPLLPTLTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAVDIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 113 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 172
RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ + +
Sbjct: 252 RGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHH 311
Query: 173 LGSRYIELFPSSHEE 187
+G RYIE++ ++ EE
Sbjct: 312 MGVRYIEVYKATGEE 326
>gi|194208736|ref|XP_001498922.2| PREDICTED: epithelial splicing regulatory protein 2-like [Equus
caballus]
Length = 659
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 221 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 272
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 273 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLGFLGPECPVTGGADGLL 324
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 325 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 379
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + S
Sbjct: 323 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 382
Query: 81 DV---RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + +D +RLRGLP++A +DI+ F + +
Sbjct: 383 SPLLPTVTAPLLPIPFPLAAGTERDC------VRLRGLPYTATIEDILSFLGEAAADIQP 436
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + A + + + RY+E+ P S +EM L
Sbjct: 437 HGVHMVLNQQGRPSGDAFIQMTSAERALGAAQRCHKKVMKERYVEVVPCSTDEMSRVLMG 496
Query: 195 G 195
G
Sbjct: 497 G 497
Score = 63.2 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 190 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 249
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 250 HKHHMGVRYIEVYKATGEE 268
>gi|410983807|ref|XP_003998228.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Felis catus]
Length = 717
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLGFLGPECPVTGGADGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRSTAAEVQQVLNR 437
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRSTAAEVQQVLNRYAS 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SPLLPTLTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>gi|410983809|ref|XP_003998229.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Felis catus]
Length = 726
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 288 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 339
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 340 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLGFLGPECPVTGGADGLL 391
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 392 FVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRSTAAEVQQVLNR 446
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 390 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRSTAAEVQQVLNRYAS 449
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 450 SPLLPTLTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 503
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 504 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 563
Query: 195 G 195
G
Sbjct: 564 G 564
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
H D ++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F
Sbjct: 245 HSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRF 304
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
++E A+ + + +G RYIE++ ++ EE
Sbjct: 305 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 335
>gi|329664166|ref|NP_001192614.1| epithelial splicing regulatory protein 2 [Bos taurus]
Length = 717
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLGFLGPECPVTGGADGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 92.4 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SPLLPTLTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAVDIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>gi|348513989|ref|XP_003444523.1| PREDICTED: G-rich sequence factor 1-like [Oreochromis niloticus]
Length = 400
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 81/156 (51%), Gaps = 13/156 (8%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS-----------DVRGGSPHRSIPR 93
D ALQR+R+ +G RY+EVF S+R E + S D R +RS
Sbjct: 245 ADEALQRDREIIGNRYIEVFPSRRDEIHSTWGRRTSPFSSQSRPQSVDRRSAPENRSPAS 304
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
+ S V + +RGLPF A +DI+ FF +S+ I I DGRP+GEA
Sbjct: 305 PPPSLHLQSSTVPLHYIHVRGLPFQASGEDIVKFFYPLAVSK--ILIECGPDGRPSGEAD 362
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
V F D+ AAM+KDRM +G RYIELF +S + D
Sbjct: 363 VYFHCHRDAVAAMSKDRMNIGERYIELFLNSVPDCD 398
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 22/172 (12%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L + + + +G AF + + V AL+++RQ +G RYVEV+ +V
Sbjct: 128 LTLDRLGRPSGRAFIEMEHEEDVSKALEKHRQYLGPRYVEVY----------------EV 171
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
G +I + + G D G++ LRGLPF+ +DDI+ FF ++E+ I +
Sbjct: 172 TNGDAE-AILKKATQPLGAD-----GVVLLRGLPFTCTEDDIVHFFSGLEITENGITMVT 225
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+S GR +G A+V+F + E + A+ +DR +G+RYIE+FPS +E+ R
Sbjct: 226 DSRGRKSGVAYVQFTSQEAADEALQRDREIIGNRYIEVFPSRRDEIHSTWGR 277
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPT 149
P H E + I++++GLP+S D++ FF + + + IH+T++ GRP+
Sbjct: 78 PLPAYHPETEPETKEVYIVQVKGLPWSCTTQDLLQFFSECRIRDGVKGIHLTLDRLGRPS 137
Query: 150 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
G AF+E + ED A+ K R LG RY+E++ ++ + + L +
Sbjct: 138 GRAFIEMEHEEDVSKALEKHRQYLGPRYVEVYEVTNGDAEAILKKA 183
>gi|426242551|ref|XP_004015136.1| PREDICTED: epithelial splicing regulatory protein 2 [Ovis aries]
Length = 591
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 153 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 204
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 205 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLGFLGPECPVTGGADGLL 256
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 257 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 311
Score = 92.4 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 255 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 314
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 315 SPLLPTLTAPLLPIPFPLAAGSGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 368
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 369 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMG 428
Query: 195 G 195
G
Sbjct: 429 G 429
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 122 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 181
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 182 HKHHMGVRYIEVYKATGEE 200
>gi|73957227|ref|XP_851504.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Canis lupus familiaris]
Length = 717
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLGFLGPECPVTGGADGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRSTAAEVQQVLNR 437
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRSTAAEVQQVLNRYAS 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SPLLPALTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>gi|332227574|ref|XP_003262967.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Nomascus leucogenys]
Length = 727
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 289 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 340
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 341 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLL 392
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 393 FVRHPDGRPTGDAFALFACEELAQAALRRHKAMLGKRYIELFRSTAAEVQQVLNR 447
Score = 92.8 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 391 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKAMLGKRYIELFRSTAAEVQQVLNRYAS 450
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 451 SPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 504
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 505 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 564
Query: 195 G 195
G
Sbjct: 565 G 565
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 318 HKHHMGVRYIEVYKATGEE 336
>gi|332227572|ref|XP_003262966.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Nomascus leucogenys]
Length = 717
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKAMLGKRYIELFRSTAAEVQQVLNR 437
Score = 92.8 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKAMLGKRYIELFRSTAAEVQQVLNRYAS 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>gi|442755167|gb|JAA69743.1| Putative splicing factor hnrnp-f [Ixodes ricinus]
Length = 279
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 97/180 (53%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C IH + + F++ + + +GEAF L V AL+++R+ MG RY+EVF+S R
Sbjct: 34 CIIHD---GVSGIHFIYTREGRQSGEAFVELESEDDVKMALKKDRERMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKHSGPN--------------SADTAND-----GFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E++
Sbjct: 132 SGLEIVPNRITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEKV 191
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F ++ + IH +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGVSGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR +G RYIE+F S EMD L
Sbjct: 72 KKDRERMGHRYIEVFKSHRTEMDWVL 97
>gi|297699054|ref|XP_002826612.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Pongo abelii]
Length = 727
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 289 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 340
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 341 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLL 392
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 393 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 92.8 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + S
Sbjct: 391 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 450
Query: 81 DV---RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 451 GPVLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 504
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 505 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 564
Query: 195 G 195
G
Sbjct: 565 G 565
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 318 HKHHMGVRYIEVYKATGEE 336
>gi|297699056|ref|XP_002826613.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Pongo abelii]
Length = 717
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 92.4 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + S
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 440
Query: 81 DV---RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 GPVLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>gi|213513203|ref|NP_001135339.1| G-rich sequence factor 1 [Salmo salar]
gi|209734348|gb|ACI68043.1| G-rich sequence factor 1 [Salmo salar]
Length = 400
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 27/179 (15%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L V+++ K G+AF L + V AL+++RQ +G RY+EVF EV++
Sbjct: 135 LTVNRDGKPNGQAFIELEHEDDVGKALEKHRQYLGPRYIEVF-------------EVTN- 180
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
S +I + +D G++R+RGLP+S + D+M FF ++ED + +
Sbjct: 181 ---SDAETILKKSVQLPARD-----GVVRIRGLPYSCTETDVMLFFSGLDVAEDGVTLVT 232
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM-----DEALSRGR 196
+ GR +GEA+V+F E + A+ +DR +G+RYIE+FPS E+ E++ GR
Sbjct: 233 DYRGRNSGEAYVQFLTQEQADEALTRDRQVIGNRYIEVFPSRRSEIGGRKKTESVEEGR 291
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 83/157 (52%), Gaps = 6/157 (3%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE-VSDVRGG---SP 87
+GEA+ Q D AL R+RQ +G RY+EVF S+R E E V + R P
Sbjct: 239 SGEAYVQFLTQEQADEALTRDRQVIGNRYIEVFPSRRSEIGGRKKTESVEEGRNSIQSQP 298
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
HR + H S++ + +RGLPF A DDI+ FF LS I + DGR
Sbjct: 299 HRPAAQPSRHGSHPVSSLPQHFVHMRGLPFQATGDDIVQFFSPLALSR--ILVEFGPDGR 356
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+GEA V F + +D+ +AM +D+ + RYIELF +S
Sbjct: 357 ASGEADVYFTSHQDAVSAMTRDKAHMQERYIELFLNS 393
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I+R +GLP+S +D++ FF + + + IH+T+N DG+P G+AF+E + +D A+
Sbjct: 102 IIRAKGLPWSCTTEDLLQFFSECRVRDGVKGIHLTVNRDGKPNGQAFIELEHEDDVGKAL 161
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
K R LG RYIE+F ++ + + L +
Sbjct: 162 EKHRQYLGPRYIEVFEVTNSDAETILKK 189
>gi|74761482|sp|Q9H6T0.1|ESRP2_HUMAN RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|10438126|dbj|BAB15173.1| unnamed protein product [Homo sapiens]
gi|119603620|gb|EAW83214.1| RNA binding motif protein 35B, isoform CRA_a [Homo sapiens]
Length = 727
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 289 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 340
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 341 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLL 392
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 393 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 391 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 450
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 451 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 504
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 505 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 564
Query: 195 G 195
G
Sbjct: 565 G 565
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 318 HKHHMGVRYIEVYKATGEE 336
>gi|403290547|ref|XP_003936375.1| PREDICTED: epithelial splicing regulatory protein 2 [Saimiri
boliviensis boliviensis]
Length = 715
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 277 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 328
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 329 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLL 380
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 381 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 435
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 97/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 379 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 438
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP A + G+D +RLRGLP++A +DI+ F + +
Sbjct: 439 GPLLPTLTAPLLPIPFALAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 492
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 493 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 552
Query: 195 G 195
G
Sbjct: 553 G 553
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 246 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 305
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 306 HKHHMGVRYIEVYKATGEE 324
>gi|114663265|ref|XP_001167050.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1 [Pan
troglodytes]
Length = 727
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 289 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 340
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 341 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLL 392
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 393 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 391 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 450
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 451 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 504
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 505 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 564
Query: 195 G 195
G
Sbjct: 565 G 565
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 318 HKHHMGVRYIEVYKATGEE 336
>gi|390333349|ref|XP_003723691.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Strongylocentrotus purpuratus]
Length = 720
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 18/154 (11%)
Query: 44 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDS 103
Q D ALQR++ N+G+RYVEVF++ E+ + A G S ++ A+ DEG
Sbjct: 273 QRDMALQRHKHNLGKRYVEVFKATGDEFIRVAA-------GTSKEATLFLAR--DEGHI- 322
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAE 160
I+R+RGLPF+A + D++DFF + E+ I +G+ TG+AFV FA+ +
Sbjct: 323 -----IVRMRGLPFTASEKDVVDFFGPEIPVAGGEEGILFVKQKNGKMTGDAFVLFASED 377
Query: 161 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
A++K R LG+RYIE+F S+ E+ + LSR
Sbjct: 378 AVSKALSKHREYLGNRYIEIFRSTTAEVQQVLSR 411
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 24/198 (12%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN--- 77
+LFV KN K TG+AF + V AL ++R+ +G RY+E+FRS E + ++
Sbjct: 355 ILFVKQKNGKMTGDAFVLFASEDAVSKALSKHREYLGNRYIEIFRSTTAEVQQVLSRVQS 414
Query: 78 -----EVSDVRGGSPHRSIP--------RAKSHDEGKDSAVHTGI----LRLRGLPFSAG 120
++ + P IP + + G+ +R+RGLP++A
Sbjct: 415 EPIMADIPQQQVMPPMIPIPIHAMPPHHPHQPPPPPHPHFITAGVVRDCIRMRGLPYNAS 474
Query: 121 KDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT-LGSRY 177
+DIM F + + +H+ +N G+P GEAF++ +AE + A M + RY
Sbjct: 475 IEDIMLFLGEAAQFIRPHGVHMVLNLQGKPNGEAFIQMTSAERACLAAQTCHMKYMRERY 534
Query: 178 IELFPSSHEEMDEALSRG 195
+E+F S EEM L+ G
Sbjct: 535 VEVFQCSGEEMQMVLTSG 552
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
DS ++ RGLP+ A D+ FFK ++ + + +N+ GR GE V F ++E
Sbjct: 214 DSIPDDTAVKARGLPWQASDRDVFRFFKGLNIARGGVALCLNTHGRRNGEVMVHFESSEQ 273
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEE 187
A+ + + LG RY+E+F ++ +E
Sbjct: 274 RDMALQRHKHNLGKRYVEVFKATGDE 299
>gi|313227785|emb|CBY22933.1| unnamed protein product [Oikopleura dioica]
Length = 559
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 18/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L +++N + +GEA + ALQR+RQ+MG RY+EVF++ ++ + A + V
Sbjct: 165 LVLNQNGRRSGEALIRFENSEHRNLALQRHRQHMGNRYIEVFKAPSIDFIQMNAGTLPQV 224
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHI 140
R + G+ S I R+RGLPFSA K+DI+ F + V D I +
Sbjct: 225 E-----RFL--------GQGS---VAIARMRGLPFSASKEDILQFLCEIHIVNGRDGIFL 268
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
++G+PTG+AFV A+ +D+ A+ + + L RY+E+F S+ E+ + L+R
Sbjct: 269 IKTAEGKPTGDAFVLLASEDDAVQALGRHKANLRDRYVEVFRSTGAELHQVLTRA 323
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 108/203 (53%), Gaps = 19/203 (9%)
Query: 6 VQVLCTIHHQLMDIVDVLFVHKN--NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 63
+Q LC IH +++ D +F+ K K TG+AF +L AL R++ N+ RYVEV
Sbjct: 251 LQFLCEIH--IVNGRDGIFLIKTAEGKPTGDAFVLLASEDDAVQALGRHKANLRDRYVEV 308
Query: 64 FRSKRQEYYKAIANEVSD--VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGK 121
FRS E ++ + ++ + GS H +P + S +RLRG+P+SA
Sbjct: 309 FRSTGAELHQVLTRAMAAPIIPPGS-HTGLPFMMAQQYIPSSV--RNCVRLRGMPYSATL 365
Query: 122 DDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAE-DSKAAMAKD-----RMT 172
+DIM+F + F+L +H+ +N GRP+G+AF++ E S+ A+ + +
Sbjct: 366 EDIMNFLGESSQFILPA-GVHMVLNQQGRPSGDAFIQLQAHEFASRVALDVNKGGCHKKH 424
Query: 173 LGSRYIELFPSSHEEMDEALSRG 195
+G RY+E+F S +EM+ L G
Sbjct: 425 MGERYVEVFQCSGDEMNLVLMGG 447
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+R+RG+P+ D+ FF+ + + + +N +GR +GEA + F N+E A+ +
Sbjct: 135 VRVRGIPWQCSDHDLAKFFRGLNIPSGGVSLVLNQNGRRSGEALIRFENSEHRNLALQRH 194
Query: 170 RMTLGSRYIELF 181
R +G+RYIE+F
Sbjct: 195 RQHMGNRYIEVF 206
>gi|426382631|ref|XP_004057907.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Gorilla gorilla gorilla]
Length = 727
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 289 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 340
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 341 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLL 392
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 393 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 391 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 450
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 451 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 504
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 505 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 564
Query: 195 G 195
G
Sbjct: 565 G 565
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 318 HKHHMGVRYIEVYKATGEE 336
>gi|114663263|ref|XP_511052.2| PREDICTED: epithelial splicing regulatory protein 2 isoform 2 [Pan
troglodytes]
Length = 717
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>gi|45935393|ref|NP_079215.2| epithelial splicing regulatory protein 2 [Homo sapiens]
gi|20988380|gb|AAH30146.1| Epithelial splicing regulatory protein 2 [Homo sapiens]
gi|119603622|gb|EAW83216.1| RNA binding motif protein 35B, isoform CRA_c [Homo sapiens]
Length = 717
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>gi|426382629|ref|XP_004057906.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Gorilla gorilla gorilla]
Length = 717
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>gi|344290717|ref|XP_003417084.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 2-like [Loxodonta africana]
Length = 717
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGIRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + D+ ILRLRGLPFSAG D++ F D +
Sbjct: 331 AGGTSLEVVRFLSREDQV--------ILRLRGLPFSAGPADVLAFLGPECPVTGGADGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRSXQGMLGKRYIELFRSTAAEVQQILNR 437
Score = 86.7 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+ + +G+RY+E+FRS E + + A+
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRSXQGMLGKRYIELFRSTAAEVQQILNRYAS 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SSLLPTLTAPLLPIPFPLVAGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 63.2 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VIRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGIRYIEVYKATGEE 326
>gi|72092573|ref|XP_792820.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Strongylocentrotus purpuratus]
Length = 752
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 18/154 (11%)
Query: 44 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDS 103
Q D ALQR++ N+G+RYVEVF++ E+ + A G S ++ A+ DEG
Sbjct: 273 QRDMALQRHKHNLGKRYVEVFKATGDEFIRVAA-------GTSKEATLFLAR--DEGHI- 322
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAE 160
I+R+RGLPF+A + D++DFF + E+ I +G+ TG+AFV FA+ +
Sbjct: 323 -----IVRMRGLPFTASEKDVVDFFGPEIPVAGGEEGILFVKQKNGKMTGDAFVLFASED 377
Query: 161 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
A++K R LG+RYIE+F S+ E+ + LSR
Sbjct: 378 AVSKALSKHREYLGNRYIEIFRSTTAEVQQVLSR 411
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 24/198 (12%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA------ 74
+LFV KN K TG+AF + V AL ++R+ +G RY+E+FRS E +
Sbjct: 355 ILFVKQKNGKMTGDAFVLFASEDAVSKALSKHREYLGNRYIEIFRSTTAEVQQVLSRVQS 414
Query: 75 --IANEVSDVRGGSPHRSIP--------RAKSHDEGKDSAVHTGI----LRLRGLPFSAG 120
I ++ + P IP + + G+ +R+RGLP++A
Sbjct: 415 EPIMADIPQQQVMPPMIPIPIHAMPPHHPHQPPPPPHPHFITAGVVRDCIRMRGLPYNAS 474
Query: 121 KDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT-LGSRY 177
+DIM F + + +H+ +N G+P GEAF++ +AE + A M + RY
Sbjct: 475 IEDIMLFLGEAAQFIRPHGVHMVLNLQGKPNGEAFIQMTSAERACLAAQTCHMKYMRERY 534
Query: 178 IELFPSSHEEMDEALSRG 195
+E+F S EEM L+ G
Sbjct: 535 VEVFQCSGEEMQMVLTSG 552
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
DS ++ RGLP+ A D+ FFK ++ + + +N+ GR GE V F ++E
Sbjct: 214 DSIPDDTAVKARGLPWQASDRDVFRFFKGLNIARGGVALCLNTHGRRNGEVMVHFESSEQ 273
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEE 187
A+ + + LG RY+E+F ++ +E
Sbjct: 274 RDMALQRHKHNLGKRYVEVFKATGDE 299
Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGL A D+ FF+ + + +S+ ++ N GEA V F+ ++D +
Sbjct: 685 MIRLRGLHTGATAQDVAKFFQGYGVPPESVQVSQN------GEAVVPFS-SQDIAVRALQ 737
Query: 169 DRMTLGSRYIELF 181
DR S +ELF
Sbjct: 738 DRQRQFSGKMELF 750
>gi|397487054|ref|XP_003814628.1| PREDICTED: epithelial splicing regulatory protein 2, partial [Pan
paniscus]
Length = 713
Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 275 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 326
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 327 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLL 378
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 379 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 433
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 377 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 436
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 437 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 490
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 491 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 550
Query: 195 G 195
G
Sbjct: 551 G 551
Score = 62.8 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 244 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 303
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 304 HKHHMGVRYIEVYKATGEE 322
>gi|432960846|ref|XP_004086494.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 370
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 8/181 (4%)
Query: 17 MDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+D+V+ + + +GEAF ALQ++R+ MG RYVEVF S+ E
Sbjct: 192 LDVVENGITMVTDGRGRNSGEAFVQFTSQEVAGKALQKHRELMGHRYVEVFPSRSSEIRS 251
Query: 74 AIANEVS-DVRGGSPHRSIPRAKSHD--EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
S + SP P + H + S ++ + +RGLPF A +DI+ FF
Sbjct: 252 TWKRRSSLPPQSASPPAGRPASAPHRAVSPQSSEANSHFIHMRGLPFQASGEDIVKFFSP 311
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+V+S+ I I DGR +GEA V F+ D+ AAM++DR +G RYIELF +S + D+
Sbjct: 312 YVVSK--IMIECRPDGRTSGEADVYFSCHRDAVAAMSRDRTNMGHRYIELFLNSAPDSDQ 369
Query: 191 A 191
Sbjct: 370 C 370
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 10 CTIHHQLMDIVDV----------LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRR 59
CT+H L D L + + + +G AF + + V AL+++RQ +G R
Sbjct: 83 CTVHELLHFFSDCRIRDGERGVHLTLDRLGRPSGRAFIEMEHEEDVSKALEKHRQYLGPR 142
Query: 60 YVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSA 119
YVEV + N SD H + P A G++ LRGLPFS
Sbjct: 143 YVEV---------SEVTN--SDAETILQHVAPP-----------AAEDGVVMLRGLPFSC 180
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
+DDI+ FF + E+ I + + GR +GEAFV+F + E + A+ K R +G RY+E
Sbjct: 181 TQDDILLFFSGLDVVENGITMVTDGRGRNSGEAFVQFTSQEVAGKALQKHRELMGHRYVE 240
Query: 180 LFPSSHEEMDEALSR 194
+FPS E+ R
Sbjct: 241 VFPSRSSEIRSTWKR 255
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 70 EYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
E +++ + S + GG + P ++D+ + V I+++RGLP+S +++ FF
Sbjct: 37 EETQSVEEKKSLLEGGD-QEAYPPLPAYDQQESREVF--IVQVRGLPWSCTVHELLHFFS 93
Query: 130 DFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180
D + E +H+T++ GRP+G AF+E + ED A+ K R LG RY+E+
Sbjct: 94 DCRIRDGERGVHLTLDRLGRPSGRAFIEMEHEEDVSKALEKHRQYLGPRYVEV 146
>gi|402908823|ref|XP_003917134.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Papio anubis]
Length = 725
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 287 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 338
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 339 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLL 390
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 391 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 445
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 389 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 448
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 449 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 502
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + A + + + RY+E+ P S EEM L
Sbjct: 503 HGVHMVLNQQGRPSGDAFIQMTSAERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 562
Query: 195 G 195
G
Sbjct: 563 G 563
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 256 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 315
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 316 HKHHMGVRYIEVYKATGEE 334
>gi|53127638|emb|CAG31148.1| hypothetical protein RCJMB04_2m14 [Gallus gallus]
Length = 492
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I L + + F++ + + +GEAF L V AL+++R+ MG RYVEVF+S
Sbjct: 64 CKI---LNGALGIRFIYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNN 120
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 121 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 161
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 162 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 221
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI--TMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 102 KKDRETMGHRYVEVFKSNNVEMDWVL 127
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
RG S HR + VH +RGLP+ A ++DI +FF L+ +HI +
Sbjct: 292 RGMSDHRYGDGTSTFQSTTGHCVH-----MRGLPYRATENDIYNFFSP--LNPVRVHIEI 344
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 345 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 386
>gi|45383173|ref|NP_989827.1| heterogeneous nuclear ribonucleoprotein H [Gallus gallus]
gi|33521618|gb|AAQ20009.1| heterogeneous nuclear ribonucleoprotein H1-like protein [Gallus
gallus]
Length = 519
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I L + + F++ + + +GEAF L V AL+++R+ MG RYVEVF+S
Sbjct: 84 CKI---LNGALGIRFIYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNN 140
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 141 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 181
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 182 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 241
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI--TMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 121
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 122 KKDRETMGHRYVEVFKSNNVEMDWVL 147
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 340 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 397
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 398 DKANMQHRYVELFLNS 413
>gi|156375031|ref|XP_001629886.1| predicted protein [Nematostella vectensis]
gi|156216896|gb|EDO37823.1| predicted protein [Nematostella vectensis]
Length = 354
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 20/161 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GE F V+ AL+ N ++MG+RY+EVFRSK +E I R G P
Sbjct: 49 SGECFVQFVSEKDVEKALEMNNEHMGKRYIEVFRSKAEEMEWVIK------RMGPPSDRD 102
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
A +++LRGLP+ K++I FF + + I IT++ +G+ TGE
Sbjct: 103 QEA--------------VVKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGE 148
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
FVEFA+ E + AM K + +G RYIE+F SS ++ L
Sbjct: 149 GFVEFASPEIAGQAMQKHKEKIGHRYIEIFKSSKSDIKYVL 189
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
++R RGLP+SA +DI +FFKD + ++ +H T DGRP+GE FV+F + +D + A
Sbjct: 6 VVRARGLPWSATPEDIQNFFKDCNIVGGPQNGVHFTFGIDGRPSGECFVQFVSEKDVEKA 65
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + +G RYIE+F S EEM+ + R
Sbjct: 66 LEMNNEHMGKRYIEVFRSKAEEMEWVIKR 94
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 31/190 (16%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY-YKAIANEVS 80
+ + + K TGE F P A+Q++++ +G RY+E+F+S + + Y +
Sbjct: 136 TITLDEEGKTTGEGFVEFASPEIAGQAMQKHKEKIGHRYIEIFKSSKSDIKYVLKPKPLM 195
Query: 81 DVRGGSPHRSIPRAKSHDEGK--------------------------DSAVHTGILRLRG 114
R G R G+ S HT + +RG
Sbjct: 196 STRPGPYDRMGGPFGGPRFGRGGGDQFERRGGFGGGRSGGTGGFSGVSSTGHT--VAMRG 253
Query: 115 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 174
LPF A + D+ FF L+ + + DGR GE V+FA D+ AAM+KDR T+G
Sbjct: 254 LPFGAKETDVKQFF--MPLNPVEVRLRWGPDGRCCGEGEVDFATHADATAAMSKDRQTMG 311
Query: 175 SRYIELFPSS 184
RYIELF +S
Sbjct: 312 HRYIELFLNS 321
>gi|297284292|ref|XP_002802581.1| PREDICTED: epithelial splicing regulatory protein 2-like isoform 2
[Macaca mulatta]
Length = 725
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 287 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 338
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 339 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLL 390
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 391 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 445
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 389 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 448
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 449 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 502
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + A + + + RY+E+ P S EEM L
Sbjct: 503 HGVHMVLNQQGRPSGDAFIQMTSAERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 562
Query: 195 G 195
G
Sbjct: 563 G 563
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 256 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 315
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 316 HKHHMGVRYIEVYKATGEE 334
>gi|402908821|ref|XP_003917133.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Papio anubis]
Length = 715
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 277 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 328
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 329 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLL 380
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 381 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 435
Score = 89.7 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 379 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 438
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 439 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 492
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + A + + + RY+E+ P S EEM L
Sbjct: 493 HGVHMVLNQQGRPSGDAFIQMTSAERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 552
Query: 195 G 195
G
Sbjct: 553 G 553
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 246 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 305
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 306 HKHHMGVRYIEVYKATGEE 324
>gi|449474971|ref|XP_002195792.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Taeniopygia
guttata]
Length = 419
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I L + + F++ + + +GEAF L V AL+++R+ MG RYVEVF+S
Sbjct: 15 CKI---LNGALGIRFIYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNN 71
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 72 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 112
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 113 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 172
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+KD
Sbjct: 272 VHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 329
Query: 170 RMTLGSRYIELFPSS 184
+ + RY+ELF +S
Sbjct: 330 KANMQHRYVELFLNS 344
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
I +GRP+GEAF E + ED K A+ KDR T+G RY+E+F S++ EMD L
Sbjct: 24 IRFIYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNNVEMDWVL 78
>gi|326928641|ref|XP_003210484.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Meleagris gallopavo]
Length = 477
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I L + + F++ + + +GEAF L V AL+++R+ MG RYVEVF+S
Sbjct: 49 CKI---LNGALGIRFIYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNN 105
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 106 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 146
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 147 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 206
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI--TMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 27 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 86
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 87 KKDRETMGHRYVEVFKSNNVEMDWVL 112
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
RG S HR + VH +RGLP+ A ++DI +FF L+ +HI +
Sbjct: 277 RGMSDHRYGDGTSTFQSTTGHCVH-----MRGLPYRATENDIYNFFSP--LNPVRVHIEI 329
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 330 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 371
>gi|109128999|ref|XP_001098015.1| PREDICTED: epithelial splicing regulatory protein 2-like isoform 1
[Macaca mulatta]
Length = 715
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 277 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 328
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 329 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLL 380
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 381 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 435
Score = 89.7 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 379 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 438
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 439 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 492
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + A + + + RY+E+ P S EEM L
Sbjct: 493 HGVHMVLNQQGRPSGDAFIQMTSAERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 552
Query: 195 G 195
G
Sbjct: 553 G 553
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 246 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 305
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 306 HKHHMGVRYIEVYKATGEE 324
>gi|402911169|ref|XP_003918213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like, partial
[Papio anubis]
Length = 256
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + SP D+A + G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN----SP--------------DTA-NDGFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
>gi|440905418|gb|ELR55795.1| Epithelial splicing regulatory protein 2, partial [Bos grunniens
mutus]
Length = 759
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 24/177 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 314 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 365
Query: 83 RGGSPHRSIP------RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVL 133
GG H P R S ++ ILRLRGLPFSAG D++ F
Sbjct: 366 AGGDSHAPPPPPLEVARFLSRED-------QVILRLRGLPFSAGPADVLGFLGPECPVTG 418
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
D + + DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ +
Sbjct: 419 GADGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQ 475
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + A+ S
Sbjct: 423 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQPAASFPS 482
Query: 81 D---VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 483 SPLLPTLTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAVDIRP 536
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 537 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMG 596
Query: 195 G 195
G
Sbjct: 597 G 597
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 283 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 342
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 343 HKHHMGVRYIEVYKATGEE 361
>gi|355756893|gb|EHH60501.1| hypothetical protein EGM_11873, partial [Macaca fascicularis]
Length = 635
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 197 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 248
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 249 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLL 300
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 301 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 355
Score = 89.7 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 299 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 358
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 359 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 412
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + A + + + RY+E+ P S EEM L
Sbjct: 413 HGVHMVLNQQGRPSGDAFIQMTSAERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 472
Query: 195 G 195
G
Sbjct: 473 G 473
Score = 62.8 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 166 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 225
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 226 HKHHMGVRYIEVYKATGEE 244
>gi|355710319|gb|EHH31783.1| hypothetical protein EGK_12921, partial [Macaca mulatta]
Length = 688
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 250 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 301
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 302 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLL 353
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 354 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 408
Score = 89.7 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 352 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 411
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 412 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 465
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + A + + + RY+E+ P S EEM L
Sbjct: 466 HGVHMVLNQQGRPSGDAFIQMTSAERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 525
Query: 195 G 195
G
Sbjct: 526 G 526
Score = 62.8 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 219 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 278
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 279 HKHHMGVRYIEVYKATGEE 297
>gi|422294428|gb|EKU21728.1| rna binding protein, partial [Nannochloropsis gaditana CCMP526]
Length = 572
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 18/165 (10%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ FVH+ + + +GEAF VL V AL +++Q MG R++++F S E + + +
Sbjct: 315 IFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVG--AA 372
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
V G+ KD + G+L++RGLPF D+ +F + ++ + I
Sbjct: 373 AVTLGA--------------KDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFI 418
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAM-AKDRMTLGSRYIELFPSS 184
TM +DGRPTGEA+V F ED+ AA A ++ T+ +R+I+L+ +S
Sbjct: 419 TMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLAS 463
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 16/171 (9%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEA +G + + AL+ +G+R+V++ S +E ++A S+ +P +
Sbjct: 131 SGEALVRVGSAEEEETALKLKVGRLGKRFVDI-GSTTEEAFEATP-ATSEEAMNAPATVV 188
Query: 92 P-RAKSHDEGKD-------------SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS 137
P A + E D S+ G++R+RGLP+SA + DI+ FF F ++E
Sbjct: 189 PDAATATGEAGDGTAGEASSLTVPESSTPQGVVRMRGLPYSATEKDILAFFSGFGVAEGG 248
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+H+ + GR +G+A+V F +++ A+ D+ +G R+I+LF SS EM
Sbjct: 249 VHMHYDHMGRASGQAYVVFETVPEAQHALKLDKEKIGERWIDLFLSSKPEM 299
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 25/162 (15%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANE--VSDVRG 84
+ + TGEA+ + P A + N+Q M R+++++ + + + Y + + V G
Sbjct: 423 DGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHG 482
Query: 85 GSP-HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 143
G P + + P RLRG+P + ++++ FF L ++I +
Sbjct: 483 GCPVYANTPMT--------------CARLRGVPSTVTEEELFRFFAG--LQVIGLYICRD 526
Query: 144 SDGRPTGEAFVEFANAEDSKAAMAKDR-----MTLGSRYIEL 180
S GR TGEA+ EF + +D + AM+++R +G R IE+
Sbjct: 527 SSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEV 568
Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
FF + + I DGR +GEAFV + E + A+ +D+ +GSR++++F S
Sbjct: 304 FFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPG 363
Query: 187 EM 188
E+
Sbjct: 364 EL 365
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLS---EDSIHITMNSDGRPTGEAFVEFANAE 160
A T ILRL GLP+ D+ +F K +S + + I + D +GEA V +AE
Sbjct: 85 APGTLILRLSGLPWKCSVADVQNFLKHIGVSTRPDPAADIKILDDS--SGEALVRVGSAE 142
Query: 161 DSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
+ + A+ LG R++++ ++ E +
Sbjct: 143 EEETALKLKVGRLGKRFVDIGSTTEEAFE 171
>gi|431892769|gb|ELK03202.1| Heterogeneous nuclear ribonucleoprotein H [Pteropus alecto]
Length = 435
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
RG S HR + VH +RGLP+ A ++DI +FF L+ +HI +
Sbjct: 262 RGMSDHRYGDGGSTFQSTTGHCVH-----MRGLPYRATENDIYNFFSP--LNPVRVHIEI 314
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 315 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 356
>gi|422294318|gb|EKU21618.1| rna binding protein [Nannochloropsis gaditana CCMP526]
Length = 302
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 18/165 (10%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ FVH+ + + +GEAF VL V AL +++Q MG R++++F S E + +
Sbjct: 17 IFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAV 76
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ KD + G+L++RGLPF D+ +F + ++ + I
Sbjct: 77 TL----------------GAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFI 120
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAM-AKDRMTLGSRYIELFPSS 184
TM +DGRPTGEA+V F ED+ AA A ++ T+ +R+I+L+ +S
Sbjct: 121 TMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLAS 165
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANE--VSDVRG 84
+ + TGEA+ + P A + N+Q M R+++++ + + + Y + + V G
Sbjct: 125 DGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHG 184
Query: 85 GSP-HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 143
G P + + P + RLRG+P + ++++ FF L ++I +
Sbjct: 185 GCPVYANTPMTCA--------------RLRGVPSTVTEEELFRFFAG--LQVIGLYICRD 228
Query: 144 SDGRPTGEAFVEFANAEDSKAAMAK 168
S GR TGEA+ EF + +D + AM++
Sbjct: 229 SSGRATGEAYAEFGSLDDCQQAMSR 253
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 123 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182
D+ FF + + I DGR +GEAFV + E + A+ +D+ +GSR++++F
Sbjct: 2 DLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFE 61
Query: 183 SSHEEM 188
S E+
Sbjct: 62 SHPGEL 67
>gi|395853861|ref|XP_003799417.1| PREDICTED: epithelial splicing regulatory protein 2 [Otolemur
garnettii]
Length = 715
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 277 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGIRYIEVYKATGEEFVK--------I 328
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 329 AGGTS-IEVARFLSRED-------QVILRLRGLPFSAGPPDVLGFLGPECPVTGGAEGLL 380
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIE+F S+ E+ + L+R
Sbjct: 381 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIEIFRSTAAEVQQVLNR 435
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 379 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIEIFRSTAAEVQQVLNRYAS 438
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 439 SPLLPTLTAPLLPIPFPLAAGTGRDC------VRLRGLPYTATIEDILSFLGEAAVDIRP 492
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 493 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLIG 552
Query: 195 G 195
G
Sbjct: 553 G 553
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 246 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 305
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 306 HKHHMGIRYIEVYKATGEE 324
>gi|194219511|ref|XP_001497574.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Equus
caballus]
Length = 456
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 41 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 97
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 98 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 138
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 139 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 198
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 285 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 342
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 343 ATHEDAVAAMSKDKANMQHRYVELFLNS 370
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 127 FFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
FF D + + I +GRP+GEAFVE + ++ K A+ KDR T+G RY+E+F S+
Sbjct: 37 FFPDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSN 96
Query: 185 HEEMDEAL 192
+ EMD L
Sbjct: 97 NVEMDWVL 104
>gi|242007190|ref|XP_002424425.1| Heterogeneous nuclear ribonucleoprotein F, putative [Pediculus
humanus corporis]
gi|212507825|gb|EEB11687.1| Heterogeneous nuclear ribonucleoprotein F, putative [Pediculus
humanus corporis]
Length = 412
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 19/166 (11%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
+ + + + +GEA+ + ++ AL+++R MG RY+EVF+SKR E I S++
Sbjct: 43 IIMTREGRPSGEAYVEMETDQDIEEALKKDRDYMGTRYMEVFKSKRSEMDWVIKRSGSNL 102
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
++A+ G +RLRGLPF K++I FF + + I + M
Sbjct: 103 -------------------ETALDDGCVRLRGLPFGCSKEEIAQFFTGLEIVPNGITLPM 143
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+S GR TGEA+V+F N + ++ A+ K + + RYIE+F SS E+
Sbjct: 144 DSRGRSTGEAYVQFKNKDIAEKALLKHKEKIAHRYIEIFRSSLGEI 189
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S ++I+ FF + + ++ +HI M +GRP+GEA+VE +D + A+
Sbjct: 10 VIKMRGLPWSTTDEEILKFFNNCKVKNGKEGVHIIMTREGRPSGEAYVEMETDQDIEEAL 69
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
KDR +G+RY+E+F S EMD + R
Sbjct: 70 KKDRDYMGTRYMEVFKSKRSEMDWVIKR 97
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
S+ H + +RGLPF A K D+ DFF+ + SI + DGRP+GEA VEF +D+
Sbjct: 299 SSAHC--IHMRGLPFRATKQDVADFFRPVIPL--SIDLLTEDDGRPSGEADVEFRTHDDA 354
Query: 163 KAAMAKDRMTLGSRYIELFPSS 184
AM+K++ + RYIELF +S
Sbjct: 355 VLAMSKNKNHMQHRYIELFLNS 376
>gi|380792639|gb|AFE68195.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 269
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + I +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAPGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
>gi|120538378|gb|AAI29088.1| Hnrph1 protein [Rattus norvegicus]
Length = 429
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|10946928|ref|NP_067485.1| heterogeneous nuclear ribonucleoprotein H [Mus musculus]
gi|46396669|sp|O35737.3|HNRH1_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein H, N-terminally processed
gi|2253041|emb|CAA74583.1| heterogeneous nuclear ribonucleoprotein H [Mus musculus]
gi|33604202|gb|AAH56224.1| Heterogeneous nuclear ribonucleoprotein H1 [Mus musculus]
gi|37589940|gb|AAH42187.2| Heterogeneous nuclear ribonucleoprotein H1 [Mus musculus]
gi|74149585|dbj|BAE36421.1| unnamed protein product [Mus musculus]
gi|148701754|gb|EDL33701.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_d [Mus
musculus]
gi|149052456|gb|EDM04273.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_b [Rattus
norvegicus]
Length = 449
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|397477061|ref|XP_003809903.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Pan paniscus]
gi|426351280|ref|XP_004043181.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Gorilla
gorilla gorilla]
Length = 452
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|5031753|ref|NP_005511.1| heterogeneous nuclear ribonucleoprotein H [Homo sapiens]
gi|300794637|ref|NP_001180163.1| heterogeneous nuclear ribonucleoprotein H [Bos taurus]
gi|381342476|ref|NP_001244222.1| heterogeneous nuclear ribonucleoprotein H [Homo sapiens]
gi|73970381|ref|XP_857122.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 19
[Canis lupus familiaris]
gi|109080078|ref|XP_001099955.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 7
[Macaca mulatta]
gi|114603795|ref|XP_001150460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2 [Pan
troglodytes]
gi|291410134|ref|XP_002721348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H1-like
[Oryctolagus cuniculus]
gi|301771512|ref|XP_002921169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Ailuropoda melanoleuca]
gi|311249564|ref|XP_003123691.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Sus scrofa]
gi|348551747|ref|XP_003461691.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Cavia
porcellus]
gi|403307005|ref|XP_003944005.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Saimiri boliviensis boliviensis]
gi|403307007|ref|XP_003944006.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Saimiri boliviensis boliviensis]
gi|410947937|ref|XP_003980698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Felis catus]
gi|426228702|ref|XP_004008435.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Ovis aries]
gi|1710632|sp|P31943.4|HNRH1_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein H, N-terminally processed
gi|347314|gb|AAA91346.1| hnRNP H [Homo sapiens]
gi|12655001|gb|AAH01348.1| HNRPH1 protein [Homo sapiens]
gi|119574192|gb|EAW53807.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_a [Homo
sapiens]
gi|119574193|gb|EAW53808.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_a [Homo
sapiens]
gi|193784895|dbj|BAG54048.1| unnamed protein product [Homo sapiens]
gi|296486243|tpg|DAA28356.1| TPA: heterogeneous nuclear ribonucleoprotein H1 (H) [Bos taurus]
Length = 449
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|148701752|gb|EDL33699.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_b [Mus
musculus]
Length = 485
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 47 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 103
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 104 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 144
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 145 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 204
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 25 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 84
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 85 KKDRETMGHRYVEVFKSNNVEMDWVL 110
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 303 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 360
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 361 DKANMQHRYVELFLNS 376
>gi|26353116|dbj|BAC40188.1| unnamed protein product [Mus musculus]
Length = 472
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|383417967|gb|AFH32197.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|410224062|gb|JAA09250.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
Length = 449
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + I +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|344246789|gb|EGW02893.1| Heterogeneous nuclear ribonucleoprotein H [Cricetulus griseus]
Length = 415
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 7 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 63
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 64 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 104
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 105 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 164
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 263 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 320
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 321 DKANMQHRYVELFLNS 336
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 127 FFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
FF D + + I +GRP+GEAFVE + ++ K A+ KDR T+G RY+E+F S+
Sbjct: 3 FFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSN 62
Query: 185 HEEMDEAL 192
+ EMD L
Sbjct: 63 NVEMDWVL 70
>gi|440897190|gb|ELR48939.1| Heterogeneous nuclear ribonucleoprotein H [Bos grunniens mutus]
Length = 472
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|390459519|ref|XP_002744505.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Callithrix
jacchus]
Length = 472
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|395853398|ref|XP_003799198.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Otolemur garnettii]
gi|395853400|ref|XP_003799199.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Otolemur garnettii]
gi|395853402|ref|XP_003799200.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 3
[Otolemur garnettii]
Length = 449
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|126290596|ref|XP_001369385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Monodelphis
domestica]
Length = 449
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + I +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF + + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSECKIQNGASGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
>gi|441595654|ref|XP_003279600.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Nomascus leucogenys]
Length = 452
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|402873628|ref|XP_003919688.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H [Papio anubis]
Length = 472
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|261859020|dbj|BAI46032.1| heterogeneous nuclear ribonucleoprotein H1 [synthetic construct]
Length = 472
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|441595657|ref|XP_004087258.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Nomascus leucogenys]
Length = 472
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|354486518|ref|XP_003505427.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Cricetulus
griseus]
Length = 447
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 9 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 65
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 66 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 106
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 107 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 166
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 265 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 322
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 323 DKANMQHRYVELFLNS 338
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 127 FFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
FF D + + I +GRP+GEAFVE + ++ K A+ KDR T+G RY+E+F S+
Sbjct: 5 FFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSN 64
Query: 185 HEEMDEAL 192
+ EMD L
Sbjct: 65 NVEMDWVL 72
>gi|395504896|ref|XP_003756782.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Sarcophilus
harrisii]
Length = 471
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 42 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGP 101
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + I +
Sbjct: 102 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITL 142
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 143 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 190
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 289 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 346
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 347 DKANMQHRYVELFLNS 362
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
I +GRP+GEAFVE + ++ K A+ KDR T+G RY+E+F S++ EMD L
Sbjct: 41 GIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVL 96
>gi|351714509|gb|EHB17428.1| Heterogeneous nuclear ribonucleoprotein H, partial [Heterocephalus
glaber]
Length = 444
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 6 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 62
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 63 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 103
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 104 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 163
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 262 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 319
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 320 DKANMQHRYVELFLNS 335
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 127 FFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
FF D + + I +GRP+GEAFVE + ++ K A+ KDR T+G RY+E+F S+
Sbjct: 2 FFPDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSN 61
Query: 185 HEEMDEAL 192
+ EMD L
Sbjct: 62 NVEMDWVL 69
>gi|119574194|gb|EAW53809.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_b [Homo
sapiens]
Length = 393
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + I +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
>gi|281351805|gb|EFB27389.1| hypothetical protein PANDA_010030 [Ailuropoda melanoleuca]
Length = 472
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|48145673|emb|CAG33059.1| HNRPH1 [Homo sapiens]
Length = 449
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSGAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|148688440|gb|EDL20387.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_b [Mus
musculus]
Length = 460
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
V F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 54 VRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 113
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 114 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 154
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 155 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 202
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 23 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 82
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 83 KKDRETMGHRYVEVFKSNSVEMDWVL 108
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 289 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 346
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 347 ATHEDAVAAMAKDKANMQHRYVELFLNS 374
>gi|288806582|ref|NP_001165773.1| G-rich RNA sequence binding factor 1 [Xenopus (Silurana)
tropicalis]
gi|189442327|gb|AAI67701.1| Unknown (protein for MGC:186196) [Xenopus (Silurana) tropicalis]
Length = 348
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 85
+++ K G+A V A++++++ MG+RYVEVF ++E +++ N +
Sbjct: 39 NRDGKPRGDAVIEFESAEDVQKAVEQHKKYMGQRYVEVFEMNQKEA-ESLLNRMHSAL-- 95
Query: 86 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 145
SP R + S S G++RLRGLP+S + DI+ FF ++++ I ++
Sbjct: 96 SPTRPSSMSLSPQSSMASPPSDGVVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQR 155
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
GR +GEAFV+F + E + A+ K + +GSRYIE+FPS E+ A
Sbjct: 156 GRKSGEAFVQFLSQEHADQALLKHKQEIGSRYIEIFPSRRNEIQTA 201
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I+R+RGLP+S DD+++FF D + + +H N DG+P G+A +EF +AED + A+
Sbjct: 3 IVRVRGLPWSCTADDVLNFFGDSNVRNGTEGVHFIFNRDGKPRGDAVIEFESAEDVQKAV 62
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + +G RY+E+F + +E + L+R
Sbjct: 63 EQHKKYMGQRYVEVFEMNQKEAESLLNR 90
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 93/208 (44%), Gaps = 39/208 (18%)
Query: 17 MDIVD--VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DI D + FV + + +GEAF D AL +++Q +G RY+E+F S+R E
Sbjct: 141 LDIADEGITFVLDQRGRKSGEAFVQFLSQEHADQALLKHKQEIGSRYIEIFPSRRNEIQT 200
Query: 74 A-------------------------IANEVSDVRGGSPHRSIPR-------AKSHDEGK 101
A I N D+ P AKS D +
Sbjct: 201 ARFPFRRRKGVTFAPTIKDLYDPDNCINNTSKDLLSDVPENGHINDYVKEMSAKSMDV-Q 259
Query: 102 DSAVHTGI--LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
D V + + + +RGLPF A DI +FF + + SI + ++ G TGEA V F
Sbjct: 260 DFTVMSPVHDIHIRGLPFHASGQDIANFFHPIMPLKISIEYSADAGG-ATGEAVVRFLTH 318
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEE 187
ED+ AAMAK+R Y+EL+ +S E
Sbjct: 319 EDAVAAMAKNRCHTQHGYLELYLNSSPE 346
>gi|327265516|ref|XP_003217554.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Anolis
carolinensis]
Length = 490
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
V F++ + + +GEAF L V AL+++R+ MG RYVEVF+S E + +
Sbjct: 73 VRFIYTREGRPSGEAFVELETEEDVKSALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGP 132
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + I +
Sbjct: 133 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITL 173
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 174 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 221
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF + + S + +GRP+GEAFVE ED K+A+
Sbjct: 42 VVKVRGLPWSCSADEVQRFFSECKILNGSSGVRFIYTREGRPSGEAFVELETEEDVKSAL 101
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 102 KKDRETMGHRYVEVFKSNNVEMDWVL 127
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 7/102 (6%)
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
RG S HR + + VH +RGLP+ A ++DI +FF L+ +HI +
Sbjct: 292 RGISDHRYGDGSSTFQSTTGHCVH-----MRGLPYRATENDIYNFFSP--LNPVRVHIEI 344
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 345 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 386
>gi|347968776|ref|XP_312018.5| AGAP002892-PA [Anopheles gambiae str. PEST]
gi|333467847|gb|EAA08189.6| AGAP002892-PA [Anopheles gambiae str. PEST]
Length = 589
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 33/186 (17%)
Query: 20 VDVLFVH-----KNNKFTGEAFCVLGYPLQVDF--ALQRNRQNMGRRYVEVFRSKRQEYY 72
V++L VH + + TGEA+ + P Q D A RN+Q +G RY+E F + +++
Sbjct: 77 VNILHVHICFHPQTKRQTGEAYIRV--PTQADRNKAFSRNKQTIGHRYIEFFNATEEQFE 134
Query: 73 KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
A+ E+ + G P ++++RGLP+++ KDD+ FF+
Sbjct: 135 MALQ-EMDEGESGGP---------------------VVKMRGLPWTSTKDDVKAFFQGLT 172
Query: 133 LSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ + I + +++ GR +GEA VEFA D++ AM K + +G+RYIELF S+ EM
Sbjct: 173 IKNGYNGILLLLDNLGRASGEAIVEFATEADAETAMGKHKEKIGNRYIELFRSNTGEMRR 232
Query: 191 ALSRGR 196
A R R
Sbjct: 233 AEKRMR 238
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RG+PFS + D+ DFF L + MNS RP+GE F E++ AM KD
Sbjct: 483 VHMRGMPFSCDEQDMYDFF--MPLRPVKCVVQMNSRKRPSGEGDAYFETKEEAIKAMRKD 540
Query: 170 RMTLGSRYIELF 181
+ +GSRYIELF
Sbjct: 541 KEKMGSRYIELF 552
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG-RPTGEAFVEFANAEDSKAAMAK 168
+RLRGLP+S +D+I F + +HI + R TGEA++ D A ++
Sbjct: 56 VRLRGLPWSITEDEIRSFLHGVNILH--VHICFHPQTKRQTGEAYIRVPTQADRNKAFSR 113
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
++ T+G RYIE F ++ E+ + AL
Sbjct: 114 NKQTIGHRYIEFFNATEEQFEMAL 137
>gi|344265353|ref|XP_003404749.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Loxodonta
africana]
Length = 449
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDDVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++ FF D + + I +GRP+GEAFVE + +D K A+
Sbjct: 12 VVKVRGLPWSCSAEEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|307203918|gb|EFN82825.1| Heterogeneous nuclear ribonucleoprotein H2 [Harpegnathos saltator]
Length = 388
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 19/162 (11%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEA+ + P ++ A +R+R +MG RY+EVF++KR E + ++
Sbjct: 40 SGEAYVEMDTPEDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVVKRSGLNL--------- 90
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
++A+ G +RLRGLPF K++I FF + + I + + GR TGE
Sbjct: 91 ----------ENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGE 140
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
A+V+F N + ++ A+ K + +G RYIE+F SS E+ ++
Sbjct: 141 AYVQFVNKDVAERALQKHKEKIGHRYIEIFRSSLSEVRASIG 182
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+RGLP+S D+I+ FF D +S ++ +H+TM+ +GRP+GEA+VE ED + A +D
Sbjct: 1 MRGLPWSTTVDEIIKFFADCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKACKRD 60
Query: 170 RMTLGSRYIELFPSSHEEMDEALSR 194
R +G RYIE+F + EM+ + R
Sbjct: 61 RDHMGHRYIEVFKAKRGEMEWVVKR 85
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 93 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 152
R G +S VH+ + +RGLPF A + DI DFF+ + ++ I + + GRP+GEA
Sbjct: 256 RGSGDSWGGNSGVHS--IHMRGLPFKATEQDIADFFRP--IEPVNVRIILENGGRPSGEA 311
Query: 153 FVEFANAEDSKAAMAKDRMTLGSRYIELF 181
VEFA E++ AM KD+ + RYIELF
Sbjct: 312 DVEFATHEEAVKAMCKDKSHMLHRYIELF 340
>gi|355694919|gb|AER99830.1| heteroproteinous nuclear ribonucleoprotein F [Mustela putorius
furo]
Length = 342
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 19/154 (12%)
Query: 35 AFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRA 94
AF L V AL+++R++MG RY+EVF+S R E + + S P
Sbjct: 1 AFVELESEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP-- 46
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
S D D G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV
Sbjct: 47 NSADTAND-----GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFV 101
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 102 QFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 135
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+KD
Sbjct: 235 VHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 292
Query: 170 RMTLGSRYIELFPSS 184
R + RYIELF +S
Sbjct: 293 RANMQHRYIELFLNS 307
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
AFVE + +D K A+ KDR ++G RYIE+F S EMD L
Sbjct: 1 AFVELESEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL 41
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L V K TGEAF + AL ++++ +G RY+EVF+S ++E
Sbjct: 86 TLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 134
>gi|321466664|gb|EFX77658.1| hypothetical protein DAPPUDRAFT_198258 [Daphnia pulex]
Length = 397
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
+ + TGE + L V+ AL ++ +++G RY+EVFRSKR E + R G
Sbjct: 45 REGRPTGEGYLELSSEEDVERALTKHNEHLGPRYIEVFRSKRSEMEWMVK------RSGP 98
Query: 87 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
P+ + P S+ +RLRGLPF K++I FF + + I + + G
Sbjct: 99 PNAAAP----------SSDDDCFVRLRGLPFGCSKEEIAQFFTGLEIVPNGITLPTDYSG 148
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
R TGEA+++FA + ++ A+ K + +G RYIE+F SS E AL+
Sbjct: 149 RSTGEAYIQFATSALAERALEKHKEKIGHRYIEIFRSSLSEARAALA 195
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++RLRGLP++ DDI+ FF+D V IH+T +GRPTGE ++E ++ ED + A+
Sbjct: 8 VVRLRGLPWAVTDDDILKFFEDSNIVGGAAGIHMTYTREGRPTGEGYLELSSEEDVERAL 67
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
K LG RYIE+F S EM+ + R
Sbjct: 68 TKHNEHLGPRYIEVFRSKRSEMEWMVKR 95
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
DEG +H +RGLPF A +DDI +FF L +IHI GR +GEA VEFA
Sbjct: 302 DEGSGHRIH-----MRGLPFRASEDDIAEFFHP--LHPVAIHIGYEQ-GRASGEADVEFA 353
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AM++D+ + RYIELF +S
Sbjct: 354 THEDAVRAMSRDKCNMQHRYIELFLNS 380
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
+ + TGEA+ + AL+++++ +G RY+E+FRS E A+A+
Sbjct: 147 SGRSTGEAYIQFATSALAERALEKHKEKIGHRYIEIFRSSLSEARAALAS 196
>gi|9845253|ref|NP_063921.1| heterogeneous nuclear ribonucleoprotein H2 [Mus musculus]
gi|354474917|ref|XP_003499676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Cricetulus griseus]
gi|354474919|ref|XP_003499677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Cricetulus griseus]
gi|46577330|sp|P70333.1|HNRH2_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|1666700|gb|AAB47243.1| Murine homolog of human ftp-3 [Mus musculus]
gi|13529467|gb|AAH05461.1| Hnrph2 protein [Mus musculus]
gi|26346655|dbj|BAC36976.1| unnamed protein product [Mus musculus]
gi|74139495|dbj|BAE40886.1| unnamed protein product [Mus musculus]
gi|74207684|dbj|BAE40087.1| unnamed protein product [Mus musculus]
gi|74211079|dbj|BAE37634.1| unnamed protein product [Mus musculus]
gi|148688439|gb|EDL20386.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_a [Mus
musculus]
gi|148688441|gb|EDL20388.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_a [Mus
musculus]
gi|344238071|gb|EGV94174.1| Heterogeneous nuclear ribonucleoprotein H2 [Cricetulus griseus]
Length = 449
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
V F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 VRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|384946772|gb|AFI36991.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
Length = 449
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|62078769|ref|NP_001014041.1| heterogeneous nuclear ribonucleoprotein H2 [Rattus norvegicus]
gi|81910860|sp|Q6AY09.1|HNRH2_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|50927747|gb|AAH79240.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Rattus norvegicus]
gi|149055432|gb|EDM07016.1| similar to Murine homolog of human ftp-3, isoform CRA_a [Rattus
norvegicus]
gi|149055433|gb|EDM07017.1| similar to Murine homolog of human ftp-3, isoform CRA_a [Rattus
norvegicus]
Length = 449
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
V F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 VRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|355705000|gb|EHH30925.1| Heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
Length = 449
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++ LP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVSALPWSCSADEVMRFFSDRKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|355691923|gb|EHH27108.1| hypothetical protein EGK_17225 [Macaca mulatta]
Length = 472
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+ +R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKEDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
+DR T+G RY+E+F S++ EMD L
Sbjct: 72 KEDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|9624998|ref|NP_062543.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
gi|74099697|ref|NP_001027565.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
gi|197100479|ref|NP_001125156.1| heterogeneous nuclear ribonucleoprotein H2 [Pongo abelii]
gi|302565696|ref|NP_001180922.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|350536397|ref|NP_001233423.1| heterogeneous nuclear ribonucleoprotein H2 [Pan troglodytes]
gi|109131568|ref|XP_001094080.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Macaca mulatta]
gi|296236002|ref|XP_002763136.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Callithrix jacchus]
gi|332254772|ref|XP_003276506.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Nomascus
leucogenys]
gi|390480025|ref|XP_003735831.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Callithrix
jacchus]
gi|403298789|ref|XP_003940188.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Saimiri boliviensis boliviensis]
gi|403298791|ref|XP_003940189.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Saimiri boliviensis boliviensis]
gi|426396685|ref|XP_004064561.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Gorilla gorilla gorilla]
gi|426396687|ref|XP_004064562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Gorilla gorilla gorilla]
gi|426396689|ref|XP_004064563.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Gorilla gorilla gorilla]
gi|2500576|sp|P55795.1|HNRH2_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=FTP-3; AltName:
Full=Heterogeneous nuclear ribonucleoprotein H';
Short=hnRNP H'
gi|75070864|sp|Q5RD26.1|HNRH2_PONAB RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|1684915|gb|AAB64202.1| FTP3 [Homo sapiens]
gi|55727150|emb|CAH90331.1| hypothetical protein [Pongo abelii]
gi|119623269|gb|EAX02864.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|120660030|gb|AAI30346.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|120660336|gb|AAI30344.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|168277748|dbj|BAG10852.1| heterogeneous nuclear ribonucleoprotein H' [synthetic construct]
gi|313883006|gb|ADR82989.1| heterogeneous nuclear ribonucleoprotein H2 (H') (HNRNPH2),
transcript variant 2 [synthetic construct]
gi|313883348|gb|ADR83160.1| heterogeneous nuclear ribonucleoprotein H2 (H') (HNRNPH2),
transcript variant 2 [synthetic construct]
gi|343958876|dbj|BAK63293.1| heterogeneous nuclear ribonucleoprotein H' [Pan troglodytes]
gi|380812318|gb|AFE78033.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|384946774|gb|AFI36992.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|410264162|gb|JAA20047.1| RPL36A-HNRNPH2 readthrough [Pan troglodytes]
gi|410303792|gb|JAA30496.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410303794|gb|JAA30497.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410355365|gb|JAA44286.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410355367|gb|JAA44287.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
Length = 449
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|242017929|ref|XP_002429436.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514368|gb|EEB16698.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 766
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 27/160 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ +MG+RY+EV++S +E+ V GGS E +
Sbjct: 249 DMALKRHKHHMGQRYIEVYKSTGEEFVF--------VAGGS----------STEAHNFLT 290
Query: 106 HTG--ILRLRGLPFSAGKDDIMDFFK-------DFVLSEDSIHITMNSDGRPTGEAFVEF 156
G I+R+RGLP+ + +++FF+ + + ED + SDGR TG+AFV F
Sbjct: 291 RGGQVIIRMRGLPYECTAEQVLEFFRTGENNTCEVLDGEDGVLFVKKSDGRATGDAFVLF 350
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
+N D+ A++K R +GSRYIELF S+ E+ + L+R +
Sbjct: 351 SNESDAPKALSKHRERIGSRYIELFRSTTAEVQQVLNRAQ 390
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 28/196 (14%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV K++ + TG+AF + AL ++R+ +G RY+E+FRS E + +
Sbjct: 332 VLFVKKSDGRATGDAFVLFSNESDAPKALSKHRERIGSRYIELFRSTTAEVQQVLNRAQE 391
Query: 81 DVRGGSPHRSIPRAKSHDEGK------------DSAVHTGILRLRGLPFSAGKDDIMDFF 128
D + +P S +RLRGLP+ A + I+DF
Sbjct: 392 D------PKPVPVQLPPQLPTPLPTTLYPQQLITSGTSKNCIRLRGLPYEAQVEHILDFL 445
Query: 129 KDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG--SRYIEL 180
D+ + +H+ NS G+P+GEAF++ ++E S A R M G RY+E+
Sbjct: 446 GDYAKNIVFQGVHMVYNSHGQPSGEAFIQM-DSEASAFHAANHRHHQYMIFGKKQRYVEV 504
Query: 181 FPSSHEEMDEALSRGR 196
F S ++M+ L+ G+
Sbjct: 505 FQCSGDDMNSILTGGQ 520
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P S DE D ++R RGLP+ + DI FF+ + + + + ++ GR GE
Sbjct: 181 PGLCSKDEEVDP---NSVVRARGLPWQSSDGDIARFFRGLNIEKGGVALCLSPAGRRNGE 237
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
A V F N A+ + + +G RYIE++ S+ EE
Sbjct: 238 ALVRFVNQAHRDMALKRHKHHMGQRYIEVYKSTGEE 273
>gi|432852531|ref|XP_004067294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 398
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 20/171 (11%)
Query: 19 IVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
I V F + K + +GEAF L AL ++R+ MG RY+EVF+S R E +
Sbjct: 37 INGVCFTYSKEGRPSGEAFLELKTAEDFKNALAKDRKYMGHRYIEVFKSNRSEMDWVL-- 94
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS 137
K + + +LRLRGLPF K++I+ FF + +
Sbjct: 95 -----------------KRNGPADYDSCSGCMLRLRGLPFGCSKEEIVQFFSGLRIVPNG 137
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 138 ITLPVDYQGRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEI 188
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S ++++ FF D + + + T + +GRP+GEAF+E AED K A+
Sbjct: 9 VVRIRGLPWSCTQEEVASFFSDCDIMGKINGVCFTYSKEGRPSGEAFLELKTAEDFKNAL 68
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
AKDR +G RYIE+F S+ EMD L R
Sbjct: 69 AKDRKYMGHRYIEVFKSNRSEMDWVLKR 96
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A + D+ FF + +HI + +G+ TGEA VEF + ED
Sbjct: 289 SGYHNGHFVHMRGLPFRASEGDVAKFFSPLIPLR--VHIDVAPNGKSTGEADVEFRSHED 346
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 347 AVAAMSKDKNHMQHRYIELFLNS 369
>gi|350529357|ref|NP_001121205.2| G-rich RNA sequence binding factor 1 [Xenopus laevis]
Length = 440
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 97/174 (55%), Gaps = 4/174 (2%)
Query: 18 DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
D V +F +++ K G+A V A++++++ MG+RYVEVF ++E +++ N
Sbjct: 124 DGVHFIF-NRDGKPRGDAVIEFESAEDVQKAVEQHKKYMGQRYVEVFEMNQKEA-ESLLN 181
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS 137
+ SP R + S S GI+RLRGLP+S + DI+ FF ++++
Sbjct: 182 RMHSAL--SPTRPSSMSLSPQSSMASPPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEG 239
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
I ++ GR +GEAFV+F + E + A+ K + +GSRYIE+FPS ++ A
Sbjct: 240 ITFVLDQRGRKSGEAFVQFLSQEHADQALLKHKQEIGSRYIEIFPSRRNDVQTA 293
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I+R+RGLP+S DD+++FF D + D +H N DG+P G+A +EF +AED + A+
Sbjct: 95 IVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIFNRDGKPRGDAVIEFESAEDVQKAV 154
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + +G RY+E+F + +E + L+R
Sbjct: 155 EQHKKYMGQRYVEVFEMNQKEAESLLNR 182
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 89/206 (43%), Gaps = 41/206 (19%)
Query: 17 MDIVD--VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DI D + FV + + +GEAF D AL +++Q +G RY+E+F S+R +
Sbjct: 233 LDIADEGITFVLDQRGRKSGEAFVQFLSQEHADQALLKHKQEIGSRYIEIFPSRRNDVQT 292
Query: 74 A-------------------------IANEVSDVRGGSPHR----------SIPRAKSHD 98
A I N D+ P S HD
Sbjct: 293 ARFPFRRRKGVTFAPTIKDLYDPDNCINNTSKDLLSDVPENGHINDYVKEMSAKSVDVHD 352
Query: 99 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 158
S VH + +RGLPF A DI +FF + + SI + ++ G TGEA V F
Sbjct: 353 FTVMSPVHD--IHIRGLPFHASGQDIANFFHPIMPLKISIEYSADAGG-ATGEAVVRFLT 409
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSS 184
+D+ AAMAK+R Y+EL+ +S
Sbjct: 410 HDDAVAAMAKNRCHSQHGYLELYLNS 435
>gi|410989009|ref|XP_004000762.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Felis catus]
Length = 432
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|395861473|ref|XP_003803009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Otolemur
garnettii]
Length = 432
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|301788126|ref|XP_002929479.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Ailuropoda melanoleuca]
gi|344306831|ref|XP_003422087.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Loxodonta africana]
Length = 432
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|426257857|ref|XP_004022538.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Ovis aries]
gi|146231796|gb|ABQ12973.1| heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|296471005|tpg|DAA13120.1| TPA: heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|440901707|gb|ELR52599.1| Heterogeneous nuclear ribonucleoprotein H2 [Bos grunniens mutus]
Length = 449
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|74007970|ref|XP_861916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Canis lupus familiaris]
gi|345807788|ref|XP_862053.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 7
[Canis lupus familiaris]
Length = 449
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|348570626|ref|XP_003471098.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Cavia
porcellus]
Length = 449
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|115496520|ref|NP_001069476.1| heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|109892458|sp|Q3SZF3.1|HNRH2_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|74354329|gb|AAI02895.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Bos taurus]
Length = 449
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|149755198|ref|XP_001493828.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Equus
caballus]
gi|291393212|ref|XP_002713068.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Oryctolagus
cuniculus]
gi|291408077|ref|XP_002720410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Oryctolagus cuniculus]
gi|281341597|gb|EFB17181.1| hypothetical protein PANDA_019663 [Ailuropoda melanoleuca]
Length = 449
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|417401138|gb|JAA47465.1| Putative splicing factor hnrnp-f [Desmodus rotundus]
Length = 449
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|432101976|gb|ELK29797.1| Heterogeneous nuclear ribonucleoprotein H2 [Myotis davidii]
Length = 449
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|148886840|sp|Q8VHV7.2|HNRH1_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; AltName: Full=Ratsg1; Contains: RecName:
Full=Heterogeneous nuclear ribonucleoprotein H,
N-terminally processed
Length = 449
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF +++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSEEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>gi|60098931|emb|CAH65296.1| hypothetical protein RCJMB04_15n19 [Gallus gallus]
Length = 499
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I L + + F++ + + +GEAF L V AL+++R+ MG RYV VF+S
Sbjct: 64 CKI---LNGALGIRFIYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVVVFKSNN 120
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 121 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 161
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 162 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 221
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI--TMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+ +F S++ EMD L
Sbjct: 102 KKDRETMGHRYVVVFKSNNVEMDWVL 127
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 320 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 377
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 378 DKANMQHRYVELFLNS 393
>gi|348534060|ref|XP_003454521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Oreochromis niloticus]
Length = 401
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 20/171 (11%)
Query: 19 IVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
+ V F + K + +GEAF L AL ++R+ MG RY+EVF+S R E +
Sbjct: 37 VNGVCFTYSKEGRPSGEAFIELKTAEDFKNALAKDRKYMGHRYIEVFKSNRSEMDWVLK- 95
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS 137
RS P G +LRLRGLPF K++I+ FF + +
Sbjct: 96 -----------RSGPADYDSCSGC-------MLRLRGLPFGCSKEEIVQFFSGLRIVPNG 137
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 138 ITLPVDYQGRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEI 188
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S +D++ FF D V + + T + +GRP+GEAF+E AED K A+
Sbjct: 9 VVRIRGLPWSCTQDEVASFFSDCDIVGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNAL 68
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
AKDR +G RYIE+F S+ EMD L R
Sbjct: 69 AKDRKYMGHRYIEVFKSNRSEMDWVLKR 96
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H+G + +RGLPF A + DI FF L+ IHI M +G+ TGEA VEF + ED
Sbjct: 288 SGFHSGHFVHMRGLPFRATEGDIAKFFSP--LNPLRIHIDMAPNGKSTGEADVEFRSHED 345
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ AAM+KD+ + RYIELF +S +SR
Sbjct: 346 AVAAMSKDKNHMQHRYIELFLNSTASGAAEMSR 378
>gi|431895711|gb|ELK05132.1| Heterogeneous nuclear ribonucleoprotein H2 [Pteropus alecto]
Length = 422
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 16 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 75
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 76 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 116
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 117 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 164
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 251 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 308
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 309 ATHEDAVAAMAKDKANMQHRYVELFLNS 336
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 125 MDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182
M FF D + + I +GRP+GEAFVE + ++ K A+ KDR T+G RY+E+F
Sbjct: 1 MRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK 60
Query: 183 SSHEEMDEAL 192
S+ EMD L
Sbjct: 61 SNSVEMDWVL 70
>gi|410912106|ref|XP_003969531.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Takifugu
rubripes]
Length = 371
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
V F + K + +GEAF L AL ++R+ MG RY+EVF+S R E +
Sbjct: 40 VCFTYSKEGRPSGEAFIELKTAEDFKNALAKDRKYMGHRYIEVFKSNRSEMDWVLK---- 95
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
RS P G LRLRGLPF K++I+ FF + + I +
Sbjct: 96 --------RSGPADYDSCSG-------CTLRLRGLPFGCSKEEIVQFFSGLRIVPNGITL 140
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 141 PVDYQGRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEI 188
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S ++++ FF D + + + T + +GRP+GEAF+E AED K A+
Sbjct: 9 VVRIRGLPWSCTQEEVAGFFSDCDIIGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNAL 68
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
AKDR +G RYIE+F S+ EMD L R
Sbjct: 69 AKDRKYMGHRYIEVFKSNRSEMDWVLKR 96
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 92/213 (43%), Gaps = 44/213 (20%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE---YYKAIANE 78
L V + TGEAF + AL ++++ +G RY+E+F+S R E YY+
Sbjct: 139 TLPVDYQGRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEIRAYYELPRRG 198
Query: 79 VSDVRGGSPHRSI------------------------------------PRAKSHDEGKD 102
+ R G R + + +D G
Sbjct: 199 MGGQRPGPYDRPMISGPRGGFFGPGPGRGGSLMEPMRSGGGYGGGMGGHGYSGQNDGG-- 256
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
H+G + +RGLPF A + D+ FF L+ +HI +G+ TGEA VEF + ED
Sbjct: 257 PGFHSGHFVHMRGLPFRATEGDVAKFFSP--LNPLRVHIDFAPNGKSTGEADVEFRSHED 314
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ AAM+KD+ + RYIELF +S L R
Sbjct: 315 AVAAMSKDKNHMQHRYIELFLNSTSSGASELGR 347
>gi|405968884|gb|EKC33911.1| Epithelial splicing regulatory protein 2 [Crassostrea gigas]
Length = 727
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 21/177 (11%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L + + GEA L D AL+R++ ++G+RY+EV YKA + +V
Sbjct: 256 LCLSPQGRRNGEALVRLENEQNRDLALKRHKHHIGQRYIEV--------YKATGKDFVNV 307
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK-----DFVLSEDS 137
GGS S + S I+R+RGLPF+A +++FF + E+
Sbjct: 308 AGGS--------NSEAQAFLSRGGQVIIRMRGLPFTATAQQVLEFFAREPSVSVLDGEEG 359
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
I DGR TG+AFV A+ ED+ +A+ K R +G+RYIELF S+ E+ + L+R
Sbjct: 360 ILFVHYPDGRSTGDAFVLLASEEDAVSALKKHREIMGTRYIELFKSTTAEVQQVLNR 416
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 98/195 (50%), Gaps = 23/195 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFVH + + TG+AF +L AL+++R+ MG RY+E+F+S E + + N
Sbjct: 360 ILFVHYPDGRSTGDAFVLLASEEDAVSALKKHREIMGTRYIELFKSTTAE-VQQVLNRSM 418
Query: 81 DVRGGSPHRS-IPRAKSHDEGKD-------SAVHTG----ILRLRGLPFSAGKDDIMDF- 127
D R P + +P + + S + +G +RLR +P A DI+ F
Sbjct: 419 DPRNPEPQETPLPAILTQLTPQSQLPYIPQSLITSGTRRDCIRLRNIPGGAQVTDILTFL 478
Query: 128 --FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK-AAMAKDRMTL----GSRYIEL 180
F F++ + +H+ + G P+GEAF++ + E ++ A+ +++ + R I++
Sbjct: 479 GEFSQFIIFQ-GVHMVYTAQGEPSGEAFIQMDSEESAQLTAINRNKRPIVFAQKKRIIDV 537
Query: 181 FPSSHEEMDEALSRG 195
S E+M+ L+ G
Sbjct: 538 IQCSGEDMNLVLTNG 552
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + + ++ GR GEA V N ++ A+ +
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGVALCLSPQGRRNGEALVRLENEQNRDLALKR 284
Query: 169 DRMTLGSRYIELFPS-----------SHEEMDEALSRG 195
+ +G RYIE++ + S+ E LSRG
Sbjct: 285 HKHHIGQRYIEVYKATGKDFVNVAGGSNSEAQAFLSRG 322
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 104 AVHTG---ILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANA 159
HTG ++ +RGLP +A DI++FF+ F ++ ++I I + DGR TG+A + F
Sbjct: 643 VTHTGPPTLVVMRGLPVNAQVQDILNFFQGFPEVTPENIQIQILPDGRLTGDALISFMTR 702
Query: 160 EDSKAAMA-KDRMTLGSRYIELF 181
+++ A+A + + T+G IELF
Sbjct: 703 SEAERAIATRGKQTMGQCLIELF 725
>gi|298713992|emb|CBJ27224.1| heterogeneous nuclear ribonucleoprotein, putative [Ectocarpus
siliculosus]
Length = 525
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 36/209 (17%)
Query: 16 LMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
L ++D++ A + G + ALQR + RY+EV + R +YY A+
Sbjct: 309 LGPVLDIVLEGGAAGGEVGAITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAV 368
Query: 76 ----ANEVSDVRGGSPHRSI--------PRAKSHDEG----KDSAVHTG----------- 108
++V +P P + + D+A+ G
Sbjct: 369 IKRSTGGAAEVAPTTPAGVGGGGEQDGDPAVQGQNGTVVHQSDTALAMGSAKAPGPAAAA 428
Query: 109 ---------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
++R+RGLP+ A K ++M FFK + E+ + +DGR TGEA+V FA
Sbjct: 429 GSAGDAKGTVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATR 488
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
ED+K + KDR +GSRYIELF SS EEM
Sbjct: 489 EDAKMGLRKDREMIGSRYIELFTSSPEEM 517
>gi|169641981|gb|AAI60694.1| LOC100158276 protein [Xenopus laevis]
Length = 348
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 85
+++ K G+A V A++++++ MG+RYVEVF ++E +++ N +
Sbjct: 39 NRDGKPRGDAVIEFESAEDVQKAVEQHKKYMGQRYVEVFEMNQKEA-ESLLNRMHSAL-- 95
Query: 86 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 145
SP R + S S GI+RLRGLP+S + DI+ FF ++++ I ++
Sbjct: 96 SPTRPSSMSLSPQSSMASPPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQR 155
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
GR +GEAFV+F + E + A+ K + +GSRYIE+FPS ++ A
Sbjct: 156 GRKSGEAFVQFLSQEHADQALLKHKQEIGSRYIEIFPSRRNDVQTA 201
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I+R+RGLP+S DD+++FF D + D +H N DG+P G+A +EF +AED + A+
Sbjct: 3 IVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIFNRDGKPRGDAVIEFESAEDVQKAV 62
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + +G RY+E+F + +E + L+R
Sbjct: 63 EQHKKYMGQRYVEVFEMNQKEAESLLNR 90
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 89/206 (43%), Gaps = 41/206 (19%)
Query: 17 MDIVD--VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DI D + FV + + +GEAF D AL +++Q +G RY+E+F S+R +
Sbjct: 141 LDIADEGITFVLDQRGRKSGEAFVQFLSQEHADQALLKHKQEIGSRYIEIFPSRRNDVQT 200
Query: 74 A-------------------------IANEVSDVRGGSPHR----------SIPRAKSHD 98
A I N D+ P S HD
Sbjct: 201 ARFPFRRRKGVTFAPTIKDLYDPDNCINNTSKDLLSDVPENGHINDYVKEMSAKSVDVHD 260
Query: 99 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 158
S VH + +RGLPF A DI +FF + + SI + ++ G TGEA V F
Sbjct: 261 FTVMSPVHD--IHIRGLPFHASGQDIANFFHPIMPLKISIEYSADAGG-ATGEAVVRFLT 317
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSS 184
+D+ AAMAK+R Y+EL+ +S
Sbjct: 318 HDDAVAAMAKNRCHSQHGYLELYLNS 343
>gi|357613158|gb|EHJ68351.1| putative Heterogeneous nuclear ribonucleoprotein H [Danaus
plexippus]
Length = 343
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 12/157 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GE F + V AL+++++N+GRRY+EVF + RQ+ A+ N + G I
Sbjct: 52 SGECFVEVQSQDDVTHALKKDKENIGRRYIEVFSTDRQDMEWAL-NAMRQSENG--FDVI 108
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P GI++LRGLPF K++I+ FF + +D +H+ + GR +GE
Sbjct: 109 PNVSDD---------FGIVKLRGLPFGCSKEEIIQFFNGLSVVQDGVHLLSDHTGRASGE 159
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
AFV F + + ++ A+ +D +G RYIE+F SS +++
Sbjct: 160 AFVYFVDKQSARDALDRDMEKIGHRYIEVFLSSADKV 196
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFK--DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I++LRGLPFS +D++ F + + ++ +H+T GRP+GE FVE + +D A+
Sbjct: 10 IIKLRGLPFSTTAEDVLTFLSGVNVINDKEGVHLTEVRPGRPSGECFVEVQSQDDVTHAL 69
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALS 193
KD+ +G RYIE+F + ++M+ AL+
Sbjct: 70 KKDKENIGRRYIEVFSTDRQDMEWALN 96
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 16 LMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS---KRQEYY 72
+ D V +L H + +GEAF AL R+ + +G RY+EVF S K + Y
Sbjct: 142 VQDGVHLLSDH-TGRASGEAFVYFVDKQSARDALDRDMEKIGHRYIEVFLSSADKVRAYG 200
Query: 73 KAIANEVSDVRGGSPHRSIPRAKS--------------HDEGKDSAVHTG---------I 109
+ RG +R P ++ G +TG
Sbjct: 201 ARLEGGGFKSRG---YRPTPYDRNDRLSGRFGGRGRGSFARGGSGGSYTGRGGRLGSSHC 257
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLPF A DI FFK + +I+I ++ GRP+GEA VEF ED+ AM +D
Sbjct: 258 VHMRGLPFKATPQDIAYFFKP--IRPLNINIHYDNSGRPSGEADVEFECHEDAMRAMRRD 315
Query: 170 RMTLGSRYIELFPSS 184
+ + RYIELF +S
Sbjct: 316 KNNMEHRYIELFMNS 330
>gi|397478241|ref|XP_003810461.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Pan
paniscus]
Length = 314
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RY E+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYTEIFKSSRAEV 191
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
>gi|344246677|gb|EGW02781.1| RNA-binding protein 12 [Cricetulus griseus]
Length = 997
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 11/160 (6%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G H +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGYCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
N D KAA+ + + +G+R+I++ P + + M E + R
Sbjct: 479 RNDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIR 518
Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEE 187
RM + RY+E+ P++ +
Sbjct: 364 RMLMIQRYVEVSPATERQ 381
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG S+ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMVLNPEGDVSSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E ++H+ ++++G+ G+A V+F +D++ + R L R + + E+M E
Sbjct: 568 PVDESAVHVLVDNNGQGLGQALVQFKTEDDARKSEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 922 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 981
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 982 LNDR-PIGSRKVKL 994
>gi|211830818|gb|AAH26891.2| Rbm12 protein [Mus musculus]
Length = 887
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 11/160 (6%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G H +++PR+KS K
Sbjct: 244 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQK 303
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 304 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 363
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
N D KAA+ + + +G+R+I++ P + + M E + R
Sbjct: 364 RNDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIR 403
Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 191 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 248
Query: 170 RMTLGSRYIELFPSSHEE 187
RM + RY+E+ P++ +
Sbjct: 249 RMLMIQRYVEVSPATERQ 266
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 338 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK----K 393
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG+ S+ + +PFS K D++ F +
Sbjct: 394 GMLEKIDMIRKRLQNFSYDQRELVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQFLEGI 452
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F +D+ + R L R + + E+M E
Sbjct: 453 PVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVTLEDMRE 511
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 812 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 871
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 872 LNDR-PIGSRKVKL 884
>gi|156550801|ref|XP_001600558.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Nasonia
vitripennis]
Length = 563
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 21/184 (11%)
Query: 10 CTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQ 69
C+I H I + + + + +GEA+ + ++ A +R+R +MG RY+EVF++KR
Sbjct: 36 CSITHGKAGIH--MTMSREGRPSGEAYIEMDSEEDIEKACKRDRDHMGHRYIEVFKAKRG 93
Query: 70 EYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
E I ++ ++ + G +RLRGLPF K++I FF
Sbjct: 94 EMEWVIKRSCLNL-------------------ENVMDDGCVRLRGLPFGCSKEEIAQFFS 134
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
+ + I + + GR TGEA+V+F N + ++ A+ K + +G RYIE+F SS E+
Sbjct: 135 GLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQKHKEKIGHRYIEIFRSSLSEVR 194
Query: 190 EALS 193
++
Sbjct: 195 ASIG 198
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 96 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAF 153
++DEG D ++++RGLP+S D+IM FF D ++ + IH+TM+ +GRP+GEA+
Sbjct: 2 ANDEG-DHNEEGFVVKVRGLPWSTTVDEIMKFFGDCSITHGKAGIHMTMSREGRPSGEAY 60
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+E + ED + A +DR +G RYIE+F + EM+ + R
Sbjct: 61 IEMDSEEDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVIKR 101
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLPF A + DI DFF+ LS SI I + + GR +GEA VEFA+ E++ AM+K
Sbjct: 297 CVHMRGLPFRATEQDIADFFRP--LSPISIRIILENGGRASGEADVEFASHEEAVKAMSK 354
Query: 169 DRMTLGSRYIELFPSSH 185
D+ + RYIELF +S
Sbjct: 355 DKSHMSHRYIELFLNSQ 371
>gi|126328016|ref|XP_001371380.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 468
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 19/156 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF L +V AL+++R+ MG RYVEVF+S E + + +
Sbjct: 54 SGEAFVELESEDEVTLALKKDRETMGHRYVEVFKSNNIEMDWVLKHTAPN---------- 103
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
S D D G +RLRGLPF K++I+ FF + + I + ++ GR +GE
Sbjct: 104 ----SLDTASD-----GFVRLRGLPFRCNKEEIVQFFSGLEIMPNGITLPVDFQGRNSGE 154
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
AFV+FA+ E ++ A+ K + +G RYIE+F SS E
Sbjct: 155 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSSQAE 190
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S DI FF + + + IH +GRP+GEAFVE + ++ A+
Sbjct: 12 VVKVRGLPWSCSASDIQQFFSECKIQNGAAGIHFIYTREGRPSGEAFVELESEDEVTLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNIEMDWVL 97
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+ A ++DI DFF L +I + SDGR TGEA VEFA ED+ AAM+KD
Sbjct: 286 VHMRGLPYKATENDICDFFSP--LKPVGAYIEIGSDGRVTGEADVEFATHEDAVAAMSKD 343
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
+ + RYIELF +S E D +
Sbjct: 344 KANMQHRYIELFLNSTTEADSS 365
>gi|395736587|ref|XP_003780726.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H [Pongo abelii]
Length = 430
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVE F+S
Sbjct: 35 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEGFKSNN 91
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 92 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 132
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 133 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 192
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFA 157
G D + ++++RGLP+S D++ FF D + + I +GRP+GEAFVE
Sbjct: 4 GTDRSGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 63
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+ ++ K A+ KDR T+G RY+E F S++ EMD L
Sbjct: 64 SEDEVKLALKKDRETMGHRYVEGFKSNNVEMDWVL 98
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 291 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 348
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 349 DKANMQHRYVELFLNS 364
>gi|391341907|ref|XP_003745268.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Metaseiulus occidentalis]
Length = 503
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 22/155 (14%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
++ + +GEA+ L V+ AL+++ +NMG RY+EVFR+KR E + S+
Sbjct: 47 RDGRASGEAYVELESEPDVENALKKDNENMGNRYIEVFRAKRAEMEWCMKKSSSNT---- 102
Query: 87 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
+ GI+RLRG+PF K++I +FF + + I I ++ +G
Sbjct: 103 ------------------LDEGIVRLRGIPFGCSKEEIANFFSGLEIVPNGIVIPVDFNG 144
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
R G+A+V+FA+ E ++ A+ K + +G RYIE+F
Sbjct: 145 RTAGDAYVQFASKEAAEKALEKHKERIGHRYIEIF 179
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
I+RLRG+P+S+ DD+++F V +D IH T DGR +GEA+VE + D + A
Sbjct: 9 IVRLRGMPWSSTNDDVLNFLGSDVHVLNGKDGIHFTYTRDGRASGEAYVELESEPDVENA 68
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ KD +G+RYIE+F + EM+ + +
Sbjct: 69 LKKDNENMGNRYIEVFRAKRAEMEWCMKK 97
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 47/209 (22%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV-- 79
V+ V N + G+A+ + AL+++++ +G RY+E+F+S E ++ ++
Sbjct: 137 VIPVDFNGRTAGDAYVQFASKEAAEKALEKHKERIGHRYIEIFKSSLSEMESSLHAQLRS 196
Query: 80 ------------------SDVRGGSPH-------RSIP--RAKSHDEGKDSAVHTG---- 108
+ RGG P R P R + + G D + G
Sbjct: 197 FGGGFGGSGGGGRNFGGAAPQRGGRPGPYDRMMGRGPPPRRDEGYSTGYDDYGYGGRRAG 256
Query: 109 ------------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
+ +RG+P+ A D+ DFF L S+ + GRP+GE VEF
Sbjct: 257 KSSGASYSGQGHFVHMRGIPYKATDSDVYDFFAP--LRPVSVQFIYEAGGRPSGECDVEF 314
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSH 185
++ D++ AMAK+ +G+RY+ELF S+
Sbjct: 315 SSHRDAQDAMAKNNAHMGTRYVELFLKSN 343
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A +DD+ FF + S+ T ++ GRP+GE VEFA+ D+ AM +
Sbjct: 403 FVHMRGLPYKACEDDVFQFFDP--IRPASVRFTFDATGRPSGECDVEFASHRDAAEAMER 460
Query: 169 DRMTLGSRYIELF 181
+ +G+RY+ELF
Sbjct: 461 NNAHMGNRYVELF 473
>gi|19070198|gb|AAL83754.1| SWAN [Mus musculus]
gi|21666374|gb|AAM73683.1| swan [Mus musculus]
gi|21666376|gb|AAM73684.1| swan [Mus musculus]
Length = 1003
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 11/160 (6%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G H +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
N D KAA+ + + +G+R+I++ P + + M E + R
Sbjct: 479 RNDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIR 518
Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEE 187
RM + RY+E+ P++ +
Sbjct: 364 RMLMIQRYVEVSPATERQ 381
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG+ S+ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQRELVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F +D+ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 928 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 987
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 988 LNDR-PIGSRKVKL 1000
>gi|26325168|dbj|BAC26338.1| unnamed protein product [Mus musculus]
Length = 841
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 11/160 (6%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G H +++PR+KS K
Sbjct: 203 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQK 262
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 263 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 322
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
N D KAA+ + + +G+R+I++ P + + M E + R
Sbjct: 323 RNDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIR 362
Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 150 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 207
Query: 170 RMTLGSRYIELFPSSHEE 187
RM + RY+E+ P++ +
Sbjct: 208 RMLMIQRYVEVSPATERQ 225
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 297 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK----K 352
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG+ S+ + +PFS K D++ F +
Sbjct: 353 GMLEKIDMIRKRLQNFSYDQRELVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQFLEGI 411
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E ++H+ ++++G+ G+A V+F +D+ + R L R + + E+M E
Sbjct: 412 PVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVTLEDMRE 470
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 766 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 825
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 826 LNDR-PIGSRKVKL 838
>gi|190402267|gb|ACE77677.1| RNA binding motif protein 12, isoform 1 (predicted) [Sorex araneus]
Length = 1520
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +GSR+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGSRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGSRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG S+ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVSSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 622
Query: 187 EMDE 190
+M E
Sbjct: 623 DMRE 626
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-- 166
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 911 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVFD 970
Query: 167 AKDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 971 LNDR-PIGSRKVKLM 984
>gi|47217849|emb|CAG02342.1| unnamed protein product [Tetraodon nigroviridis]
Length = 776
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 97/182 (53%), Gaps = 8/182 (4%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI----A 76
+LFV + + + TG+AF + AL++++Q +G+RY+E+FRS E + + +
Sbjct: 389 LLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNRYMS 448
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LS 134
+ SP S+P + ++ +RLRGLP++AG +DI++F + +
Sbjct: 449 TPLISTLPPSPMVSVPVLSTPPFLPTASTARDCVRLRGLPYTAGIEDILEFMGEHTVDIK 508
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+H+ +N GRP+G+AF++ + + + A + T+ RY+E+F S EEM L
Sbjct: 509 PHGVHMVLNQQGRPSGDAFIQMKSPDKAFMVAQKCHKKTMKDRYVEVFQCSTEEMSIVLM 568
Query: 194 RG 195
G
Sbjct: 569 GG 570
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 25/178 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEV 79
L ++ + GEA D AL+R++ +MG RY+EV+++ +E+ K +NEV
Sbjct: 287 LCLNAQGRRNGEALVRFINSEHRDLALERHKHHMGNRYIEVYKATGEEFLKIAGGTSNEV 346
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF---KDFVLSED 136
+ K++ V I+R+RGLPF+A +++ F +
Sbjct: 347 AQFLS----------------KENQV---IIRMRGLPFTATPQEVLSFLGPESPVTDGSE 387
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AFV F+ E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 388 GLLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNR 445
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK ++ + + +N+ GR GEA V F N+E A+ +
Sbjct: 256 VIRARGLPWQSSDQDIARFFKGLSIARGGVALCLNAQGRRNGEALVRFINSEHRDLALER 315
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ EE
Sbjct: 316 HKHHMGNRYIEVYKATGEE 334
>gi|170035383|ref|XP_001845549.1| G-rich sequence factor-1 [Culex quinquefasciatus]
gi|167877365|gb|EDS40748.1| G-rich sequence factor-1 [Culex quinquefasciatus]
Length = 508
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 82/167 (49%), Gaps = 24/167 (14%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TGEA+ L AL N+ +G RY+EVF + +Y +A+ + D GG
Sbjct: 57 TGEAYLRLPTLDDQIKALDLNKATIGHRYIEVFTANEDQYEQAVNDGEGDEDGGP----- 111
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD--GRPT 149
+L+LRGLP+S K+DI FF + I + +D GR +
Sbjct: 112 -----------------VLKLRGLPWSCTKEDIKRFFVGLTIKNGINGILLLTDQLGRAS 154
Query: 150 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
GEA VEFA D++ AM K + +GSRYIELF SS EM A R R
Sbjct: 155 GEAIVEFATEADAEQAMNKQKEKIGSRYIELFRSSTREMKWAEKRAR 201
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
LRG+PFS DI DFF L +I +S GRP+GE F E++ AM K +
Sbjct: 428 LRGMPFSCDDQDIQDFF--MPLRPVKANIEYDSRGRPSGEGNAYFETVEEAMKAMKKHKE 485
Query: 172 TLGSRYIELFPSSHE 186
+GSRYIELF + +
Sbjct: 486 KMGSRYIELFAGARK 500
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 96 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFV 154
S + G DS+ +RLRGLP++ + DI DF + + + +HI +N+ R TGEA++
Sbjct: 7 SANAGGDSSAF--YIRLRGLPWNITEQDIRDFLQGVQV--EHVHIGINAMTKRQTGEAYL 62
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+D A+ ++ T+G RYIE+F ++ ++ ++A++ G
Sbjct: 63 RLPTLDDQIKALDLNKATIGHRYIEVFTANEDQYEQAVNDG 103
>gi|355757549|gb|EHH61074.1| Heterogeneous nuclear ribonucleoprotein H2 [Macaca fascicularis]
Length = 449
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF ++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSNEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|224064269|ref|XP_002191895.1| PREDICTED: epithelial splicing regulatory protein 2 [Taeniopygia
guttata]
Length = 702
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 25/178 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEV 79
L ++ + GEA Q D AL+R++ +MG RY+EV+++ +E+ K +NEV
Sbjct: 258 LCLNSQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLKIAGGTSNEV 317
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSED 136
+ K++ V I+R+RGLPF+A ++D++ F ++
Sbjct: 318 AQFLS----------------KENQV---IIRMRGLPFTATQEDVLGFLGSECPVTGGKE 358
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AFV F+ E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 359 GLLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + +S
Sbjct: 360 LLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNRYMS 419
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ I + +RLRGLP++AG DDI++F D + +
Sbjct: 420 TPLIPTLPTPIIPVIPPPYTIATGSIRDCVRLRGLPYTAGIDDILEFMGDATGDIKPHGV 479
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + A + + RY+E+F S EEM+ L G
Sbjct: 480 HMVLNQQGRPSGDAFIQMKSADKAFMVAQKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 537
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + + +NS GR GEA V F N+E A+ +
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNSQGRRNGEALVRFVNSEQRDLALER 286
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ EE
Sbjct: 287 HKHHMGSRYIEVYKATGEE 305
>gi|169731516|gb|ACA64888.1| RNA binding motif protein 12 (predicted) [Callicebus moloch]
Length = 1465
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 626
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 856 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 915
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 916 LNDR-PIGSRKVKLM 929
>gi|296199717|ref|XP_002747276.1| PREDICTED: RNA-binding protein 12 isoform 1 [Callithrix jacchus]
Length = 1460
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG S+ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMILNPEGDVSSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 626
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 851 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 910
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 911 LNDR-PIGSRKVKLM 924
>gi|166831595|gb|ABY90120.1| RNA binding motif protein 12 (predicted) [Callithrix jacchus]
Length = 1460
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG S+ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMILNPEGDVSSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 626
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 851 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 910
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 911 LNDR-PIGSRKVKLM 924
>gi|324504848|gb|ADY42090.1| Heterogeneous nuclear ribonucleoprotein H2 [Ascaris suum]
Length = 282
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
L +++ + +GEAF ++AL R++Q+MG+RY+EVF + + I
Sbjct: 86 TLTKNRDARPSGEAFVAFNNNEDYEYALTRDKQHMGKRYIEVFPASASDVEYNITGPERR 145
Query: 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141
+R G S+P G+D T I+RLRGLP+ D+I FF ++ + I +
Sbjct: 146 LRMGI---SLP-------GRD----TSIVRLRGLPYGCTNDEITRFFHPIPIAANGIVLP 191
Query: 142 MN-SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+ G+ TG+AFV F + + A+ ++R + RYIE+FPSS+ EM AL
Sbjct: 192 YDHRSGKATGDAFVAFYEPDSAARALERNRNNIQHRYIEVFPSSYGEMLRAL 243
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 56/85 (65%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+++ RGLP+S +++I FF+ S I +T N D RP+GEAFV F N ED + A+ +
Sbjct: 56 VVKCRGLPWSCTEEEIRIFFQPADRSIVKITLTKNRDARPSGEAFVAFNNNEDYEYALTR 115
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
D+ +G RYIE+FP+S +++ ++
Sbjct: 116 DKQHMGKRYIEVFPASASDVEYNIT 140
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE 78
H++ K TG+AF P AL+RNR N+ RY+EVF S E +A+ E
Sbjct: 194 HRSGKATGDAFVAFYEPDSAARALERNRNNIQHRYIEVFPSSYGEMLRALELE 246
>gi|321459051|gb|EFX70109.1| hypothetical protein DAPPUDRAFT_202511 [Daphnia pulex]
Length = 514
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 28/182 (15%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L + + GEA P D AL+R++ ++G+RY+EV YKA + DV
Sbjct: 206 LCLSPQGRRNGEALVRFISPEHRDMALKRHKHHIGQRYIEV--------YKATGEDFIDV 257
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTG--ILRLRGLPFSAGKDDIMDFFKD-------FVL 133
GG ++E ++ +G I+R+RGLP+ +++FF+ VL
Sbjct: 258 AGGI----------NNEAQNFLSRSGQVIVRMRGLPYDCTAKQVVEFFESGGEDVGSTVL 307
Query: 134 SEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
DS + DGR TG+AFV FA E+ A+AK R +GSRYIELF S+ E+ + L
Sbjct: 308 DGDSGVLFVKKHDGRATGDAFVMFATEEEGSKALAKHRDIIGSRYIELFRSTTAEVQQVL 367
Query: 193 SR 194
+R
Sbjct: 368 NR 369
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 14/187 (7%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV K++ + TG+AF + + AL ++R +G RY+E+FRS E + + +
Sbjct: 313 VLFVKKHDGRATGDAFVMFATEEEGSKALAKHRDIIGSRYIELFRSTTAEVQQVLNRSMD 372
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTG----ILRLRGLPFSAGKDDIMDFFKDFVLS-- 134
+ IP+ + + +G +RLRGLP+ A + I++F + S
Sbjct: 373 PRTYETQAPLIPQLPQMPLLPQNMITSGTRKDCIRLRGLPYEAQVEHILEFLGEHAKSIV 432
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG--SRYIELFPSSHEEM 188
+H+ N+ G+P+GEAF++ ++E S A+ R M G RYIE+F S E+M
Sbjct: 433 YQGVHMVYNAQGQPSGEAFIQM-DSEQSSFQAAQQRHHRYMVFGKKQRYIEVFQCSGEDM 491
Query: 189 DEALSRG 195
L+ G
Sbjct: 492 HVVLTGG 498
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P S DE DS ++R RGLP+ + DI FF+ ++ + + ++ GR GE
Sbjct: 161 PGICSKDEEVDSNT---VVRARGLPWQSSDQDIARFFRGLNVARGGVALCLSPQGRRNGE 217
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
A V F + E A+ + + +G RYIE++ ++ E+
Sbjct: 218 ALVRFISPEHRDMALKRHKHHIGQRYIEVYKATGED 253
>gi|395521348|ref|XP_003764780.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Sarcophilus harrisii]
Length = 304
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 20/171 (11%)
Query: 19 IVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
+ + F++ + + +GEAF L +V+ AL+++R+ M RYVEVFRS E +
Sbjct: 39 VAGIHFIYTREGRPSGEAFVELESEEEVELALKKHRETMAHRYVEVFRSNAVEMDWTLK- 97
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS 137
R+ P S D D G +RLRGLPF+ K+DI+ FF + +
Sbjct: 98 -----------RTAP--NSPDPAGD-----GYVRLRGLPFNCNKEDIVQFFSGLEIMPNG 139
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
I + ++ GR +GEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 140 IMLQVDFRGRNSGEAFVQFASQEIAEKALKKHKERMGHRYIEIFKSSQAEV 190
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D+ FF + IH +GRP+GEAFVE + E+ + A+
Sbjct: 11 VVKVRGLPWSCSASDVQHFFSGCRIRNGVAGIHFIYTREGRPSGEAFVELESEEEVELAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
K R T+ RY+E+F S+ EMD L R
Sbjct: 71 KKHRETMAHRYVEVFRSNAVEMDWTLKR 98
>gi|281182775|ref|NP_001162483.1| RNA-binding protein 12 [Papio anubis]
gi|164623749|gb|ABY64675.1| RNA binding motif protein 12 (predicted) [Papio anubis]
Length = 1466
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQSHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMMLNPEGDVNSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 626
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKLM 930
>gi|54020837|ref|NP_001005664.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus (Silurana)
tropicalis]
gi|49257786|gb|AAH74690.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Xenopus (Silurana)
tropicalis]
gi|89269950|emb|CAJ83715.1| hnrph1 [Xenopus (Silurana) tropicalis]
Length = 441
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + L I F++ + + +GEAF + AL+++R MG RYVEVF+S
Sbjct: 33 CKIANGLSGI---HFIYTREGRPSGEAFVEFETEEDLKLALKKDRATMGHRYVEVFKSNN 89
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 90 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 130
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 131 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 190
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D+I +FF + ++ IH +GRP+GEAFVEF ED K A+
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEFETEEDLKLAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 71 KKDRATMGHRYVEVFKSNNVEMDWVL 96
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A + DI FF L+ +HI + +DGR TGEA VEFA ED+ AAM+K
Sbjct: 278 CVHMRGLPYRATETDIYTFFSP--LNPVRVHIEIGADGRVTGEADVEFATHEDAVAAMSK 335
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 336 DKANMQHRYVELFLNS 351
>gi|358420736|ref|XP_001789374.2| PREDICTED: epithelial splicing regulatory protein 1 [Bos taurus]
gi|296490145|tpg|DAA32258.1| TPA: fusilli-like [Bos taurus]
Length = 767
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 280 DLALQRHKHHMGSRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 323
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA
Sbjct: 324 NQV---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAE-VQQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP+ A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNIRD----------CIRLRGLPYVATTEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ G+ GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSLDQDIARFFKGLNIAKGGAALCLNAQGQRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ E+
Sbjct: 286 HKHHMGSRYIEVYKATGED 304
>gi|291389582|ref|XP_002711385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Oryctolagus
cuniculus]
Length = 415
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 96/180 (53%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF L V AL+++R++ G Y++VF+S R
Sbjct: 34 CTIHD---GATGVHFIYAREGRQSGEAFVELESEDDVKMALKKDRESTGHPYIKVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 91 TELDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++S+ + TGEAFV+FA+ E ++ A+ K + +G R IE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDSEDKITGEAFVQFASQEVAEKALGKHKERIGHRSIEVFKSSQEEV 191
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGATGVHFIYAREGRQSGEAFVELESEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR + G YI++F S E+D L
Sbjct: 72 KKDRESTGHPYIKVFKSHRTELDWVL 97
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+R+RGLP+ A ++ I +FF L+ +HI + D R TGEA VEFA E + AAM+K
Sbjct: 290 CVRMRGLPYKATENHIYNFFSP--LNPVRVHIEIGPDERVTGEADVEFATHEGAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + R IELF +S
Sbjct: 348 DRANMQHRCIELFLNS 363
>gi|395830118|ref|XP_003788182.1| PREDICTED: RNA-binding protein 12 [Otolemur garnettii]
Length = 1478
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTVPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSATENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 869 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 928
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 929 LNDR-PIGSRKVKLM 942
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V ++ +
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
I ++ S + +G + + +PFS K D++ F + +
Sbjct: 513 KIDMIRKRLQNFSYDQREIILNPEGDGNSGKI---CAHITNIPFSITKMDVLQFLEGIPV 569
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
E+++H+ +++ G+ G+A V+F N +D++ + R L R
Sbjct: 570 DENAVHVLVDNSGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
>gi|355686615|gb|AER98118.1| epithelial splicing regulatory protein 1 [Mustela putorius furo]
Length = 561
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 188 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 231
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA
Sbjct: 232 NQV---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 288
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 289 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 323
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 23/187 (12%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA------ 74
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E +
Sbjct: 267 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 326
Query: 75 ---IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
I + P + +P D +RLRGLP++A +DI+DF +F
Sbjct: 327 APLIPLPTPPMIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGEF 376
Query: 132 V--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEM 188
+ +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EEM
Sbjct: 377 STDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEM 436
Query: 189 DEALSRG 195
+ L G
Sbjct: 437 NFVLMGG 443
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 134 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 193
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 194 HKHHMGTRYIEVYKATGED 212
>gi|348564119|ref|XP_003467853.1| PREDICTED: RNA-binding protein 12-like [Cavia porcellus]
Length = 1467
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVGPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAVENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVGPATERQWVAA 385
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 509 GMLEKIDTIRKRLQNFSYDQREMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSEHLHRKKLNGREAFVHVVTLEDMRE 626
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 858 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 917
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 918 LNDR-PIGSRKVKLM 931
>gi|197215644|gb|ACH53036.1| RNA binding motif protein 12, isoform 1 (predicted) [Otolemur
garnettii]
Length = 1475
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTVPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSATENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V ++ +
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
I ++ S + +G + + +PFS K D++ F + +
Sbjct: 513 KIDMIRKRLQNFSYDQREIILNPEGDGNSGKI---CAHITNIPFSITKMDVLQFLEGIPV 569
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
E+++H+ +++ G+ G+A V+F N +D++ + R L R
Sbjct: 570 DENAVHVLVDNSGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 869 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 928
Query: 168 -KDRMTLGSR 176
DR +GSR
Sbjct: 929 LNDR-PIGSR 937
>gi|443682871|gb|ELT87306.1| hypothetical protein CAPTEDRAFT_189098 [Capitella teleta]
Length = 639
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 92/155 (59%), Gaps = 18/155 (11%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL++++ ++G+RY+EV+R+ +++ ++ GG+ + H + +
Sbjct: 228 DLALRKHKHHLGQRYIEVYRASGKDFL--------NIAGGNNTEAQAFLSRHSDSGNQV- 278
Query: 106 HTGILRLRGLPFSAGKDDIMDFFK------DFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP++ + +++FF+ + + ++ I +DGR TG+AFV FAN
Sbjct: 279 ---IVRMRGLPYTCTAEQVLEFFRQGEQSVEVLDGDEGILFVHQADGRATGDAFVLFAND 335
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+D+ A++K R ++G+RYIELF S+ E+ + L+R
Sbjct: 336 DDATRALSKHRESIGTRYIELFKSTTAEVQQVLNR 370
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAKDR 170
++GLPF+ DI+ FF+ + + + SDGR TGEA++ F + +E +A ++R
Sbjct: 567 IKGLPFNVQVADILAFFEGIYEMQPDVQVQRGSDGRLTGEAYITFGSRSEAERAITERNR 626
Query: 171 MTLGSRYIELF 181
+G+R++E+F
Sbjct: 627 KVIGNRFVEMF 637
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 101 KDSAV-HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
KD AV ++R RGLP+ + DI FF+ ++ N GR GEA + F +
Sbjct: 173 KDEAVDEECVIRARGLPWQSSDQDIARFFQGLNIA--------NQQGRRNGEALIRFESK 224
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSS 184
E A+ K + LG RYIE++ +S
Sbjct: 225 EHRDLALRKHKHHLGQRYIEVYRAS 249
>gi|300795130|ref|NP_001179931.1| epithelial splicing regulatory protein 1 [Bos taurus]
gi|296480439|tpg|DAA22554.1| TPA: epithelial splicing regulatory protein 1 [Bos taurus]
Length = 677
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGSRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNIRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ E+
Sbjct: 286 HKHHMGSRYIEVYKATGED 304
>gi|338728566|ref|XP_003365697.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Equus caballus]
Length = 659
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|345308102|ref|XP_001505380.2| PREDICTED: epithelial splicing regulatory protein 2-like
[Ornithorhynchus anatinus]
Length = 729
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 4/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+R++ +G+RY+E+FRS E + + +S
Sbjct: 380 LLFVRYPDGRPTGDAFALFACEDAAQSALRRHKGILGKRYIELFRSTAAEVQQVLNRYLS 439
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ + + +RLRGLP++AG DD++DF + + +
Sbjct: 440 APLIPTLPPPLLPVLPPPYALAGSCVRDCVRLRGLPYTAGIDDVLDFMGEATADIRPHGV 499
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +AE ++ A + + + RY+E+FP S +EM L G
Sbjct: 500 HMVLNQQGRPSGDAFIQMKSAERAQVAAQRCHKKMMKERYVEVFPCSGDEMSLVLMGG 557
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D AL+R++ +MG RY+EV+++ E+ K +NEV+ ++
Sbjct: 301 DLALERHKHHMGSRYIEVYKATGDEFLKIAGGTSNEVAQFLS----------------RE 344
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+RLRGLPFSA DD++ F + + DGRPTG+AF FA
Sbjct: 345 NQV---IIRLRGLPFSATPDDVLGFLGPECPVTGGPEGLLFVRYPDGRPTGDAFALFACE 401
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ +++A+ + + LG RYIELF S+ E+ + L+R
Sbjct: 402 DAAQSALRRHKGILGKRYIELFRSTAAEVQQVLNR 436
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + I FF +++ + + +N+ GR GEA V F N++ A+ +
Sbjct: 247 VIRARGLPWQSSDQHIARFFIGLNIAKGGVALCLNAQGRRNGEALVRFVNSDHRDLALER 306
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ +E
Sbjct: 307 HKHHMGSRYIEVYKATGDE 325
>gi|327276493|ref|XP_003223004.1| PREDICTED: epithelial splicing regulatory protein 2-like [Anolis
carolinensis]
Length = 714
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D AL+R++ +MG RY+EV+++ +E+ K +
Sbjct: 261 LCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLK--------I 312
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + K++ V I+R+RGLPF+A +D++ F ++ +
Sbjct: 313 AGGTSNEV-----AQFLSKENQV---IIRMRGLPFTATPEDVLGFLGPECPVTGEKEGLL 364
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 365 FVKYPDGRPTGDAFVLFACEEFAQNALKKHKEILGKRYIELFRSTAAEVQQVLNR 419
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 4/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + +S
Sbjct: 363 LLFVKYPDGRPTGDAFVLFACEEFAQNALKKHKEILGKRYIELFRSTAAEVQQVLNRYMS 422
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ I + +RLRGLP++AG DDI++F D + +
Sbjct: 423 TPLIPTLPTPIIPVIPPPYTIAAGSARDCVRLRGLPYTAGIDDILEFMGDATGDIKPHGV 482
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GR +G+AF++ +++ + K + + RY+E+F S EEM+ L G
Sbjct: 483 HMVLNQQGRLSGDAFIQMKSSDRAYLVAQKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 540
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + + +N+ GR GEA V F N+E A+ +
Sbjct: 230 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 289
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ EE
Sbjct: 290 HKHHMGSRYIEVYKATGEE 308
>gi|326927219|ref|XP_003209790.1| PREDICTED: epithelial splicing regulatory protein 2-like [Meleagris
gallopavo]
Length = 701
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D AL+R++ +MG RY+EV+++ +E+ K +
Sbjct: 258 LCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLK--------I 309
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + K++ V I+R+RGLPF+A ++D++ F ++ +
Sbjct: 310 AGGTSNEV-----AQFLSKENQV---IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLL 361
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV F+ E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 362 FVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + +S
Sbjct: 360 LLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNRYMS 419
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ I + +RLRGLP++AG DDI+DF D + +
Sbjct: 420 TPLIPTLPTPIIPVIPPPYTIATGSIRDCVRLRGLPYTAGIDDILDFMGDATADIKPHGV 479
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + A + + RY+E+F S EEM+ L G
Sbjct: 480 HMVLNQQGRPSGDAFIQMKSADKAFMVAQKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 537
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + + +N+ GR GEA V F N+E A+ +
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 286
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ EE
Sbjct: 287 HKHHMGSRYIEVYKATGEE 305
>gi|332248945|ref|XP_003273625.1| PREDICTED: RNA-binding protein 12-like isoform 3 [Nomascus
leucogenys]
Length = 1466
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 626
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKLM 930
>gi|335286312|ref|XP_003125612.2| PREDICTED: epithelial splicing regulatory protein 1-like isoform 1
[Sus scrofa]
Length = 681
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 323
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA
Sbjct: 324 NQV---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 5/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ +RLRGLP++A +DI+DF +F + +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVTPTNVRDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGV 477
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 478 HMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|426236209|ref|XP_004012064.1| PREDICTED: epithelial splicing regulatory protein 1 [Ovis aries]
Length = 761
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 25/179 (13%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANE 78
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +NE
Sbjct: 340 ALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGSRYIEVYKATGEDFLKIAGGTSNE 399
Query: 79 VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSE 135
V+ K++ V I+R+RGLPF+A D+++ FF +
Sbjct: 400 VAQFLS----------------KENQV---IVRMRGLPFTATADEVVAFFGQHCPITGGK 440
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ I DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 441 EGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 499
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 443 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 501
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 502 SAPLIPLPTPPIIPVLPQQFVPPTNIRD----------CIRLRGLPYAATIEDILDFLGE 551
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 552 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 611
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 612 MNFVLMGG 619
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 310 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 369
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ E+
Sbjct: 370 HKHHMGSRYIEVYKATGED 388
>gi|410987483|ref|XP_004000030.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Felis catus]
Length = 604
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|301782433|ref|XP_002926629.1| PREDICTED: epithelial splicing regulatory protein 1-like
[Ailuropoda melanoleuca]
Length = 677
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|281352677|gb|EFB28261.1| hypothetical protein PANDA_016305 [Ailuropoda melanoleuca]
Length = 656
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|71895579|ref|NP_001025737.1| epithelial splicing regulatory protein 2 [Gallus gallus]
gi|75571416|sp|Q5ZLR4.1|ESRP2_CHICK RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|53128733|emb|CAG31329.1| hypothetical protein RCJMB04_5c3 [Gallus gallus]
Length = 701
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D AL+R++ +MG RY+EV+++ +E+ K +
Sbjct: 258 LCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLK--------I 309
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + K++ V I+R+RGLPF+A ++D++ F ++ +
Sbjct: 310 AGGTSNEV-----AQFLSKENQV---IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLL 361
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV F+ E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 362 FVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + +S
Sbjct: 360 LLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNRYMS 419
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ I + +RLRGLP++AG DDI+DF D + +
Sbjct: 420 TPLIPTLPTPIIPVIPPPYTIATGSIRDCVRLRGLPYTAGIDDILDFMGDATADIKPHGV 479
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + A + + RY+E+F S EEM+ L G
Sbjct: 480 HMVLNQQGRPSGDAFIQMKSADKAFMVAQKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 537
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + + +N+ GR GEA V F N+E A+ +
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 286
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ EE
Sbjct: 287 HKHHMGSRYIEVYKATGEE 305
>gi|431894345|gb|ELK04145.1| RNA-binding protein 12 [Pteropus alecto]
Length = 899
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 824 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 883
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 884 LNDR-PIGSRKVKL 896
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG S+ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMILNPEGDVSSTKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 170
+ E+++H+ ++++G+ G+A A +++ A+ R
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALCRNAQCRNARYRNAQCR 606
>gi|410987481|ref|XP_004000029.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Felis catus]
Length = 659
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|410987479|ref|XP_004000028.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Felis catus]
Length = 677
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|194214972|ref|XP_001915056.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Equus caballus]
Length = 677
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|338728568|ref|XP_003365698.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Equus caballus]
Length = 604
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 94/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 257 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 308
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + K++ V I+R+RGLPF+A D+++ FF ++ I
Sbjct: 309 AGGTSNEV-----AQFLSKENQV---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGIL 360
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|403281161|ref|XP_003932066.1| PREDICTED: RNA-binding protein 12 [Saimiri boliviensis boliviensis]
Length = 1465
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A + G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGPAHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 626
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 856 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 915
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 916 LNDR-PIGSRKVKLM 929
>gi|449277356|gb|EMC85572.1| Epithelial splicing regulatory protein 2 [Columba livia]
Length = 721
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 25/178 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEV 79
L ++ + GEA Q D AL+R++ +MG RY+EV+++ +E+ K +NEV
Sbjct: 273 LCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLKIAGGTSNEV 332
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSED 136
+ K++ V I+R+RGLPF+A ++D++ F ++
Sbjct: 333 AQFLS----------------KENQV---IIRMRGLPFTATQEDVLGFLGPECPVTGGKE 373
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AFV F+ E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 374 GLLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNR 431
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + +S
Sbjct: 375 LLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNRYMS 434
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ I + +RLRGLP++AG DDI++F D + +
Sbjct: 435 TPLIPTLPTPIIPVIPPPYTIATGSIRDCVRLRGLPYTAGIDDILEFMGDATGDIKPHGV 494
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + A + + RY+E+F S EEM+ L G
Sbjct: 495 HMVLNQQGRPSGDAFIQMKSADKAFMVAQKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 552
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + + +N+ GR GEA V F N+E A+ +
Sbjct: 242 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 301
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ EE
Sbjct: 302 HKHHMGSRYIEVYKATGEE 320
>gi|335286314|ref|XP_003355068.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 2
[Sus scrofa]
Length = 608
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 5/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ +RLRGLP++A +DI+DF +F + +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVTPTNVRDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGV 477
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 478 HMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|410953920|ref|XP_003983616.1| PREDICTED: RNA-binding protein 12-like isoform 1 [Felis catus]
Length = 1482
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG S+ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMMLNPEGDVSSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 626
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 873 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 932
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 933 LNDR-PIGSRKVKL 945
>gi|426391523|ref|XP_004062122.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12 [Gorilla
gorilla gorilla]
Length = 1474
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 367 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 426
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 427 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 486
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 487 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 522
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 314 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 371
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 372 RMLMIQRYVEVSPATERQWVAA 393
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 461 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 516
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 517 GMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQFLEGI 575
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 576 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 634
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 865 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 924
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 925 LNDR-PIGSRKVKLM 938
>gi|351712921|gb|EHB15840.1| Heterogeneous nuclear ribonucleoprotein H2 [Heterocephalus glaber]
Length = 416
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + + F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQN---GTAGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNS 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + + + ++ GR TGEAFV+FA+ E ++ A+ K + +G R++E+F SS E+
Sbjct: 132 SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRHVEIFKSSRAEV 191
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTAGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>gi|345793292|ref|XP_544182.3| PREDICTED: epithelial splicing regulatory protein 1 [Canis lupus
familiaris]
Length = 764
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K ++
Sbjct: 339 ALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNE 398
Query: 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSI 138
V + K++ V I+R+RGLPF+A D+++ FF ++ I
Sbjct: 399 V-------------AQFLSKENQV---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGI 442
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 443 LFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 498
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 442 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 500
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 501 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 550
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 551 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 610
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 611 MNFVLMGG 618
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 309 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 368
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 369 HKHHMGTRYIEVYKATGED 387
>gi|91094511|ref|XP_971832.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
(hnRNP H) [Tribolium castaneum]
gi|270000730|gb|EEZ97177.1| hypothetical protein TcasGA2_TC004364 [Tribolium castaneum]
Length = 379
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 20/161 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF ++ AL+++R+++G RY+EVF+ + E I RS
Sbjct: 53 SGEAFVEFESEDDLNSALRKDREHIGSRYIEVFKVNKAEMDWVIK------------RSG 100
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P +D+G +RLRGLPF K++I FF + + I + + GR +GE
Sbjct: 101 PTYGVNDDG--------CVRLRGLPFGCSKEEIAQFFTGLEIVPNGITLLTDYSGRSSGE 152
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
A+V+F N E ++ A+ K R +G RYIE+F SS E++ L
Sbjct: 153 AYVQFVNKEVAEKALLKHREKIGHRYIEIFRSSLSEVNSVL 193
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I++LRGLP+SA +DI+ FFK+ + + IH+T + +GRP+GEAFVEF + +D +A+
Sbjct: 11 IVKLRGLPWSATTEDILKFFKNCKVFNGKLGIHMTSSREGRPSGEAFVEFESEDDLNSAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
KDR +GSRYIE+F + EMD + R
Sbjct: 71 RKDREHIGSRYIEVFKVNKAEMDWVIKR 98
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 5/106 (4%)
Query: 80 SDVRGG-SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
SD RGG SP+ ++++++ D +H + +RGLPF A DI DFFK V + ++
Sbjct: 261 SDSRGGRSPYEIDSWSETNNQTGDRTMH--CVHMRGLPFKATAADITDFFKPIVPT--NV 316
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+ + +GR +GEA VEFA+ ED+ AM+KD+ + RYIELF +S
Sbjct: 317 KLLQDHNGRASGEADVEFASHEDAMRAMSKDKGHMQHRYIELFLNS 362
>gi|359063387|ref|XP_002685850.2| PREDICTED: epithelial splicing regulatory protein 1 [Bos taurus]
Length = 1157
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 25/179 (13%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANE 78
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +NE
Sbjct: 256 ALCLNAQGQRNGEALVRFVSEEHRDLALQRHKHHMGSRYIEVYKATGEDFLKIAGGTSNE 315
Query: 79 VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSE 135
V+ K++ V I+R+RGLPF+A D+++ FF +
Sbjct: 316 VAQFLS----------------KENQV---IVRMRGLPFTATADEVVAFFGQHCPITGGK 356
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ I DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 357 EGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVL-NRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP+ A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNIRD----------CIRLRGLPYVATTEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ G+ GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSLDQDIARFFKGLNIAKGGAALCLNAQGQRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ E+
Sbjct: 286 HKHHMGSRYIEVYKATGED 304
>gi|74136241|ref|NP_001028012.1| RNA-binding protein 12 [Macaca mulatta]
gi|30173333|sp|Q8SQ27.1|RBM12_MACMU RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|19070196|gb|AAL83753.1| SWAN [Macaca mulatta]
gi|355563178|gb|EHH19740.1| RNA-binding motif protein 12 [Macaca mulatta]
gi|355784534|gb|EHH65385.1| RNA-binding motif protein 12 [Macaca fascicularis]
gi|380808606|gb|AFE76178.1| RNA-binding protein 12 [Macaca mulatta]
gi|380808608|gb|AFE76179.1| RNA-binding protein 12 [Macaca mulatta]
gi|384944626|gb|AFI35918.1| RNA-binding protein 12 [Macaca mulatta]
gi|384944628|gb|AFI35919.1| RNA-binding protein 12 [Macaca mulatta]
Length = 932
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQSHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 622
Query: 187 EMDE 190
+M E
Sbjct: 623 DMRE 626
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKL 929
>gi|50949507|emb|CAH10603.1| hypothetical protein [Homo sapiens]
Length = 954
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 381 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 440
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 441 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 500
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 501 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 536
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 81
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 82 TGGTIKGSKVTLLLSSKTEMQNMIELSR 109
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 328 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 385
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 386 RMLMIQRYVEVSPATERQWVAA 407
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 879 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 938
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 939 LNDR-PIGSRKVKL 951
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 475 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 534
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 535 KIDMIRKRLQNFSYDQR---------EMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 584
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E
Sbjct: 585 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 644
Query: 187 EMDE 190
+M E
Sbjct: 645 DMRE 648
>gi|410912184|ref|XP_003969570.1| PREDICTED: epithelial splicing regulatory protein 2-like [Takifugu
rubripes]
Length = 740
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 25/178 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEV 79
L ++ + GEA P D AL+R++ +MG RY+EV+++ +E+ K +NEV
Sbjct: 256 LCLNAQGRRNGEALVRFINPEHRDLALERHKHHMGNRYIEVYKATGEEFLKIAGGTSNEV 315
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF---KDFVLSED 136
+ K++ V I+R+RGLPF+A +++ F +
Sbjct: 316 TQFLS----------------KENQV---IIRMRGLPFTATPQEVLSFIGPESPVTDGAE 356
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AFV F+ E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 357 GLLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 95/182 (52%), Gaps = 8/182 (4%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI----A 76
+LFV + + + TG+AF + AL++++Q +G+RY+E+FRS E + + +
Sbjct: 358 LLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNRYMS 417
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LS 134
+ SP + + ++ +RLRGLP++AG +DI++F + +
Sbjct: 418 TPLISTLPPSPIVPVSVLTTPPFLPTASTTRDCVRLRGLPYTAGIEDILEFMGEHTVDIK 477
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+H+ +N GRP+G+AF++ + + + A + T+ RY+E+F S EEM L
Sbjct: 478 PHGVHMVLNQQGRPSGDAFIQLKSPDKAFLVAQKCHKKTMKDRYVEVFQCSTEEMSIVLM 537
Query: 194 RG 195
G
Sbjct: 538 GG 539
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + + +N+ GR GEA V F N E A+ +
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLTIAKGGVALCLNAQGRRNGEALVRFINPEHRDLALER 284
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ EE
Sbjct: 285 HKHHMGNRYIEVYKATGEE 303
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++R++GLP++ G DI+ FF+ + L D++ I N G+ +GEA + F + E +K A+A
Sbjct: 663 ALVRMQGLPYNTGVKDILSFFQGYQLQPDAVLILYNFSGQCSGEALITFPSEEMAKQAVA 722
Query: 168 K 168
+
Sbjct: 723 E 723
>gi|193636729|ref|XP_001950119.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Acyrthosiphon pisum]
Length = 440
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 19/170 (11%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84
+++ K + +A+ + + AL+++R+ MG RY++VF SKR E AI S +
Sbjct: 62 MNRKGKPSSQAYVEMESEESLKAALKKDREYMGNRYIKVFPSKRSEMEWAIKITGSTL-- 119
Query: 85 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 144
D+ ++ +R+RGLPF K++I++FF+ ++ D I I +NS
Sbjct: 120 -----------------DNELYDNCVRIRGLPFDYTKNEIVEFFQGLEITPDDITIVINS 162
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
GR EAFV+F N E+ + A+ K + RYIE+F SS E+ ++L R
Sbjct: 163 KGRRMKEAFVQFVNRENLEKALQKHMEKIRFRYIEVFRSSLVEIRKSLKR 212
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSE-----DSIHITMNSDGRPTGEAFVEFANAEDSK 163
++++ GL S DDI+ F ++ +H TMN G+P+ +A+VE + E K
Sbjct: 24 VVKMHGLSLSTTADDIIKFLNTLGEAKVKDGASGVHFTMNRKGKPSSQAYVEMESEESLK 83
Query: 164 AAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
AA+ KDR +G+RYI++FPS EM+ A+
Sbjct: 84 AALKKDREYMGNRYIKVFPSKRSEMEWAI 112
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ ++GLP A K+DI FF+ L +IH N++ +P GEA VEF N ED+ AM+K
Sbjct: 283 VVHMKGLPLKANKNDIAKFFEP--LKPVNIHFIFNNNNQPYGEANVEFGNIEDAVQAMSK 340
Query: 169 DRMTLGSRYIELF 181
++ + RYIELF
Sbjct: 341 NKTFMEHRYIELF 353
>gi|20521648|dbj|BAA34485.2| KIAA0765 protein [Homo sapiens]
Length = 952
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 379 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 438
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 439 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 498
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 499 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 534
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 24 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 79
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 80 TGGTIKGSKVTLLLSSKTEMQNMIELSR 107
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 326 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 383
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 384 RMLMIQRYVEVSPATERQWVAA 405
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 877 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 936
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 937 LNDR-PIGSRKVKL 949
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 473 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 532
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 533 KIDMIRKRLQNFSYDQR---------EMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 582
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E
Sbjct: 583 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 642
Query: 187 EMDE 190
+M E
Sbjct: 643 DMRE 646
>gi|354477974|ref|XP_003501192.1| PREDICTED: RNA-binding protein 12 [Cricetulus griseus]
Length = 1463
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGYCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
H + P GK I++++ +PF+ D+I+DFF + + S+ + N G
Sbjct: 836 HIAGPPGFGASSGKPGPT---IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGM 892
Query: 148 PTGEAFVEFANAEDSKAAMA--KDRMTLGSRYIELF 181
PTGEA V F + +++ AA+ DR +GSR ++L
Sbjct: 893 PTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKLM 927
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG S+ + +PFS K D++ F +
Sbjct: 509 GMLEKIDMIRKRLQNFSYDQREMVLNPEGDVSSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
+ E ++H+ ++++G+ G+A V+F +D++ + R L R
Sbjct: 568 PVDESAVHVLVDNNGQGLGQALVQFKTEDDARKSEHLHRKKLNGR 612
>gi|21740240|emb|CAD39131.1| hypothetical protein [Homo sapiens]
Length = 663
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 90 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 149
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 150 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 209
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 210 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 245
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 37 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 94
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 95 RMLMIQRYVEVSPATERQWVAA 116
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 184 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 239
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 240 GMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQFLEGI 298
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 299 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 357
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 588 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 647
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 648 LNDR-PIGSRKVKL 660
>gi|284519716|ref|NP_001165217.1| RNA-binding protein 12 [Equus caballus]
Length = 928
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS + K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPNGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG S+ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVSSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
F + + E+++H+ ++S+G+ G+A V+F + +D++ + R L R
Sbjct: 563 FLEGIPVDENAVHVLVDSNGQGLGQALVQFKSEDDARKSERLHRKKLNGR 612
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 853 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 912
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 913 LNDR-PIGSRKVKL 925
>gi|334326246|ref|XP_001379501.2| PREDICTED: epithelial splicing regulatory protein 1 [Monodelphis
domestica]
Length = 677
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 280 DLALQRHKHHMGNRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 323
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 324 NQV---IVRMRGLPFTATAEEVLAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 418
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSI 138
P I + V I RLRGLP++A +DI++F +F + +
Sbjct: 419 TPLIPLPTPPIIPVLPQQFVTPTNVRDCI-RLRGLPYAATIEDILEFLGEFSTAIQTHGV 477
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 478 HMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGNRYIEVYKATGED 304
>gi|12053991|emb|CAC20441.1| RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKL 929
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ R L R + + E
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKTERLHRKKLNGREAFVHVVTLE 622
Query: 187 EMDE 190
+M E
Sbjct: 623 DMRE 626
>gi|417413254|gb|JAA52964.1| Putative rna binding protein rbm12/swan, partial [Desmodus
rotundus]
Length = 960
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 381 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQK 440
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 441 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 500
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 501 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 536
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 81
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 82 TGGTIKGSKVTLLLSSKTEMQNMIELSR 109
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 328 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 385
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 386 RMLMIQRYVEVSPATERQWVAA 407
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 475 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 534
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG S+ + +PFS K D++
Sbjct: 535 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVSSTKV-CAHITNIPFSITKMDVLQ 584
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R
Sbjct: 585 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 634
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 885 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 944
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 945 LNDR-PIGSRKVKL 957
>gi|351702538|gb|EHB05457.1| RNA-binding protein 12 [Heterocephalus glaber]
Length = 850
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVE+ + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEISPATERQWVAAGGHITFKQSMGPSGQSHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAAENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEISPATERQWVAA 385
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 509 GMLEKIDTIRKRLQNFSYDQREMVLNPEGDVNSAKV-CAHITNIPFSITKMDVLQFLEGI 567
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 568 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSEHLHRKKLNGREAFVHVVTLEDMRE 626
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 775 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 834
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 835 LNDR-PIGSRKVKL 847
>gi|19923345|ref|NP_006038.2| RNA-binding protein 12 [Homo sapiens]
gi|23510462|ref|NP_690051.1| RNA-binding protein 12 [Homo sapiens]
gi|311893287|ref|NP_001185767.1| RNA-binding protein 12 [Homo sapiens]
gi|312032348|ref|NP_001185769.1| RNA-binding protein 12 [Homo sapiens]
gi|353411938|ref|NP_001238775.1| RNA-binding protein 12 [Pan troglodytes]
gi|397523818|ref|XP_003831915.1| PREDICTED: RNA-binding protein 12 [Pan paniscus]
gi|30173387|sp|Q9NTZ6.1|RBM12_HUMAN RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|15215375|gb|AAH12787.1| RNA binding motif protein 12 [Homo sapiens]
gi|15559252|gb|AAH13981.1| RNA binding motif protein 12 [Homo sapiens]
gi|19070194|gb|AAL83752.1| SWAN [Homo sapiens]
gi|19070200|gb|AAL83755.1| SWAN [Homo sapiens]
gi|21666372|gb|AAM73682.1| swan [Homo sapiens]
gi|119596588|gb|EAW76182.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|119596590|gb|EAW76184.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|119596594|gb|EAW76188.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|123993635|gb|ABM84419.1| RNA binding motif protein 12 [synthetic construct]
gi|123999855|gb|ABM87436.1| RNA binding motif protein 12 [synthetic construct]
gi|168278717|dbj|BAG11238.1| RNA binding motif protein 12 [synthetic construct]
gi|193787298|dbj|BAG52504.1| unnamed protein product [Homo sapiens]
gi|410216986|gb|JAA05712.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410216988|gb|JAA05713.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410260650|gb|JAA18291.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410260652|gb|JAA18292.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410297724|gb|JAA27462.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410297726|gb|JAA27463.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410355577|gb|JAA44392.1| RNA binding motif protein 12 [Pan troglodytes]
Length = 932
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKL 929
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 622
Query: 187 EMDE 190
+M E
Sbjct: 623 DMRE 626
>gi|284520924|ref|NP_001165219.1| RNA-binding protein 12 [Canis lupus familiaris]
Length = 923
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG S+ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVSSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 622
Query: 187 EMDE 190
+M E
Sbjct: 623 DMRE 626
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 848 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 907
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 908 LNDR-PIGSRKVKL 920
>gi|410905415|ref|XP_003966187.1| PREDICTED: epithelial splicing regulatory protein 1-like [Takifugu
rubripes]
Length = 741
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 25/158 (15%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + D+
Sbjct: 289 DLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEVAMFLSREDQI----- 335
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---------FVLSEDSIHITMNSDGRPTGEAFVEF 156
I+R+RGLPF+A + ++ FF +D I DGRPTG+AFV F
Sbjct: 336 ---IVRMRGLPFTATHEQVLSFFSPGEGLKETCPISGGQDGILFVRYPDGRPTGDAFVLF 392
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
A E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 393 ACEEHAQCALRKHKEILGRRYIELFKSTAAEVQQVLNR 430
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 27/193 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +GRRY+E+F+S E + + N S
Sbjct: 374 ILFVRYPDGRPTGDAFVLFACEEHAQCALRKHKEILGRRYIELFKSTAAEV-QQVLNRYS 432
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHT--------GILRLRGLPFSAGKDDIMDFFKDFV 132
IP A + AV LRLRGLP++A +DI++F +F
Sbjct: 433 SAP------LIPVAPAPLVSVLPAVSLLPPPGGMRDCLRLRGLPYTASIEDILNFLGEFT 486
Query: 133 --LSEDSIHITMNSDGRPTGEAFVEFANAEDS--------KAAMAKDRMTLGSRYIELFP 182
+ + +H+ +N GRP+G+ F++ + E + K M R + SRY+E+FP
Sbjct: 487 QDVRQHGVHMVLNQQGRPSGDCFIQMTSLERALQASQRLHKQVMFSQRGS-NSRYVEVFP 545
Query: 183 SSHEEMDEALSRG 195
S EEM L G
Sbjct: 546 CSAEEMGLVLMGG 558
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FF+ +++ + + +N+ GR GEA V F N E A+ +
Sbjct: 235 VIRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQGRRNGEALVRFINEEHRDLALQR 294
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 295 HKHHMGNRYIEVYKATGED 313
>gi|332248953|ref|XP_003273629.1| PREDICTED: RNA-binding protein 12-like isoform 7 [Nomascus
leucogenys]
Length = 932
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKL 929
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
>gi|194387896|dbj|BAG61361.1| unnamed protein product [Homo sapiens]
Length = 731
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 158 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 217
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 218 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 277
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 278 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 313
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 105 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 162
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 163 RMLMIQRYVEVSPATERQWVAA 184
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 252 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 311
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 312 KIDMIRKRLQNFSYDQR---------EMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 361
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E
Sbjct: 362 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 421
Query: 187 EMDE 190
+M E
Sbjct: 422 DMGE 425
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 656 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 715
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 716 LNDR-PIGSRKVKL 728
>gi|37360080|dbj|BAC98018.1| mKIAA0765 protein [Mus musculus]
Length = 569
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 270 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQK 329
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 330 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 389
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 390 RNDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 425
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 217 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 274
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 275 RMLMIQRYVEVSPATERQWVAA 296
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 364 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK----K 419
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG+ S+ + +PFS K D++ F +
Sbjct: 420 GMLEKIDMIRKRLQNFSYDQRELVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQFLEGI 478
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
+ E+++H+ ++++G+ G+A V+F +D+ + R L R
Sbjct: 479 PVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGR 523
>gi|432852904|ref|XP_004067443.1| PREDICTED: epithelial splicing regulatory protein 2-like [Oryzias
latipes]
Length = 695
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 10/182 (5%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + V AL++++Q +G+RY+E+FRS E + + +S
Sbjct: 315 LLFVKYPDGRPTGDAFVLFSCEEYVQNALKKHKQILGKRYIELFRSTAAEVQQVLNRYMS 374
Query: 81 ----DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LS 134
SP +P S + +RLRGLP++AG +DI++F + +
Sbjct: 375 TPLISTLPASP--IVPVLASQPFLPAATSTRDCVRLRGLPYTAGIEDILEFMGEHTVDIK 432
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+H+ +N GRP+G+AF++ +A+ + A + T+ RY+E+F S EEM L
Sbjct: 433 PHGVHMVLNQQGRPSGDAFIQMKSADRAFMVAQKCHKKTMKDRYVEVFQCSTEEMSIVLM 492
Query: 194 RG 195
G
Sbjct: 493 GG 494
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D AL+R++ +MG RY+EV+++ +E+ K +NEV+ K+
Sbjct: 236 DLALERHKHHMGCRYIEVYKATGEEFLKIAGGTSNEVAQFLS----------------KE 279
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFF---KDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A +++ F + + DGRPTG+AFV F+
Sbjct: 280 NQV---IIRMRGLPFTATSQEVLSFLGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCE 336
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E + A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 337 EYVQNALKKHKQILGKRYIELFRSTAAEVQQVLNR 371
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + + +N+ GR GEA V F ++E A+ +
Sbjct: 182 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFIDSEHRDLALER 241
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 242 HKHHMGCRYIEVYKATGEE 260
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE-----YYKAIANEVS 80
H A + YP Q + NM Y + S Y+ A V+
Sbjct: 543 HPQTTVASPAHTLAYYPPQPHLYM-----NMNMNYTAYYPSPPVSPSTVGYFAAPPGAVA 597
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
SPH P A S + A ++R++GLP++ G DI+ FF+ + L D++ I
Sbjct: 598 AAVAASPH---PGAASTVLSQPGA----LVRMQGLPYNTGVKDILSFFQGYQLQPDAVVI 650
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAK 168
N G+ +GEA + F + + ++ A+A+
Sbjct: 651 LYNFSGQCSGEALITFPSEDLARRAVAE 678
>gi|444729174|gb|ELW69601.1| RNA-binding protein 12 [Tupaia chinensis]
Length = 932
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQTHPPSQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKL 929
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMMLNTEGDVNSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQAVVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 622
Query: 187 EMDE 190
+M E
Sbjct: 623 DMRE 626
>gi|47225436|emb|CAG11919.1| unnamed protein product [Tetraodon nigroviridis]
Length = 751
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 25/158 (15%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + D+
Sbjct: 307 DLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEVAMFLSREDQI----- 353
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---------FVLSEDSIHITMNSDGRPTGEAFVEF 156
I+R+RGLPF+A + ++ FF +D I DGRPTG+AFV F
Sbjct: 354 ---IIRMRGLPFTATHEQVLSFFSPGEGLKGTCPVSGGKDGILFVRYPDGRPTGDAFVLF 410
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
A E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 411 ACEEHAQCALRKHKEILGRRYIELFKSTAAEVQQVLNR 448
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 43/209 (20%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +GRRY+E+F+S E + + S
Sbjct: 392 ILFVRYPDGRPTGDAFVLFACEEHAQCALRKHKEILGRRYIELFKSTAAEVQQVLNRYSS 451
Query: 81 -DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDS 137
+ +P + + LRLRGLP++A +DI++F +F +
Sbjct: 452 APLIPVAPAPLVSVLPTVSLLPPPGGLRDCLRLRGLPYTAIIEDILNFLGEFTRDVRPHG 511
Query: 138 IHITMNS------------------------------DGRPTGEAFVEFANAEDS----- 162
+H+ +N GRP+G+ F++ + E +
Sbjct: 512 VHMVLNQQVRAGTYRAQGPTPPGARLRRHPPWSASCLQGRPSGDCFIQMTSVEQALQAAQ 571
Query: 163 ---KAAMAKDRMTLGSRYIELFPSSHEEM 188
K M R + SRY+E+FP S EEM
Sbjct: 572 QLHKQVMFSQRGS-NSRYVEVFPCSAEEM 599
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FF+ +++ + + +N+ GR GEA V F + E A+ +
Sbjct: 253 VIRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQGRRNGEALVRFVSEEHRDLALQR 312
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 313 HKHHMGNRYIEVYKATGED 331
>gi|229368727|gb|ACQ63010.1| RNA binding motif protein 12, isoform 2 (predicted) [Dasypus
novemcinctus]
Length = 900
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
F + + E+S+H+ ++++G+ G+A V+F N +D++ + R L R
Sbjct: 563 FLEGIPVDENSVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 825 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 884
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 885 LNDR-PIGSRKVKL 897
>gi|410914042|ref|XP_003970497.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Takifugu
rubripes]
Length = 406
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 19/157 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF + + A++++R+ MG RYVEVF+S E + + + G
Sbjct: 49 SGEAFVEMESEEDLKVAVKKDRETMGHRYVEVFKSNNVEMDWVMKHTGPNCPG------- 101
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
G++RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 102 ------------TAGDGLIRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGE 149
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
AFV+FA+ + ++ A+ K + +G RYIE+F SS E+
Sbjct: 150 AFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEV 186
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 32/193 (16%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE---YYKAIANE 78
L V + TGEAF + AL+++++ +G RY+E+F+S R E +Y+
Sbjct: 137 TLPVDIQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPQRKP 196
Query: 79 VSDVR--------GGSPHRSIPRAKSHDE------------------GKDSAVHTG-ILR 111
+ R GG + + R S+D G TG +
Sbjct: 197 MGMQRPGPYDRPSGGRGYNMMGRGGSYDRMRRGGYGGGYSDGRYGDGGSSFQSTTGHCVH 256
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RGLP+ A + DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+KD+
Sbjct: 257 MRGLPYRATETDIYNFFSP--LNPVRVHIEVGPDGRVTGEADVEFATHEDAVAAMSKDKA 314
Query: 172 TLGSRYIELFPSS 184
+ RY+ELF +S
Sbjct: 315 NMQHRYVELFLNS 327
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S D++ FF + + +IH T +GRP+GEAFVE + ED K A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKIINNGGAIHFTYTREGRPSGEAFVEMESEEDLKVAV 66
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD +
Sbjct: 67 KKDRETMGHRYVEVFKSNNVEMDWVM 92
>gi|345326895|ref|XP_001507064.2| PREDICTED: epithelial splicing regulatory protein 1, partial
[Ornithorhynchus anatinus]
Length = 605
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 208 DLALQRHKHHMGNRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 251
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A D++ FF ++ I DGRPTG+AFV FA
Sbjct: 252 NQV---IVRMRGLPFTATADEVSAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 308
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 309 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 343
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 287 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 345
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI++F +
Sbjct: 346 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILEFLGE 395
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 396 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 455
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 456 MNFVLMGG 463
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 154 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 213
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE++ ++ E+
Sbjct: 214 HKHHMGNRYIEVYKATGEDF 233
>gi|301762096|ref|XP_002916483.1| PREDICTED: RNA-binding protein 12-like [Ailuropoda melanoleuca]
gi|281346062|gb|EFB21646.1| hypothetical protein PANDA_004540 [Ailuropoda melanoleuca]
Length = 923
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG S+ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVSSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 848 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 907
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 908 LNDR-PIGSRKVKL 920
>gi|184185561|gb|ACC68959.1| RNA-binding protein 12 (predicted) [Rhinolophus ferrumequinum]
Length = 946
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEPGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+++ + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALSRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAVENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALSRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG S+ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVSSTKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 871 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 930
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 931 LNDR-PIGSRKVKL 943
>gi|197100361|ref|NP_001125474.1| RNA-binding protein 12 [Pongo abelii]
gi|75070796|sp|Q5RBM8.1|RBM12_PONAB RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12
gi|55728164|emb|CAH90832.1| hypothetical protein [Pongo abelii]
Length = 932
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 859 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 918
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR + L+
Sbjct: 919 LNDR-PIGSRKVNLY 932
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 622
Query: 187 EMDE 190
+M E
Sbjct: 623 DMRE 626
>gi|348526958|ref|XP_003450986.1| PREDICTED: epithelial splicing regulatory protein 1 [Oreochromis
niloticus]
Length = 738
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 25/158 (15%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
+ ALQR++ +MG RY+EV YKA ++ + GG+ H D+
Sbjct: 305 ELALQRHKHHMGNRYIEV--------YKATGDDFLKIAGGTSHEVAMFLSREDQI----- 351
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---------FVLSEDSIHITMNSDGRPTGEAFVEF 156
I+R+RGLPF+A + ++ FF +D I DGRPTG+AFV F
Sbjct: 352 ---IVRMRGLPFTATHEQVLAFFSPEDELKETCPVSGGKDGILFVRYPDGRPTGDAFVLF 408
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
A E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 409 ACEEHAQCALRKHKEILGKRYIELFKSTAAEVQQVLNR 446
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+F+S E + + S
Sbjct: 390 ILFVRYPDGRPTGDAFVLFACEEHAQCALRKHKEILGKRYIELFKSTAAEVQQVLNRYSS 449
Query: 81 -DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDS 137
+ +P +P + LRLRGLP++A +DI+ F +F +
Sbjct: 450 TPLISVAPAPLMPVLPTMSLLPPPGGVRDCLRLRGLPYTASIEDILTFLGEFTQDIRPHG 509
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM---------TLGSRYIELFPSSHEEM 188
+H+ +N GRP+G+ F++ +AE +A A R+ SRY+E+FP S EEM
Sbjct: 510 VHMVLNQQGRPSGDCFIQMTSAE--RALQASQRLHKHVMSSQRGANSRYVEVFPCSAEEM 567
Query: 189 DEALSRG 195
L G
Sbjct: 568 GLVLMGG 574
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FF+ +++ + + +N+ GR GEA V F + E + A+ +
Sbjct: 251 VIRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQGRRNGEALVRFVSEEHRELALQR 310
Query: 169 DRMTLGSRYIELF 181
+ +G+RYIE++
Sbjct: 311 HKHHMGNRYIEVY 323
>gi|26334977|dbj|BAC31189.1| unnamed protein product [Mus musculus]
Length = 500
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 243 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 294
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + K++ V I+R+RGLPF+A ++++ FF ++ I
Sbjct: 295 AGGTSNEV-----AQFLSKENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 346
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 347 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNR 401
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 212 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 271
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE++ ++ E+
Sbjct: 272 HKHHMGTRYIEVYKATGEDF 291
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 26/166 (15%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 345 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEVQQVL-NRFS 403
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 404 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 453
Query: 131 FV--LSEDSIHITMNSDGRPT-GEAFVEFANAEDSKAAMAKDRMTL 173
F + +H+ +N R G+ F + +++ R TL
Sbjct: 454 FSTDIRTHGVHMVLNHQVRGVIGKCVCSFLRP-SAPSSITAQRFTL 498
>gi|148673703|gb|EDL05650.1| RNA binding motif protein 35A, isoform CRA_b [Mus musculus]
Length = 604
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 257 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 308
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + K++ V I+R+RGLPF+A ++++ FF ++ I
Sbjct: 309 AGGTSNEV-----AQFLSKENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|302828822|ref|XP_002945978.1| splicing factor like protein [Volvox carteri f. nagariensis]
gi|300268793|gb|EFJ52973.1| splicing factor like protein [Volvox carteri f. nagariensis]
Length = 578
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 27/183 (14%)
Query: 18 DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIA 76
++ V+ + + TGE + L A+ + +RQ +G RY+EVF S + A +
Sbjct: 60 NVAQVVIGKRAGRSTGEGYVQLDSTSAAAEAIMKLHRQTLGHRYIEVFESTEADLATAKS 119
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVL 133
V +RG ++R RGLP++A D+++FF V
Sbjct: 120 LSVDRMRGF-----------------------VVRCRGLPYTATAQDVLNFFGSDAPVVR 156
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+ + T DGRPTGEAFVEF + + A+ K + ++G+RYIELF S+ +M +A+
Sbjct: 157 GIEGVVFTYAPDGRPTGEAFVEFQTEDAQREALKKHKESMGARYIELFVSTKVDMIQAIQ 216
Query: 194 RGR 196
+ R
Sbjct: 217 QNR 219
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF-ANAEDSKAAMA 167
+LRLRGLPFSAG++D+ FF F +++ I GR TGE +V+ + + ++A M
Sbjct: 37 VLRLRGLPFSAGEEDVRHFFSGFNVAQVVI---GKRAGRSTGEGYVQLDSTSAAAEAIMK 93
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALS 193
R TLG RYIE+F S+ ++ A S
Sbjct: 94 LHRQTLGHRYIEVFESTEADLATAKS 119
>gi|229462862|sp|Q3US41.2|ESRP1_MOUSE RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
Length = 680
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 279 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 322
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 323 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 379
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 380 EYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNR 414
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 358 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEV-QQVLNRFS 416
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 417 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 466
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EE
Sbjct: 467 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 526
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 527 MNFVLMGG 534
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 285 HKHHMGTRYIEVYKATGED 303
>gi|21618692|gb|AAH31468.1| RNA binding motif protein 35A [Mus musculus]
Length = 444
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 25/178 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEV 79
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +NEV
Sbjct: 97 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEV 156
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSED 136
+ K++ V I+R+RGLPF+A ++++ FF ++
Sbjct: 157 AQFLS----------------KENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKE 197
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
I DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 198 GILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNR 255
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 199 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEV-QQVLNRFS 257
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 258 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 307
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EE
Sbjct: 308 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 367
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 368 MNFVLMGG 375
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 66 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 126 HKHHMGTRYIEVYKATGED 144
>gi|147906713|ref|NP_001086923.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus laevis]
gi|50417963|gb|AAH77770.1| Hnrph2-prov protein [Xenopus laevis]
gi|84569955|gb|AAI10708.1| Hnrph2 protein [Xenopus laevis]
Length = 456
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + L I F++ + + +GEAF + L+++R MG RYVEVF+S
Sbjct: 33 CKIANGLSGI---HFIYTREGRPSGEAFVEFETEEDLKLGLKKDRATMGHRYVEVFKSNN 89
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 90 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 130
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 131 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 190
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D+I +FF + ++ IH +GRP+GEAFVEF ED K +
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEFETEEDLKLGL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 71 KKDRATMGHRYVEVFKSNNVEMDWVL 96
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A + DI FF L+ +HI + +DGR TGEA VEFA ED+ AAM+K
Sbjct: 278 CVHMRGLPYRATETDIYTFFSP--LNPVRVHIEIGADGRVTGEADVEFATHEDAVAAMSK 335
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 336 DKANMQHRYVELFLNS 351
>gi|165972311|ref|NP_918944.2| epithelial splicing regulatory protein 1 [Mus musculus]
Length = 681
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 323
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 324 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 381 EYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|148674224|gb|EDL06171.1| mCG5227, isoform CRA_a [Mus musculus]
gi|148674225|gb|EDL06172.1| mCG5227, isoform CRA_a [Mus musculus]
Length = 773
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG+ S+ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------ELVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
F + + E ++H+ ++++G+ G+A V+F +D+
Sbjct: 563 FLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDA 598
>gi|260819360|ref|XP_002605005.1| hypothetical protein BRAFLDRAFT_285603 [Branchiostoma floridae]
gi|229290334|gb|EEN61015.1| hypothetical protein BRAFLDRAFT_285603 [Branchiostoma floridae]
Length = 645
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 22/187 (11%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA------ 74
+LFV + N + TG+AF + AL ++++++G+RY+E+FRS E +
Sbjct: 349 ILFVRYANGRSTGDAFVLFETEAYAQLALAKHKESLGKRYIELFRSTAAEVQQVWNRYQQ 408
Query: 75 --IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
+ + + P ++I D +R+RGLP+ A DD++ F ++
Sbjct: 409 CPLIHTTPTMIPMLPQQAITCGSIRD----------CVRMRGLPYQATHDDVLAFLGEYA 458
Query: 133 --LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMD 189
+ + IH+ +NS G+P+G+ F++ + E ++ A K R +G RYIE+F S +EM+
Sbjct: 459 VYVRDHGIHMVLNSSGKPSGDCFIQMYSPEAARQAAEKCHRQYMGDRYIEVFQCSGDEMN 518
Query: 190 EALSRGR 196
L G+
Sbjct: 519 FVLMGGQ 525
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 18/173 (10%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84
++ + GEA D AL R++ ++G+RY+EV+++ +++ K V G
Sbjct: 248 LNPQGRRNGEALVRFASKEHRDLALLRHKHHIGQRYIEVYKATGEDFLK--------VAG 299
Query: 85 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHIT 141
G+ + + + DSA I+R+RGLP++A DI++FF E I
Sbjct: 300 GNANEATAFLR------DSAAEV-IVRMRGLPYTATAADILNFFGQSCPVAGGEKGILFV 352
Query: 142 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
++GR TG+AFV F ++ A+AK + +LG RYIELF S+ E+ + +R
Sbjct: 353 RYANGRSTGDAFVLFETEAYAQLALAKHKESLGKRYIELFRSTAAEVQQVWNR 405
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
ILR+RGLP+ + DI FF+ +++ + + +N GR GEA V FA+ E A+ +
Sbjct: 215 ILRVRGLPWQSSDQDIARFFRGLNITKGGVAVCLNPQGRRNGEALVRFASKEHRDLALLR 274
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ E+
Sbjct: 275 HKHHIGQRYIEVYKATGED 293
>gi|417412339|gb|JAA52559.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 697
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 300 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 346
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 347 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 403
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 404 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 435
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 379 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 437
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 438 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 487
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 488 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 547
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 548 MNFVLMGG 555
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 246 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 305
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 306 HKHHMGTRYIEVYKATGED 324
>gi|74183823|dbj|BAE24496.1| unnamed protein product [Mus musculus]
Length = 680
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 279 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 322
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 323 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 379
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 380 EYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNR 414
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 358 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEV-QQVLNRFS 416
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 417 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 466
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EE
Sbjct: 467 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 526
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 527 MNFVLMGG 534
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 285 HKHHMGTRYIEVYKATGED 303
>gi|395510177|ref|XP_003759357.1| PREDICTED: epithelial splicing regulatory protein 2, partial
[Sarcophilus harrisii]
Length = 470
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D AL+R++ +MG RY+EV+++ +E+ K +
Sbjct: 6 LCLNAQGRRNGEALVRFVDSEQRDLALERHKHHMGARYIEVYKASGEEFLK--------I 57
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ H D+ I+R+RGLPF+A D++ F + +
Sbjct: 58 AGGTSHEVAQFLSREDQV--------IIRMRGLPFTATPADVLAFLGPECPVTGGHEGLL 109
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AF FA E +++A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 110 FVRYPDGRPTGDAFALFACEELAQSALRKHKGILGKRYIELFRSTAAEVQQVLNR 164
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 6/179 (3%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + S
Sbjct: 108 LLFVRYPDGRPTGDAFALFACEELAQSALRKHKGILGKRYIELFRSTAAEVQQVLNRYTS 167
Query: 81 D-VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDS 137
+ P IP + + V + RLRGLP++A DDI+ F + +
Sbjct: 168 SPLIPTLPAPLIPVLPAPFPLAGAGVRDCV-RLRGLPYTASIDDILGFLGEVAGDIRPHG 226
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
+H+ +N GRP+G+AF++ +A+ + A + + + RY+E+FP S EEM L G
Sbjct: 227 VHMVLNQQGRPSGDAFIQMKSADRALVAAQRCHKKMMKERYVEVFPCSGEEMSLVLMGG 285
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R++GLP++AG DI+ FF+ + L DS+ + + GRP G+A V F + + ++ A+A+
Sbjct: 396 LVRMQGLPYTAGVKDILSFFQGYQLPADSVLVLHSFSGRPRGDALVTFPSLDAARRAVAE 455
Query: 169 DR-MTLGSRYIEL 180
+ TLG ++++L
Sbjct: 456 EHGRTLGGQHVQL 468
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
+ + +N+ GR GEA V F ++E A+ + + +G+RYIE++ +S EE
Sbjct: 4 VALCLNAQGRRNGEALVRFVDSEQRDLALERHKHHMGARYIEVYKASGEE 53
>gi|395818385|ref|XP_003782611.1| PREDICTED: epithelial splicing regulatory protein 1 [Otolemur
garnettii]
Length = 665
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 268 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 314
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 315 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 371
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 372 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 403
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 347 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 405
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 406 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 455
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 456 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 515
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 516 MNFVLMGG 523
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 214 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 273
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 274 HKHHMGTRYIEVYKATGED 292
>gi|417412369|gb|JAA52574.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 701
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 300 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 346
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 347 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 403
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 404 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 435
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 379 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 437
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 438 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 487
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 488 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 547
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 548 MNFVLMGG 555
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 246 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 305
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 306 HKHHMGTRYIEVYKATGED 324
>gi|350594874|ref|XP_003483994.1| PREDICTED: RNA-binding protein 12 isoform 1 [Sus scrofa]
gi|350594876|ref|XP_003483995.1| PREDICTED: RNA-binding protein 12 isoform 2 [Sus scrofa]
gi|350594878|ref|XP_003483996.1| PREDICTED: RNA-binding protein 12 isoform 3 [Sus scrofa]
Length = 933
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAVENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVNSAKV-CAHITNIPFSVTKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 858 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 917
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 918 LNDR-PIGSRKVKL 930
>gi|296803341|gb|ADH51734.1| ESRP1/RAF1 fusion protein [Homo sapiens]
Length = 1061
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 25/178 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEV 79
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +NEV
Sbjct: 257 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEV 316
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSED 136
+ K++ V I+R+RGLPF+A ++++ FF ++
Sbjct: 317 AQFLS----------------KENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKE 357
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
I DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 358 GILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|7020094|dbj|BAA90992.1| unnamed protein product [Homo sapiens]
Length = 358
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 25/178 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEV 79
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +NEV
Sbjct: 97 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEV 156
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSED 136
+ K++ V I+R+RGLPF+A ++++ FF ++
Sbjct: 157 AQFLS----------------KENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKE 197
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
I DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 198 GILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 255
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 24/160 (15%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 199 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 257
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 258 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 307
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
F + +H+ +N GRP+G+AF++ +A+ + A K
Sbjct: 308 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQK 347
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 66 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE++ ++ E+
Sbjct: 126 HKHHMGTRYIEVYKATGEDF 145
>gi|148673702|gb|EDL05649.1| RNA binding motif protein 35A, isoform CRA_a [Mus musculus]
Length = 483
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 155 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 198
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 199 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 255
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 256 EYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNR 290
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 234 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEV-QQVLNRFS 292
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 293 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 342
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EE
Sbjct: 343 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 402
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 403 MNFVLMGG 410
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 101 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 160
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE++ ++ E+
Sbjct: 161 HKHHMGTRYIEVYKATGEDF 180
>gi|341896441|gb|EGT52376.1| hypothetical protein CAEBREN_32196, partial [Caenorhabditis
brenneri]
Length = 616
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 18/149 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R+R + RY+EV YKA +E V GS S + + +
Sbjct: 238 DLALKRHRNFLLSRYIEV--------YKAGLDEFMHVATGS---------STEAMEFVSA 280
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
+ I+R+RGLP+ + I FF+ L+E + IT +DGRPTG+AFV+F ED++
Sbjct: 281 NAVIVRMRGLPYDCSDNQIRAFFEPLKLTEKILFIT-RTDGRPTGDAFVQFETEEDAQKG 339
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ K R +G RYIELF S+ E+ + + R
Sbjct: 340 LLKHRHIIGQRYIELFKSTAAEVQQVVKR 368
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 18/177 (10%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LF+ + + + TG+AF L ++R +G+RY+E+F+S E + +
Sbjct: 312 ILFITRTDGRPTGDAFVQFETEEDAQKGLLKHRHIIGQRYIELFKSTAAEVQQVVKR--C 369
Query: 81 DVRGGSPHRSIPRA-KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDS 137
++ +P ++ A ++ DE K V RLRGLP+ A I+ F ++ ++
Sbjct: 370 NLINSNP--AVANAIETPDEKKKDCV-----RLRGLPYEATVQHIVTFLGEYSSMVKFQG 422
Query: 138 IHITMNSDGRPTGEAFVEFANAE---DSKAAMAKDRMTLG--SRYIELFPSSHEEMD 189
+H+ N+ G P+GEAF++ + + + A + + M +G RYIE+F S+ EE++
Sbjct: 423 VHMVYNNQGHPSGEAFIQMISEQAAAATAAGVHNNFMCVGKKKRYIEVFQSTAEELN 479
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
++ P + HD G D + R RGLP+ A + FF + I + ++S+GR
Sbjct: 165 YQPAPILEDHDVGADG--DNVVCRARGLPWQASDQHVAQFFAGLDIVPCGIALCLSSEGR 222
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
GE V+FA+ E A+ + R L SRYIE++ + +E
Sbjct: 223 RNGEVLVQFASQESRDLALKRHRNFLLSRYIEVYKAGLDE 262
>gi|296226947|ref|XP_002807679.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 1 [Callithrix jacchus]
Length = 676
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|170763529|ref|NP_001116298.1| epithelial splicing regulatory protein 1 isoform 3 [Homo sapiens]
gi|114620965|ref|XP_001143826.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1 [Pan
troglodytes]
Length = 659
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|441647515|ref|XP_003268407.2| PREDICTED: epithelial splicing regulatory protein 1 [Nomascus
leucogenys]
Length = 821
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 25/179 (13%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANE 78
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +NE
Sbjct: 418 ALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNE 477
Query: 79 VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSE 135
V+ K++ V I+R+RGLPF+A ++++ FF +
Sbjct: 478 VAQFLS----------------KENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGK 518
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ I DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 519 EGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 577
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 521 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 579
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 580 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 629
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 630 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 689
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 690 MNFVLMGG 697
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 388 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 447
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 448 HKHHMGTRYIEVYKATGED 466
>gi|297299790|ref|XP_002808532.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 1-like [Macaca mulatta]
Length = 677
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 29/190 (15%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM---TLGSRYIELFPSSH 185
F + +H+ +N GRP+G+AF++ +A+ +A MA + + RY+E+F S
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSAD--RAFMAAQKCHXKNMKDRYVEVFQCSA 525
Query: 186 EEMDEALSRG 195
EEM+ L G
Sbjct: 526 EEMNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|344273261|ref|XP_003408442.1| PREDICTED: epithelial splicing regulatory protein 1 [Loxodonta
africana]
Length = 677
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|403295784|ref|XP_003938806.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Saimiri boliviensis boliviensis]
Length = 676
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|344279913|ref|XP_003411730.1| PREDICTED: RNA-binding protein 12-like isoform 2 [Loxodonta
africana]
Length = 924
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSLGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPQEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG S+ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVSSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 849 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 908
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 909 LNDR-PIGSRKVKLI 922
>gi|56790297|ref|NP_060167.2| epithelial splicing regulatory protein 1 isoform 1 [Homo sapiens]
gi|124020999|sp|Q6NXG1.2|ESRP1_HUMAN RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|119612127|gb|EAW91721.1| RNA binding motif protein 35A, isoform CRA_b [Homo sapiens]
gi|127799385|gb|AAH67098.2| Epithelial splicing regulatory protein 1 [Homo sapiens]
Length = 681
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 323
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 324 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|417412016|gb|JAA52424.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 627
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 300 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 346
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 347 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 403
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 404 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 435
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 379 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 437
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 438 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 487
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 488 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 547
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 548 MNFVLMGG 555
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 246 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 305
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 306 HKHHMGTRYIEVYKATGED 324
>gi|402878743|ref|XP_003903032.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Papio anubis]
Length = 604
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|170763525|ref|NP_001030087.2| epithelial splicing regulatory protein 1 isoform 2 [Homo sapiens]
gi|332830836|ref|XP_003311899.1| PREDICTED: epithelial splicing regulatory protein 1 [Pan
troglodytes]
Length = 677
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|426360257|ref|XP_004047364.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Gorilla gorilla gorilla]
Length = 677
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|355698103|gb|EHH28651.1| RNA-binding protein 35A [Macaca mulatta]
gi|355779831|gb|EHH64307.1| RNA-binding protein 35A [Macaca fascicularis]
Length = 681
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 323
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 324 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|344279911|ref|XP_003411729.1| PREDICTED: RNA-binding protein 12-like isoform 1 [Loxodonta
africana]
Length = 936
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSLGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPQEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG S+ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVSSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 861 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 920
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 921 LNDR-PIGSRKVKLI 934
>gi|170763533|ref|NP_001116299.1| epithelial splicing regulatory protein 1 isoform 5 [Homo sapiens]
gi|114620967|ref|XP_001143905.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2 [Pan
troglodytes]
Length = 604
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|147907062|ref|NP_001079993.1| RNA binding motif protein 12 [Xenopus laevis]
gi|37589430|gb|AAH59291.1| Rbm12-prov protein [Xenopus laevis]
Length = 877
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 23/188 (12%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
V+ + G A L P AL+RNR MG+R++EV + +++ + +
Sbjct: 333 VILTDPMGRHNGSALVKLITPHDTFEALKRNRMLMGQRFIEVSPATERQWIVNGGHMLKQ 392
Query: 82 ----------------VRGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDI 124
R SP+ +S PR++S E H + L+GLP+ A +
Sbjct: 393 QNVGHHGPPPLMQQLITRSKSPNPQSRPRSRSPHE------HGFCVYLKGLPYEAENKHV 446
Query: 125 MDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+DFFK + EDSI+I S+G+ TGE F+EF N ED K+A+ + + +G+R++++ P +
Sbjct: 447 IDFFKKLNIVEDSIYIAYGSNGKATGEGFLEFRNEEDYKSALCRHKQYMGNRFVQVHPIT 506
Query: 185 HEEMDEAL 192
+ M E +
Sbjct: 507 KKAMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVSLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R++ +PF+ D+I+DFF + L S+ + + G PTGEA V F + +++ AA+
Sbjct: 802 VIRVQNMPFTVTVDEILDFFYGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAAVVD 861
Query: 169 -DRMTLGSRYIEL 180
+ +GSR ++L
Sbjct: 862 LNERPIGSRKVKL 874
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
L GLP + DI + F + D I I + GR G A V+ D+ A+ ++RM
Sbjct: 308 LHGLPLPVSEADIKELFHGLRI--DGIVILTDPMGRHNGSALVKLITPHDTFEALKRNRM 365
Query: 172 TLGSRYIELFPSSHEEM 188
+G R+IE+ P++ +
Sbjct: 366 LMGQRFIEVSPATERQW 382
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 20/173 (11%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N K TGE F AL R++Q MG R+V+V + KA+ ++ +
Sbjct: 467 NGKATGEGFLEFRNEEDYKSALCRHKQYMGNRFVQVHPITK----KAMLEKIDMI----- 517
Query: 88 HRSIPRAKSHDEGKDSAVHTGI----LRLRG----LPFSAGKDDIMDFF--KDFVLSEDS 137
H+ + ++ ++ E KD+ + RL G LP+S + DI FF + F + E+
Sbjct: 518 HKKM-QSYNYGEHKDAPLDAEFDKHGPRLWGHLSNLPYSIMRKDISHFFISEGFAIDENF 576
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ + +++G+ G+A V+F + +D++ + R L R + L + EE ++
Sbjct: 577 VQLLTDNNGQCIGQALVQFRSEDDARKSERLHRKKLNGRDVFLHIVNAEERND 629
>gi|34192605|gb|AAH19932.1| ESRP1 protein [Homo sapiens]
Length = 656
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 328 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 371
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 372 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 428
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 429 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 463
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 407 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 465
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 466 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 515
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 516 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 575
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 576 MNFVLMGG 583
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 274 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 333
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 334 HKHHMGTRYIEVYKATGED 352
>gi|127799644|gb|AAH99916.2| Epithelial splicing regulatory protein 1 [Homo sapiens]
Length = 677
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|402878741|ref|XP_003903031.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Papio anubis]
Length = 659
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|348588462|ref|XP_003479985.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 1
[Cavia porcellus]
Length = 681
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 323
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 324 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|297683325|ref|XP_002819333.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Pongo abelii]
Length = 604
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|402878739|ref|XP_003903030.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Papio anubis]
Length = 677
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|403295786|ref|XP_003938807.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Saimiri boliviensis boliviensis]
Length = 603
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|37747755|gb|AAH59280.1| Rbm35a protein, partial [Mus musculus]
Length = 490
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 162 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 205
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 206 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 262
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 263 EYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNR 297
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 241 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEV-QQVLNRFS 299
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 300 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 349
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EE
Sbjct: 350 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 409
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 410 MNFVLMGG 417
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 108 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 167
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE++ ++ E+
Sbjct: 168 HKHHMGTRYIEVYKATGEDF 187
>gi|426360259|ref|XP_004047365.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Gorilla gorilla gorilla]
Length = 659
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|284004917|ref|NP_001164804.1| RNA-binding protein 12 [Oryctolagus cuniculus]
gi|217038336|gb|ACJ76629.1| RNA binding motif protein 12 (predicted) [Oryctolagus cuniculus]
Length = 940
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 12/157 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG----SPHRSIPRAKSHDEG 100
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQTHPPPPQTLPRSKSPSGQ 418
Query: 101 KDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 155
K S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVE
Sbjct: 419 KRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVE 478
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
F N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 FRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 515
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 454 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 513
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 514 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 563
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + S E
Sbjct: 564 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSEHLHRKKLNGREAFVHVVSLE 623
Query: 187 EMDE 190
+M E
Sbjct: 624 DMRE 627
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 865 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 924
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 925 LNDR-PIGSRKVKLI 938
>gi|229485495|sp|B2RYD2.2|ESRP1_RAT RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
Length = 677
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 23/187 (12%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA------ 74
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E +
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 418
Query: 75 ---IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
I + + P + +P D +RLRGLP++A +DI+DF +F
Sbjct: 419 APLIPLPTAPIIPVLPQQFVPPTNVRD----------CVRLRGLPYAATIEDILDFLGEF 468
Query: 132 V--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEM 188
+ +H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EEM
Sbjct: 469 STDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEM 528
Query: 189 DEALSRG 195
+ L G
Sbjct: 529 NFVLMGG 535
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|189230098|ref|NP_001121036.2| epithelial splicing regulatory protein 1 [Rattus norvegicus]
gi|187469151|gb|AAI66735.1| RGD1560481 protein [Rattus norvegicus]
Length = 659
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 23/187 (12%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA------ 74
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E +
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 418
Query: 75 ---IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
I + + P + +P D +RLRGLP++A +DI+DF +F
Sbjct: 419 APLIPLPTAPIIPVLPQQFVPPTNVRD----------CVRLRGLPYAATIEDILDFLGEF 468
Query: 132 V--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEM 188
+ +H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EEM
Sbjct: 469 STDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEM 528
Query: 189 DEALSRG 195
+ L G
Sbjct: 529 NFVLMGG 535
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|395739900|ref|XP_003777336.1| PREDICTED: epithelial splicing regulatory protein 1 [Pongo abelii]
Length = 677
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|297683323|ref|XP_002819332.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Pongo abelii]
Length = 659
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|149061069|gb|EDM11679.1| similar to hypothetical protein FLJ20171 (predicted) [Rattus
norvegicus]
Length = 604
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 23/187 (12%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA------ 74
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E +
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 418
Query: 75 ---IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
I + + P + +P D +RLRGLP++A +DI+DF +F
Sbjct: 419 APLIPLPTAPIIPVLPQQFVPPTNVRD----------CVRLRGLPYAATIEDILDFLGEF 468
Query: 132 V--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEM 188
+ +H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EEM
Sbjct: 469 STDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEM 528
Query: 189 DEALSRG 195
+ L G
Sbjct: 529 NFVLMGG 535
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|426360261|ref|XP_004047366.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Gorilla gorilla gorilla]
Length = 604
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|119612126|gb|EAW91720.1| RNA binding motif protein 35A, isoform CRA_a [Homo sapiens]
Length = 503
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 120 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 163
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 164 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 220
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 221 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 255
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 199 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 257
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 258 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 307
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 308 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 367
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 368 MNFVLMGG 375
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 66 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 126 HKHHMGTRYIEVYKATGED 144
>gi|83320105|ref|NP_001032746.1| RNA-binding protein 12 [Rattus norvegicus]
gi|31324614|gb|AAP48569.1| swan [Rattus norvegicus]
gi|149030841|gb|EDL85868.1| rCG37481, isoform CRA_a [Rattus norvegicus]
gi|149030844|gb|EDL85871.1| rCG37481, isoform CRA_a [Rattus norvegicus]
Length = 1032
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 957 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 1016
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 1017 LNDR-PIGSRKVKL 1029
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 20/156 (12%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG+ S+ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
F + + E+++H+ ++++G+ G+A V+F +D+
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDA 598
>gi|170763527|ref|NP_001116297.1| epithelial splicing regulatory protein 1 isoform 4 [Homo sapiens]
Length = 608
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|126330654|ref|XP_001364439.1| PREDICTED: g-rich sequence factor 1 isoform 1 [Monodelphis
domestica]
Length = 478
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 100/208 (48%), Gaps = 46/208 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--- 71
++I+D+ FV H+ K TGEA+ P + AL ++++ +G RY+E+F S+R E
Sbjct: 272 LNIIDITFVMDHRGRKKTGEAYVQFEEPEMANQALLKHKEEIGNRYIEIFPSRRNEVRTH 331
Query: 72 ---YKAIANEVSDVRGGSP----------------------------HRSIPR--AKSHD 98
+K S ++GG H+ P A++ D
Sbjct: 332 VGSHKGKKVAPSLLKGGPEPGPSLDEHDRSEELRAMMTFESEKEGELHKEAPEKSAEAAD 391
Query: 99 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEF 156
G ++H + +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 392 FGTMPSLH--FVHMRGLPFQANAQDIVNFFAPL----KPVRITMEYSSSGKATGEADVHF 445
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 446 ETHEDAVAAMGKDRSHVQHRYIELFLNS 473
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++ MG+RYVEV+ I NE D
Sbjct: 183 FLLNRDGKRRGDALVEMESEQDVKKALEKHHLYMGQRYVEVYE---------INNEDVDA 233
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS + AV+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 234 L----------MKSLQAKSNPAVNDGVVRLRGLPYSCNEKDIVDFFAGLNIID--ITFVM 281
Query: 143 NSDGRP-TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K + +G+RYIE+FPS E+
Sbjct: 282 DHRGRKKTGEAYVQFEEPEMANQALLKHKEEIGNRYIEIFPSRRNEV 328
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A VE + +D K A+
Sbjct: 150 LIRAQGLPWSCTVEDVLKFFFDCRIRNGENGIHFLLNRDGKRRGDALVEMESEQDVKKAL 209
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K + +G RY+E++ ++E++D
Sbjct: 210 EKHHLYMGQRYVEVYEINNEDVD 232
>gi|159155917|gb|AAI54577.1| Heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
Length = 403
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 19/157 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF + A++++R+ MG RYVEVF+S E + + +
Sbjct: 50 SGEAFVEFESEEDLKSAVKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNCP-------- 101
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
D G D G++RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 102 ------DTGGD-----GLVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGE 150
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
AFV+FA+ + ++ A+ K + +G RYIE+F SS E+
Sbjct: 151 AFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEV 187
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S D++ FF + ++ + SIH T +GRP+GEAFVEF + ED K+A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKSAV 67
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 68 KKDRETMGHRYVEVFKSNSVEMDWVL 93
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 29/190 (15%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE---YYKAIANE 78
L V + TGEAF + AL+++++ +G RY+E+F+S R E +Y+
Sbjct: 138 TLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPQRKV 197
Query: 79 VSDVR--------GGSPHRSIPRAKSHD---------------EGKDSAVHTG-ILRLRG 114
+ R GG + S+ R S + G TG + +RG
Sbjct: 198 MGMQRPSPYDRPGGGRGYNSMGRGVSFERMRRGGYGGDGRYGDSGSSFQSTTGHCVHMRG 257
Query: 115 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 174
LP+ A + DI +FF L+ +H+ + DGR TGEA VEFA ED+ AAM+KD+ +
Sbjct: 258 LPYRATETDIYNFFSP--LNPVRVHLEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQ 315
Query: 175 SRYIELFPSS 184
RY+ELF +S
Sbjct: 316 HRYVELFLNS 325
>gi|348588464|ref|XP_003479986.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 2
[Cavia porcellus]
Length = 659
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 323
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 324 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EE
Sbjct: 468 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>gi|26330362|dbj|BAC28911.1| unnamed protein product [Mus musculus]
Length = 992
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 917 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 976
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 977 LNDR-PIGSRKVKL 989
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG+ S+ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------ELVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
F + + E ++H+ ++++G+ G+A V+F +D+
Sbjct: 563 FLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDA 598
>gi|114155120|ref|NP_083673.3| RNA-binding protein 12 [Mus musculus]
gi|114155125|ref|NP_733486.2| RNA-binding protein 12 [Mus musculus]
gi|262527571|sp|Q8R4X3.3|RBM12_MOUSE RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|26348755|dbj|BAC38017.1| unnamed protein product [Mus musculus]
gi|30851612|gb|AAH52473.1| RNA binding motif protein 12 [Mus musculus]
Length = 992
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 917 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 976
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 977 LNDR-PIGSRKVKL 989
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG+ S+ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------ELVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
F + + E ++H+ ++++G+ G+A V+F +D+
Sbjct: 563 FLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDA 598
>gi|426241396|ref|XP_004014577.1| PREDICTED: RNA-binding protein 12 isoform 2 [Ovis aries]
Length = 926
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P + +PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQPLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 851 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 910
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 911 LNDR-PIGSRKVKL 923
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMILNPEGDVTSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
>gi|85700309|gb|AAI12044.1| ESRP1 protein [Homo sapiens]
Length = 392
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 104 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 155
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + K++ V I+R+RGLPF+A ++++ FF ++ I
Sbjct: 156 AGGTSNEV-----AQFLSKENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 207
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 208 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 262
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 206 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 264
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 265 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 314
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 315 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 374
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 375 MNFVLMGG 382
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 73 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 132
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 133 HKHHMGTRYIEVYKATGED 151
>gi|74184867|dbj|BAE39056.1| unnamed protein product [Mus musculus]
Length = 914
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 281 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQK 340
Query: 102 DS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 341 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 400
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 401 RNDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 436
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 228 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 285
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 286 RMLMIQRYVEVSPATERQWVAA 307
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 839 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 898
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 899 LNDR-PIGSRKVKL 911
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 375 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITKKGMLE 434
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG+ S+ + +PFS K D++
Sbjct: 435 KIDMIRKRLQNFSYDQR---------ELVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQ 484
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
F + + E ++H+ ++++G+ G+A V+F +D+
Sbjct: 485 FLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDA 520
>gi|393909284|gb|EFO25784.2| hypothetical protein LOAG_02706 [Loa loa]
Length = 229
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 18/177 (10%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
L + + GEA Q + AL+R+R + RY+EV+R+ R ++ + A S+
Sbjct: 9 ALCLSPEGRRNGEALVRFEDSEQRELALRRHRHFLHNRYIEVYRATRNDFLQIAAGSNSE 68
Query: 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD----FVLSEDS 137
R + R G A+ I+R+RGLP+ + I++FF + +++
Sbjct: 69 AV-----RFVSR------GSTGAM---IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGG 114
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
I SDGRPTG+AFV F + E + A+ K + T+G+RYIELF S+ E+ + ++R
Sbjct: 115 ILFVNKSDGRPTGDAFVMFDSEEAGQKALTKHKRTIGTRYIELFRSTQAEVQQVVNR 171
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 20/120 (16%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV+K++ + TG+AF + AL ++++ +G RY+E+FRS + E + + +
Sbjct: 115 ILFVNKSDGRPTGDAFVMFDSEEAGQKALTKHKRTIGTRYIELFRSTQAEVQQVVNRNLE 174
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ R I S + +RLRGLP+ A ++I++F L E + HI
Sbjct: 175 N-----DQRMIVHGSSRKD---------CIRLRGLPYEAHVENIVEF-----LGETARHI 215
Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
I + ++ +GR GEA V F ++E + A+ + R L +RYIE++ ++
Sbjct: 8 IALCLSPEGRRNGEALVRFEDSEQRELALRRHRHFLHNRYIEVYRAT 54
>gi|312070751|ref|XP_003138291.1| hypothetical protein LOAG_02706 [Loa loa]
Length = 224
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 90/167 (53%), Gaps = 18/167 (10%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
GEA Q + AL+R+R + RY+EV+R+ R ++ + A S+ R +
Sbjct: 14 NGEALVRFEDSEQRELALRRHRHFLHNRYIEVYRATRNDFLQIAAGSNSEAV-----RFV 68
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD----FVLSEDSIHITMNSDGR 147
R G A+ I+R+RGLP+ + I++FF + +++ I SDGR
Sbjct: 69 SR------GSTGAM---IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGR 119
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
PTG+AFV F + E + A+ K + T+G+RYIELF S+ E+ + ++R
Sbjct: 120 PTGDAFVMFDSEEAGQKALTKHKRTIGTRYIELFRSTQAEVQQVVNR 166
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 20/120 (16%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV+K++ + TG+AF + AL ++++ +G RY+E+FRS + E + + +
Sbjct: 110 ILFVNKSDGRPTGDAFVMFDSEEAGQKALTKHKRTIGTRYIELFRSTQAEVQQVVNRNLE 169
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ R I S + +RLRGLP+ A ++I++F L E + HI
Sbjct: 170 N-----DQRMIVHGSSRKD---------CIRLRGLPYEAHVENIVEF-----LGETARHI 210
Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
I + ++ +GR GEA V F ++E + A+ + R L +RYIE++ ++
Sbjct: 3 IALCLSPEGRRNGEALVRFEDSEQRELALRRHRHFLHNRYIEVYRAT 49
>gi|405952153|gb|EKC19997.1| Heterogeneous nuclear ribonucleoprotein H [Crassostrea gigas]
Length = 544
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 19/168 (11%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
+ + +GE F L V L+ + ++MG RY+EVFRSK+ E I
Sbjct: 81 REGRPSGECFVELIDEDNVQRGLKCHNKHMGNRYIEVFRSKKSEMDWVI----------- 129
Query: 87 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
K G+ ++RLRGLPF K++I FF + + I + + G
Sbjct: 130 --------KRAGPGQMPGSCEAVVRLRGLPFGCSKEEIAQFFTGLEIVPNGIMLPEDRQG 181
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
R TGEA+V+FA+ E ++ A++K + +G RYIE+F S +E A+ +
Sbjct: 182 RSTGEAYVQFASQEIAEKALSKHKERIGHRYIEIFKSGMQEAQNAMGQ 229
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
++RLRGLP+SA + +++ FF + V E +H T + +GRP+GE FVE + ++ +
Sbjct: 43 VVRLRGLPWSATESEVVKFFGEDVEIVDGEQGVHFTFSREGRPSGECFVELIDEDNVQRG 102
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ +G+RYIE+F S EMD + R
Sbjct: 103 LKCHNKHMGNRYIEVFRSKKSEMDWVIKR 131
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLPF A + DI DFF L+ + +GRPTGEA V+F D+ AM++
Sbjct: 391 VHMRGLPFQALESDIADFFSP--LTPVRVEFEFAPNGRPTGEANVDFKTHSDAVEAMSRH 448
Query: 170 RMTLGSRYIELFPSS 184
+ + RYIELF +S
Sbjct: 449 KKNMQHRYIELFLNS 463
>gi|426241394|ref|XP_004014576.1| PREDICTED: RNA-binding protein 12 isoform 1 [Ovis aries]
Length = 931
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P + +PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQPLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 856 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 915
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 916 LNDR-PIGSRKVKL 928
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMILNPEGDVTSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
>gi|156401541|ref|XP_001639349.1| predicted protein [Nematostella vectensis]
gi|156226477|gb|EDO47286.1| predicted protein [Nematostella vectensis]
Length = 341
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 20/165 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
GEAF D AL+R++ ++G RY+EV+++ Q++ + +
Sbjct: 52 NGEAFIRFENGDHRDLALRRHKMHLGTRYIEVYKASAQDFLRIV---------------- 95
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRP 148
R S S I+R+RGLPFS D++ FF D V E I + +G+
Sbjct: 96 -RGMSIAANFVSTNAEVIIRMRGLPFSTKAADVVRFFGDDVPVYRGEGGILMVRGRNGKA 154
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
TG+AFV F E +AA+ K R LGSRY+ELF SS E+ + LS
Sbjct: 155 TGDAFVLFETEEHGRAALKKHREVLGSRYVELFRSSQSEVQQVLS 199
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 30/191 (15%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
+N K TG+AF + AL+++R+ +G RYVE+FRS + E + +++ + G
Sbjct: 150 RNGKATGDAFVLFETEEHGRAALKKHREVLGSRYVELFRSSQSEVQQVLSSLSLFMMGVP 209
Query: 87 PHRSIPR---------------------AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIM 125
P +P A KD LRLRGLPFSA D++
Sbjct: 210 PLAMLPNPLPQHPPFHPPMFLPGPVPYAANGGSNAKDC------LRLRGLPFSATVQDVL 263
Query: 126 DFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182
DF K+ ++ +H+ N+ GRP+G+A+V+ + + + AA + + +G RYIE+FP
Sbjct: 264 DFLKEHAAYVAPGGVHMVYNTQGRPSGDAYVQLLSPDFAAAAANELHKHHMGERYIEVFP 323
Query: 183 SSHEEMDEALS 193
S+ ++ ++
Sbjct: 324 CSNSDISAVIA 334
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+LR RGLP+ A D+ +FF+ + I +N GR GEAF+ F N + A+ +
Sbjct: 12 VLRARGLPWQASDQDVANFFRGLNIPRGGIAFCLNMQGRRNGEAFIRFENGDHRDLALRR 71
Query: 169 DRMTLGSRYIELFPSSHEE 187
+M LG+RYIE++ +S ++
Sbjct: 72 HKMHLGTRYIEVYKASAQD 90
>gi|312032395|ref|NP_001185821.1| RNA-binding protein 12 [Bos taurus]
Length = 953
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P + +PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQPLPRSKSPSGQK 418
Query: 102 DS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 878 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 937
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 938 LNDR-PIGSRKVKL 950
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMILNPEGDVTSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
>gi|47086853|ref|NP_997754.1| heterogeneous nuclear ribonucleoprotein H1, like [Danio rerio]
gi|28278402|gb|AAH44161.1| Zgc:85960 [Danio rerio]
gi|182891430|gb|AAI64507.1| Zgc:85960 protein [Danio rerio]
Length = 407
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 19/157 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF L + A++++R++MG RYVEVF+S E + + +
Sbjct: 50 SGEAFVELESEDDLKIAVKKDRESMGHRYVEVFKSNNVEMDWVLKHTGPNC--------- 100
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
EG G++RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 101 ----PETEGD------GLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 150
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
AFV+FA+ + ++ A+ K + +G RYIE+F SS E+
Sbjct: 151 AFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEV 187
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 32/193 (16%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE---YYKAIANE 78
L V + TGEAF + AL+++++ +G RY+E+F+S R E +Y+
Sbjct: 138 TLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPPRKG 197
Query: 79 VSDVR---------GGSPHRSIPRAKSHD-----------------EGKDSAVHTG-ILR 111
+ R GG + + R S D +G + TG +
Sbjct: 198 MGMQRPGPYDRPSGGGRGYNGMSRGGSFDRMRRGGYGGGVSDGRYGDGGNFQSTTGHCVH 257
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RGLP+ A + DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+ D+
Sbjct: 258 MRGLPYRATEPDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSNDKA 315
Query: 172 TLGSRYIELFPSS 184
+ RY+ELF +S
Sbjct: 316 NMQHRYVELFLNS 328
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S +++ FF +S + +IH T +GRP+GEAFVE + +D K A+
Sbjct: 8 VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAV 67
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RY+E+F S++ EMD L
Sbjct: 68 KKDRESMGHRYVEVFKSNNVEMDWVL 93
>gi|148223399|ref|NP_001079524.1| epithelial splicing regulatory protein 1 [Xenopus laevis]
gi|82241595|sp|Q7ZY29.1|ESRP1_XENLA RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|27694832|gb|AAH44002.1| MGC53361 protein [Xenopus laevis]
Length = 688
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 281 DLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 327
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I D RPTG+AFV FA E +
Sbjct: 328 ---IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYA 384
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 385 QNALKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + +N+ TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 360 ILFVTYPDNRPTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEV-QQVLNRYS 418
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P IP D +RLRGLP++A +DI++F +
Sbjct: 419 SAPLIPLPTPPIIPVLPQPFIPPVNVRD----------CIRLRGLPYAATIEDILEFLGE 468
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G++F++ +A+ + A K + T+ RY+E+F S EE
Sbjct: 469 FSADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAYLAAQKCHKKTMKDRYVEVFQCSAEE 528
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 529 MNFVLMGG 536
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 287 HKHHMGNRYIEVYKATGED 305
>gi|45387779|ref|NP_991247.1| heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
gi|41107558|gb|AAH65439.1| Heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
Length = 403
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 19/157 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF + A++++R+ MG RYVEVF+S E + + +
Sbjct: 50 SGEAFVEFESEEDLKIAVKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNCP-------- 101
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
+ G D G++RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 102 ------ETGGD-----GLVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGE 150
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
AFV+FA+ + ++ A+ K + +G RYIE+F SS E+
Sbjct: 151 AFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEV 187
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S D++ FF + ++ + SIH T +GRP+GEAFVEF + ED K A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKIAV 67
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 68 KKDRETMGHRYVEVFKSNSVEMDWVL 93
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 29/190 (15%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE---YYKAIANE 78
L V + TGEAF + AL+++++ +G RY+E+F+S R E +Y+
Sbjct: 138 TLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPQRKV 197
Query: 79 VSDVR--------GGSPHRSIPRAKSHD---------------EGKDSAVHTG-ILRLRG 114
+ R GG + S+ R S + G TG + +RG
Sbjct: 198 MGMQRPSPYDRPGGGRGYNSMGRGVSFERMRRGGYGGDGRYGDSGSSFQSTTGHCVHMRG 257
Query: 115 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 174
LP+ A + DI +FF L+ +H+ + DGR TGEA VEFA ED+ AAM+KD+ +
Sbjct: 258 LPYRATETDIYNFFSP--LNPVRVHLEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQ 315
Query: 175 SRYIELFPSS 184
RY+ELF +S
Sbjct: 316 HRYVELFLNS 325
>gi|157111781|ref|XP_001651725.1| G-rich sequence factor-1, putative [Aedes aegypti]
gi|108878303|gb|EAT42528.1| AAEL005947-PB [Aedes aegypti]
Length = 491
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+D V + + TGEA+ + AL +N+ +G RY+EVF + ++ KA+
Sbjct: 47 IDQVHICINQMTKRQTGEAYLRMPTLEDQIKALDQNKATLGHRYIEVFTASDDQFDKAVN 106
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE- 135
E S GG +LR+RGLP+S +D+ FF +
Sbjct: 107 REESAEDGGP----------------------VLRMRGLPWSCTTEDVKRFFSGLTIKNG 144
Query: 136 -DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ I + ++ GR +GEA VEFA ++ AM+K + +G+RYIELF SS EM A +R
Sbjct: 145 YNGIVLLLDQLGRASGEAIVEFATDAEADQAMSKQKEKIGNRYIELFRSSTREMKWAENR 204
Query: 195 GR 196
R
Sbjct: 205 LR 206
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA 167
+RLRGLP++ + DI DF + D +HI +N R TGEA++ ED A+
Sbjct: 23 FIRLRGLPWNITEGDIRDFLSGVEI--DQVHICINQMTKRQTGEAYLRMPTLEDQIKALD 80
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALSR 194
+++ TLG RYIE+F +S ++ D+A++R
Sbjct: 81 QNKATLGHRYIEVFTASDDQFDKAVNR 107
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ LRG+PFS + DI DFF L +++ +S GRP+GE F E++ AM K
Sbjct: 409 CVHLRGMPFSCDEQDIYDFF--MPLRPVKCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKK 466
Query: 169 DRMTLGSRYIELFPSS 184
+ +GSRYIELF S
Sbjct: 467 HKEKMGSRYIELFAGS 482
>gi|198417021|ref|XP_002122500.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H2
(hnRNP H2) (Heterogeneous nuclear ribonucleoprotein H)
(hnRNP H) (FTP-3) [Ciona intestinalis]
Length = 420
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 22/162 (13%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS--KRQEYYKAIANEVSDVRGGSPHR 89
+GEAF + + +++ Q +G+RY+EVF S K EY +
Sbjct: 48 SGEAFVEVTSQKSLQTCFEKDHQLIGKRYIEVFESSVKEMEYVLGL-------------- 93
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 149
S +E SA +RLRGLPF K+++ FF + + I + ++ +GR T
Sbjct: 94 ------SEEEIGSSAQADVFVRLRGLPFQCSKEEVAQFFSGLEIVPNGITLPLDDNGRST 147
Query: 150 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
GEA+VEF + E ++ A+ K + +G RYIE+F SS E+ E+
Sbjct: 148 GEAYVEFGSPESAEKALTKHKEKIGHRYIEIFKSSKRELMES 189
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFK-DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++RLRGLP++A + +++ F + V E I T D RP+GEAFVE + + +
Sbjct: 7 VVRLRGLPWAATEAEVIKFLNVEVVGGEAGIRRTYTDDQRPSGEAFVEVTSQKSLQTCFE 66
Query: 168 KDRMTLGSRYIELFPSSHEEMDEAL 192
KD +G RYIE+F SS +EM+ L
Sbjct: 67 KDHQLIGKRYIEVFESSVKEMEYVL 91
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R+RGLPF + D+ +FF V ++I + DGR TGE V FA+ +D++AAM K
Sbjct: 318 VVRMRGLPFKCQEQDVFNFFSPLVPV--RVNIEYSDDGRVTGEGTVFFASYQDAQAAMQK 375
Query: 169 DRMTLGSRYIELFPSSH 185
++ + RYIELF S+
Sbjct: 376 NKECIQHRYIELFLRSN 392
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
L + N + TGEA+ G P + AL ++++ +G RY+E+F+S ++E ++ + D
Sbjct: 137 TLPLDDNGRSTGEAYVEFGSPESAEKALTKHKEKIGHRYIEIFKSSKRELMESQGEYMDD 196
Query: 82 VRG-GSPHRSIP 92
RG GS R P
Sbjct: 197 ERGFGSRGRPGP 208
>gi|52346028|ref|NP_001005057.1| epithelial splicing regulatory protein 1 [Xenopus (Silurana)
tropicalis]
gi|82182765|sp|Q6DEZ7.1|ESRP1_XENTR RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|49899931|gb|AAH76946.1| MGC89324 protein [Xenopus (Silurana) tropicalis]
Length = 687
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 281 DLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 327
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I D RPTG+AFV FA E +
Sbjct: 328 ---IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYA 384
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 385 QNALKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + +N+ TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 360 ILFVTYPDNRPTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEV-QQVLNRYS 418
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P IP D +RLRGLP++A +DI++F +
Sbjct: 419 SAPLIPLPTPPIIPVLPQPFIPPVNVRD----------CIRLRGLPYAATIEDILEFLGE 468
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G++F++ +A+ + A K + T+ RY+E+F S EE
Sbjct: 469 FSADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAYLAAQKCHKKTMKDRYVEVFQCSAEE 528
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 529 MNFVLMGG 536
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE++ ++ E+
Sbjct: 287 HKHHMGNRYIEVYKATGEDF 306
>gi|332029325|gb|EGI69308.1| RNA-binding protein fusilli [Acromyrmex echinatior]
Length = 677
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 22/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ +MG RY+EV+++ +++ V+ G H + R
Sbjct: 244 DMALKRHKHHMGARYIEVYKASGEDFIG-----VAGGTSGEAHAFLSRGAQ--------- 289
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ +++FF+ + ED + DGR TG+AFV FA
Sbjct: 290 --VIVRMRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFVKKPDGRATGDAFVLFAKE 347
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
ED+ A++K R +GSRYIELF S+ E+ + L+R
Sbjct: 348 EDAVKALSKHRDCIGSRYIELFRSTTAEVQQVLNRA 383
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 13/191 (6%)
Query: 15 QLMDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY 72
Q++D D VLFV K + + TG+AF + AL ++R +G RY+E+FRS E
Sbjct: 318 QVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDAVKALSKHRDCIGSRYIELFRSTTAEVQ 377
Query: 73 KAI--ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
+ + A + V P + S +RLRGLP+ A + I++F +
Sbjct: 378 QVLNRATDPKQVILPPPPIAQLPPLLPQHIITSGTRKDCVRLRGLPYEALVEHILEFMGE 437
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG--SRYIELFP 182
+ +H+ N+ G+P+GEAF++ ++E S A A R M G RYIE+F
Sbjct: 438 HSKNIVYQGVHMVYNAQGQPSGEAFIQM-DSEASAYACATQRHHRYMIYGKKQRYIEVFQ 496
Query: 183 SSHEEMDEALS 193
S ++M+ L+
Sbjct: 497 CSGDDMNLVLT 507
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P S DE D+ ++R RGLP+ + DI FF+ +++ + + ++ GR GE
Sbjct: 176 PGICSKDEEVDNDC---VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGE 232
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
A V F N E A+ + + +G+RYIE++ +S E+
Sbjct: 233 ALVRFINKEHRDMALKRHKHHMGARYIEVYKASGED 268
>gi|390361167|ref|XP_003729861.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 1
[Strongylocentrotus purpuratus]
Length = 455
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 23/162 (14%)
Query: 37 CVLGYPLQVDF--ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRA 94
C + + + DF A+++++ + +RY+E+F+SKR E GG
Sbjct: 54 CFVEFDSEGDFQQAMKKDKNYLQKRYIELFKSKRSEMEWVTNRNSGGADGGE-------- 105
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
G+++LRGLPFS K++I +FF + + I + ++DGR TGEAFV
Sbjct: 106 -------------GLVKLRGLPFSCSKEEIAEFFSGLTIQANGITLPSDNDGRRTGEAFV 152
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
FA+ E ++ A+ K + +G RYIE+F S +E+ A + R
Sbjct: 153 LFASKEIAEKALKKHKSHMGHRYIEVFKSFPDELRRATNPTR 194
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R RGLP+S +++MDFF+D + + DSI NS GRP+GE FVEF + D + AM
Sbjct: 9 VIRARGLPWSTTAEEVMDFFEDCNILGAPDSIKFIFNSSGRPSGECFVEFDSEGDFQQAM 68
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
KD+ L RYIELF S EM+ +R
Sbjct: 69 KKDKNYLQKRYIELFKSKRSEMEWVTNR 96
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLPFS + DI +FF + + +N G+ G A V+F +++KAAM KD
Sbjct: 327 VHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDIN--GKRNGFAAVDFRTHDEAKAAMKKD 384
Query: 170 RMTLGSRYIELFPSSHEE 187
+ +GSRYIELF S EE
Sbjct: 385 KNNIGSRYIELFLHSSEE 402
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 85
TGEAF + + AL++++ +MG RY+EVF+S E +A N RGG
Sbjct: 147 TGEAFVLFASKEIAEKALKKHKSHMGHRYIEVFKSFPDELRRA-TNPTRGGRGG 199
>gi|157111783|ref|XP_001651726.1| G-rich sequence factor-1, putative [Aedes aegypti]
gi|108878304|gb|EAT42529.1| AAEL005947-PA [Aedes aegypti]
Length = 471
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+D V + + TGEA+ + AL +N+ +G RY+EVF + ++ KA+
Sbjct: 47 IDQVHICINQMTKRQTGEAYLRMPTLEDQIKALDQNKATLGHRYIEVFTASDDQFDKAVN 106
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE- 135
E S GG +LR+RGLP+S +D+ FF +
Sbjct: 107 REESAEDGGP----------------------VLRMRGLPWSCTTEDVKRFFSGLTIKNG 144
Query: 136 -DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ I + ++ GR +GEA VEFA ++ AM+K + +G+RYIELF SS EM A +R
Sbjct: 145 YNGIVLLLDQLGRASGEAIVEFATDAEADQAMSKQKEKIGNRYIELFRSSTREMKWAENR 204
Query: 195 GR 196
R
Sbjct: 205 LR 206
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA 167
+RLRGLP++ + DI DF + D +HI +N R TGEA++ ED A+
Sbjct: 23 FIRLRGLPWNITEGDIRDFLSGVEI--DQVHICINQMTKRQTGEAYLRMPTLEDQIKALD 80
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALSR 194
+++ TLG RYIE+F +S ++ D+A++R
Sbjct: 81 QNKATLGHRYIEVFTASDDQFDKAVNR 107
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ LRG+PFS + DI DFF L +++ +S GRP+GE F E++ AM K
Sbjct: 389 CVHLRGMPFSCDEQDIYDFF--MPLRPVKCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKK 446
Query: 169 DRMTLGSRYIELFPSS 184
+ +GSRYIELF S
Sbjct: 447 HKEKMGSRYIELFAGS 462
>gi|390361165|ref|XP_793087.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 2
[Strongylocentrotus purpuratus]
Length = 492
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 23/162 (14%)
Query: 37 CVLGYPLQVDF--ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRA 94
C + + + DF A+++++ + +RY+E+F+SKR E GG
Sbjct: 54 CFVEFDSEGDFQQAMKKDKNYLQKRYIELFKSKRSEMEWVTNRNSGGADGGE-------- 105
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
G+++LRGLPFS K++I +FF + + I + ++DGR TGEAFV
Sbjct: 106 -------------GLVKLRGLPFSCSKEEIAEFFSGLTIQANGITLPSDNDGRRTGEAFV 152
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
FA+ E ++ A+ K + +G RYIE+F S +E+ A + R
Sbjct: 153 LFASKEIAEKALKKHKSHMGHRYIEVFKSFPDELRRATNPTR 194
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R RGLP+S +++MDFF+D + + DSI NS GRP+GE FVEF + D + AM
Sbjct: 9 VIRARGLPWSTTAEEVMDFFEDCNILGAPDSIKFIFNSSGRPSGECFVEFDSEGDFQQAM 68
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
KD+ L RYIELF S EM+ +R
Sbjct: 69 KKDKNYLQKRYIELFKSKRSEMEWVTNR 96
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLPFS + DI +FF + + +N G+ G A V+F +++KAAM KD
Sbjct: 327 VHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDIN--GKRNGFAAVDFRTHDEAKAAMKKD 384
Query: 170 RMTLGSRYIELF 181
+ +GSRYIELF
Sbjct: 385 KNNIGSRYIELF 396
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 85
TGEAF + + AL++++ +MG RY+EVF+S E +A N RGG
Sbjct: 147 TGEAFVLFASKEIAEKALKKHKSHMGHRYIEVFKSFPDELRRA-TNPTRGGRGG 199
>gi|393908924|gb|EFO28044.2| heterogeneous nuclear ribonucleoprotein H [Loa loa]
Length = 370
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 96/174 (55%), Gaps = 14/174 (8%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + +GE + V DFAL ++++ +G+RYVE+ + +++ SD
Sbjct: 38 LTKDRDGRASGEGYVVFSSREDYDFALTKDKKYIGKRYVEL---------QQVSSMESDY 88
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
G P A + G++ T I+RL GLP+ K++I+ FF+ +++ I +T
Sbjct: 89 DDGDRRYGGPVADPNLPGRE----TSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTY 144
Query: 143 NS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+ G+P GEAFV F + + + A+AK++ + RY++++PSS+ EM AL G
Sbjct: 145 DRYSGKPKGEAFVAFTDEDSASKALAKNKEYIQHRYVDIYPSSYGEMLRALDGG 198
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I++ RGLP+S +DD+ +FF + S I +T + DGR +GE +V F++ ED A+ K
Sbjct: 7 IMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKDRDGRASGEGYVVFSSREDYDFALTK 66
Query: 169 DRMTLGSRYIELFPSSHEEMD 189
D+ +G RY+EL S E D
Sbjct: 67 DKKYIGKRYVELQQVSSMESD 87
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+R+RGLP+ A + DI+DFF+ + + +D RP+GEA VEF N D AAM +
Sbjct: 296 CIRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGTD-RPSGEAIVEFRNRADFDAAMQR 354
Query: 169 DRMTLGSRYIELFP 182
+R +GSRY+EL P
Sbjct: 355 NRNYMGSRYVELIP 368
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 20 VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 64
+DVL+ + ++ +GEA D A+QRNR MG RYVE+
Sbjct: 323 IDVLYEYGTDRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 367
>gi|383856881|ref|XP_003703935.1| PREDICTED: uncharacterized protein LOC100878893 [Megachile
rotundata]
Length = 1212
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 22/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ +MG RY+EV+++ +++ V+ G H + R
Sbjct: 808 DMALKRHKHHMGGRYIEVYKASGEDFVG-----VAGGTSGEAHAFLSRGAQ--------- 853
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD-----FVL-SEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ ++DFF VL ED + DGR TG+AFV FA
Sbjct: 854 --VIVRMRGLPYDCVAKQVLDFFLTGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKE 911
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
ED+ A++K R +GSRYIELF S+ E+ + L+R
Sbjct: 912 EDAVKALSKHRDCIGSRYIELFRSTIAEVQQVLNRA 947
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 16/185 (8%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANE 78
VLFV K + + TG+AF + AL ++R +G RY+E+FRS E + + A +
Sbjct: 890 VLFVKKPDGRATGDAFVLFAKEEDAVKALSKHRDCIGSRYIELFRSTIAEVQQVLNRAID 949
Query: 79 VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF----KDFVLS 134
V +P S +RLRGLP+ A + I++F K+ V
Sbjct: 950 PKQVVLPTPPIPQLPPILPQHIITSGTRKDCVRLRGLPYEALVEHILEFMGEHSKNIVY- 1008
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG--SRYIELFPSSHEEM 188
+H+ N+ G+P+GEAF++ ++E S A A R M G RYIE+F S ++M
Sbjct: 1009 -QGVHMVYNAQGQPSGEAFIQM-DSESSAYACASQRHHRYMIYGKKQRYIEVFQCSGDDM 1066
Query: 189 DEALS 193
+ L+
Sbjct: 1067 NLVLT 1071
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P S DE D+ ++R RGLP+ + DI FF+ +++ + + ++ GR GE
Sbjct: 740 PGICSKDEEVDNGC---VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGE 796
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
A V F N E A+ + + +G RYIE++ +S E+
Sbjct: 797 ALVRFVNKEHRDMALKRHKHHMGGRYIEVYKASGED 832
>gi|444525895|gb|ELV14190.1| Epithelial splicing regulatory protein 1, partial [Tupaia
chinensis]
Length = 689
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 28/192 (14%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E K +V
Sbjct: 370 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQKVFKIQVL 429
Query: 81 DVRGGS--------------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
+ + P + +P D +RLRGLP++A +DI+D
Sbjct: 430 NRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILD 479
Query: 127 FFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPS 183
F +F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F
Sbjct: 480 FLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQC 539
Query: 184 SHEEMDEALSRG 195
S EEM+ L G
Sbjct: 540 SAEEMNFVLMGG 551
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 25/153 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 291 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 334
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 335 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 391
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
E ++ A+ K + LG RYIELF S+ E+ +
Sbjct: 392 EYAQNALRKHKDLLGKRYIELFRSTAAEVQKVF 424
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 237 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 296
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 297 HKHHMGTRYIEVYKATGED 315
>gi|40548306|ref|NP_954966.1| epithelial splicing regulatory protein 2 [Danio rerio]
gi|28279592|gb|AAH45439.1| RNA binding motif protein 35B [Danio rerio]
Length = 736
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D AL R++ +MG RY+EV+++ +E+ K +NEV+
Sbjct: 279 DMALDRHKHHMGSRYIEVYKATGEEFLKIAGGTSNEVAQFL------------------- 319
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANA 159
S + I+R+RGLPF+A D++ F D + DGRPTG+AFV FA
Sbjct: 320 SKENQMIIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACE 379
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 380 EYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++Q +G+RY+E+FRS E + + +S
Sbjct: 358 LLFVKYPDGRPTGDAFVLFACEEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNRYMS 417
Query: 81 DVRGGSPHRSIPRAKSHDE-GKDSAVHTG----ILRLRGLPFSAGKDDIMDFFKDFV--L 133
+ P S + TG +RLRGLP++A +DI++F + +
Sbjct: 418 TPLISTLPPPPPPMVSVPVLATPPLITTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDI 477
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+H+ +N GRP+G+AF++ +A+ + A + + RY+E+F S EEM L
Sbjct: 478 KPHGVHMVLNQQGRPSGDAFIQMKSADRAFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVL 537
Query: 193 SRG 195
G
Sbjct: 538 MGG 540
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
A S E DS ++R RGLP+ + DI FFK +++ + + +N+ GR GEA
Sbjct: 213 ACSKTEAVDSET---VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEAL 269
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
V F N+E A+ + + +GSRYIE++ ++ EE
Sbjct: 270 VRFINSEHRDMALDRHKHHMGSRYIEVYKATGEE 303
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 41/61 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++R++GLP++AG DI+ FF+ + L DS+ + N G+ +GEA V F + + ++ A+A
Sbjct: 659 ALVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRAVA 718
Query: 168 K 168
+
Sbjct: 719 E 719
>gi|134047877|sp|Q7ZVR8.2|ESRP2_DANRE RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
Length = 736
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D AL R++ +MG RY+EV+++ +E+ K +NEV+
Sbjct: 279 DMALDRHKHHMGSRYIEVYKATGEEFLKIAGGTSNEVAQFL------------------- 319
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANA 159
S + I+R+RGLPF+A D++ F D + DGRPTG+AFV FA
Sbjct: 320 SKENQMIIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACE 379
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 380 EYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++Q +G+RY+E+FRS E + + +S
Sbjct: 358 LLFVKYPDGRPTGDAFVLFACEEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNRYMS 417
Query: 81 DVRGGSPHRSIPRAKSHDE-GKDSAVHTG----ILRLRGLPFSAGKDDIMDFFKDFV--L 133
+ P S + TG +RLRGLP++A +DI++F + +
Sbjct: 418 TPLISTLPPPPPPMVSVPVLATPPFITTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDI 477
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+H+ +N GRP+G+AF++ +A+ + A + + RY+E+F S EEM L
Sbjct: 478 KPHGVHMVLNQQGRPSGDAFIQMKSADRAFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVL 537
Query: 193 SRG 195
G
Sbjct: 538 MGG 540
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
A S E DS ++R RGLP+ + DI FFK +++ + + +N+ GR GEA
Sbjct: 213 ACSKTEAVDSET---VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEAL 269
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
V F N+E A+ + + +GSRYIE++ ++ EE
Sbjct: 270 VRFINSEHRDMALDRHKHHMGSRYIEVYKATGEE 303
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 41/61 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++R++GLP++AG DI+ FF+ + L DS+ + N G+ +GEA V F + + ++ A+A
Sbjct: 659 ALVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRAVA 718
Query: 168 K 168
+
Sbjct: 719 E 719
>gi|41351452|gb|AAH65688.1| Rbm35b protein [Danio rerio]
Length = 711
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D AL R++ +MG RY+EV+++ +E+ K +NEV+
Sbjct: 279 DMALDRHKHHMGSRYIEVYKATGEEFLKIAGGTSNEVAQFL------------------- 319
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANA 159
S + I+R+RGLPF+A D++ F D + DGRPTG+AFV FA
Sbjct: 320 SKENQMIIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACE 379
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 380 EYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++Q +G+RY+E+FRS E + + +S
Sbjct: 358 LLFVKYPDGRPTGDAFVLFACEEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNRYMS 417
Query: 81 DVRGGSPHRSIPRAKSHDE-GKDSAVHTG----ILRLRGLPFSAGKDDIMDFFKDFV--L 133
+ P S + TG +RLRGLP++A +DI++F + +
Sbjct: 418 TPLISTLPPPPPPMVSVPVLATPPFITTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDI 477
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+H+ +N GRP+G+AF++ +A+ + A + + RY+E+F S EEM L
Sbjct: 478 KPHGVHMVLNQQGRPSGDAFIQMKSADRAFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVL 537
Query: 193 SRG 195
G
Sbjct: 538 MGG 540
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
A S E DS ++R RGLP+ + DI FFK +++ + + +N+ GR GEA
Sbjct: 213 ACSKTESVDSET---VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEAL 269
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
V F N+E A+ + + +GSRYIE++ ++ EE
Sbjct: 270 VRFINSEHRDMALDRHKHHMGSRYIEVYKATGEE 303
>gi|118362902|ref|XP_001014867.1| hypothetical protein TTHERM_00051700 [Tetrahymena thermophila]
gi|89296443|gb|EAR94431.1| hypothetical protein TTHERM_00051700 [Tetrahymena thermophila
SB210]
Length = 967
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 101/175 (57%), Gaps = 9/175 (5%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F H N+ +F+GE Q+D ++ +NMG+RY+EVF +++ ++ +A +++
Sbjct: 386 ITFKHDNDGRFSGECVIRTKDQNQLDKIKDKHMRNMGKRYIEVFVAEQSDFVRAQDSQII 445
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
D + + ++ + + + + + I+++RGLP++A DI FFKD + ++ I
Sbjct: 446 D------DQKVGISQINSQIDPNLLQSANIVKIRGLPYNATDQDIQKFFKDSQIVQNGIQ 499
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ RP+GEAF+ FA +D++ A+ KD+ +GSRYIE+F S +E + +
Sbjct: 500 KVYDGK-RPSGEAFIIFATKQDAQKAIEKDKEKMGSRYIEIFLSHLKEFTNHIKK 553
Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
LRLRGLPF+A + +I F L +D I ++DGR +GE + + K
Sbjct: 359 LRLRGLPFNAREAEIQQFL-GISLEQDQITFKHDNDGRFSGECVIRTKDQNQLDKIKDKH 417
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
+G RYIE+F + + A
Sbjct: 418 MRNMGKRYIEVFVAEQSDFVRA 439
Score = 39.7 bits (91), Expect = 0.70, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 62 EVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG---ILRLRGLPFS 118
E+ + K Q +++E S+ R + I + + + K ++ G L+LRG+P++
Sbjct: 121 EILKLKNQNLTSKMSSESSNQR-----QIIDKEELWSDPKGLLINGGSHYFLKLRGIPYN 175
Query: 119 AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 178
A + ++ DF L + + + + + TGE F++ + + + + T+ +RYI
Sbjct: 176 AKESEVQDFL-GLTLDKYQMVFKYDKNEKFTGECFIKAKDQDQFDKIKSMHKKTMKNRYI 234
Query: 179 ELFPSSHEEMDEA 191
E+F + E +A
Sbjct: 235 EIFVADKIEFVQA 247
Score = 35.8 bits (81), Expect = 9.0, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
V+ + +GEAF + A++++++ MG RY+E+F S +E+ I S
Sbjct: 501 VYDGKRPSGEAFIIFATKQDAQKAIEKDKEKMGSRYIEIFLSHLKEFTNHIKKRKS 556
>gi|355693777|gb|AER99447.1| G-rich RNA sequence binding factor 1 [Mustela putorius furo]
Length = 360
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 154 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 213
Query: 75 IAN-------------------------EVS-DVRGGSPHRS-----IPRAKSH------ 97
+ + EVS D+R + S +P+ S
Sbjct: 214 VGSHKGKKMASSPTAKYITEPEMVFEEHEVSEDIRPMTAFESEKEIELPKEMSEKLPEAA 273
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S+G+ TGEA V
Sbjct: 274 DFGTASSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSNGKATGEADVH 327
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 328 FDTHEDAVAAMLKDRSHVHHRYIELFLNS 356
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 65 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 115
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 116 L----------MKSLQVKASPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 163
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 164 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 210
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 32 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 91
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 92 EKHRMYMGQRYVEVYEINNEDVD 114
>gi|328779875|ref|XP_397080.4| PREDICTED: epithelial splicing regulatory protein 2 [Apis
mellifera]
Length = 1215
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 22/169 (13%)
Query: 33 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP 92
GEA D AL+R++ +MG RY+EV+++ +++ +A S G H +
Sbjct: 798 GEALVRFVNKEHRDMALKRHKHHMGGRYIEVYKASGEDFV-GVAGGTS----GEAHAFLS 852
Query: 93 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDG 146
R I+R+RGLP+ ++ FF + ED + DG
Sbjct: 853 RGAQV-----------IVRMRGLPYDCVAKQVVXFFLSGQKPCHVLDGEDGVLFVKKPDG 901
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
R TG+AFV FA ED+ A++K R +GSRYIELF S+ E+ + L+R
Sbjct: 902 RATGDAFVLFAKEEDAVKALSKHRDCIGSRYIELFRSTIAEVQQVLNRA 950
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANE 78
VLFV K + + TG+AF + AL ++R +G RY+E+FRS E + + A +
Sbjct: 893 VLFVKKPDGRATGDAFVLFAKEEDAVKALSKHRDCIGSRYIELFRSTIAEVQQVLNRAID 952
Query: 79 VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSED 136
V +P S +RLRGLP+ A + I++F + +
Sbjct: 953 PKQVVLPTPPIPQLPPIVPQHIITSGTRKDCVRLRGLPYEALVEHILEFMGEHSKNIVYQ 1012
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG--SRYIELFPSSHEEMDE 190
+H+ N+ G+P+GEAF++ ++E S A A R M G RYIE+F S ++M+
Sbjct: 1013 GVHMVYNAQGQPSGEAFIQM-DSESSAYACASQRHHRYMIYGKKQRYIEVFQCSGDDMNL 1071
Query: 191 ALS 193
L+
Sbjct: 1072 VLT 1074
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 101 KDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
KD V G ++R RGLP+ + DI FF+ +++ + + ++ GR GEA V F N
Sbjct: 748 KDEEVDNGCVVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFVNK 807
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEE 187
E A+ + + +G RYIE++ +S E+
Sbjct: 808 EHRDMALKRHKHHMGGRYIEVYKASGED 835
>gi|291190682|ref|NP_001167168.1| Heterogeneous nuclear ribonucleoprotein H [Salmo salar]
gi|223648432|gb|ACN10974.1| Heterogeneous nuclear ribonucleoprotein H [Salmo salar]
Length = 396
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 23/164 (14%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
+ + +GEAF L + A++++R+ MG RYVEVF+S E + +
Sbjct: 45 REGRPSGEAFVELENEDDLKIAVKKDRETMGHRYVEVFKSNNVEMDWVMKHS-------- 96
Query: 87 PHRSIPRAKSHDEGKDSAVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 144
G +S TG ++RLRGLPF K++I+ F + + I + ++
Sbjct: 97 -------------GPNSPETTGDGLVRLRGLPFGCSKEEIVQFLSGLEIVPNGITLPLDF 143
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
GR TGEAFV+FA+ + ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 QGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEV 187
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S D++ FF D ++ + SIH T +GRP+GEAFVE N +D K A+
Sbjct: 8 VVRVRGLPWSCSVDEVRRFFSDCKIANNGTSIHFTSTREGRPSGEAFVELENEDDLKIAV 67
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD +
Sbjct: 68 KKDRETMGHRYVEVFKSNNVEMDWVM 93
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 34/185 (18%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE-------------------YY 72
TGEAF + AL+++++ +G RY+E+F+S R E Y
Sbjct: 148 TGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPQRKPMGMQRPGPYD 207
Query: 73 KAIANEVSDVRGGSPHRS------------IPRAKSHDEGKDSAVHTG-ILRLRGLPFSA 119
+ ++ GG S + + D TG + +RGLP+ A
Sbjct: 208 RPSGGRGYNMMGGRGGGSYDRARRGGYGGGVSDGRYGDSSSSFQSTTGHCVHMRGLPYRA 267
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
+ DI +FF L+ +H+ + DGR TGEA VEFA ED+ AAM+KD+ + RY+E
Sbjct: 268 TETDIYNFFSP--LNPVRVHVEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE 325
Query: 180 LFPSS 184
LF +S
Sbjct: 326 LFLNS 330
>gi|311262314|ref|XP_003129120.1| PREDICTED: G-rich sequence factor 1-like [Sus scrofa]
Length = 479
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
+ IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 272 LHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 331
Query: 75 IA-------------------------NEVS-DVRGGSPHRS-----IPRAKSH------ 97
+ NEV+ DVR + S +P+ S
Sbjct: 332 VGSHKGKKMASSPTAKYITEPEMAFEENEVNEDVRPMTAFESEKEIELPKEMSEKLPEAV 391
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 392 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 445
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 446 FETHEDAVAAMLKDRSHVHHRYIELFLNS 474
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 24/168 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 183 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 233
Query: 83 RGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141
+ H +S P V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 234 LMKNLHVKSTP-----------VVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVD--ITFV 280
Query: 142 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 281 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>gi|327274272|ref|XP_003221902.1| PREDICTED: g-rich sequence factor 1-like [Anolis carolinensis]
Length = 485
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A L V AL+++R+ +G+RYVEVF I NE D
Sbjct: 187 FLLNRDGKRRGDALVELESEQDVHNALEKHRRYLGQRYVEVFE---------IHNEDVDA 237
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS S + G++RLRGLP+S + DI DFF LS I M
Sbjct: 238 I----------MKSLQSSSTSVTNDGVVRLRGLPYSCTEVDISDFFSG--LSIIDITFVM 285
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEAFV+FA E + A+ K + +G+RYIE+FPS E+
Sbjct: 286 DQRGRRKTGEAFVQFATPEMANQALLKHKEEIGNRYIEIFPSQRSEI 332
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 99/207 (47%), Gaps = 45/207 (21%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE---- 70
+ I+D+ FV + + TGEAF P + AL ++++ +G RY+E+F S+R E
Sbjct: 276 LSIIDITFVMDQRGRRKTGEAFVQFATPEMANQALLKHKEEIGNRYIEIFPSQRSEIRTH 335
Query: 71 --YYK---------------AIANEVSDVRGGSPHRSIPRAKSHDEGKDS---------- 103
+++ ++ NE P + AK H+ K +
Sbjct: 336 NGFFRGKKMMGFPTTKQDSDSVFNEGDFNEALRPVAAYENAKEHELFKQAFERPRDLQES 395
Query: 104 ----AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
++H + LRGLPF A DI++FF + ITM NS G+ TGEA V F
Sbjct: 396 RSFPSLH--FVHLRGLPFQATAQDIINFFAPL----KPVRITMEYNSSGKATGEADVHFE 449
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAMAK+R + RYIELF +S
Sbjct: 450 THEDAIAAMAKNRSHVQHRYIELFLNS 476
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 6/98 (6%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGE 151
AKS +E +D ++R +GLP+S ++D+++FF + + IH +N DG+ G+
Sbjct: 143 AKSGEEEED----VYLIRAQGLPYSCTEEDVLNFFAGSKIRNGVNGIHFLLNRDGKRRGD 198
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
A VE + +D A+ K R LG RY+E+F +E++D
Sbjct: 199 ALVELESEQDVHNALEKHRRYLGQRYVEVFEIHNEDVD 236
>gi|301606650|ref|XP_002932936.1| PREDICTED: RNA-binding protein 12 [Xenopus (Silurana) tropicalis]
Length = 880
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 25/192 (13%)
Query: 20 VDVLFVHKN--NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
+D + V K+ + G A L P AL+RNR +G+R++EV + +++ + +
Sbjct: 332 IDGIVVLKDPMGRHNGSALVKLITPHDTFEALKRNRMLLGQRFIEVSPATERQWMVSAGH 391
Query: 78 EVSD----------------VRGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG 120
+ R SP +S PR++S E H + L+GLP+ A
Sbjct: 392 ILKPQNVGHHGPPPLMQQLITRSKSPSTQSRPRSRSPHE------HGFCVYLKGLPYEAE 445
Query: 121 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180
++DFFK + EDSI+I S+G+ TGE F+EF N ED K+A+ + + +G+R++++
Sbjct: 446 NKHVIDFFKKLDIVEDSIYIAYGSNGKATGEGFLEFRNEEDYKSALCRHKQYMGNRFVQV 505
Query: 181 FPSSHEEMDEAL 192
P + + M E +
Sbjct: 506 HPITKKAMLEKI 517
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVSLLLSSKTEMQNMIELSR 87
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
++R++ +PF+ D+I+DFF + L S+ + + G PTGEA V F + +++ AA+
Sbjct: 805 VIRVQNMPFTVTVDEILDFFYGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAAVVD 864
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 865 LNDR-PIGSRKVKL 877
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
L GLP + DI DFF L D I + + GR G A V+ D+ A+ ++RM
Sbjct: 311 LHGLPVPVSEADIKDFFHG--LRIDGIVVLKDPMGRHNGSALVKLITPHDTFEALKRNRM 368
Query: 172 TLGSRYIELFPSSHEEM 188
LG R+IE+ P++ +
Sbjct: 369 LLGQRFIEVSPATERQW 385
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 15/180 (8%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+V+V + K
Sbjct: 456 LDIVEDSIYIAYGSNGKATGEGFLEFRNEEDYKSALCRHKQYMGNRFVQVHPITK----K 511
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG----LPFSAGKDDIMDFF- 128
A+ ++ +R +S ++ D D+ RL G LP+S + DI FF
Sbjct: 512 AMLEKIDMIR--KKMQSYNYSEHKDAPLDAEFEKHGPRLWGHLSNLPYSIMRKDISHFFI 569
Query: 129 -KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
+ F + E+ + + ++++G+ G+A V+F + +D++ + R L R + L + EE
Sbjct: 570 SEGFAIDENFVQLLVDNNGQCIGQALVQFRSEDDARKSERLHRKKLNGRDVFLHIVNSEE 629
>gi|326917907|ref|XP_003205236.1| PREDICTED: epithelial splicing regulatory protein 1-like [Meleagris
gallopavo]
Length = 671
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 5/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV + +++ TG+AF + AL++++ +GRRY+E+FRS E + + N S
Sbjct: 358 VLFVTYPDSRPTGDAFVLFACEEYAQNALKKHKDLLGRRYIELFRSTAAEV-QQVLNRYS 416
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ +RLRGLP++A +DI+DF +F + +
Sbjct: 417 STPLIPLPTPPILPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGV 476
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + AA + T+ RYIE+F S EEM+ L G
Sbjct: 477 HMVLNHQGRPSGDAFIQMKSADRAFLAAQKCHKKTMKDRYIEVFQCSAEEMNFVLMGG 534
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 25/179 (13%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANE 78
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +NE
Sbjct: 255 ALCLNAQGRRNGEALVRFVNEEHRDLALQRHKHHMGNRYIEVYKATGEDFLKIAGGTSNE 314
Query: 79 VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SE 135
V+ K++ V I+R+RGLPF+ ++++ FF +
Sbjct: 315 VAQFLS----------------KENQV---IVRMRGLPFNVTTEEVLAFFGQHCPVTGGK 355
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + D RPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 356 EGVLFVTYPDSRPTGDAFVLFACEEYAQNALKKHKDLLGRRYIELFRSTAAEVQQVLNR 414
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F N E A+
Sbjct: 224 AVIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQ 283
Query: 168 KDRMTLGSRYIELFPSSHEE 187
+ + +G+RYIE++ ++ E+
Sbjct: 284 RHKHHMGNRYIEVYKATGED 303
>gi|37932182|gb|AAP69824.1| SWAN ribonucleoprotein [Xenopus laevis]
Length = 877
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 23/188 (12%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
V+ + G A L P AL+RNR MG+R++EV + +++ + +
Sbjct: 333 VILTDPMGRHNGSALVKLITPHDTFEALKRNRMLMGQRFIEVSPATERQWIVNGGHMLKQ 392
Query: 82 ----------------VRGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDI 124
R SP+ +S PR++S E H + L+GLP A +
Sbjct: 393 QNVGHHGPPPLMQQLITRSKSPNPQSRPRSRSPHE------HGFCVYLKGLPHEAENKHV 446
Query: 125 MDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+DFFK + EDSI+I S+G+ TGE F+EF N ED K+A+ + + +G+R++++ P +
Sbjct: 447 IDFFKKLNIVEDSIYIAYGSNGKATGEGFLEFRNEEDYKSALCRHKQYMGNRFVQVHPIT 506
Query: 185 HEEMDEAL 192
+ M E +
Sbjct: 507 KKAMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVSLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R++ +PF+ D+I+DFF + L S+ + + G PTGEA V F + +++ AA+
Sbjct: 802 VIRVQNMPFTVTVDEILDFFYGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAAVVD 861
Query: 169 -DRMTLGSRYIEL 180
+ +GSR ++L
Sbjct: 862 LNERPIGSRKVKL 874
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N K TGE F AL R++Q MG R+V+V + KA+ ++ +
Sbjct: 467 NGKATGEGFLEFRNEEDYKSALCRHKQYMGNRFVQVHPITK----KAMLEKIDMI----- 517
Query: 88 HRSIPRAKSHDEGKDSAVHTGI----LRLRG----LPFSAGKDDIMDFF--KDFVLSEDS 137
H+ + ++ ++ E KD+ + RL G LP+S + DI FF + F + E++
Sbjct: 518 HKKM-QSYNYGEHKDAPLDAEFDKHGPRLWGHLSNLPYSIMRKDISHFFISEGFAIDENA 576
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ + +++G+ G+A V+F + +D++ + R L R + L + EE ++
Sbjct: 577 VQLLTDNNGQCIGQALVQFRSEDDARKSERLHRKKLNGRDVFLHIVNAEERND 629
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
L GLP + DI + F + D I I + GR G A V+ D+ A+ ++RM
Sbjct: 308 LHGLPLPVSEADIKELFHGLRI--DGIVILTDPMGRHNGSALVKLITPHDTFEALKRNRM 365
Query: 172 TLGSRYIELFPSSHEEM 188
+G R+IE+ P++ +
Sbjct: 366 LMGQRFIEVSPATERQW 382
>gi|322778928|gb|EFZ09344.1| hypothetical protein SINV_16613 [Solenopsis invicta]
Length = 565
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 22/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ +MG RY+EV+++ +++ V+ G H + R
Sbjct: 32 DMALKRHKHHMGTRYIEVYKASGEDFVG-----VAGGTSGEAHAFLSRGAQ--------- 77
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ +++FF+ + ED + DGR TG+AFV FA
Sbjct: 78 --VIVRMRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFVKKPDGRATGDAFVLFAKE 135
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
ED+ A++K R +GSRYIELF S+ E+ + L+R
Sbjct: 136 EDAVKALSKHRDCIGSRYIELFRSTTAEVQQVLNRA 171
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 25/197 (12%)
Query: 15 QLMDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY 72
Q++D D VLFV K + + TG+AF + AL ++R +G RY+E+FRS E
Sbjct: 106 QVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDAVKALSKHRDCIGSRYIELFRSTTAEVQ 165
Query: 73 KAIANEVSDVRGGSPHRSIPRAKSHDEGK--------DSAVHTGILRLRGLPFSAGKDDI 124
+ + N +D P + I + S +RLRGLP+ A + I
Sbjct: 166 QVL-NRATD-----PKQMILPPPPIAQLPPLLPQHIITSGTRKDCVRLRGLPYEALVEHI 219
Query: 125 MDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG--SR 176
++F + + +H+ N+ G+P+GEAF++ ++E S A A R M G R
Sbjct: 220 LEFMGEHSKNIVYQGVHMVYNAQGQPSGEAFIQM-DSEASAYACASQRHHRYMIYGKKQR 278
Query: 177 YIELFPSSHEEMDEALS 193
YIE+F S ++M+ L+
Sbjct: 279 YIEVFQCSGDDMNLVLT 295
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
+ + ++ GR GEA V F N E A+ + + +G+RYIE++ +S E+
Sbjct: 7 VALCLSPMGRRNGEALVRFINKEHRDMALKRHKHHMGTRYIEVYKASGED 56
>gi|348516774|ref|XP_003445912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Oreochromis niloticus]
Length = 406
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 19/157 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF + A++++R+ MG RYVEVF+S E + + +
Sbjct: 49 SGEAFVEFETEEDLKIAVKKDRETMGHRYVEVFKSNNVEMDWVMKHTGPNC--------- 99
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
G++RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 100 ----------PETAGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGE 149
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
AFV+FA+ + ++ A+ K + +G RYIE+F SS E+
Sbjct: 150 AFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEV 186
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDF-VLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S D++ FF D +L+ S IH T +GRP+GEAFVEF ED K A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSDCKILNNGSGIHFTYTREGRPSGEAFVEFETEEDLKIAV 66
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD +
Sbjct: 67 KKDRETMGHRYVEVFKSNNVEMDWVM 92
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 32/193 (16%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE---YYKAIANE 78
L V + TGEAF + AL+++++ +G RY+E+F+S R E +Y+
Sbjct: 137 TLPVDIQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPQRKP 196
Query: 79 VSDVR--------GGSPHRSIPRAKSHDE------------------GKDSAVHTG-ILR 111
+ R GG + + R S+D G TG +
Sbjct: 197 MGMQRPGPYDRPSGGRGYNMMGRGGSYDRMRRGGYGGGVSDGRYGDGGSSFQSTTGHCVH 256
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RGLP+ A + DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+KD+
Sbjct: 257 MRGLPYRATETDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 314
Query: 172 TLGSRYIELFPSS 184
+ RY+ELF +S
Sbjct: 315 NMQHRYVELFLNS 327
>gi|351714741|gb|EHB17660.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 396
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 23/178 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTI + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S +
Sbjct: 33 CTIRD---GVAGVHFIYTREGRQSGEAFVELESEEDVKTALKKDRESMGHRYIEVFKSHK 89
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + SP+ S D DS V RL GL F K +I+ FF
Sbjct: 90 TEMDWVLKHS-------SPN-------STDTANDSFV-----RLWGLSFGCTKGEIVQFF 130
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
+ + I + ++ +G+ TG+AF++FA+ E ++ A+ K + +G RYIE+F SS E
Sbjct: 131 SGLEIVPNGITLPVDPEGKFTGKAFLQFASQELAEKALRKHKEKIGHRYIEVFKSSQE 188
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + ED K A+
Sbjct: 11 VVKLRGLPWSCSTEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEEDVKTAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHKTEMDWVL 96
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+ +RGLP+ A ++DI +FF L+ +HI + +GR TGEA VEFA E++ AAM+
Sbjct: 290 VHMRGLPYKATENDIYNFFSP--LNAVRVHIEIRPNGRVTGEADVEFATNEEAMAAMSKD 347
Query: 168 KDRMTLGSRYIELFPSS 184
KDR + RYIELF +S
Sbjct: 348 KDRTNIQHRYIELFLNS 364
>gi|308464398|ref|XP_003094466.1| CRE-TWK-4 protein [Caenorhabditis remanei]
gi|308247695|gb|EFO91647.1| CRE-TWK-4 protein [Caenorhabditis remanei]
Length = 1026
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 18/149 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R+R + RY+EV YKA +E V GS S + + +
Sbjct: 638 DLALKRHRNFLLSRYIEV--------YKAGLDEFMHVATGS---------SIEAMEFVSA 680
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
+ I+R+RGLP+ I FF+ L++ + IT +DGRPTG+AFV+F ED++
Sbjct: 681 NAVIVRMRGLPYDCTDTQIRAFFEPLKLTDKILFIT-RTDGRPTGDAFVQFETEEDAQKG 739
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ K R +G RYIELF S+ E+ + + R
Sbjct: 740 LLKHRQIIGQRYIELFKSTAAEVQQVVKR 768
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 16/176 (9%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LF+ + + + TG+AF L ++RQ +G+RY+E+F+S E + +
Sbjct: 712 ILFITRTDGRPTGDAFVQFETEEDAQKGLLKHRQIIGQRYIELFKSTAAEVQQVVKR--C 769
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSI 138
++ SP + ++ KD +RLRGLP+ A I+ F DF ++ +
Sbjct: 770 NLINSSPAVTNAVEAPEEKKKDC------VRLRGLPYEATVQHIVTFLGDFAQMVKFQGV 823
Query: 139 HITMNSDGRPTGEAFVEFAN---AEDSKAAMAKDRMTLG--SRYIELFPSSHEEMD 189
H+ N+ G P+GEAF++ + A + A + + M +G RYIE+F SS EE++
Sbjct: 824 HMVYNNQGNPSGEAFIQLISEAAAAATAAGVHNNFMCVGKKKRYIEVFQSSAEELN 879
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
+R P + H+ G D + R RGLP+ A + FF + I + ++S+GR
Sbjct: 565 YRPAPILEEHNLGIDG--DNVVCRARGLPWQASDQHVAQFFAGLDIVPGGIALCLSSEGR 622
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
GE V+FA E A+ + R L SRYIE++ + +E
Sbjct: 623 RNGEVLVQFATQESRDLALKRHRNFLLSRYIEVYKAGLDE 662
>gi|443701155|gb|ELT99751.1| hypothetical protein CAPTEDRAFT_226859 [Capitella teleta]
Length = 390
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 92/167 (55%), Gaps = 13/167 (7%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGG 85
K+ + +GEA+ L V AL++++ +MGRRY+E +S Y + E+ V+
Sbjct: 55 KDGRPSGEAYIELASEEDVAKALEKDKHHMGRRYIEGMQSSLYLIYNHVDLEMEWMVKRS 114
Query: 86 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 145
P++ + G + AV +RLRGLPF K+++ FF + + I + +
Sbjct: 115 GPNQVM--------GNNDAV----IRLRGLPFGCSKEEVAHFFSGLEIVPNGITLMQDGQ 162
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
GR TG+AFV+FA+ + ++ A K + +G RYIE+F SS +E+ ++
Sbjct: 163 GRSTGDAFVQFASQDIAERAQQKHKEKIGHRYIEIFKSSLQELRNSM 209
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFK---DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
I+R+RGLP+SA D++ +F + + + IH+T DGRP+GEA++E A+ ED A
Sbjct: 17 IVRIRGLPWSASHDEVANFLEADVNIMGGRSGIHLTYTKDGRPSGEAYIELASEEDVAKA 76
Query: 166 MAKDRMTLGSRYIELFPSS 184
+ KD+ +G RYIE SS
Sbjct: 77 LEKDKHHMGRRYIEGMQSS 95
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 34/185 (18%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG+AF + A Q++++ +G RY+E+F+S QE ++ ++ RGG ++
Sbjct: 166 TGDAFVQFASQDIAERAQQKHKEKIGHRYIEIFKSSLQELRNSMVPKMMGGRGGGMGGNM 225
Query: 92 PRAKSHDEG------------------------------KDSAVHTGILRLRGLPFSAGK 121
R +D + + H+ + +RGLPF A +
Sbjct: 226 GRPGPYDRMDRMGGGGGGGMGRGGGRFGPGGGKGGMDNYESTTGHS--VHMRGLPFQAAE 283
Query: 122 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
DDI++FFK +IH DG+ +G+A V+FA +++ AM++DR ++ RYIELF
Sbjct: 284 DDIVEFFKPLAPVNIAIHYM--PDGKASGQADVDFATHQEASEAMSRDRESMEHRYIELF 341
Query: 182 PSSHE 186
S E
Sbjct: 342 LKSSE 346
>gi|348500206|ref|XP_003437664.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Oreochromis niloticus]
Length = 741
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D AL+R++ +MG RY+EV+++ +E+ K +NEV+ K+
Sbjct: 279 DLALERHKHHMGSRYIEVYKATGEEFLKIAGGTSNEVAQFLS----------------KE 322
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFF---KDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A +++ F + + DGRPTG+AFV F+
Sbjct: 323 NQV---IIRMRGLPFTATPQEVLAFLGPESPVTDGTEGLLFVKYPDGRPTGDAFVLFSCE 379
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 380 EYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 95/188 (50%), Gaps = 20/188 (10%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++Q +G+RY+E+FRS E + + +S
Sbjct: 358 LLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNRYMS 417
Query: 81 D----------VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
+ + P + +D +RLRGLP++AG +DI++F +
Sbjct: 418 TPLISTLPPSPIVPVPVLTTPPFLPAASSTRDC------VRLRGLPYTAGIEDILEFMGE 471
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
+ +H+ +N GRP+G+AF++ + + + A + T+ RY+E+F S EE
Sbjct: 472 HTVDIKPHGVHMVLNQQGRPSGDAFIQMKSPDKAFMVAQKCHKKTMKDRYVEVFQCSTEE 531
Query: 188 MDEALSRG 195
M L G
Sbjct: 532 MSIVLMGG 539
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + + +N+ GR GEA V F N+E A+ +
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDLALER 284
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ EE
Sbjct: 285 HKHHMGSRYIEVYKATGEE 303
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 40/61 (65%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++R++GLP++ G DI+ FF+ + L D++ I N G+ +GEA + F + E ++ A+A
Sbjct: 664 ALVRMQGLPYNTGVKDILSFFQGYQLQPDAVLILYNFSGQCSGEALITFPSEEIARRAVA 723
Query: 168 K 168
+
Sbjct: 724 E 724
>gi|159469283|ref|XP_001692797.1| splicing factor [Chlamydomonas reinhardtii]
gi|158278050|gb|EDP03816.1| splicing factor [Chlamydomonas reinhardtii]
Length = 647
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 27/183 (14%)
Query: 18 DIVDVLFVHKNNKFTGEAFCVL-GYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
++ V+ + + TGE + L D + +RQ +G RY+EVF S + A +
Sbjct: 50 EVATVVIGKRAGRSTGEGYVQLDSVAAAADAIAKLHRQTLGHRYIEVFESTEADLATAKS 109
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK---DFVL 133
V +RG ++R RGLP+++ D+++FF V
Sbjct: 110 LSVDRMRGF-----------------------VIRCRGLPYTSTAQDVLNFFGADVPIVR 146
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+ + T DGRPTGEAFVE E + A+ K + +LGSRYIELF S+ +M +A+
Sbjct: 147 GIEGVVFTYAPDGRPTGEAFVELQTEEAQREALKKHKESLGSRYIELFVSTKVDMIQAIQ 206
Query: 194 RGR 196
+ R
Sbjct: 207 QNR 209
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
++ +G S + +LRLRGLPFSAG+DD+ FF DF E + + GR TGE +V
Sbjct: 13 ETAPDGVPSVPKSTVLRLRGLPFSAGEDDVRQFFADF---EVATVVIGKRAGRSTGEGYV 69
Query: 155 EFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALS 193
+ + + A+AK R TLG RYIE+F S+ ++ A S
Sbjct: 70 QLDSVAAAADAIAKLHRQTLGHRYIEVFESTEADLATAKS 109
>gi|410957462|ref|XP_003985346.1| PREDICTED: G-rich sequence factor 1 [Felis catus]
Length = 361
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 46/208 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 75 IAN------------------------EVS-DVRGGSPHRS-----IPRAKSH------D 98
+ + EV+ D+R + S +P+ S D
Sbjct: 215 VGSHKGKKMTSPTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEIELPKEMSEKLPEAVD 274
Query: 99 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEF 156
G S++H + +RGLPF A DI++FF + ITM +S+G+ TGEA V F
Sbjct: 275 FGTPSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSNGKATGEADVHF 328
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 329 DTHEDAVAAMLKDRSHVHHRYIELFLNS 356
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 86/167 (51%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 66 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 116
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS AV+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 117 L----------MKSLQVKSSPAVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 164
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 165 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|426231834|ref|XP_004009942.1| PREDICTED: G-rich sequence factor 1 [Ovis aries]
Length = 362
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 24/168 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 66 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 116
Query: 83 RGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141
S H +S P V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 117 LMKSLHVKSAP-----------VVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 163
Query: 142 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 164 MDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 92/207 (44%), Gaps = 43/207 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ + SP + I K E AV
Sbjct: 215 VGSHKGKKIASSPTAKYITEPEVVFEEHEVNEDIRPMTAFESEKEIESPKEMSEKLPEAV 274
Query: 106 HTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G + +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 275 DFGTTSSLHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFD 330
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 331 THEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|71998567|ref|NP_495960.2| Protein SYM-2 [Caenorhabditis elegans]
gi|74966269|sp|Q22708.3|SYM2_CAEEL RecName: Full=RNA-binding protein sym-2; AltName: Full=Synthetic
lethal with mec-8 protein 2
gi|29165341|gb|AAO65265.1| putative RNA binding protein SYM-2 [Caenorhabditis elegans]
gi|33300449|emb|CAA93887.2| Protein SYM-2 [Caenorhabditis elegans]
Length = 618
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 18/149 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R+R + RY+EV YKA +E V GS S + + +
Sbjct: 236 DLALKRHRNFLLSRYIEV--------YKAGLDEFMHVATGS---------STEAMEFVSA 278
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
+ I+R+RGLP+ I FF+ L++ + IT +DGRPTG+AFV+F ED++
Sbjct: 279 NAIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFIT-RTDGRPTGDAFVQFETEEDAQQG 337
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ K R +G RYIELF S+ E+ + + R
Sbjct: 338 LLKHRQVIGQRYIELFKSTAAEVQQVVKR 366
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LF+ + + + TG+AF L ++RQ +G+RY+E+F+S E + +
Sbjct: 310 ILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKR--C 367
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSI 138
++ SP + ++ KD +RLRGLP+ A I+ F DF ++ +
Sbjct: 368 NLINSSPAVANAVEAPEEKKKDC------VRLRGLPYEATVQHIVTFLGDFATMVKFQGV 421
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMA---KDRMTLG--SRYIELFPSSHEEMD 189
H+ N+ G P+GEAF++ N + + A A + M++G RYIE+F +S EE++
Sbjct: 422 HMVYNNQGHPSGEAFIQMINEQAASACAAGVHNNFMSVGKKKRYIEVFQASAEELN 477
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ R RGLP+ A + FF + I + ++S+GR GE V+F++ E A+ +
Sbjct: 182 VCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALKR 241
Query: 169 DRMTLGSRYIELFPSSHEE 187
R L SRYIE++ + +E
Sbjct: 242 HRNFLLSRYIEVYKAGLDE 260
>gi|301768278|ref|XP_002919563.1| PREDICTED: g-rich sequence factor 1-like [Ailuropoda melanoleuca]
Length = 717
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 97/209 (46%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 510 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 569
Query: 75 IANEVSDVRGGSPHRS-------------------------------IPRAKSH------ 97
+ + SP +P+ S
Sbjct: 570 VGSHKGKKMSSSPTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEIELPKEMSEKLPEAV 629
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S+G+ TGEA V
Sbjct: 630 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSNGKATGEADVH 683
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 684 FDTHEDAVAAMLKDRSHVHHRYIELFLNS 712
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 421 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 471
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 472 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 519
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 520 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 566
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 388 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 447
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 448 EKHRMYMGQRYVEVYEINNEDVD 470
>gi|73975377|ref|XP_532402.2| PREDICTED: G-rich sequence factor 1 [Canis lupus familiaris]
Length = 372
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 97/209 (46%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 165 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 224
Query: 75 IANEVSDVRGGSPHRS-------------------------------IPRAKSH------ 97
+ + SP +P+ S
Sbjct: 225 VGSHKGKKMASSPTAKYITEPEMAFEEHEVNEDIRPMTAFESEKEIELPKEMSEKLPEAV 284
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S+G+ TGEA V
Sbjct: 285 DFGATSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSNGKATGEADVH 338
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 339 FDTHEDAVAAMLKDRSHVHHRYIELFLNS 367
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 76 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 126
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 127 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 174
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 175 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 221
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 43 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 102
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 103 EKHRMYMGQRYVEVYEINNEDVD 125
>gi|344284915|ref|XP_003414210.1| PREDICTED: G-rich sequence factor 1 [Loxodonta africana]
Length = 484
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 94/207 (45%), Gaps = 43/207 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 277 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 336
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ + SP + I K E AV
Sbjct: 337 VGSHKGKKMASSPTAKYITEPEMVFEEHEVNEDIPAMTTFESEKEIELPKEMSEKLPEAV 396
Query: 106 HTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G + +RGLPF A DI++FF + ITM +S G+ TGEA V F+
Sbjct: 397 DFGATPSVHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFS 452
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 453 THEDAVAAMLKDRSHVHHRYIELFLNS 479
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL ++R MG+RYVEV+ I NE D
Sbjct: 188 FLLNRDGKRRGDALIEMESQQDVQKALGKHRMYMGQRYVEVYE---------INNEDVDA 238
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 239 L----------MKSLQVKASPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 286
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 287 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 333
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 155 LIRAQGLPWSCTVEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESQQDVQKAL 214
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 215 GKHRMYMGQRYVEVYEINNEDVD 237
>gi|432909348|ref|XP_004078165.1| PREDICTED: epithelial splicing regulatory protein 1-like [Oryzias
latipes]
Length = 656
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 25/158 (15%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + D+
Sbjct: 299 DLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTTNEVAMFLSREDQI----- 345
Query: 106 HTGILRLRGLPFSAGKDDIMDFF--KDFVL-------SEDSIHITMNSDGRPTGEAFVEF 156
I+R+RGLPF+A + ++ FF KD + +D I DGRPTG+AFV F
Sbjct: 346 ---IVRMRGLPFTATYEQVLAFFSPKDGLNETCPVSGGKDGILFVRYPDGRPTGDAFVLF 402
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ E + A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 403 SCEEHALCALRKHKEILGKRYIELFKSTAAEVQQVLNR 440
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%)
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
A+ +E S +P R + +S K+ ++R RGLP+ + DI FF+ +
Sbjct: 210 ALLSEHSCNAFSNPERVNEKFESGTCKKEKVCDNTVIRARGLPWQSSDQDIARFFRGLNI 269
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 270 AKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGED 323
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+F+S E + + S
Sbjct: 384 ILFVRYPDGRPTGDAFVLFSCEEHALCALRKHKEILGKRYIELFKSTAAEVQQVLNRYSS 443
Query: 81 -DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDS 137
+ +P + S LRLRGLP++A +DI+ F +F +
Sbjct: 444 TPLIPVAPAPLLSMLPSVSLLPPPGCVRDCLRLRGLPYTASIEDILAFLGEFTHDIRPHG 503
Query: 138 IHITMN 143
+H+ +N
Sbjct: 504 VHMVLN 509
>gi|281347672|gb|EFB23256.1| hypothetical protein PANDA_008197 [Ailuropoda melanoleuca]
Length = 362
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 103/209 (49%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 75 IAN-------------------------EVS-DVRGGSPHRS-----IPRAKSH------ 97
+ + EV+ D+R + S +P+ S
Sbjct: 215 VGSHKGKKMSSSPTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEIELPKEMSEKLPEAV 274
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S+G+ TGEA V
Sbjct: 275 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSNGKATGEADVH 328
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 329 FDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 66 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 116
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 117 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 164
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 165 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|440905001|gb|ELR55451.1| G-rich sequence factor 1, partial [Bos grunniens mutus]
Length = 362
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 24/168 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 66 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 116
Query: 83 RGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141
S H +S P V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 117 LMKSLHVKSAP-----------MVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 163
Query: 142 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 164 MDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 101/209 (48%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 73 ------KAIANEVS------------------DVRGGSPHRS-----IPRAKSH------ 97
K IA+ + D+R + S +P+ S
Sbjct: 215 VGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEIELPKEMSEKIPEAV 274
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 275 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 328
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 329 FDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|440906249|gb|ELR56534.1| Epithelial splicing regulatory protein 1, partial [Bos grunniens
mutus]
Length = 715
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 20/184 (10%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E ++
Sbjct: 396 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVLNRFSSAPL 455
Query: 81 DVRGGS------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV-- 132
P + +P D +RLRGLP++A +DI+DF +F
Sbjct: 456 IPLPTPPIIPVLPQQFVPPTNIRD----------CIRLRGLPYAATIEDILDFLGEFSTD 505
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
+ +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EEM+
Sbjct: 506 IRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFV 565
Query: 192 LSRG 195
L G
Sbjct: 566 LMGG 569
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 25/149 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 317 DLALQRHKHHMGSRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 360
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA
Sbjct: 361 NQV---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 417
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
E ++ A+ K + LG RYIELF S+ E+
Sbjct: 418 EYAQNALRKHKDLLGKRYIELFRSTAAEV 446
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 263 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 322
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +GSRYIE++ ++ E+
Sbjct: 323 HKHHMGSRYIEVYKATGEDF 342
>gi|151555768|gb|AAI49234.1| GRSF1 protein [Bos taurus]
Length = 362
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 24/168 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 66 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 116
Query: 83 RGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141
S H +S P V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 117 LMKSLHVKSAP-----------MVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 163
Query: 142 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 164 MDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 101/209 (48%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 73 ------KAIANEVS------------------DVRGGSPHRS-----IPRAKSH------ 97
K IA+ + D+R + S +P+ S
Sbjct: 215 VGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEIELPKEMSEKIPEAV 274
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 275 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 328
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 329 FDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|340372253|ref|XP_003384659.1| PREDICTED: epithelial splicing regulatory protein 1-like
[Amphimedon queenslandica]
Length = 848
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 12/173 (6%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 85
+ + K +G+AF V V+ AL+++R N+ RY+EVF S +E+ + + G
Sbjct: 344 YPDGKASGDAFAVFSSEAHVEEALKKHRNNLMGRYIEVFHSSLKEFLVVLN------KSG 397
Query: 86 SPH---RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHI 140
+P R S K ++LRGLP+ A +D++ FF D + + IH+
Sbjct: 398 TPEQLDRGGGGGGSGGASKRGGSEKNCVKLRGLPWEATPEDVISFFGDLNRSIEQQGIHM 457
Query: 141 TMNSDGRPTGEAFVEFANAE-DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+N+ RPTG+ FV+ + + ++AA R +G RYIE+F S ++ AL
Sbjct: 458 VLNAQSRPTGDCFVQMTSVDAATRAANELHRQNIGRRYIEVFQVSGNDVTYAL 510
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TGEA VL Q FALQR+R + +RYVEV+ + ++ + D G S
Sbjct: 253 TGEAIVVLEGEDQAQFALQRDRHYLHQRYVEVYEASPDNFF-----QFCDTTGSS----- 302
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRP 148
V T +R++GLP+ A + DIM+FF+ D I I DG+
Sbjct: 303 -----------EKVFT--VRMQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKA 349
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+G+AF F++ + A+ K R L RYIE+F SS +E L++
Sbjct: 350 SGDAFAVFSSEAHVEEALKKHRNNLMGRYIEVFHSSLKEFLVVLNK 395
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 107
A + +RQN+GRRY+EVF+ + A+ + R G H + K V +
Sbjct: 483 ANELHRQNIGRRYIEVFQVSGNDVTYALMDTGGGSRPGGGHAYYGGGGGNKRKK---VSS 539
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++ RGLPF+ + D++DFF DF + E I + N +GR TG A++ F + D++ A+
Sbjct: 540 AVVKARGLPFNTKEYDLVDFFADFNVDESDIELIYNHNGRSTGVAYINFQSLNDARQAV 598
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+ ++RLRGLPFSA +DI F + + ++N GR TGEA V +
Sbjct: 206 DNVCDGCVVRLRGLPFSADHNDIALFLSGLNIIPGGVVFSINPVGRRTGEAIVVLEGEDQ 265
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
++ A+ +DR L RY+E++ +S
Sbjct: 266 AQFALQRDRHYLHQRYVEVYEAS 288
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 52 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK-DSAVHTGIL 110
NR +G RYV++ +A D +I +S D+ K + I+
Sbjct: 724 NRHYLGNRYVDLIPCSNYYAKYQVARMKRD--------NIKSTESIDDKKLNRLTPLTII 775
Query: 111 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-D 169
+ GLPFSA D+++FF +F + +I+I + R G AFV F + D+ A+ K D
Sbjct: 776 KAGGLPFSANVTDLVNFFVEFNVPASNINIVYDGTNRSVGIAFVGFQSRSDAVDAVKKLD 835
Query: 170 RMTLGSRYIEL 180
R +G RY++L
Sbjct: 836 REYIGRRYVDL 846
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGR 147
+ P ++ E + V L L+G+P+ D + FF D + ED IH+ + G+
Sbjct: 642 ATPSGEAEGESVNQGVIQNCLLLKGIPWETTVDKVTAFFGDLSSNIVEDGIHLLYDKFGQ 701
Query: 148 PTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 185
TG+ V +A + A+ +R LG+RY++L P S+
Sbjct: 702 STGQCIVHMTDAASVQNAVGMLNRHYLGNRYVDLIPCSN 740
>gi|351695486|gb|EHA98404.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 348
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 19/141 (13%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 107
AL+ +R++MG RY+EVF S E + + + D S D K
Sbjct: 2 ALKNDRESMGHRYLEVFESHGTETDRVLKHSGPD--------------SADSAKG----- 42
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+
Sbjct: 43 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALR 102
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS +E+
Sbjct: 103 KHKERIGHRYIEVFKSSQQEV 123
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+ +RGLP+ A ++DI +FF L+ +HI + +GR TGEA VEFA E++ AAM+
Sbjct: 221 CVHMRGLPYKATENDIYNFFSP--LNAVRVHIEIRPNGRVTGEADVEFATNEEAMAAMSK 278
Query: 168 -KDRMTLGSRYIELFPSS 184
KDR + RYIELF +S
Sbjct: 279 DKDRTNIQHRYIELFLNS 296
Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L V K TGEAF + AL+++++ +G RY+EVF+S +QE
Sbjct: 74 TLPVDPEGKITGEAFVQFASQELAEKALRKHKERIGHRYIEVFKSSQQE 122
>gi|324506224|gb|ADY42662.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 416
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 18/173 (10%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84
+ + + +GE + L V AL+ +R + RY+EVF E + + V +RG
Sbjct: 38 LTSSGRASGECYVELNDNSAVKEALKLDRNEINGRYIEVFTVSEGELAMMVRHGV--IRG 95
Query: 85 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 144
E + ++RLRGLP+SA DDI +FFK +++ + I
Sbjct: 96 SG------------ESESRYASNYVVRLRGLPYSANVDDIKEFFKGLDVAD--VVIDKEQ 141
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL--SRG 195
GRP+GEAFV A+ E ++ A+ + + +GSRY+E+F SS EEMD + SRG
Sbjct: 142 GGRPSGEAFVRLASKEHAELALERSKNNMGSRYVEVFRSSGEEMDNSFYTSRG 194
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
T +RLRGLPF+A + D+ +F + ++ SI T+ S GR +GE +VE + K A
Sbjct: 4 ETNFIRLRGLPFAAKESDVRNFLQG--ITAKSITFTLTSSGRASGECYVELNDNSAVKEA 61
Query: 166 MAKDRMTLGSRYIELFPSSHEEM 188
+ DR + RYIE+F S E+
Sbjct: 62 LKLDRNEINGRYIEVFTVSEGEL 84
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RGLP++ DI +FFK E I + N D R +G+ V F+ +++ A+++++
Sbjct: 275 MRGLPYNVTALDIEEFFKPLNCVE--IKLGYNEDRRLSGDGIVLFSTMAEARDALSRNKN 332
Query: 172 TLGSRYIELFPSSH 185
+GSRYIELFP ++
Sbjct: 333 NIGSRYIELFPGTN 346
>gi|291401649|ref|XP_002717080.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like, partial
[Oryctolagus cuniculus]
Length = 482
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 93/207 (44%), Gaps = 43/207 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 275 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 334
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ + SP + I K E AV
Sbjct: 335 VGSHKGKKMASSPTAKYITEPEVVFEEHEVNEDIRPITAFESEKEIELPKEMSEKLPEAV 394
Query: 106 HTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G + +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 395 DLGTTPSLHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFE 450
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 451 THEDAVAAMLKDRSHVHHRYIELFLNS 477
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 186 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 236
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 237 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 284
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 285 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 331
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 153 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 212
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 213 EKHRMYMGQRYVEVYEINNEDVD 235
>gi|123704039|ref|NP_001074045.1| epithelial splicing regulatory protein 1 [Danio rerio]
gi|143360736|sp|A1L1G1.1|ESRP1_DANRE RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|120537378|gb|AAI29045.1| RNA binding motif protein 35A [Danio rerio]
Length = 714
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+
Sbjct: 280 DLALQRHKHHMGGRYIEVYKATGEDFLKIAGGTSNEVASFL------------------- 320
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANA 159
S + I+R+RGLPF+A + ++ FF D I DGRPTG+AFV F+
Sbjct: 321 SRENQIIVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L++
Sbjct: 381 EHAQNALKKHKDMLGKRYIELFKSTAAEVQQVLNK 415
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 98/187 (52%), Gaps = 18/187 (9%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + TG+AF + AL++++ +G+RY+E+F+S E + + N+ S
Sbjct: 359 ILFVRFPDGRPTGDAFVLFSCEEHAQNALKKHKDMLGKRYIELFKSTAAEV-QQVLNKYS 417
Query: 81 DVR----GGSPHRSIPRAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFV- 132
SP S+ + +A G+ +RLRGLP+ A DI+ F ++
Sbjct: 418 SAPLIPVAPSPILSVVAPPTFV--PQTAAVPGVRDCVRLRGLPYDASIQDILVFLGEYGA 475
Query: 133 -LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM---TLGSRYIELFPSSHEEM 188
+ +H+ +N GRP+GEAF++ +AE +A +A R ++ RY+E+F S +E+
Sbjct: 476 DIKTHGVHMVLNHQGRPSGEAFIQMRSAE--RAFLAAQRCHKRSMKERYVEVFACSAQEV 533
Query: 189 DEALSRG 195
+ L G
Sbjct: 534 NIVLMGG 540
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FF+ +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ E+
Sbjct: 286 HKHHMGGRYIEVYKATGED 304
>gi|395512150|ref|XP_003760307.1| PREDICTED: epithelial splicing regulatory protein 1 [Sarcophilus
harrisii]
Length = 550
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 25/152 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 279 DLALQRHKHHMGNRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 322
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 323 NQV---IVRMRGLPFTATAEEVLAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 379
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
E ++ A+ K + LG RYIELF S+ E+ +
Sbjct: 380 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQG 411
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 225 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 285 HKHHMGNRYIEVYKATGED 303
>gi|432879057|ref|XP_004073431.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 413
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 19/157 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF + + A++++R+ MG RYVEVF+S E + + +
Sbjct: 49 SGEAFVEMETEEDLKVAVKKDRETMGHRYVEVFKSNNVEMDWVMKHTGPNC--------- 99
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
G++RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 100 ----------PETAGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGE 149
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
AFV+FA+ + ++ A+ K + +G RYIE+F S E+
Sbjct: 150 AFVQFASQDIAEKALKKHKERIGHRYIEIFKSCRAEV 186
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 94/199 (47%), Gaps = 38/199 (19%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE---YYKAIANE 78
L V + TGEAF + AL+++++ +G RY+E+F+S R E +Y+
Sbjct: 137 TLPVDIQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSCRAEVRTHYEPQRKP 196
Query: 79 VSDVR--------GGSPHRSIPRAKSHD------------------------EGKDSAVH 106
+ R GG + + R S+D G
Sbjct: 197 MGMQRPSPYDRPSGGRGYNMMGRGASYDRMRRGGYGGGGGGGGGVSDGRYGDSGSSFQST 256
Query: 107 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
TG + +RGLP+ A + DI +FF L+ +HI + DGR TGEA VEFA ED+ AA
Sbjct: 257 TGHCVHMRGLPYRATETDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAA 314
Query: 166 MAKDRMTLGSRYIELFPSS 184
M+KD+ + RY+ELF +S
Sbjct: 315 MSKDKANMQHRYVELFLNS 333
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDF-VLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S D++ FF +L+ S IH T +GRP+GEAFVE ED K A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEEDLKVAV 66
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD +
Sbjct: 67 KKDRETMGHRYVEVFKSNNVEMDWVM 92
>gi|431917858|gb|ELK17089.1| Epithelial splicing regulatory protein 1 [Pteropus alecto]
Length = 680
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 19/150 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 247 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 293
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 294 ---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 350
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+ A+ K + LG RYIELF S+ + + L
Sbjct: 351 QNALRKHKDLLGKRYIELFRSTAADAESIL 380
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 59/223 (26%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--------- 71
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS +
Sbjct: 326 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAADAESILLVFEH 385
Query: 72 --------------------------YKAIANEVSDVRGGS----------PHRSIPRAK 95
Y+ + N S P + +P
Sbjct: 386 VGGFALFLFISENNPTFFIVKVKLGKYRHVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTN 445
Query: 96 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAF 153
D +RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF
Sbjct: 446 VRD----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAF 495
Query: 154 VEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
++ +A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 IQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 538
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 193 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 252
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE++ ++ E+
Sbjct: 253 HKHHMGTRYIEVYKATGEDF 272
>gi|148237217|ref|NP_001085008.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus laevis]
gi|47507485|gb|AAH70969.1| MGC78776 protein [Xenopus laevis]
Length = 441
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 20/171 (11%)
Query: 19 IVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
+ V F++ + + +GEAF + A++++R M RYVEVF+S E + +
Sbjct: 39 LSGVHFIYTREGRPSGEAFVEFETEDDLQLAVKKDRATMAHRYVEVFKSNSVEMDWVLKH 98
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS 137
+ S D D G +RLRGLPF K++I+ FF + +
Sbjct: 99 TGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 139
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 140 ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 190
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D+I +FF + ++ +H +GRP+GEAFVEF +D + A+
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSESKIANGLSGVHFIYTREGRPSGEAFVEFETEDDLQLAV 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+ RY+E+F S+ EMD L
Sbjct: 71 KKDRATMAHRYVEVFKSNSVEMDWVL 96
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A + DI FF L+ +HI + +DGR TGEA VEFA+ ED+ AAM+K
Sbjct: 278 CVHMRGLPYRATETDIYTFFSP--LNPVRVHIEIGADGRVTGEADVEFASHEDAVAAMSK 335
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 336 DKANMQHRYVELFLNS 351
>gi|344250517|gb|EGW06621.1| Epithelial splicing regulatory protein 1 [Cricetulus griseus]
Length = 677
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 19/153 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 128 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 174
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 175 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 231
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+ A+ K + LG RYIELF S+ E+ + G
Sbjct: 232 QNALRKHKDLLGKRYIELFRSTAAEVQQGRPSG 264
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 74 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 133
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 134 HKHHMGTRYIEVYKATGED 152
>gi|355687360|gb|EHH25944.1| G-rich sequence factor 1, partial [Macaca mulatta]
Length = 362
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 75 IAN-------------------------EVS-DVRGGSPHRS-----IPR------AKSH 97
+ + EV+ D+R + S +P+ ++
Sbjct: 215 VGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEIELPKEVPEKLPEAA 274
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 275 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 328
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 329 FETHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 66 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 116
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 117 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 164
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 165 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|148596982|ref|NP_001091946.1| G-rich sequence factor 1 isoform 2 [Mus musculus]
Length = 362
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 93/207 (44%), Gaps = 43/207 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ + SP + I K E AV
Sbjct: 215 VGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAV 274
Query: 106 HTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G L +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 275 DFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFD 330
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 331 THEDAVAAMLKDRSHVQHRYIELFLNS 357
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 66 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 116
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS + G++RLRGLP+S + DI+DFF + + I M
Sbjct: 117 L----------MKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 164
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 165 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|449486103|ref|XP_004175453.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12 [Taeniopygia
guttata]
Length = 1411
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIAN-EVSDVRGGS-----PHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A + G S P ++ PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQTMGPSGQAHPPSQAHPRSKSPTGQK 418
Query: 102 DSAV-----HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S H + L+GLPF + ++DFFK + EDSI+I +G+ GE FVEF
Sbjct: 419 RSRSRSPHEHGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCHHKQYIGNRFIQVHPITKKAMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PF+A + D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFTATESDVKDFF--LGLRVDAVHMLKDHVGRNNGNGLVKFFSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 804 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVVD 863
Query: 168 -KDRMTLGSRYIELFPSSHEEMDEALS 193
DR +GSR ++L + M+ +++
Sbjct: 864 LNDR-PIGSRKVKLMAACVSRMELSVA 889
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K GE F AL ++Q +G R+++V + K
Sbjct: 453 LDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITK----K 508
Query: 74 AIANEVSDVRGGSPHRSI-PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
A+ ++ +R + S R + +S + + +P++ K +I+ F +
Sbjct: 509 AMLEKIDMIRKRLQNFSYDQREILMNAEGESGLPKLCAHISNIPYNITKIEILQFLEGLA 568
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ E+S+ I ++++G+ G+A V+F +D+ A R L R + L + EEM
Sbjct: 569 VEENSVQILVDNNGQGLGQALVQFKAEDDAHKAERLHRKKLNGRDVNLRLITVEEM 624
>gi|307196545|gb|EFN78075.1| RNA-binding protein 35A [Harpegnathos saltator]
Length = 760
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 22/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ +MG RY+EV+++ +++ V+ G H + R
Sbjct: 244 DMALKRHKHHMGARYIEVYKASGEDFVG-----VAGGTSGEAHAFLSRGAE--------- 289
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ +++FF + ED + DGR TG+AFV FA
Sbjct: 290 --VIVRMRGLPYDCVAKQVLEFFLSGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKE 347
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
ED+ A++K R +GSRYIELF S+ E+ + L+R
Sbjct: 348 EDAVKALSKHRDCIGSRYIELFRSTTAEVQQVLNRA 383
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 16/185 (8%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV K + + TG+AF + AL ++R +G RY+E+FRS E + + +
Sbjct: 326 VLFVKKPDGRATGDAFVLFAKEEDAVKALSKHRDCIGSRYIELFRSTTAEVQQVLNRAID 385
Query: 81 DVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF----KDFVLS 134
+ P I + S +RLRGLP+ A + I++F K+ V
Sbjct: 386 PKQVVQPPPRIVQLPSIIPQHIITCGTRKDCVRLRGLPYEAVVEHILEFMGEHSKNIVF- 444
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG--SRYIELFPSSHEEM 188
+H+ N+ G+P+GEAF++ ++E S A A R M G RYIE+F S ++M
Sbjct: 445 -QGVHMVYNAQGQPSGEAFIQM-DSEASAYACATQRHHRYMIFGKKQRYIEVFQCSGDDM 502
Query: 189 DEALS 193
L+
Sbjct: 503 SLVLT 507
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FF+ +++ + + ++ GR GEA V F N E A+ +
Sbjct: 190 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEHRDMALKR 249
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ +S E+
Sbjct: 250 HKHHMGARYIEVYKASGED 268
>gi|26354144|dbj|BAC40702.1| unnamed protein product [Mus musculus]
Length = 344
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 93/207 (44%), Gaps = 43/207 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 137 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 196
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ + SP + I K E AV
Sbjct: 197 VGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAV 256
Query: 106 HTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G L +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 257 DFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFD 312
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 313 THEDAVAAMLKDRSHVQHRYIELFLNS 339
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 48 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 98
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS + G++RLRGLP+S + DI+DFF + + I M
Sbjct: 99 L----------MKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 146
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 147 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 193
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 15 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 74
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 75 EKHRMYMGQRYVEVYEINNEDVD 97
>gi|449494990|ref|XP_002198687.2| PREDICTED: epithelial splicing regulatory protein 1 [Taeniopygia
guttata]
Length = 766
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV + +++ TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 VLFVTYPDSRPTGDAFVLFACEEYAQNALKKHKDLLGKRYIELFRSTAAEV-QQVLNRYS 417
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
R + +RLRGLP++A +DI++F +F + +
Sbjct: 418 STPLIPLPRPPILPVLPQQFVPPTTIRDCIRLRGLPYAATIEDILEFLGEFSTDIRTHGV 477
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 478 HMVLNHQGRPSGDAFIQMKSADRAFLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 280 DLALQRHKHHMGNRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 323
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+ ++++ FF ++ + D RPTG+AFV FA
Sbjct: 324 NQV---IVRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 381 EYAQNALKKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+
Sbjct: 225 AVIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQ 284
Query: 168 KDRMTLGSRYIELFPSSHEE 187
+ + +G+RYIE++ ++ E+
Sbjct: 285 RHKHHMGNRYIEVYKATGED 304
>gi|345495521|ref|XP_001604031.2| PREDICTED: RNA-binding protein fusilli-like [Nasonia vitripennis]
Length = 817
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 28/158 (17%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS---PHRSIPRAKSHDEGKD 102
D AL+R++ ++ +RY+EV YKA+ + V GG+ H + R
Sbjct: 305 DMALKRHKHHIDQRYIEV--------YKALGEDFVSVAGGTNGEAHAFLSRGAQ------ 350
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFF------KDFVLSEDSIHITMNSDGRPTGEAFVEF 156
I+R+RGLP+ +++FF + ED + +DGR TG+AFV F
Sbjct: 351 -----VIVRMRGLPYDCTAKQVLEFFLTGQKPCQVLDGEDGVLFVKKADGRATGDAFVLF 405
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
A ED+ A++K R +GSRYIELF S+ E+ + L+R
Sbjct: 406 AQEEDAAKALSKHRDCIGSRYIELFRSTTAEVQQVLNR 443
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 20/194 (10%)
Query: 15 QLMDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY 72
Q++D D VLFV K + + TG+AF + AL ++R +G RY+E+FRS E
Sbjct: 379 QVLDGEDGVLFVKKADGRATGDAFVLFAQEEDAAKALSKHRDCIGSRYIELFRSTTAEVQ 438
Query: 73 KAIANEVSDVRGGSP-HRSIPRAKSHDEGKDSAVHTG----ILRLRGLPFSAGKDDIMDF 127
+ + N VSD++ P R+I + + +G +RLRGLP+ A + I++F
Sbjct: 439 QVL-NRVSDIK---PFERTIMQPLPPLPLPQHFITSGTRKDCVRLRGLPYEALVEHILEF 494
Query: 128 FKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG--SRYIE 179
+ + +H+ N+ G+P+GEAF++ N+E + A R M G RYIE
Sbjct: 495 MGEHSKNIEYQGVHMVFNAQGQPSGEAFIQM-NSEAAAYVCASQRHHRYMIYGKKQRYIE 553
Query: 180 LFPSSHEEMDEALS 193
+F S E+M+ L+
Sbjct: 554 VFQCSGEDMNMVLT 567
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P S DE DS ++R RGLP+ + D+ FF+ +++ + + +++ GR GE
Sbjct: 237 PGICSKDEKVDSNC---VVRARGLPWQSSDQDVAKFFRGLNVAKGGVALCLSAQGRRNGE 293
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
A V F + E A+ + + + RYIE++ + E+
Sbjct: 294 ALVRFVSKEHRDMALKRHKHHIDQRYIEVYKALGED 329
>gi|380812104|gb|AFE77927.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
gi|380812106|gb|AFE77928.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
Length = 479
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 272 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 331
Query: 75 IAN-------------------------EVS-DVRGGSPHRS-----IPR------AKSH 97
+ + EV+ D+R + S +P+ ++
Sbjct: 332 VGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEIELPKEVPEKLPEAA 391
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 392 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 445
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 446 FETHEDAVAAMLKDRSHVHHRYIELFLNS 474
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 183 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 233
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 234 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 281
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 282 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>gi|90084329|dbj|BAE91006.1| unnamed protein product [Macaca fascicularis]
Length = 318
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 111 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
Query: 75 IAN-------------------------EVS-DVRGGSPHRS-----IPR------AKSH 97
+ + EV+ D+R + S +P+ ++
Sbjct: 171 VGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEIELPKEVPEKLPEAA 230
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 231 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 284
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 285 FETHEDAVAAMLKDRSHVHHRYIELFLNS 313
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 22 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 72
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 73 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 120
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 121 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 167
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 122 DDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
+D+++FF D + E+ IH +N DG+ G+A +E + +D + A+ K RM +G RY+E
Sbjct: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
Query: 180 LFPSSHEEMD 189
++ ++E++D
Sbjct: 62 VYEINNEDVD 71
>gi|148673402|gb|EDL05349.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Mus musculus]
Length = 429
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 93/207 (44%), Gaps = 43/207 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 222 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 281
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ + SP + I K E AV
Sbjct: 282 VGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAV 341
Query: 106 HTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G L +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 342 DFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFD 397
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 398 THEDAVAAMLKDRSHVQHRYIELFLNS 424
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 133 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 183
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS + G++RLRGLP+S + DI+DFF + + I M
Sbjct: 184 L----------MKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 231
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 232 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 278
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 100 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 159
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 160 EKHRMYMGQRYVEVYEINNEDVD 182
>gi|148673403|gb|EDL05350.1| G-rich RNA sequence binding factor 1, isoform CRA_b [Mus musculus]
Length = 403
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 93/207 (44%), Gaps = 43/207 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 196 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 255
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ + SP + I K E AV
Sbjct: 256 VGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAV 315
Query: 106 HTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G L +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 316 DFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFD 371
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 372 THEDAVAAMLKDRSHVQHRYIELFLNS 398
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 107 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 157
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS + G++RLRGLP+S + DI+DFF + + I M
Sbjct: 158 L----------MKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 205
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 206 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 252
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 74 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 133
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 134 EKHRMYMGQRYVEVYEINNEDVD 156
>gi|313244027|emb|CBY14897.1| unnamed protein product [Oikopleura dioica]
Length = 376
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 7 QVLCTIHHQLMDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 65
Q +C D V+ + ++ + +GEA L + A ++++N+GRRYVEV+
Sbjct: 32 QEICEFLENRPDESSVIICLGRDGRPSGEALVGLYDSDSFELAKSKHKENLGRRYVEVYE 91
Query: 66 SKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG---ILRLRGLPFSAGKD 122
S EY + +D+G D++ +G I+++RG+PFSA
Sbjct: 92 SSTAEYMNC-------------------SYDNDDG-DASGFSGYEFIVKMRGMPFSATDH 131
Query: 123 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182
DI DFF +S I I + +G GEA V+F + E + A+ + + +G RYIE+F
Sbjct: 132 DIRDFFDGCSISPGGIVICLGQNGSANGEALVQFDDKESADQALERHKKNMGQRYIEVFK 191
Query: 183 SSHEEMDEA 191
SS ++ A
Sbjct: 192 SSSRDLQLA 200
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 35/193 (18%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA------- 74
V+ + +N GEA D AL+R+++NMG+RY+EVF+S ++ A
Sbjct: 148 VICLGQNGSANGEALVQFDDKESADQALERHKKNMGQRYIEVFKSSSRDLQLAQGRNGGA 207
Query: 75 ---------IANEVSDVRGGSPHRSIPRAKSH--------------DEGK---DSAVHTG 108
+ N S SP+ P + D G ++ +
Sbjct: 208 GGGGSGGGPMRNSRSGGPRASPYGGPPAGRPAIGGYGGSSAGGPPADPGAGLDENGQYKH 267
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+ +RGLP+ A + +I +FF ++ ++ I N + RP GEA V F D++A+++K
Sbjct: 268 IVHMRGLPYRATEQEISEFF--LPVNTLAVRIIFNRENRPAGEADVAFYTHADAQASLSK 325
Query: 169 DRMTLGSRYIELF 181
DR LGSRY+ELF
Sbjct: 326 DRQNLGSRYVELF 338
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G A +RLRGLP+SA K +I +F ++ E S+ I + DGRP+GEA V ++
Sbjct: 10 GAGGASPAFAVRLRGLPWSATKQEICEFLENRP-DESSVIICLGRDGRPSGEALVGLYDS 68
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEE 187
+ + A +K + LG RY+E++ SS E
Sbjct: 69 DSFELAKSKHKENLGRRYVEVYESSTAE 96
>gi|395541913|ref|XP_003772881.1| PREDICTED: G-rich sequence factor 1 [Sarcophilus harrisii]
Length = 441
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 42/206 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--- 71
++IVD+ FV H+ + TGEA+ P + AL ++++ +G RY+E+F S+R E
Sbjct: 235 LNIVDITFVMDHRGRRKTGEAYVQFEEPEMANQALLKHKEEIGNRYIEIFPSRRNEVRTH 294
Query: 72 ------YKAI-------------------ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 106
KA+ + E+ + + + K E A
Sbjct: 295 VGSHKGKKAVPSMAKYGTEPELNFEEHDGSEELRPITTFESEKEMELPKEAPEKTPEAAD 354
Query: 107 TGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFAN 158
G L +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 355 FGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFET 410
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM+KDR + RYIELF +S
Sbjct: 411 HEDAIAAMSKDRSHVQHRYIELFLNS 436
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A L V AL+++ MG+RYVEV+ I NE D
Sbjct: 146 FLLNRDGKRRGDALVELESEQDVKKALEKHHLYMGQRYVEVYE---------INNEDVDA 196
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS + V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 197 L----------MKSLQAKSNPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 244
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K + +G+RYIE+FPS E+
Sbjct: 245 DHRGRRKTGEAYVQFEEPEMANQALLKHKEEIGNRYIEIFPSRRNEV 291
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + E IH +N DG+ G+A VE + +D K A+
Sbjct: 113 LIRAQGLPWSCTVEDVLKFFSDCRIRNGEHGIHFLLNRDGKRRGDALVELESEQDVKKAL 172
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K + +G RY+E++ ++E++D
Sbjct: 173 EKHHLYMGQRYVEVYEINNEDVD 195
>gi|388452478|ref|NP_001253931.1| G-rich sequence factor 1 [Macaca mulatta]
gi|383417775|gb|AFH32101.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
Length = 479
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 272 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 331
Query: 75 IAN-------------------------EVS-DVRGGSPHRS-----IPR------AKSH 97
+ + EV+ D+R + S +P+ ++
Sbjct: 332 VGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEIELPKEVPEKLPEAA 391
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 392 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 445
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 446 FETHEDAVAAMLKDRSHVHHRYIELFLNS 474
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 183 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 233
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 234 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 281
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 282 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>gi|344244475|gb|EGW00579.1| G-rich sequence factor 1 [Cricetulus griseus]
Length = 621
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 24/168 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 230 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 280
Query: 83 RGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141
S H +S P V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 281 LMKSLHVKSSP-----------MVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 327
Query: 142 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 328 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 375
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 47/195 (24%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 319 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 378
Query: 75 IAN-------------------------EVS-DVRGGSPHRS-----IPRAKSH------ 97
+ + EV+ D+R + S +P+ S
Sbjct: 379 VGSHKAKKMVSSPTAKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPETV 438
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G ++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 439 DFGSMPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 492
Query: 156 FANAEDSKAAMAKDR 170
F ED+ AAM KDR
Sbjct: 493 FDTHEDAVAAMLKDR 507
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
SE+ IH +N DG+ G+A +E + +D + A+ K RM +G RY+E++ ++E++D
Sbjct: 224 SENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVD 279
>gi|440793766|gb|ELR14941.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 622
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 15/177 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA--IANEV 79
+L + + + TGE + AL ++++ MG+RY+EVF + + KA +A V
Sbjct: 44 LLALSPSGRPTGEGYAHFDNEETFVKALAKDKERMGQRYIEVFACPQSDMEKAQMLARGV 103
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS--EDS 137
++ A + +D ++R+RGLPF A + +I+ FF+ + +
Sbjct: 104 TE-----------GASAAATNEDDLQCAAVVRMRGLPFRATEGEIVAFFEQAGVRVLDGG 152
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ I N DGR TGEA+V+F + ED++ A+ + R +GSRYIELF S+ E+ + R
Sbjct: 153 VLICKNPDGRVTGEAYVQFGSDEDARRALERHRDQMGSRYIELFRSNKPELINVMRR 209
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGLPFSA +++I ++F + +HI + GRP+G+AF EF N + AM+K
Sbjct: 263 VVRLRGLPFSATEEEIANWFAP--MPARRVHIILTGSGRPSGDAFAEFDNEAQWEHAMSK 320
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRG 195
+R +GSRY+E+F SS E+ +LS G
Sbjct: 321 NRQHMGSRYVEIFGSSRHELMSSLSHG 347
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 8/95 (8%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED------SIHITMNSDGRPTGEAFVEFANAEDS 162
++RLRGLP+ A +DDI +FF+ + D SI + ++ GRPTGE + F N E
Sbjct: 8 VVRLRGLPWQATEDDIKNFFQGLTFAPDGKDGLPSILLALSPSGRPTGEGYAHFDNEETF 67
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEA--LSRG 195
A+AKD+ +G RYIE+F +M++A L+RG
Sbjct: 68 VKALAKDKERMGQRYIEVFACPQSDMEKAQMLARG 102
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77
+ + + + +G+AF Q + A+ +NRQ+MG RYVE+F S R E ++++
Sbjct: 292 IILTGSGRPSGDAFAEFDNEAQWEHAMSKNRQHMGSRYVEIFGSSRHELMSSLSH 346
>gi|296486434|tpg|DAA28547.1| TPA: G-rich RNA sequence binding factor 1 [Bos taurus]
Length = 406
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 24/168 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 185 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 235
Query: 83 RGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141
S H +S P V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 236 LMKSLHVKSAP-----------MVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 282
Query: 142 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 283 MDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEV 330
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 152 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 212 EKHRMYMGQRYVEVYEINNEDVD 234
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
++IVD+ FV ++ + TGEA+ P AL ++R+ +G RY+E+F S+R E
Sbjct: 274 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNE 329
>gi|338723562|ref|XP_001489151.2| PREDICTED: g-rich sequence factor 1 [Equus caballus]
Length = 362
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 102/209 (48%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 73 ------KAIANEVS------------------DVRGGSPHRS-----IPRAKSH------ 97
K +A+ ++ D+R + S +P+ S
Sbjct: 215 VGSHKGKKMASSLTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEVELPKEMSEKLPETA 274
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 275 DFGTASSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 328
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 329 FDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 66 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 116
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 117 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 164
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 165 DYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTIEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|349603147|gb|AEP99067.1| G-rich sequence factor 1-like protein, partial [Equus caballus]
Length = 361
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 102/209 (48%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P AL ++R+ +G RY+E+F S+R E
Sbjct: 154 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEVRTH 213
Query: 73 ------KAIANEVS------------------DVRGGSPHRS-----IPRAKSH------ 97
K +A+ ++ D+R + S +P+ S
Sbjct: 214 VGSHKGKKMASSLTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEVELPKEMSEKLPETA 273
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 274 DFGTASSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 327
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 328 FDTHEDAVAAMLKDRSHVHHRYIELFLNS 356
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 65 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 115
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 116 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 163
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 164 DYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEV 210
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 32 LIRAQGLPWSCTIEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 91
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 92 EKHRMYMGQRYVEVYEINNEDVD 114
>gi|26346715|dbj|BAC37006.1| unnamed protein product [Mus musculus]
Length = 479
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 93/207 (44%), Gaps = 43/207 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 272 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 331
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ + SP + I K E AV
Sbjct: 332 VGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAV 391
Query: 106 HTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G L +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 392 DFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFD 447
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 448 THEDAVAAMLKDRSHVQHRYIELFLNS 474
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 183 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 233
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS + G++RL GLP+S + DI+DFF + + I M
Sbjct: 234 L----------MKSLQVKPSPVLSDGVVRLTGLPYSCNEKDIVDFFAGLNIVD--ITFVM 281
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 282 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>gi|397500915|ref|XP_003821148.1| PREDICTED: epithelial splicing regulatory protein 1-like [Pan
paniscus]
Length = 422
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 19/171 (11%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K +
Sbjct: 256 LCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------I 307
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + K++ V I+R+RGLPF+A ++++ FF ++ I
Sbjct: 308 AGGTSNEV-----AQFLSKENQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 359
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
DGRPTG+AFV FA E ++ A+ K + LG RYIELF S+ E+ +
Sbjct: 360 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQ 410
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE++ ++ E+
Sbjct: 285 HKHHMGTRYIEVYKATGEDF 304
>gi|170592721|ref|XP_001901113.1| Heterogeneous nuclear ribonucleoprotein H' [Brugia malayi]
gi|158591180|gb|EDP29793.1| Heterogeneous nuclear ribonucleoprotein H', putative [Brugia
malayi]
Length = 385
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 14/174 (8%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + +GE F V DFAL ++++ +G+RYVE+ + E + SD
Sbjct: 38 LTKDRDGRASGEGFVVFSSREDYDFALTKDKKYIGKRYVELQQVSSME----SDYDDSDR 93
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
R G S + A T I+RL GLP+ K++I+ FF+ +++ I +T
Sbjct: 94 RYGG---------SLADPNLPARETSIVRLAGLPYGCTKEEIVRFFEPLEIADRGIVMTY 144
Query: 143 NS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+ G+P GEAFV F + E + A+AK++ + RY++++PSS+ EM AL G
Sbjct: 145 DRYSGKPKGEAFVAFIDDESASKALAKNKEYIQHRYVDIYPSSYGEMLRALDGG 198
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+++ RGLP+S +DD+ +FF + S I +T + DGR +GE FV F++ ED A+ K
Sbjct: 7 VMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKDRDGRASGEGFVVFSSREDYDFALTK 66
Query: 169 DRMTLGSRYIELFPSSHEEMD 189
D+ +G RY+EL S E D
Sbjct: 67 DKKYIGKRYVELQQVSSMESD 87
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+R+RGLP+ A + DI+DFF+ + + +D RP+GEA VEF N D AAM +
Sbjct: 311 CIRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGTD-RPSGEAIVEFRNRADFDAAMQR 369
Query: 169 DRMTLGSRYIELFP 182
+R +GSRY+EL P
Sbjct: 370 NRNYMGSRYVELIP 383
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 20 VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 63
+DVL+ + ++ +GEA D A+QRNR MG RYVE+
Sbjct: 338 IDVLYEYGTDRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVEL 381
>gi|327269521|ref|XP_003219542.1| PREDICTED: epithelial splicing regulatory protein 1-like [Anolis
carolinensis]
Length = 648
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 273 DLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 319
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+ ++++ FF ++ I D RPTG+AFV FA E +
Sbjct: 320 ---IVRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGILFVTYPDHRPTGDAFVLFACEEYA 376
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 377 QNALKKHKDLLGKRYIELFRSTAAEVQQVLNR 408
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 92/178 (51%), Gaps = 5/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + +++ TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 352 ILFVTYPDHRPTGDAFVLFACEEYAQNALKKHKDLLGKRYIELFRSTAAEV-QQVLNRYS 410
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ +RLRGLP++A +DI+ F +F + +
Sbjct: 411 STPLIPLPTPPILPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILGFLGEFSADIRTHGV 470
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ ++E + AA + T+ RY+E+F S EEM+ L G
Sbjct: 471 HMVLNHQGRPSGDAFIQMKSSERAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 528
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + D+ FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 219 IIRARGLPWQSSDQDVARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 278
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 279 HKHHMGNRYIEVYKATGED 297
>gi|34533956|dbj|BAC86863.1| unnamed protein product [Homo sapiens]
Length = 447
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 151 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 201
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S ++DI+DFF + + I M
Sbjct: 202 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEEDIVDFFAGLNIVD--ITFVM 249
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 250 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 296
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 240 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 299
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 300 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 359
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 360 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 413
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 414 FETHEDAVAAMLKDRSHVHHRYIELFLNS 442
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 118 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 177
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 178 EKHRMYMGQRYVEVYEINNEDVD 200
>gi|118151012|ref|NP_001071439.1| G-rich sequence factor 1 [Bos taurus]
gi|117306552|gb|AAI26704.1| G-rich RNA sequence binding factor 1 [Bos taurus]
Length = 481
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 101/209 (48%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P AL ++R+ +G RY+E+F S+R E
Sbjct: 274 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEVRTH 333
Query: 73 ------KAIANEVS------------------DVRGGSPHRS-----IPRAKSH------ 97
K IA+ + D+R + S +P+ S
Sbjct: 334 VGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEIELPKEMSEKIPEAV 393
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 394 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 447
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 448 FDTHEDAVAAMLKDRSHVHHRYIELFLNS 476
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 24/168 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 185 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 235
Query: 83 RGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141
S H +S P V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 236 LMKSLHVKSAP-----------MVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 282
Query: 142 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 283 MDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEV 330
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 152 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 212 EKHRMYMGQRYVEVYEINNEDVD 234
>gi|221040122|dbj|BAH11824.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 98/209 (46%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--- 71
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 72 ---YKA-----------------------IANEVSDVRGGSPHRSIPRAK--------SH 97
YK + ++ + + I K +
Sbjct: 215 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTASESEKEIELPKEVPEKLPEAA 274
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 275 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 328
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 329 FETHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 66 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 116
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 117 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 164
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 165 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|51467948|ref|NP_001003856.1| RNA-binding protein 12 [Danio rerio]
gi|31324618|gb|AAP48571.1| swan [Danio rerio]
gi|190336635|gb|AAI62473.1| RNA binding motif protein 12 [Danio rerio]
gi|190337822|gb|AAI62102.1| RNA binding motif protein 12 [Danio rerio]
Length = 876
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 11/170 (6%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR-- 89
+G A P + AL+RN +G+RY+EV + +++ +++ + S G S H
Sbjct: 341 SGRALVKFYSPHESFEALKRNAGMIGQRYIEVSPATERQWRESVGH--SKAGGDSEHNRH 398
Query: 90 -----SIPRAKSHDEGKDSAVHT--GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
+ P S + + + H + L+GLP+ A I +FFK+ + EDSI+I
Sbjct: 399 RRRSANSPTPSSGERARSRSPHKLDYCVYLKGLPYEAENKQIFEFFKNLDIVEDSIYIAY 458
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+GR TGE FVEF N D KAA+ +GSR+I++ P + + M E +
Sbjct: 459 GPNGRATGEGFVEFRNEMDYKAALGCHMQYMGSRFIQVHPITKKNMYEKI 508
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
++ + L SS EM + R
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMQNMIELSR 87
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ L GLPFS + +I DFF L +SI + ++ GR +G A V+F + +S A+ ++
Sbjct: 304 VHLHGLPFSVLEHEIRDFFHG--LGIESIRLLKDNLGRNSGRALVKFYSPHESFEALKRN 361
Query: 170 RMTLGSRYIELFPSSHEEMDEALSRGR 196
+G RYIE+ P++ + E++ +
Sbjct: 362 AGMIGQRYIEVSPATERQWRESVGHSK 388
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N + TGE F + AL + Q MG R+++V ++ Y+
Sbjct: 447 LDIVEDSIYIAYGPNGRATGEGFVEFRNEMDYKAALGCHMQYMGSRFIQVHPITKKNMYE 506
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
I ++G S KS G SA + +P++ K D+ F L
Sbjct: 507 KIDAIRKRMQG-----SQGDQKSSSGGGKSA--KSCAHITNIPYNVTKKDVRLFLDGIEL 559
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
E+S+ + ++S+G G+A V+F + ED+ A R L R
Sbjct: 560 FEESLKVLVDSNGNGLGQAIVQFKSDEDALKAERLHRQKLNGR 602
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA-MA 167
I++++ +PF+ D+I+DFF + + S+ + + G PTGEA V F + +++ AA M
Sbjct: 801 IVKIQNMPFTVTVDEIIDFFYGYQVLPGSVCLQFSDKGLPTGEAMVAFDSHDEAMAAVMD 860
Query: 168 KDRMTLGSRYIEL 180
+ +G+R +++
Sbjct: 861 LNDRPIGARKVKI 873
>gi|449685013|ref|XP_002164898.2| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Hydra
magnipapillata]
Length = 365
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 23/133 (17%)
Query: 56 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
MG+RY+EV +K+ E + + N + D++ I+RLRGL
Sbjct: 1 MGKRYIEVKEAKQSEM-EWVVNRM----------------------DNSRSEAIVRLRGL 37
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
PF K DI +FF +S I ITMN DGR +G+A+VEF +D++ A+ K + +G
Sbjct: 38 PFDCTKHDIAEFFSGLDISPYGITITMNQDGRASGDAYVEFVTQQDAENALLKHKEKIGH 97
Query: 176 RYIELFPSSHEEM 188
RYIE+F SS +++
Sbjct: 98 RYIEIFQSSKDDI 110
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 51/209 (24%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ ++++ + +G+A+ + AL ++++ +G RY+E+F+S + + + D
Sbjct: 61 TITMNQDGRASGDAYVEFVTQQDAENALLKHKEKIGHRYIEIFQSSKDDIKYVVGTRSDD 120
Query: 82 -------VRGGSPHR----SIPR-----------------AKSHDEGKDSAVH------- 106
+R G R + PR + S D G++ +++
Sbjct: 121 HRPSLMSIRPGPYDRPQNFNGPRRGRGGVQLGPSGFNTAPSYSGDFGRNRSMNRGGRSGG 180
Query: 107 -------------TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 152
TG + +RGLPF A DI+ FF L+ + + +GRP GE
Sbjct: 181 MGMSKTPTVQSSKTGHSVHMRGLPFEASVSDIVTFFS--PLNPVDVRLMFEPNGRPKGEC 238
Query: 153 FVEFANAEDSKAAMAKDRMTLGSRYIELF 181
V+FA D+++AM KD+ +G RYIELF
Sbjct: 239 DVDFATHSDAESAMLKDKQNMGHRYIELF 267
>gi|148596934|ref|NP_848815.2| G-rich sequence factor 1 isoform 1 [Mus musculus]
gi|55976518|sp|Q8C5Q4.2|GRSF1_MOUSE RecName: Full=G-rich sequence factor 1; Short=GRSF-1
gi|26336891|dbj|BAC32129.1| unnamed protein product [Mus musculus]
gi|182888413|gb|AAI60216.1| G-rich RNA sequence binding factor 1 [synthetic construct]
Length = 479
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 93/207 (44%), Gaps = 43/207 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 272 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 331
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ + SP + I K E AV
Sbjct: 332 VGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAV 391
Query: 106 HTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G L +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 392 DFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFD 447
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 448 THEDAVAAMLKDRSHVQHRYIELFLNS 474
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 183 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 233
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS + G++RLRGLP+S + DI+DFF + + I M
Sbjct: 234 L----------MKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 281
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 282 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>gi|26337751|dbj|BAC32561.1| unnamed protein product [Mus musculus]
Length = 479
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 93/207 (44%), Gaps = 43/207 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 272 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 331
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ + SP + I K E AV
Sbjct: 332 VGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAV 391
Query: 106 HTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G L +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 392 DFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFD 447
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 448 THEDAVAAMLKDRSHVQHRYIELFLNS 474
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 183 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 233
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS + G++RLRGLP+S + DI+DFF + + I M
Sbjct: 234 L----------MKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 281
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 282 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>gi|354495968|ref|XP_003510100.1| PREDICTED: G-rich sequence factor 1-like [Cricetulus griseus]
Length = 457
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 24/168 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 161 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 211
Query: 83 RGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141
S H +S P V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 212 LMKSLHVKSSP-----------MVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 258
Query: 142 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 259 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 306
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 99/206 (48%), Gaps = 47/206 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 250 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 309
Query: 75 IAN-------------------------EVS-DVRGGSPHRS-----IPRAKSH------ 97
+ + EV+ D+R + S +P+ S
Sbjct: 310 VGSHKAKKMVSSPTAKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPETV 369
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G ++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 370 DFGSMPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 423
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELF 181
F ED+ AAM KDR + RYIELF
Sbjct: 424 FDTHEDAVAAMLKDRSHVQHRYIELF 449
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 128 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 187
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 188 EKHRMYMGQRYVEVYEINNEDVD 210
>gi|307181801|gb|EFN69244.1| RNA-binding protein 35A [Camponotus floridanus]
Length = 762
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 22/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ +MG RY+EV+++ +++ IA S G H + R
Sbjct: 242 DMALKRHKHHMGPRYIEVYKASGEDFV-GIAGGTS----GEAHAFLSRGAQ--------- 287
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ +++FF+ + E+ + DGR TG+AFV FA
Sbjct: 288 --VIVRMRGLPYDCIAKQVLEFFQSGQKPCQVLDGEEGVLFVKKPDGRATGDAFVLFAKE 345
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
ED+ A++K R +GSRYIELF S+ E+ + L+R
Sbjct: 346 EDAVKALSKHRDLIGSRYIELFRSTTAEVQQVLNRA 381
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 16/185 (8%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANE 78
VLFV K + + TG+AF + AL ++R +G RY+E+FRS E + + A +
Sbjct: 324 VLFVKKPDGRATGDAFVLFAKEEDAVKALSKHRDLIGSRYIELFRSTTAEVQQVLNRATD 383
Query: 79 VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF----KDFVLS 134
V P + S +RLRGLP+ A + I++F K+ V
Sbjct: 384 PKQVILPPPPITQLPPLLPQHIITSGTRKDCVRLRGLPYEALVEHILEFMGEHSKNIVY- 442
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG--SRYIELFPSSHEEM 188
+H+ N+ G+P+GEAF++ ++E S A A R MT G RYIE+F S ++M
Sbjct: 443 -QGVHMVYNAQGQPSGEAFIQM-DSEASAYACASQRHHRYMTYGKKQRYIEVFQCSGDDM 500
Query: 189 DEALS 193
+ L+
Sbjct: 501 NLVLT 505
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P S DE D+ ++R RGLP+ + DI FF+ +++ + + ++ GR GE
Sbjct: 174 PGICSKDEEVDNDC---VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGE 230
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
A V F N E A+ + + +G RYIE++ +S E+
Sbjct: 231 ALVRFINKEHRDMALKRHKHHMGPRYIEVYKASGED 266
>gi|426344574|ref|XP_004038836.1| PREDICTED: G-rich sequence factor 1 [Gorilla gorilla gorilla]
Length = 362
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 215 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 274
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 275 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 328
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 329 FETHEDAVAAMLKDRSHIHHRYIELFLNS 357
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 66 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 116
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 117 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 164
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 165 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|45709575|gb|AAH67720.1| Zgc:85960 protein [Danio rerio]
Length = 302
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 34/208 (16%)
Query: 9 LCTIHHQLMDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
LC+ L + + L V + TGEAF + AL+++++ +G RY+E+F+S
Sbjct: 18 LCSFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKS 77
Query: 67 KRQE---YYKAIANEVSDVR---------GGSPHRSIPRAKSHD---------------- 98
R E +Y+ + R GG + + R S D
Sbjct: 78 SRAEVRTHYEPPRKGMGMQRPGPYDRPSGGGRGYNGMSRGGSFDRMRRGGYGGGVSDGRY 137
Query: 99 -EGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
+G + TG + +RGLP+ A + DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 138 GDGGNFQSTTGHCVHMRGLPYRATEPDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 195
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 196 ATHEDAVAAMSKDKANMQHRYVELFLNS 223
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 124 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
+ FF + + I + ++ GR TGEAFV+FA+ + ++ A+ K + +G RYIE+F S
Sbjct: 18 LCSFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKS 77
Query: 184 SHEEM 188
S E+
Sbjct: 78 SRAEV 82
>gi|363730887|ref|XP_418338.3| PREDICTED: epithelial splicing regulatory protein 1 [Gallus gallus]
Length = 636
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 280 DLALQRHKHHMGNRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 323
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+ ++++ FF ++ + D RPTG+AFV FA
Sbjct: 324 NQV---IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 381 EYAQNALKKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 5/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV + +++ TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 VLFVTYPDSRPTGDAFVLFACEEYAQNALKKHKDLLGKRYIELFRSTAAEV-QQVLNRYS 417
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ +RLRGLP++A +DI++F +F + +
Sbjct: 418 STPLIPLPTPPILPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILEFLGEFSTDIRTHGV 477
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 478 HMVLNHQGRPSGDAFIQMKSADRAFLAAQRCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F N E A+
Sbjct: 225 AVIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQ 284
Query: 168 KDRMTLGSRYIELFPSSHEE 187
+ + +G+RYIE++ ++ E+
Sbjct: 285 RHKHHMGNRYIEVYKATGED 304
>gi|296196376|ref|XP_002745793.1| PREDICTED: G-rich sequence factor 1 [Callithrix jacchus]
Length = 479
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 272 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 331
Query: 75 IANEVSDVRGGSPH-----------------------------------RSIPR--AKSH 97
+ + SP + +P ++
Sbjct: 332 VGSHKGKKMASSPTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEIELPKEVPEKLPEAA 391
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G +H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 392 DFGTTPCLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 445
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 446 FETHEDAVAAMLKDRSHVHHRYIELFLNS 474
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 183 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 233
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 234 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 281
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 282 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTIEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>gi|334312966|ref|XP_003339804.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 2-like [Monodelphis domestica]
Length = 1253
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TGEA Q D +L+R++ +MG RY+EV+++ +E+ K + GG+ H
Sbjct: 820 TGEALVRFVDSEQRDLSLERHKHHMGARYIEVYKASGEEFLK--------IAGGTSHEVA 871
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRP 148
D+ I+R+RGLPF+A D++ F + + DGRP
Sbjct: 872 QFLSREDQV--------IIRMRGLPFTATPGDVLAFLGPECPVTGGPEGLLFVHYPDGRP 923
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
TG+AF FA E ++ A+ K + LG RYIEL + + + L+R
Sbjct: 924 TGDAFALFACEELAQGALRKHKGILGKRYIELSGAPPSGVSQVLNR 969
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFVH + + TG+AF + AL++++ +G+RY+E+ + + + +S
Sbjct: 913 LLFVHYPDGRPTGDAFALFACEELAQGALRKHKGILGKRYIELSGAPPSGVSQVLNRYMS 972
Query: 81 D-VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDS 137
+ P IP + + V + RLRGLP++A DDI+ F + +
Sbjct: 973 SPLIPTLPAPLIPVLPAPFPLAGAGVRDCV-RLRGLPYTASIDDILGFLGEAAGDIRPHG 1031
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
+H+ +N GRP+G+AF++ +A+ + A + + + RY+E+FP S EEM L G
Sbjct: 1032 VHMVLNQQGRPSGDAFIQMKSADRALVAAQRCHKKMMKERYVEVFPCSGEEMSLVLMGG 1090
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH-ITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++R RGLP+ + DI FFK +++ N+ GR TGEA V F ++E ++
Sbjct: 779 VVRARGLPWQSSDQDIARFFKGLNIAKGGRGPCAXNAQGRRTGEALVRFVDSEQRDLSLE 838
Query: 168 KDRMTLGSRYIELFPSSHEE 187
+ + +G+RYIE++ +S EE
Sbjct: 839 RHKHHMGARYIEVYKASGEE 858
>gi|195381217|ref|XP_002049351.1| GJ21539 [Drosophila virilis]
gi|194144148|gb|EDW60544.1| GJ21539 [Drosophila virilis]
Length = 982
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 22/155 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 334 DMALKRHKHHIGSRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 377
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD-----FVL-SEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ ++DFF VL + + DGR TG+AFV FAN
Sbjct: 378 AQVIIRMRGLPYDCTPKQVLDFFTTGEAPCHVLDGNEGVLFVKKPDGRATGDAFVLFANE 437
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DS A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 438 SDSSKALGRHRESIGQRYIELFRSTTAEVQQVLNR 472
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 50/223 (22%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK------- 73
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E +
Sbjct: 416 VLFVKKPDGRATGDAFVLFANESDSSKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD 475
Query: 74 -------------------------------AIANEVSDVRGGSPHRSIPRAKSHDEGK- 101
A + ++ + + H ++ +H
Sbjct: 476 PKTYESNNHGQPPLIAQLPTMQLPLLPQVGAAAGHALNPLTANASHANLCPQLTHAPQHL 535
Query: 102 -DSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFAN 158
S +RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++ +
Sbjct: 536 ITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-D 594
Query: 159 AEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
+EDS A+ + M G RYIE+F S ++M+ L+ G
Sbjct: 595 SEDSARLCAQRKHNQFMVFGKKFRYIEVFQCSGDDMNHVLNGG 637
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F + E A+ +
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 339
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ +S E+
Sbjct: 340 HKHHIGSRYIEVYRASGED 358
>gi|90018164|gb|ABD83895.1| hypothetical protein [Ictalurus punctatus]
Length = 157
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S D++ FF D ++ + SIH+T +GRP+GEAFVE + ++ K A+
Sbjct: 8 VVRVRGLPWSCSVDEVARFFSDCKVANNGTSIHLTYTREGRPSGEAFVELESEDELKIAL 67
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 68 KKDRETMGHRYVEVFKSNNVEMDWVL 93
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 19/118 (16%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF L ++ AL+++R+ MG RYVEVF+S E + + +
Sbjct: 50 SGEAFVELESEDELKIALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN---------- 99
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 149
EG G++RLRGLPF K++I+ FF + + I + ++ R T
Sbjct: 100 ---GPETEGD------GLVRLRGLPFGCSKEEIVRFFSGLEIVPNGITLPVDYMWRST 148
>gi|281363439|ref|NP_001163161.1| fusilli, isoform G [Drosophila melanogaster]
gi|272432494|gb|ACZ94433.1| fusilli, isoform G [Drosophila melanogaster]
Length = 860
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 23/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 334 DMALKRHKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 377
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD-------FVLSEDSIHITMNSDGRPTGEAFVEFAN 158
I+R+RGLP+ A ++DFF + + + DGR TG+AFV FAN
Sbjct: 378 AQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAN 437
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 438 ETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 27/197 (13%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + + N
Sbjct: 417 VLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVL-NRSM 475
Query: 81 DVR----GGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
D + GG P +P H S +RLRGLP+ A + I+
Sbjct: 476 DPKNYESGGGHSQPPLIAQLPTMQLPLLPQHL--ITSGTTKNCIRLRGLPYEAMVEHILH 533
Query: 127 FFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS--RYI 178
F DF + +H+ +N+ G+P+GEAF++ + E+S A+ R M G RYI
Sbjct: 534 FLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCAQRRHNHYMMFGKKYRYI 592
Query: 179 ELFPSSHEEMDEALSRG 195
E+F S ++M+ L+ G
Sbjct: 593 EVFQCSGDDMNMVLNGG 609
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 58 RRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 117
R V V ++ Q +K ANE+ ++ P S D+ D I+R RGLP+
Sbjct: 238 RDMVTVIQTLLQAGHKFAANELVNLV------LEPGICSIDDEVDGNC---IVRARGLPW 288
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
+ DI FF+ +++ + + ++ GR GEA + F E A+ + + +G+RY
Sbjct: 289 QSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRY 348
Query: 178 IELFPSSHEE 187
IE++ +S E+
Sbjct: 349 IEVYRASGED 358
>gi|334311305|ref|XP_001381494.2| PREDICTED: RNA-binding protein 12 [Monodelphis domestica]
Length = 1413
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++ R+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQTHPPPQTLVRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEPGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+ D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RSESDYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA + D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMETDVKDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFFSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 9/178 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V ++ +
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRSESDYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 74 AIANEVSDVRGGS-PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
I ++ S R I D H + +PF+ K DI+ F ++
Sbjct: 513 KIDMIRKRLQNFSYDQREIILNTEGDSSPKLCAH-----ISNIPFNITKMDILQFLEEIP 567
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++HI +++ G+ G+A V+F +D+ A R L R L + E+M E
Sbjct: 568 VDENAVHILVDNTGQGLGQALVQFKTEDDAHKAERLHRKKLNGREALLHVITLEDMRE 625
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 804 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVVD 863
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 864 LNDR-PIGSRKVKLM 877
>gi|221041252|dbj|BAH12303.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 241 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 300
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 301 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 360
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 361 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 414
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 415 FETHEDAVAAMLKDRSHVHHRYIELFLNS 443
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 152 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 202
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 203 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 250
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 251 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 297
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 119 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 178
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 179 EKHRMYMGQRYVEVYEINNEDVD 201
>gi|441626116|ref|XP_003265953.2| PREDICTED: G-rich sequence factor 1 [Nomascus leucogenys]
Length = 539
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 243 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 293
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS + V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 294 L----------MKSLEVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 341
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 342 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 388
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 47/206 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 332 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 391
Query: 75 IAN-------------------------EVS-DVRGGSPHRS-----IPR------AKSH 97
+ + EV+ D++ + S +P+ ++
Sbjct: 392 VGSYKGKKITSFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 451
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 452 DFGTTSSLH--FVHVRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 505
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELF 181
F ED+ AAM KDR + RYIELF
Sbjct: 506 FETHEDAVAAMLKDRSHVHHRYIELF 531
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
LRL + F +D + ++ E+ IH +N DG+ G+A +E + +D + A+ K
Sbjct: 216 LRLLDVQFKPKQDGLDCRIRN---GENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKH 272
Query: 170 RMTLGSRYIELFPSSHEEMD 189
RM +G RY+E++ ++E++D
Sbjct: 273 RMYMGQRYVEVYEINNEDVD 292
>gi|395505306|ref|XP_003756983.1| PREDICTED: RNA-binding protein 12 [Sarcophilus harrisii]
Length = 1415
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++ R+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQTHPPPQTLVRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEPGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+ D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RSESDYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA + D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMETDVKDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFFSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 9/178 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V ++ +
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRSESDYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 74 AIANEVSDVRGGS-PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
I ++ S R I D H + +PF+ K DI+ F ++
Sbjct: 513 KIDMIRKRLQNFSYDQREIILNTEGDSSPKLCAH-----ISNIPFNITKMDILQFLEEIP 567
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++HI +++ G+ G+A V+F +D+ A R L R L + E+M E
Sbjct: 568 VDENAVHILVDNTGQGLGQALVQFKTEDDAHKAERLHRKKLNGREALLHVITLEDMRE 625
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 804 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVVD 863
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR ++L
Sbjct: 864 LNDR-PIGSRKVKLM 877
>gi|24653901|ref|NP_725479.1| fusilli, isoform C [Drosophila melanogaster]
gi|21645394|gb|AAM70980.1| fusilli, isoform C [Drosophila melanogaster]
Length = 891
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 23/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 334 DMALKRHKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 377
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFAN 158
I+R+RGLP+ A ++DFF VL + + DGR TG+AFV FAN
Sbjct: 378 AQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAN 437
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 438 ETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 52/225 (23%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANE 78
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + + + +
Sbjct: 417 VLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD 476
Query: 79 VSDVRGGSPHRSIP------------------RAKSHDEGKDSA---------------- 104
+ G H P + SH G A
Sbjct: 477 PKNYESGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQ 536
Query: 105 --VHTG----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 156
+ +G +RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++
Sbjct: 537 HLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM 596
Query: 157 ANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
+ E+S A+ R M G RYIE+F S ++M+ L+ G
Sbjct: 597 -DLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 640
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 58 RRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 117
R V V ++ Q +K ANE+ ++ P S D+ D I+R RGLP+
Sbjct: 238 RDMVTVIQTLLQAGHKFAANELVNLV------LEPGICSIDDEVDGNC---IVRARGLPW 288
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
+ DI FF+ +++ + + ++ GR GEA + F E A+ + + +G+RY
Sbjct: 289 QSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRY 348
Query: 178 IELFPSSHEE 187
IE++ +S E+
Sbjct: 349 IEVYRASGED 358
>gi|351713464|gb|EHB16383.1| Epithelial splicing regulatory protein 1 [Heterocephalus glaber]
Length = 677
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 25/149 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 274 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 317
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 318 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 374
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
E ++ A+ K + LG RYIELF S+ E+
Sbjct: 375 EYAQNALRKHKDLLGKRYIELFRSTAAEV 403
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 25/189 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-IANEV 79
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + N
Sbjct: 353 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQVVQVLNRF 412
Query: 80 SDVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
S P + +P D +RLRGLP++A +DI+DF
Sbjct: 413 SSAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLG 462
Query: 130 DFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 186
+F + +H+ +N GRP+G+AF++ +A+ + A K + T+ RY+E+F S E
Sbjct: 463 EFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMASQKCHKKTMKDRYVEVFQCSAE 522
Query: 187 EMDEALSRG 195
EM+ L G
Sbjct: 523 EMNFVLMGG 531
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 220 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 279
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE++ ++ E+
Sbjct: 280 HKHHMGTRYIEVYKATGEDF 299
>gi|355749346|gb|EHH53745.1| hypothetical protein EGM_14439, partial [Macaca fascicularis]
Length = 362
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 66 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 116
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 117 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 164
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 165 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 75 IAN-------------------------EVS-DVRGGSPHRS-----IPR------AKSH 97
+ + EV+ D+R + S +P+ ++
Sbjct: 215 VGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMTAFESEKEIELPKEVPEKLPEAA 274
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S+ H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 275 DFGTTSSQH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 328
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 329 FETHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|397475207|ref|XP_003809035.1| PREDICTED: G-rich sequence factor 1 [Pan paniscus]
Length = 362
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 155 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 214
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 215 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 274
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 275 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 328
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 329 FETHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 66 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 116
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 117 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 164
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 165 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|517196|gb|AAC95399.1| G-rich sequence factor-1 [Homo sapiens]
Length = 424
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 103/209 (49%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 217 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 276
Query: 73 ------KAIAN-----------------EVSDV----------RGGSPHRSIPR--AKSH 97
K IA+ EV++V + + +P ++
Sbjct: 277 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEVFQPMTAFESEKEIELPKEVPEKLPEAA 336
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 337 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 390
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 391 FETHEDAVAAMLKDRSHVHHRYIELFLNS 419
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 128 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 178
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 179 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 226
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 227 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 273
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 95 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 154
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 155 EKHRMYMGQRYVEVYEINNEDVD 177
>gi|328716236|ref|XP_001946855.2| PREDICTED: RNA-binding protein fusilli-like [Acyrthosiphon pisum]
Length = 858
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 22/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D A++R++ ++G RY+EV YKA + +V GG+ S + +
Sbjct: 321 DMAMKRHKHHIGSRYIEV--------YKANGEDFINVAGGN--------SSEAQTFLTKG 364
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ D++ FF++ + ED + DGR TG+AFV FA+
Sbjct: 365 AQVIVRMRGLPYDCTAKDVITFFENGEQTCSVMDGEDGVLFVKKPDGRATGDAFVLFADE 424
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+D+ A++K R +G+RYIELF S+ E+ + L+R
Sbjct: 425 DDAPKALSKHRDLIGTRYIELFRSTTAEVQQVLNRA 460
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 36/208 (17%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK------- 73
VLFV K + + TG+AF + AL ++R +G RY+E+FRS E +
Sbjct: 403 VLFVKKPDGRATGDAFVLFADEDDAPKALSKHRDLIGTRYIELFRSTTAEVQQVLNRAMD 462
Query: 74 -AIANEVSDVRG-------------GSPHR---SIPRAKSHDEGKDSAVHTGILRLRGLP 116
++ + SD G SP +P S +RLRGLP
Sbjct: 463 PSVRSTASDSNGNITTPVTTTAGVNNSPTALLGHVPLLPLPQHVITSGTRKDCIRLRGLP 522
Query: 117 FSAGKDDIMDFF----KDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAK--D 169
+ A + I++F K+ V +H+ NS G +GEAF++ N ++AAMAK +
Sbjct: 523 YEANVEHILEFLGEHSKNIVF--QGVHMVYNSVGHASGEAFIQMNNEGSAAQAAMAKHHN 580
Query: 170 RMTLG--SRYIELFPSSHEEMDEALSRG 195
M+ G RYIE+F S E+M L+ G
Sbjct: 581 YMSFGKKQRYIEVFQCSGEDMHLVLTGG 608
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FF+ +++ + + +++ GR GEA V F N E AM +
Sbjct: 267 VVRARGLPWQSSDQDIAKFFRGLNIAKGGVALCLSAHGRRNGEAVVRFVNQEHRDMAMKR 326
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ E+
Sbjct: 327 HKHHIGSRYIEVYKANGED 345
>gi|324510500|gb|ADY44391.1| RNA-binding protein sym-2, partial [Ascaris suum]
Length = 603
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 30/181 (16%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L + + GEA Q + AL+R+R + RY+EV+R+ +++ + A S+
Sbjct: 203 LCLSAEGRRNGEALVRFEESEQRELALKRHRHFLHNRYIEVYRATGEDFLQVAAGSSSEA 262
Query: 83 -----RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD----FVL 133
RGG+ I+R+RGLP+ + I +FF +
Sbjct: 263 VRFVSRGGA---------------------MIVRMRGLPYDCTEAQIREFFASGDNGCTV 301
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
E I SDGRPTG+AFV F + + A+ K + T+GSRYIELF S+ E+ + ++
Sbjct: 302 MEGGILFVNKSDGRPTGDAFVMFDDEAAGQLALTKHKHTIGSRYIELFRSTQAEVQQVVN 361
Query: 194 R 194
R
Sbjct: 362 R 362
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 26/181 (14%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV+K++ + TG+AF + AL +++ +G RY+E+FRS + E + +
Sbjct: 306 ILFVNKSDGRPTGDAFVMFDDEAAGQLALTKHKHTIGSRYIELFRSTQAEVQQVV----- 360
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+RS+ + +G +RLRGLP+ A ++I++F D + +
Sbjct: 361 -------NRSLESVQVVVQGN----RKDCIRLRGLPYEAHVENIVEFLGDAARHIVFQGV 409
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMA----KDRMTLG--SRYIELFPSSHEEMDEAL 192
H+ N+ G P+GEAF++ ++E S A A M +G RYIE+F S E+M+ +
Sbjct: 410 HMVYNAQGHPSGEAFIQM-DSEISAATAAAIAHNKYMQIGKKQRYIEVFQCSPEDMNLVI 468
Query: 193 S 193
+
Sbjct: 469 T 469
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
DSAV ++R RGLP+ A D+ FF ++ + + ++++GR GEA V F +E
Sbjct: 168 DSAV---VVRARGLPWQATDHDVAQFFVGLNIAPGGVALCLSAEGRRNGEALVRFEESEQ 224
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEE 187
+ A+ + R L +RYIE++ ++ E+
Sbjct: 225 RELALKRHRHFLHNRYIEVYRATGED 250
>gi|221042436|dbj|BAH12895.1| unnamed protein product [Homo sapiens]
Length = 393
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 186 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 245
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 246 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 305
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 306 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 359
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 360 FETHEDAVAAMLKDRSHVHHRYIELFLNS 388
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 97 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 147
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 148 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 195
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 196 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 242
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 64 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 123
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 124 EKHRMYMGQRYVEVYEINNEDVD 146
>gi|307176277|gb|EFN65908.1| Heterogeneous nuclear ribonucleoprotein H2 [Camponotus floridanus]
Length = 417
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 31/174 (17%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEA+ + P ++ A +R+R +MG RY+EVF++KR E + ++
Sbjct: 56 SGEAYVEMDTPEDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVVKRSGLNL--------- 106
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
++A+ G +RLRGLPF K++I FF + + I + + GR TGE
Sbjct: 107 ----------ENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGE 156
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSR------------YIELFPSSHEEMDEALS 193
A+V+F N + ++ A+ K + +G R YIE+F SS E+ ++
Sbjct: 157 AYVQFVNKDVAERALQKHKEKIGHRWGTETLYIAGFGYIEIFRSSLSEVRASIG 210
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D+IM FF D +S ++ +H+TM+ +GRP+GEA+VE ED + A
Sbjct: 14 VVKMRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKAC 73
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
+DR +G RYIE+F + EM+ + R
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKR 101
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 93 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 152
R + G +S VH+ + +RGLPF A + DI DFF+ + ++ I + + GRP+GEA
Sbjct: 284 RGNNDSWGGNSGVHS--IHMRGLPFKATEQDIADFFRP--IEPVNVRIILENGGRPSGEA 339
Query: 153 FVEFANAEDSKAAMAKDRMTLGSRYIELF 181
VEFA E++ AM KD+ + RYIELF
Sbjct: 340 DVEFATHEEAVKAMCKDKSHMSHRYIELF 368
>gi|17865825|ref|NP_524691.1| fusilli, isoform D [Drosophila melanogaster]
gi|24653906|ref|NP_725481.1| fusilli, isoform E [Drosophila melanogaster]
gi|24653908|ref|NP_725482.1| fusilli, isoform F [Drosophila melanogaster]
gi|75021514|sp|Q9BJZ5.1|FUSIL_DROME RecName: Full=RNA-binding protein fusilli
gi|13183640|gb|AAK15280.1|AF321979_1 fusilli [Drosophila melanogaster]
gi|21645395|gb|AAM70981.1| fusilli, isoform D [Drosophila melanogaster]
gi|21645396|gb|AAM70982.1| fusilli, isoform E [Drosophila melanogaster]
gi|21645397|gb|AAM70983.1| fusilli, isoform F [Drosophila melanogaster]
Length = 967
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 23/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 334 DMALKRHKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 377
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD-------FVLSEDSIHITMNSDGRPTGEAFVEFAN 158
I+R+RGLP+ A ++DFF + + + DGR TG+AFV FAN
Sbjct: 378 AQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAN 437
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 438 ETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 52/225 (23%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV- 79
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + + +
Sbjct: 417 VLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD 476
Query: 80 -SDVRGGSPHRSIP------------------RAKSHDEGKDSA---------------- 104
+ G H P + SH G A
Sbjct: 477 PKNYESGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQ 536
Query: 105 --VHTG----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 156
+ +G +RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++
Sbjct: 537 HLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM 596
Query: 157 ANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
+ E+S A+ R M G RYIE+F S ++M+ L+ G
Sbjct: 597 -DLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 640
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F E A+ +
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ +S E+
Sbjct: 340 HKHHIGTRYIEVYRASGED 358
>gi|21748975|dbj|BAC03513.1| unnamed protein product [Homo sapiens]
Length = 415
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 208 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 267
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 268 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 327
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 328 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 381
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 382 FETHEDAVAAMLKDRSHVHHRYIELFLNS 410
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 119 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 169
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 170 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 217
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 218 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 264
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 86 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 145
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 146 EKHRMYMGQRYVEVYEINNEDVD 168
>gi|410227596|gb|JAA11017.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410268188|gb|JAA22060.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410306352|gb|JAA31776.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410306354|gb|JAA31777.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410360388|gb|JAA44703.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410360390|gb|JAA44704.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
Length = 481
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 185 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 235
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 236 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 283
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 284 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 330
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 274 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 333
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 334 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 393
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 394 DFGTASSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 447
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 448 FETHEDAVAAMLKDRSHVHHRYIELFLNS 476
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 152 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 212 EKHRMYMGQRYVEVYEINNEDVD 234
>gi|108743797|gb|ABG02207.1| IP16182p [Drosophila melanogaster]
Length = 694
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 23/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 334 DMALKRHKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 377
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD-------FVLSEDSIHITMNSDGRPTGEAFVEFAN 158
I+R+RGLP+ A ++DFF + + + DGR TG+AFV FAN
Sbjct: 378 AQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAN 437
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 438 ETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 52/225 (23%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANE 78
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + + + +
Sbjct: 417 VLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD 476
Query: 79 VSDVRGGSPHRSIP------------------RAKSHDEGKDSA---------------- 104
+ G H P + SH G A
Sbjct: 477 PKNYESGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQ 536
Query: 105 --VHTG----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 156
+ +G +RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++
Sbjct: 537 HLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM 596
Query: 157 ANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
+ E+S A+ R M G RYIE+F S ++M+ L+ G
Sbjct: 597 -DLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 640
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 58 RRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 117
R V V ++ Q +K ANE+ ++ P S D+ D I+R RGLP+
Sbjct: 238 RDMVTVIQTLLQAGHKFAANELVNLV------LEPGICSIDDEVDGNC---IVRARGLPW 288
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
+ DI FF+ +++ + + ++ GR GEA + F E A+ + + +G+RY
Sbjct: 289 QSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRY 348
Query: 178 IELFPSSHEE 187
IE++ +S E+
Sbjct: 349 IEVYRASGED 358
>gi|63991866|gb|AAY40942.1| unknown [Homo sapiens]
gi|119626039|gb|EAX05634.1| G-rich RNA sequence binding factor 1, isoform CRA_b [Homo sapiens]
Length = 435
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 184 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 234
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 235 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 282
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 283 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 329
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 211 EKHRMYMGQRYVEVYEINNEDVD 233
>gi|195334671|ref|XP_002034000.1| GM20128 [Drosophila sechellia]
gi|194125970|gb|EDW48013.1| GM20128 [Drosophila sechellia]
Length = 885
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 23/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 327 DMALKRHKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 370
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD-------FVLSEDSIHITMNSDGRPTGEAFVEFAN 158
I+R+RGLP+ A ++DFF + + + DGR TG+AFV FAN
Sbjct: 371 AQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAN 430
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 431 ETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 466
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 52/225 (23%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANE 78
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + + + +
Sbjct: 410 VLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD 469
Query: 79 VSDVRGGSPHRSIP------------------RAKSHDEGKDSA---------------- 104
+ G H P + SH G A
Sbjct: 470 PKNYESGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQ 529
Query: 105 --VHTG----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 156
+ +G +RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++
Sbjct: 530 HLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM 589
Query: 157 ANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
+ E+S A+ R M G RYIE+F S ++M+ L+ G
Sbjct: 590 -DLEESARLCAQRRHHHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 633
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F E A+ +
Sbjct: 273 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 332
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ +S E+
Sbjct: 333 HKHHIGTRYIEVYRASGED 351
>gi|193784859|dbj|BAG54012.1| unnamed protein product [Homo sapiens]
Length = 459
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 252 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 311
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 312 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 371
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 372 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 425
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 426 FETHEDAVAAMLKDRSHVHHRYIELFLNS 454
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 163 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 213
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 214 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 261
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 262 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 308
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 130 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 189
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 190 EKHRMYMGQRYVEVYEINNEDVD 212
>gi|240849679|gb|ACS54296.1| RE48185p [Drosophila melanogaster]
Length = 860
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 23/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 334 DMALKRHKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 377
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD-------FVLSEDSIHITMNSDGRPTGEAFVEFAN 158
I+R+RGLP+ A ++DFF + + + DGR TG+AFV FAN
Sbjct: 378 AQVIIRMRGLPYDATAKQVLDFFTTGDAPPCHVLDGNEGVLFVEKPDGRATGDAFVLFAN 437
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 438 ETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 27/197 (13%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + + N
Sbjct: 417 VLFVEKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVL-NRSM 475
Query: 81 DVR----GGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
D + GG P +P H S +RLRGLP+ A + I+
Sbjct: 476 DPKNYESGGGHSQPPLIAQLPTMQLPLLPQHL--ITSGTTKNCIRLRGLPYEAMVEHILH 533
Query: 127 FFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS--RYI 178
F DF + +H+ +N+ G+P+GEAF++ + E+S A+ R M G RYI
Sbjct: 534 FLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCAQRRHNHYMMFGKKYRYI 592
Query: 179 ELFPSSHEEMDEALSRG 195
E+F S ++M+ L+ G
Sbjct: 593 EVFQCSGDDMNMVLNGG 609
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 58 RRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 117
R V V ++ Q +K ANE+ ++ P S D+ D I+R RGL +
Sbjct: 238 RDMVTVIQTLLQAGHKFAANELVNLV------LEPGICSIDDEVDGNC---IVRARGLLW 288
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
+ DI FF+ +++ + + ++ GR GEA + F E A+ + + +G+RY
Sbjct: 289 QSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRY 348
Query: 178 IELFPSSHEE 187
IE++ +S E+
Sbjct: 349 IEVYRASGED 358
>gi|193786243|dbj|BAG51526.1| unnamed protein product [Homo sapiens]
Length = 412
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 205 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 264
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 265 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 324
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 325 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 378
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 379 FETHEDAVAAMLKDRSHVHHRYIELFLNS 407
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 116 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 166
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 167 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 214
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 215 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 261
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 83 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 142
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 143 EKHRMYMGQRYVEVYEINNEDVD 165
>gi|149193321|ref|NP_002083.3| G-rich sequence factor 1 isoform 1 [Homo sapiens]
Length = 480
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 273 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 332
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 333 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 392
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 393 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 446
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 447 FETHEDAVAAMLKDRSHVHHRYIELFLNS 475
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 184 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 234
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 235 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 282
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 283 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 329
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 211 EKHRMYMGQRYVEVYEINNEDVD 233
>gi|215274142|sp|Q12849.3|GRSF1_HUMAN RecName: Full=G-rich sequence factor 1; Short=GRSF-1
Length = 480
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 273 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 332
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 333 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 392
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 393 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 446
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 447 FETHEDAVAAMLKDRSHVHHRYIELFLNS 475
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 184 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 234
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 235 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 282
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 283 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 329
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 211 EKHRMYMGQRYVEVYEINNEDVD 233
>gi|270009942|gb|EFA06390.1| hypothetical protein TcasGA2_TC009268 [Tribolium castaneum]
Length = 751
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 22/155 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ + S+ + + +AV
Sbjct: 281 DMALKRHKHHIGPRYIEVYRASGEDFLSVAGGKSSEAQAFL-------------SRGAAV 327
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ ++DFF + + + DGR TG+AFV FA+
Sbjct: 328 ---IVRMRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASE 384
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A++K R +GSRYIELF S+ E+ + L+R
Sbjct: 385 SDAPKALSKHRECIGSRYIELFRSTTAEVQQVLNR 419
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 15/187 (8%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV K + + TG+AF + AL ++R+ +G RY+E+FRS E + + N
Sbjct: 363 VLFVRKPDGRATGDAFVLFASESDAPKALSKHRECIGSRYIELFRSTTAE-VQQVLNRSL 421
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTG----ILRLRGLPFSAGKDDIMDFFKDFV--LS 134
+ R P P + +G +RLRGLP+ A + I++F ++ +
Sbjct: 422 EARTYEPEPLPPLLPHMPLLPQHYITSGTKKECIRLRGLPYEAQVEHILEFLGEYAKNII 481
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG--SRYIELFPSSHEEM 188
+H+ N+ G+P+GEAF++ ++E S A+ + MT G RYIE+F S E+M
Sbjct: 482 FQGVHMVYNAQGQPSGEAFIQM-DSEQSACITAQQKHHRYMTFGKKQRYIEVFQCSGEDM 540
Query: 189 DEALSRG 195
+ L+ G
Sbjct: 541 NLVLTGG 547
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P S D+ DS ++R RGLP+ + DI FF +++ + + +++ GR GE
Sbjct: 213 PGICSKDDEIDS---NCVVRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGE 269
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
A ++F + E A+ + + +G RYIE++ +S E+
Sbjct: 270 ALIKFESQEHRDMALKRHKHHIGPRYIEVYRASGED 305
>gi|149193319|ref|NP_001091947.1| G-rich sequence factor 1 isoform 2 [Homo sapiens]
gi|119626036|gb|EAX05631.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|119626037|gb|EAX05632.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|119626038|gb|EAX05633.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|193786999|dbj|BAG51822.1| unnamed protein product [Homo sapiens]
gi|193787731|dbj|BAG52934.1| unnamed protein product [Homo sapiens]
gi|193788237|dbj|BAG53131.1| unnamed protein product [Homo sapiens]
gi|193788520|dbj|BAG53414.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 111 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 171 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 230
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 231 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 284
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 285 FETHEDAVAAMLKDRSHVHHRYIELFLNS 313
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 22 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 72
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 73 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 120
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 121 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 167
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 122 DDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
+D+++FF D + E+ IH +N DG+ G+A +E + +D + A+ K RM +G RY+E
Sbjct: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
Query: 180 LFPSSHEEMD 189
++ ++E++D
Sbjct: 62 VYEINNEDVD 71
>gi|20073357|gb|AAH27003.1| Hnrpf protein [Mus musculus]
Length = 338
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 56 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
MG RY+EVF+S R E + + S DSA + G +RLRGL
Sbjct: 1 MGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGL 41
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
PF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGH 101
Query: 176 RYIELFPSSHEEM 188
RYIE+F SS EE+
Sbjct: 102 RYIEVFKSSQEEV 114
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 213 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 270
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 271 DRANMQHRYIELFLNS 286
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L V K TGEAF + AL ++++ +G RY+EVF+S ++E
Sbjct: 65 TLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 113
>gi|189238842|ref|XP_970801.2| PREDICTED: similar to fusilli CG8205-PD [Tribolium castaneum]
Length = 683
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 22/155 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ + S+ + + +AV
Sbjct: 281 DMALKRHKHHIGPRYIEVYRASGEDFLSVAGGKSSEAQAFL-------------SRGAAV 327
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ ++DFF + + + DGR TG+AFV FA+
Sbjct: 328 ---IVRMRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASE 384
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A++K R +GSRYIELF S+ E+ + L+R
Sbjct: 385 SDAPKALSKHRECIGSRYIELFRSTTAEVQQVLNR 419
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 15/187 (8%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV K + + TG+AF + AL ++R+ +G RY+E+FRS E + + N
Sbjct: 363 VLFVRKPDGRATGDAFVLFASESDAPKALSKHRECIGSRYIELFRSTTAE-VQQVLNRSL 421
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTG----ILRLRGLPFSAGKDDIMDFFKDFV--LS 134
+ R P P + +G +RLRGLP+ A + I++F ++ +
Sbjct: 422 EARTYEPEPLPPLLPHMPLLPQHYITSGTKKECIRLRGLPYEAQVEHILEFLGEYAKNII 481
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG--SRYIELFPSSHEEM 188
+H+ N+ G+P+GEAF++ ++E S A+ + MT G RYIE+F S E+M
Sbjct: 482 FQGVHMVYNAQGQPSGEAFIQM-DSEQSACITAQQKHHRYMTFGKKQRYIEVFQCSGEDM 540
Query: 189 DEALSRG 195
+ L+ G
Sbjct: 541 NLVLTGG 547
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P S D+ DS ++R RGLP+ + DI FF +++ + + +++ GR GE
Sbjct: 213 PGICSKDDEIDSNC---VVRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGE 269
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
A ++F + E A+ + + +G RYIE++ +S E+
Sbjct: 270 ALIKFESQEHRDMALKRHKHHIGPRYIEVYRASGED 305
>gi|395521342|ref|XP_003764777.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Sarcophilus harrisii]
Length = 465
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 19/157 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF L +++ AL+++++ M RYVEVFRS E + R+
Sbjct: 53 SGEAFVELESEEEIELALKKHKETMAHRYVEVFRSNGVEMDWTLK------------RTA 100
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P S D D G +RLRGLPF+ K+DI++FF + + I + ++ G+ +GE
Sbjct: 101 P--SSPDPAGD-----GYVRLRGLPFNCNKEDIVEFFSGLEIMPNGIMLQVDFRGKNSGE 153
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
AFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 154 AFVQFASQEIAEKALKKHKEKMGHRYIEIFKSSQAEV 190
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A + DI DFF L +I + +DGR TGEA VEFA ED+ AAM+K
Sbjct: 283 FVHMRGLPYKATEKDIYDFFSP--LKPVGAYIEVGADGRVTGEADVEFATHEDAVAAMSK 340
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
D+ + RYIELF +S D +
Sbjct: 341 DKANMQHRYIELFLNSVAAADSGV 364
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D+ +FF + IH +GRP+GEAFVE + E+ + A+
Sbjct: 11 VVKVRGLPWSCSASDVQNFFSGCRIRNGVAGIHFMYTREGRPSGEAFVELESEEEIELAL 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
K + T+ RY+E+F S+ EMD L R
Sbjct: 71 KKHKETMAHRYVEVFRSNGVEMDWTLKR 98
>gi|324507711|gb|ADY43264.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 435
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 54/220 (24%)
Query: 17 MDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
+D+ DV+ + +GEAF L + AL+RN++NMG RYVEVFRS +E A
Sbjct: 134 LDVADVVIDKEPGGRPSGEAFVRLANKQHAEMALERNKKNMGTRYVEVFRSSGEEMENAQ 193
Query: 76 ANEVSDVRG-----------------------------GSPHRS-----------IP--- 92
+ RG G P R+ +P
Sbjct: 194 YTTAASRRGMFPAPRGEPIPLRGLMAAGGYRDRYGYGAGGPMRAPMGRGRPGPYDVPYDR 253
Query: 93 -------RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 145
++ D V T + +RGLP++A DI DFFK E I + N D
Sbjct: 254 FSRYGGGFGGYEEDVLDYDVSTKVY-MRGLPYNANALDIEDFFKPLNCVE--IRLGYNED 310
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185
RP+G+A+V F+ +++ A+++++ ++G+RYIELF ++
Sbjct: 311 RRPSGDAYVLFSTMAEARDALSRNKKSIGTRYIELFSGAN 350
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 15/178 (8%)
Query: 15 QLMDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
Q + + V F + + +GE + L V+ A + +++ M RY+EVF E
Sbjct: 29 QGLYVRSVTFTLTATGRASGECYVELTDAAAVEEAKKFDKKEMSSRYIEVFSVSESEVSW 88
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
I H I A S+ ++ + ++RLRG+PFSA DI +FF +
Sbjct: 89 MIR-----------HGVIKSADSNGTSTGTS-NNYVVRLRGIPFSATVADIKEFFSGLDV 136
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
++ + I GRP+GEAFV AN + ++ A+ +++ +G+RY+E+F SS EEM+ A
Sbjct: 137 AD--VVIDKEPGGRPSGEAFVRLANKQHAEMALERNKKNMGTRYVEVFRSSGEEMENA 192
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+RLRGLPFSA +DD+ +F + + S+ T+ + GR +GE +VE +A + A D
Sbjct: 10 VRLRGLPFSAKEDDVRNFLQGLYVR--SVTFTLTATGRASGECYVELTDAAAVEEAKKFD 67
Query: 170 RMTLGSRYIELFPSSHEEMDEALSRG 195
+ + SRYIE+F S E+ + G
Sbjct: 68 KKEMSSRYIEVFSVSESEVSWMIRHG 93
>gi|194383864|dbj|BAG59290.1| unnamed protein product [Homo sapiens]
Length = 338
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 56 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
MG RY+EVF+S R E + + S DSA + G +RLRGL
Sbjct: 1 MGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGL 41
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
PF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGH 101
Query: 176 RYIELFPSSHEEM 188
RYIE+F SS EE+
Sbjct: 102 RYIEVFKSSQEEV 114
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 213 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 270
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 271 DRANMQHRYIELFLNS 286
Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L V K TGEAF + AL ++++ +G RY+EVF+S ++E
Sbjct: 65 TLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 113
>gi|332819574|ref|XP_526590.3| PREDICTED: G-rich sequence factor 1 [Pan troglodytes]
Length = 547
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 266 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 316
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 317 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 364
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 365 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 411
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 47/195 (24%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 355 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 414
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 415 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 474
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 475 DFGTASSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 528
Query: 156 FANAEDSKAAMAKDR 170
F ED+ AAM KDR
Sbjct: 529 FETHEDAVAAMLKDR 543
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 233 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 292
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 293 EKHRMYMGQRYVEVYEINNEDVD 315
>gi|20987708|gb|AAH29764.1| Hnrpf protein [Mus musculus]
Length = 338
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 56 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
MG RY+EVF+S R E + + S DSA + G +RLRGL
Sbjct: 1 MGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGL 41
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
PF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGH 101
Query: 176 RYIELFPSSHEEM 188
RYIE+F SS EE+
Sbjct: 102 RYIEVFKSSQEEV 114
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 213 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 270
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 271 DRANMQHRYIELFLNS 286
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L V K TGEAF + AL ++++ +G RY+EVF+S ++E
Sbjct: 65 TLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 113
>gi|358341226|dbj|GAA32134.2| heterogeneous nuclear ribonucleoprotein F/H [Clonorchis sinensis]
Length = 404
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 66/109 (60%), Gaps = 10/109 (9%)
Query: 84 GGSPHRSIPRAKS-------HDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSE 135
GG P P +KS + E +D TG +RLRGLPFSA DDI F L
Sbjct: 271 GGPPSHMGPGSKSGGYGPMSNPEPEDPQSVTGHSVRLRGLPFSATADDIDRFLAP--LQP 328
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
++ I MNS GRPTGEA V+FA+ +++K AM KDR +GSRYIELF +S
Sbjct: 329 VNVRIRMNSSGRPTGEAVVDFASHDEAKEAMKKDREKIGSRYIELFLAS 377
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 22/168 (13%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N + GEAF L +++ A + ++MGRRY+EVF S QE A+
Sbjct: 41 NGRSNGEAFIELESKQEIEKATAHHNEHMGRRYIEVFPSTEQEMNNAMGK---------- 90
Query: 88 HRSIPRAKSHDE-GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
HD+ +D + ++RLRGLP+ K +I FF ++ + I + ++ G
Sbjct: 91 ---------HDQYTRDRKEY--VVRLRGLPYDTEKKEIYAFFNGLEIAPNGIGLLVDHMG 139
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
R TGEA+V+F +AE A K +G RYIE+F SS E + + R
Sbjct: 140 RCTGEAYVQFTSAEMLARAKEKHMEKIGHRYIEIFESSMLEANSTIQR 187
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+SA DDI+DFFKD + + I +GR GEAF+E + ++ + A
Sbjct: 3 VVRIRGLPYSARADDIIDFFKDVKIKNGKRGIFFPQGPNGRSNGEAFIELESKQEIEKAT 62
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
A +G RYIE+FPS+ +EM+ A+ +
Sbjct: 63 AHHNEHMGRRYIEVFPSTEQEMNNAMGK 90
>gi|148670393|gb|EDL02340.1| mCG50680 [Mus musculus]
Length = 338
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 56 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
MG RY+EVF+S R E + + S DSA + G +RLRGL
Sbjct: 1 MGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGL 41
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
PF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGH 101
Query: 176 RYIELFPSSHEEM 188
RYIE+F SS EE+
Sbjct: 102 RYIEVFKSSQEEV 114
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGL + A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 213 CVHMRGLSYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 270
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 271 DRANMQHRYIELFLNS 286
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L V K TGEAF + AL ++++ +G RY+EVF+S ++E
Sbjct: 65 TLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 113
>gi|402869627|ref|XP_003898853.1| PREDICTED: G-rich sequence factor 1 [Papio anubis]
Length = 606
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 285 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 335
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 336 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVD--ITFVM 383
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 384 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 430
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 47/195 (24%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
+ IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 374 LHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 433
Query: 75 IANEVSDVRGGSP-----------------------------------HRSIPR--AKSH 97
+ + SP + +P ++
Sbjct: 434 VGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDIRPMTAFENEKEIELPKEVPEKLPEAA 493
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 494 DFGTMSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 547
Query: 156 FANAEDSKAAMAKDR 170
F ED+ AAM KDR
Sbjct: 548 FETHEDAVAAMLKDR 562
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 252 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 311
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 312 EKHRMYMGQRYVEVYEINNEDVD 334
>gi|281427145|ref|NP_001094360.1| G-rich RNA sequence binding factor 1 [Rattus norvegicus]
Length = 479
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 183 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 233
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS A+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 234 L----------MKSLQVKPTPALSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 281
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 282 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 97/209 (46%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 272 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 331
Query: 75 IANEVSDVRGGSPHRS-------------------------------IPR------AKSH 97
+ + SP +P+ A++
Sbjct: 332 VGSHKGKKMVSSPTTKYITEPEVVFEEHEVNEDARPMTAFESEKEIELPKEMSDKLAEAV 391
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G ++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 392 DFGAVPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 445
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 446 FDTHEDAVAAMLKDRSHVQHRYIELFLNS 474
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>gi|339245667|ref|XP_003374467.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316972254|gb|EFV55937.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 370
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 92/210 (43%), Gaps = 43/210 (20%)
Query: 13 HHQLMDIVDVLFVHKNN--KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
HH + D +D + ++N + +GE F + AL R+ + +G RY+EVFRS +E
Sbjct: 67 HHHISDSIDDIRFGQDNSGRASGEGFVRFSNKEATERALDRHMEKIGHRYIEVFRSSMEE 126
Query: 71 YYKAIAN----------------------EVSDVRGGSPHRSI-----------PRAKSH 97
+ + + RGG P PR +
Sbjct: 127 MDRVTRRPQHMAGWGDGGGRIVDHDRGYYDTAGYRGGGPGSMYNDDFFTSSPINPRGGYY 186
Query: 98 DEGKD------SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
D+G L +RGLP+ A +DIM+FF + + ++ I + RPTGE
Sbjct: 187 DQGASFGGRMGGRGAGFALHMRGLPYKATANDIMEFF--YPIKIMNVRILFDERNRPTGE 244
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
A VEF D+ A+ KDR T+G RYIELF
Sbjct: 245 ADVEFQCESDALEALKKDRKTMGERYIELF 274
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 41/126 (32%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-- 166
++R+RGLP+S+ ++DI FF D IH T + +GRP+GEA++EF +A+D A+
Sbjct: 9 VVRVRGLPWSSKEEDIRKFFHD-CSDIIGIHFTYSKEGRPSGEAYLEFGSADDVDKALRH 67
Query: 167 ------------------------------------AKDRM--TLGSRYIELFPSSHEEM 188
A DR +G RYIE+F SS EEM
Sbjct: 68 HHISDSIDDIRFGQDNSGRASGEGFVRFSNKEATERALDRHMEKIGHRYIEVFRSSMEEM 127
Query: 189 DEALSR 194
D R
Sbjct: 128 DRVTRR 133
>gi|395857260|ref|XP_003801023.1| PREDICTED: G-rich sequence factor 1 [Otolemur garnettii]
Length = 528
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 90/204 (44%), Gaps = 43/204 (21%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 321 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 380
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ SP + I K E AV
Sbjct: 381 VGAHKGKKIASSPMAKYITEPEMVFEEHEGNEDIRPMTAFENEKEIELPKEMSEKLPEAV 440
Query: 106 HTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G + +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 441 DFGATPSLHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFD 496
Query: 158 NAEDSKAAMAKDRMTLGSRYIELF 181
ED+ AAM KDR + RYIELF
Sbjct: 497 THEDAVAAMLKDRSHVHHRYIELF 520
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 22/138 (15%)
Query: 52 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 111
+R MG++YVEV+ I NE D KS AV+ G++R
Sbjct: 261 HRMYMGQQYVEVYE---------INNEDVDAL----------MKSLQVKSPPAVNDGVVR 301
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDR 170
LRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K R
Sbjct: 302 LRGLPYSCDEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 359
Query: 171 MTLGSRYIELFPSSHEEM 188
+G+RYIE+FPS E+
Sbjct: 360 EEIGNRYIEIFPSRRNEV 377
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +
Sbjct: 199 LIRAQGLPWSCTVEDVLAFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEXPAVRGR 258
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
RM +G +Y+E++ ++E++D
Sbjct: 259 FVHRMYMGQQYVEVYEINNEDVD 281
>gi|335775266|gb|AEH58514.1| heterogeneous nuclear ribonucleoprotein-like protein [Equus
caballus]
Length = 337
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 56 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
MG RY+EVF+S R E + + S P S D D G +RLRGL
Sbjct: 1 MGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GFVRLRGL 41
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
PF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGH 101
Query: 176 RYIELFPSSHEEM 188
RYIE+F SS EE+
Sbjct: 102 RYIEVFKSSQEEV 114
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 213 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 270
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 271 DRANMQHRYIELFLNS 286
Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L V K TGEAF + AL ++++ +G RY+EVF+S ++E
Sbjct: 65 TLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 113
>gi|26251966|gb|AAH40485.1| GRSF1 protein [Homo sapiens]
Length = 435
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 26/169 (15%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 184 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 234
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + ++IT
Sbjct: 235 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGL----NIVYITF 280
Query: 143 NSD---GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
D R TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 281 VMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 329
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 211 EKHRMYMGQRYVEVYEINNEDVD 233
>gi|195124401|ref|XP_002006681.1| GI18454 [Drosophila mojavensis]
gi|193911749|gb|EDW10616.1| GI18454 [Drosophila mojavensis]
Length = 1008
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 28/158 (17%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 357 DMALKRHKHHIGSRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 400
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS---------DGRPTGEAFVEF 156
I+R+RGLP+ +++FF E H+ S DGR TG+AFV F
Sbjct: 401 AQVIIRMRGLPYDCTPKQVLEFF---TTGESPCHVLDGSEGVLFVKKPDGRATGDAFVLF 457
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
AN DS A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 458 ANESDSPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 495
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 50/223 (22%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK------- 73
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E +
Sbjct: 439 VLFVKKPDGRATGDAFVLFANESDSPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD 498
Query: 74 -------------------------------AIANEVSDVRGGSPHRSI--PRAKSHDEG 100
A + ++ + + H ++ P +
Sbjct: 499 PKTYESNNHGQPPLIAQLPTMQLPLLPQVGAAAGHALNPLTANASHANLCPPLTHAPQHL 558
Query: 101 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFAN 158
S +RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++ +
Sbjct: 559 ITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-D 617
Query: 159 AEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
+EDS A+ + M G RYIE+F S ++M+ L+ G
Sbjct: 618 SEDSARLCAQRKHNQFMVFGKKFRYIEVFQCSGDDMNHVLNGG 660
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F + E A+ +
Sbjct: 303 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 362
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ +S E+
Sbjct: 363 HKHHIGSRYIEVYRASGED 381
>gi|313233607|emb|CBY09778.1| unnamed protein product [Oikopleura dioica]
Length = 425
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 5/160 (3%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
V+ + TGEAF L + AL ++++ + RRY+EVF++ R E +A + + +
Sbjct: 151 VMVTDARGRNTGEAFVQLKSHEHAEQALLKHKECIDRRYIEVFKATRAEMSQA-SQSLHN 209
Query: 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK-DFVLSEDSIHI 140
G + S + G D V+ ++++RG+PF A ++ + FF DF +S ++
Sbjct: 210 HCNGDHYYSQQNSSLKGVGLD-GVYRHVVQMRGIPFRATEEQVRSFFGLDFEIS--AVQF 266
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180
+ +D RPTG A V F ED++ AM KD+ +G RYIEL
Sbjct: 267 EIGADHRPTGRASVAFPTHEDAEKAMKKDKECMGKRYIEL 306
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFV---LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
++RLRGLP+S ++++FF D V E +H T+ +GRP GEA++E D + A
Sbjct: 21 VIRLRGLPYSCCGAEVVEFFADIVDIVNGEAGVHFTLTKEGRPNGEAYIELETDADVEKA 80
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
M KDR L RYIE+F ++ EEMD L +
Sbjct: 81 MIKDRTQLQDRYIEIFKATTEEMDYVLEK 109
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 28/182 (15%)
Query: 18 DIVDVL----FVH----KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQ 69
DIVD++ VH K + GEA+ L V+ A+ ++R + RY+E+F++ +
Sbjct: 42 DIVDIVNGEAGVHFTLTKEGRPNGEAYIELETDADVEKAMIKDRTQLQDRYIEIFKATTE 101
Query: 70 EYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
E + E ++ + P ++ ++LRG+P+ D I F +
Sbjct: 102 EMDYVL--EKTERQANQPWENV------------------VKLRGVPYKCTSDRIRQFLR 141
Query: 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
+ + + + ++ GR TGEAFV+ + E ++ A+ K + + RYIE+F ++ EM
Sbjct: 142 ELDIPAHGVVMVTDARGRNTGEAFVQLKSHEHAEQALLKHKECIDRRYIEVFKATRAEMS 201
Query: 190 EA 191
+A
Sbjct: 202 QA 203
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 32/163 (19%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
+++ TG A + A++++++ MG+RY+E+ ++++ + + G P
Sbjct: 271 DHRPTGRASVAFPTHEDAEKAMKKDKECMGKRYIELM---------ILSSQNTPIDGIGP 321
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
+ + ++ +RGLPF DI+ FF + + IH+ M G
Sbjct: 322 ---------------NGEYLFMIHMRGLPFRVHARDIVSFFDPIPILD--IHLEMGPKG- 363
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF-----PSSH 185
PTG V F +A++ A+ +D+ +G RYIELF PS+H
Sbjct: 364 PTGAGQVAFFSAQERSDALKRDKENIGDRYIELFAIKPLPSAH 406
>gi|148233462|ref|NP_001087973.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Xenopus laevis]
gi|52138903|gb|AAH82630.1| LOC494658 protein [Xenopus laevis]
Length = 342
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 19/133 (14%)
Query: 56 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
MG RY+EVF+S E + + +D D DS G +RLRGL
Sbjct: 1 MGHRYIEVFKSNNTEMEWVLKHNSTD----------------DVETDS---DGTVRLRGL 41
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
PF K++I+ FF + + I +T++ GR TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCSKEEIVQFFSGLRIVPNGITLTVDYQGRSTGEAFVQFASKEIAENALGKHKERIGH 101
Query: 176 RYIELFPSSHEEM 188
RYIE+F SS E+
Sbjct: 102 RYIEIFKSSRGEI 114
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
Query: 88 HRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
+R + +A + + H+G + +RGLPF A + DI +FF L+ +HI + +DG
Sbjct: 190 NRGMTQAYAGAGDGSAGFHSGHFVHMRGLPFRASESDIANFFSP--LTPIRVHIDVGADG 247
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
R TGEA VEFA ED+ AAM+KD+ + RYIELF +S
Sbjct: 248 RATGEADVEFATHEDAVAAMSKDKNNMQHRYIELFLNS 285
>gi|196003222|ref|XP_002111478.1| hypothetical protein TRIADDRAFT_13868 [Trichoplax adhaerens]
gi|190585377|gb|EDV25445.1| hypothetical protein TRIADDRAFT_13868, partial [Trichoplax
adhaerens]
Length = 302
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE--V 79
+L + + + TGE + P A+ ++ + M ++E++ + KA+
Sbjct: 137 LLLLSADGRTTGEGYVAFKTPEIARSAIYKDYKIMANHHIELYDCSLNDALKALQESHIS 196
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDS 137
S R + R KS + +D +RLRGLPF+A + DI +F + ++ +
Sbjct: 197 SSYRKNDKILTNLRQKSQESVRDC------IRLRGLPFTATEPDITNFMGELADKIALNG 250
Query: 138 IHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEM 188
IH+ +N GRP+G+A+++ +AED+ K+A K R LG+R+IE+F S EE+
Sbjct: 251 IHLCINDRGRPSGDAYIQMLSAEDAIKSAEKKHREHLGTRWIEVFQCSREEV 302
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 87/163 (53%), Gaps = 16/163 (9%)
Query: 33 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP 92
G+A+ +Q D AL+R+ Q + ++ + +++ + + + +V G + ++
Sbjct: 41 GQAYVKFEDTVQRDLALKRHSQYIDQKSIRIYKINAGQGF------IPNVGGATIVNALM 94
Query: 93 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK---DFVLSEDSIHITMNSDGRPT 149
++ E +LR++GLP + D+++FFK D + +E+ + + +++DGR T
Sbjct: 95 KSNDRPE-------IALLRIKGLPSTVIAIDVVNFFKGTADVLDNEEGVLLLLSADGRTT 147
Query: 150 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
GE +V F E +++A+ KD + + +IEL+ S + +AL
Sbjct: 148 GEGYVAFKTPEIARSAIYKDYKIMANHHIELYDCSLNDALKAL 190
>gi|198454671|ref|XP_002137931.1| GA27490 [Drosophila pseudoobscura pseudoobscura]
gi|198132901|gb|EDY68489.1| GA27490 [Drosophila pseudoobscura pseudoobscura]
Length = 610
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 25/164 (15%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TGEA+ + V+ A + N+ +MG RY+EVF + +E +A+ R
Sbjct: 94 KNTGEAYVEVATQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------R 140
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGR 147
I G +A +++LRGLP++ + I +FF + D I M+ GR
Sbjct: 141 KIG-------GHGNAF---VVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVMDRRGR 190
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
TGEAFV+F + ED++ A+ ++R +G RYIE+F SS EM A
Sbjct: 191 ATGEAFVQFESQEDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 234
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAA 165
+RLRGLP+SA +I+DF ++ ++ S IH +T DG+ TGEA+VE A ED + A
Sbjct: 53 FIRLRGLPWSATHKEILDFLENVNVTNASQGIHLVTSRVDGKNTGEAYVEVATQEDVEEA 112
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 113 RKLNKASMGHRYIEVFTATPKEAKEAMRK 141
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 491 GSDVEYYT--IHMRGLPYTSFENDVFKFFEP--VRPANVRINYNKKGLHSGTADAYFDTY 546
Query: 160 EDSKAAMAKDRMTLGSRYIELF 181
EDS+ AM + R +GSRYIELF
Sbjct: 547 EDSQIAMKRHREQMGSRYIELF 568
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 5 QVQVLCTIHHQLMDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 63
Q++ T D +LFV + + TGEAF + AL RNR+ +G RY+E+
Sbjct: 164 QIEEFFTGLEIKTDREGILFVMDRRGRATGEAFVQFESQEDTEQALGRNREKIGHRYIEI 223
Query: 64 FRSKRQEYYKA 74
FRS E +A
Sbjct: 224 FRSSIAEMKRA 234
>gi|149033731|gb|EDL88527.1| G-rich RNA sequence binding factor 1 [Rattus norvegicus]
Length = 281
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 97/209 (46%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 74 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 133
Query: 75 IANEVSDVRGGSPHRS-------------------------------IPR------AKSH 97
+ + SP +P+ A++
Sbjct: 134 VGSHKGKKMVSSPTTKYITEPEVVFEEHEVNEDARPMTAFESEKEIELPKEMSDKLAEAV 193
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G ++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 194 DFGAVPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 247
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 248 FDTHEDAVAAMLKDRSHVQHRYIELFLNS 276
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 76/145 (52%), Gaps = 22/145 (15%)
Query: 45 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 104
V AL+++R MG+RYVEV+ I NE D KS A
Sbjct: 7 VQKALEKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKPTPA 47
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSK 163
+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E +
Sbjct: 48 LSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMAN 105
Query: 164 AAMAKDRMTLGSRYIELFPSSHEEM 188
A+ K R +G+RYIE+FPS E+
Sbjct: 106 QALLKHREEIGNRYIEIFPSRRNEV 130
>gi|431900090|gb|ELK08023.1| G-rich sequence factor 1 [Pteropus alecto]
Length = 380
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 10 CTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQ 69
C IH+ I ++++ K G+A + V AL+++R MG+RYVEV+
Sbjct: 68 CRIHNGENGIH--FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---- 121
Query: 70 EYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
I NE D K+ V+ G++RLRGLP+S + DI+DFF
Sbjct: 122 -----INNEDVDAL----------MKNLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFA 166
Query: 130 DFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 167 GLNIVD--ITFVMDFRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 224
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 47/195 (24%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV + + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 168 LNIVDITFVMDFRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 227
Query: 75 IANEVSDVRGGSPHRS-------------------------------IPRAKSH------ 97
+ + SP +P+ S
Sbjct: 228 VGSHKGKKIASSPTAKYITEPEVVFEEHEVNEDIQPMTAFESEKEIELPKEMSEKLPEAV 287
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 288 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 341
Query: 156 FANAEDSKAAMAKDR 170
F ED+ AAM KDR
Sbjct: 342 FDTHEDAVAAMLKDR 356
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 46 LIRAQGLPWSCTVEDVLSFFSDCRIHNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 105
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 106 EKHRMYMGQRYVEVYEINNEDVD 128
>gi|195037855|ref|XP_001990376.1| GH18272 [Drosophila grimshawi]
gi|193894572|gb|EDV93438.1| GH18272 [Drosophila grimshawi]
Length = 622
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 25/164 (15%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TGEA+ + V+ A + N+ +MG RY+EVF + +E A E GG H
Sbjct: 103 KNTGEAYVEVASQEDVEEARKLNKVSMGHRYIEVFTATPKE-----AKEAMRKTGGHGH- 156
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGR 147
+++LRGLP++ + I +FF + D I M+ GR
Sbjct: 157 -----------------AFVVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVMDRRGR 199
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
TGEAFV+F + +D++ A+ ++R +G RYIE+F SS EM A
Sbjct: 200 ATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 243
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIH-ITMNSDGRPTGEAFVEFANAEDSKAA 165
+RLRGLP+SA +I+DF + + IH +T DG+ TGEA+VE A+ ED + A
Sbjct: 62 FIRLRGLPWSATHKEILDFLVNVEVINGSQGIHLVTSRVDGKNTGEAYVEVASQEDVEEA 121
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+++++G RYIE+F ++ +E EA+ +
Sbjct: 122 RKLNKVSMGHRYIEVFTATPKEAKEAMRK 150
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+++ ++D+ FF+ + ++ I N G +G A F EDS+ AM +
Sbjct: 521 IHMRGLPYNSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTYEDSQLAMKRH 578
Query: 170 RMTLGSRYIELF 181
R +GSRYIELF
Sbjct: 579 REQMGSRYIELF 590
Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 5 QVQVLCTIHHQLMDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 63
Q++ T D +LFV + + TGEAF + AL RNR+ +G RY+E+
Sbjct: 173 QIEEFFTGLEIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEI 232
Query: 64 FRSKRQEYYKA 74
FRS E +A
Sbjct: 233 FRSSIAEMKRA 243
>gi|195108109|ref|XP_001998635.1| GI24079 [Drosophila mojavensis]
gi|193915229|gb|EDW14096.1| GI24079 [Drosophila mojavensis]
Length = 605
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 25/164 (15%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TGEA+ + V+ A + N+ +MG RY+EVF + +E A E GG H
Sbjct: 101 KNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFVATPKE-----AKEAMRKTGGHGH- 154
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGR 147
+++LRGLP++ + I +FF + D I M+ GR
Sbjct: 155 -----------------AFVVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVMDRRGR 197
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
TGEAFV+F + +D++ A+ ++R +G RYIE+F SS EM A
Sbjct: 198 ATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 241
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAA 165
+RLRGLP+SA +I+DF + + S IH +T DG+ TGEA+VE A+ ED + A
Sbjct: 60 FIRLRGLPWSATHKEILDFLVNVEVLNGSQGIHLVTSRLDGKNTGEAYVEVASQEDVEEA 119
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 120 RKLNKASMGHRYIEVFVATPKEAKEAMRK 148
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 101 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
+++ V + +RGLP+++ ++D+ FF + ++ I N G +G A F +
Sbjct: 478 RNNDVEYYTIHMRGLPYNSFENDVFKFFDP--IRPANVRINYNKKGLHSGTADAYFDTYD 535
Query: 161 DSKAAMAKDRMTLGSRYIELF 181
DS+ AM + R +GSRYIELF
Sbjct: 536 DSQLAMKRHREQMGSRYIELF 556
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 5 QVQVLCTIHHQLMDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 63
Q++ T D +LFV + + TGEAF + AL RNR+ +G RY+E+
Sbjct: 171 QIEEFFTGLEIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEI 230
Query: 64 FRSKRQEYYKA 74
FRS E +A
Sbjct: 231 FRSSIAEMKRA 241
>gi|24653903|ref|NP_725480.1| fusilli, isoform A [Drosophila melanogaster]
gi|7303049|gb|AAF58117.1| fusilli, isoform A [Drosophila melanogaster]
Length = 557
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 23/155 (14%)
Query: 47 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 106
AL+R++ ++G RY+EV+R+ +++ AIA S+ A++ K + V
Sbjct: 1 MALKRHKHHIGTRYIEVYRASGEDFL-AIAGGASN-----------EAQAFLS-KGAQV- 46
Query: 107 TGILRLRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ A ++DFF VL + + DGR TG+AFV FAN
Sbjct: 47 --IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANE 104
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 105 TDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 139
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 52/225 (23%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANE 78
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + + + +
Sbjct: 83 VLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD 142
Query: 79 VSDVRGGSPHRSIP------------------RAKSHDEGKDSA---------------- 104
+ G H P + SH G A
Sbjct: 143 PKNYESGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQ 202
Query: 105 --VHTGI----LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 156
+ +G +RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++
Sbjct: 203 HLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM 262
Query: 157 ANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
+ E+S A+ R M G RYIE+F S ++M+ L+ G
Sbjct: 263 -DLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 306
>gi|157129243|ref|XP_001655329.1| hypothetical protein AaeL_AAEL011420 [Aedes aegypti]
gi|108872264|gb|EAT36489.1| AAEL011420-PA [Aedes aegypti]
Length = 894
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 22/155 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ V GG A + + S
Sbjct: 321 DMALKRHKHHIGNRYIEVYRATGEDFLA--------VAGG--------ASNEAQAFLSKG 364
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ +++FF + + D I DGR TG+AFV F+
Sbjct: 365 AQVIIRMRGLPYDCTAKQVLEFFANGDNNCTVLDGADGILFVKKPDGRATGDAFVLFSQE 424
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A++K R ++G RYIELF S+ E+ + L+R
Sbjct: 425 TDAPKALSKHRESIGQRYIELFRSTTAEVQQVLNR 459
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 22/203 (10%)
Query: 10 CTIHHQLMDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67
CT+ +D D +LFV K + + TG+AF + AL ++R+++G+RY+E+FRS
Sbjct: 394 CTV----LDGADGILFVKKPDGRATGDAFVLFSQETDAPKALSKHRESIGQRYIELFRST 449
Query: 68 RQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT-------GILRLRGLPFSAG 120
E + + + P + A + H +RLRGLP+ A
Sbjct: 450 TAEVQQVLNRSMDPKTYEPPQPPLIAALPPVQLPLLPQHVITSGTEKNCIRLRGLPYEAK 509
Query: 121 KDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG 174
+ I+ F +DF + +H+ N+ G+ GEAF++ ++E + A+ + M G
Sbjct: 510 VEHILHFLEDFAKNIVYQGVHLVYNAQGQFNGEAFIQM-DSETAAYQSAQQKHHKNMMFG 568
Query: 175 --SRYIELFPSSHEEMDEALSRG 195
RYIE+F S ++M+ L+ G
Sbjct: 569 KKQRYIEVFQCSGDDMNMVLNGG 591
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T I+R RGLP+ + DI FF+ +++ + + ++ GR GEA V F + E A+
Sbjct: 265 TCIVRARGLPWQSSDQDIARFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMAL 324
Query: 167 AKDRMTLGSRYIELFPSSHEE 187
+ + +G+RYIE++ ++ E+
Sbjct: 325 KRHKHHIGNRYIEVYRATGED 345
>gi|194756410|ref|XP_001960472.1| GF13378 [Drosophila ananassae]
gi|190621770|gb|EDV37294.1| GF13378 [Drosophila ananassae]
Length = 885
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 27/197 (13%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV K + + TG+AF + + AL R+R+++G+RY+E+FRS E + + N
Sbjct: 420 VLFVKKPDGRATGDAFVLFAHESDAAKALGRHRESIGQRYIELFRSTTAEVQQVL-NRSM 478
Query: 81 DVR----GGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
D + GG+ P +P H S +RLRGLP+ A + I+
Sbjct: 479 DPKNYESGGNHSQPPLIAQLPTMQLPLLPQHL--ITSGTTRNCIRLRGLPYEAMVEHILH 536
Query: 127 FFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS--RYI 178
F F + +H+ +N+ G+P+GEAF++ ++EDS A+ + M G RYI
Sbjct: 537 FLDGFAKHIIYQGVHMVINAQGQPSGEAFIQM-DSEDSARLCAQRKHNQFMVFGKKFRYI 595
Query: 179 ELFPSSHEEMDEALSRG 195
E+F S ++M+ L+ G
Sbjct: 596 EVFQCSGDDMNMVLNGG 612
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 23/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 337 DMALKRHKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 380
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD-------FVLSEDSIHITMNSDGRPTGEAFVEFAN 158
I+R+RGLP+ ++DFF + + + DGR TG+AFV FA+
Sbjct: 381 AQVIIRMRGLPYDCTAKQVLDFFTTGDTAPCHVLDGNEGVLFVKKPDGRATGDAFVLFAH 440
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 441 ESDAAKALGRHRESIGQRYIELFRSTTAEVQQVLNR 476
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F + E A+ +
Sbjct: 283 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFISQEHRDMALKR 342
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ +S E+
Sbjct: 343 HKHHIGTRYIEVYRASGED 361
>gi|195395450|ref|XP_002056349.1| GJ10899 [Drosophila virilis]
gi|194143058|gb|EDW59461.1| GJ10899 [Drosophila virilis]
Length = 615
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 25/164 (15%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TGEA+ + V+ A + N+ +MG RY+EVF + +E A E GG H
Sbjct: 103 KNTGEAYVEVASQDDVEEARKLNKASMGHRYIEVFVATPKE-----AKEAMRKTGGHGH- 156
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGR 147
+++LRGLP++ + I +FF + D I M+ GR
Sbjct: 157 -----------------AFVVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVMDRRGR 199
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
TGEAFV+F + +D++ A+ ++R +G RYIE+F SS EM A
Sbjct: 200 ATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 243
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAA 165
+RLRGLP+SA +I+DF + + S IH +T DG+ TGEA+VE A+ +D + A
Sbjct: 62 FIRLRGLPWSATHKEILDFLVNVEVLNGSQGIHLVTSRVDGKNTGEAYVEVASQDDVEEA 121
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 122 RKLNKASMGHRYIEVFVATPKEAKEAMRK 150
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 101 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
+++ V + +RGLP+++ ++D+ FF + ++ I N G +G A F +
Sbjct: 498 RNNDVEYYTIHMRGLPYNSFENDVFKFFDP--IRPANVRINYNKKGLHSGTADAYFDTYD 555
Query: 161 DSKAAMAKDRMTLGSRYIELF 181
DS+ AM + R +GSRYIELF
Sbjct: 556 DSQLAMKRHREQMGSRYIELF 576
Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 5 QVQVLCTIHHQLMDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 63
Q++ T D +LFV + + TGEAF + AL RNR+ +G RY+E+
Sbjct: 173 QIEEFFTGLEIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEI 232
Query: 64 FRSKRQEYYKA 74
FRS E +A
Sbjct: 233 FRSSIAEMKRA 243
>gi|386768028|ref|NP_001246347.1| fusilli, isoform H [Drosophila melanogaster]
gi|383302505|gb|AFH08101.1| fusilli, isoform H [Drosophila melanogaster]
Length = 526
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 27/197 (13%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + + N
Sbjct: 83 VLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAE-VQQVLNRSM 141
Query: 81 DVR----GGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
D + GG P +P H S +RLRGLP+ A + I+
Sbjct: 142 DPKNYESGGGHSQPPLIAQLPTMQLPLLPQHL--ITSGTTKNCIRLRGLPYEAMVEHILH 199
Query: 127 FFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS--RYI 178
F DF + +H+ +N+ G+P+GEAF++ + E+S A+ R M G RYI
Sbjct: 200 FLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCAQRRHNHYMMFGKKYRYI 258
Query: 179 ELFPSSHEEMDEALSRG 195
E+F S ++M+ L+ G
Sbjct: 259 EVFQCSGDDMNMVLNGG 275
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 23/155 (14%)
Query: 47 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 106
AL+R++ ++G RY+EV+R+ +++ AIA S+ A++ K + V
Sbjct: 1 MALKRHKHHIGTRYIEVYRASGEDFL-AIAGGASN-----------EAQAFLS-KGAQV- 46
Query: 107 TGILRLRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ A ++DFF VL + + DGR TG+AFV FAN
Sbjct: 47 --IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANE 104
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 105 TDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 139
>gi|195056424|ref|XP_001995099.1| GH22967 [Drosophila grimshawi]
gi|193899305|gb|EDV98171.1| GH22967 [Drosophila grimshawi]
Length = 1007
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 28/158 (17%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 334 DMALKRHKHHIGSRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 377
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI---------TMNSDGRPTGEAFVEF 156
I+R+RGLP+ +++FF E H+ DGR TG+AFV F
Sbjct: 378 AQVIIRMRGLPYDCTPKQVLEFFTT---GESPCHVLDGNEGVLFVKKPDGRATGDAFVLF 434
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
AN DS A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 435 ANECDSSKALGRHRESIGQRYIELFRSTTAEVQQVLNR 472
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 94/223 (42%), Gaps = 49/223 (21%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN--- 77
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + +
Sbjct: 416 VLFVKKPDGRATGDAFVLFANECDSSKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD 475
Query: 78 ---------------------------EVSDVRGGSPHRSIPRAKSHDEGKDSAVHT--- 107
+V GG + SH H
Sbjct: 476 PKTYESNNHSQPPLIAQLPTMQLPLLPQVGAAAGGHALNPLSANASHANLCPQLPHAPQH 535
Query: 108 --------GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFA 157
+RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++
Sbjct: 536 LITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQMD 595
Query: 158 NAEDSKAAMAKDR---MTLGS--RYIELFPSSHEEMDEALSRG 195
E ++ + M G RYIE+F S ++M+ L+ G
Sbjct: 596 LEESARLCAQRKHNQFMVFGKKFRYIEVFQCSGDDMNHVLNGG 638
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F + E A+ +
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 339
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ +S E+
Sbjct: 340 HKHHIGSRYIEVYRASGED 358
>gi|170577075|ref|XP_001893871.1| RNA binding protein [Brugia malayi]
gi|158599846|gb|EDP37285.1| RNA binding protein, putative [Brugia malayi]
Length = 519
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 59/225 (26%)
Query: 17 MDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA- 74
+++ DV+ + + +GEAF + AL+RNR NMG RYVEVFRS E K+
Sbjct: 155 LEVADVVIDKELGGRPSGEAFVRFASKQHAEMALERNRNNMGSRYVEVFRSSGDELEKSR 214
Query: 75 -------------------------------IANEVSDVRG------GSPHRSI----PR 93
A ++ VR G P R++ PR
Sbjct: 215 EGHVVPPTSLRSLAVERSFPTPRTEPIPLRFAAAKLGGVRPYRREEYGGPLRNVSMGRPR 274
Query: 94 AKSHD--------------EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
A +D E + +RGLP+SA DI DFFK E I
Sbjct: 275 AGPYDAPYSRYARFQDYGYEDDFDCDDPAKIYMRGLPYSANALDIEDFFKPLNCVE--IQ 332
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+ N D RP+G+A V F +++ AM++++ +G+RYIELF ++
Sbjct: 333 LGFNEDRRPSGDACVIFGTVGEARDAMSRNKQCIGNRYIELFTAA 377
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 99 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 158
EG + ++RLRG+PFSA +D+ +FF +++ + I GRP+GEAFV FA+
Sbjct: 123 EGDQDTPYNFVVRLRGIPFSATNNDVKEFFSGLEVAD--VVIDKELGGRPSGEAFVRFAS 180
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
+ ++ A+ ++R +GSRY+E+F SS +E++++
Sbjct: 181 KQHAEMALERNRNNMGSRYVEVFRSSGDELEKS 213
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 67 KRQEYYKAIANEVSDV--RGGSPHRSIPRAKSHDEGKDSAVHTGI-------LRLRGLPF 117
+++E +AI E +++ + +P I + + + + + I +RLRGLPF
Sbjct: 4 EKKEQSEAIVEETAEIETKAEAPEGEIEKTDTEQTAETTTRNKEIDPNTSNYIRLRGLPF 63
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
SA +DD+ F + L S+ T+ S GR +GE +VE + ++ A D+ + +RY
Sbjct: 64 SAKEDDVRAFLEG--LEVKSVTFTLTSMGRASGECYVELVDKVAAEEAKRFDKQEMNNRY 121
Query: 178 IE 179
IE
Sbjct: 122 IE 123
>gi|241339179|ref|XP_002408443.1| splicing factor hnRNP-F, putative [Ixodes scapularis]
gi|215497357|gb|EEC06851.1| splicing factor hnRNP-F, putative [Ixodes scapularis]
Length = 293
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 32/181 (17%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI----ANEVSDVRGGSP 87
+GEA+ L V+ LQR+ +++G RY+EVF+SKR E + A++ + G
Sbjct: 37 SGEAYIELESEQDVEVGLQRHNEHIGHRYIEVFKSKRSEMDWVVKRSGAHQQDSLNDGCV 96
Query: 88 H-RSIPRAKSHDE----------------------GKDSAVHTG-ILRLRGLPFSAGKDD 123
R +P S +E + SA TG + +RGLPF A + D
Sbjct: 97 RLRGLPFGCSKEEIAQFFSGFVEEDGYGDFGGSGGARYSA--TGHFVHMRGLPFRATERD 154
Query: 124 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
I +FF+ ++ ++H+ GRP+GE VEFA E++ AM+KD+ + RYIELF +
Sbjct: 155 IFEFFQP--MNPMNVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRYIELFLN 212
Query: 184 S 184
S
Sbjct: 213 S 213
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+H+T++ +GRP+GEA++E + +D + + + +G RYIE+F S EMD + R
Sbjct: 26 VHMTLSREGRPSGEAYIELESEQDVEVGLQRHNEHIGHRYIEVFKSKRSEMDWVVKR 82
>gi|195488502|ref|XP_002092343.1| GE14142 [Drosophila yakuba]
gi|194178444|gb|EDW92055.1| GE14142 [Drosophila yakuba]
Length = 889
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 23/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 334 DMALKRHKHHIGSRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 377
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFAN 158
I+R+RGLP+ A ++DFF VL + + DGR TG+AFV FA+
Sbjct: 378 AQVIIRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAH 437
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 438 ESDASKALCRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 52/225 (23%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANE 78
VLFV K + + TG+AF + + AL R+R+++G+RY+E+FRS E + + + +
Sbjct: 417 VLFVKKPDGRATGDAFVLFAHESDASKALCRHRESIGQRYIELFRSTTAEVQQVLNRSMD 476
Query: 79 VSDVRGGSPHRSIP------------------RAKSHDEGKDSA---------------- 104
+ G H P + SH G A
Sbjct: 477 PKNYESGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQ 536
Query: 105 --VHTG----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 156
+ +G +RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++
Sbjct: 537 HLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM 596
Query: 157 ANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
+ E+S A+ R M G RYIE+F S ++M+ L+ G
Sbjct: 597 -DLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 640
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F E A+ +
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFECQEHRDMALKR 339
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ +S E+
Sbjct: 340 HKHHIGSRYIEVYRASGED 358
>gi|194882767|ref|XP_001975482.1| GG22342 [Drosophila erecta]
gi|190658669|gb|EDV55882.1| GG22342 [Drosophila erecta]
Length = 892
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 23/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 334 DMALKRHKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 377
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD-------FVLSEDSIHITMNSDGRPTGEAFVEFAN 158
I+R+RGLP+ A ++DFF + + + DGR TG+AFV FA+
Sbjct: 378 AQVIIRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAH 437
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 438 ESDASKALCRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 52/225 (23%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANE 78
VLFV K + + TG+AF + + AL R+R+++G+RY+E+FRS E + + + +
Sbjct: 417 VLFVKKPDGRATGDAFVLFAHESDASKALCRHRESIGQRYIELFRSTTAEVQQVLNRSMD 476
Query: 79 VSDVRGGSPHRSIP------------------RAKSHDEGKDSA---------------- 104
+ G H P + SH G A
Sbjct: 477 PKNYESGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQ 536
Query: 105 --VHTG----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 156
+ +G +RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++
Sbjct: 537 HLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM 596
Query: 157 ANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
+ E+S A+ R M G RYIE+F S ++M+ L+ G
Sbjct: 597 -DLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 640
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F E A+ +
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ +S E+
Sbjct: 340 HKHHIGTRYIEVYRASGED 358
>gi|403281341|ref|XP_003945266.1| PREDICTED: LOW QUALITY PROTEIN: G-rich sequence factor 1 [Saimiri
boliviensis boliviensis]
Length = 439
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 21/175 (12%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G R V+ R+ +Y
Sbjct: 274 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRXVKQILMMRKCHY-- 331
Query: 75 IANEVSDVRGGSP-HRSIPR--AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
D++ G + +P ++ D G +H + +RGLPF A DI++FF
Sbjct: 332 ------DLKSGEKLPKEVPEKLPEAADFGTTPCLH--FVHMRGLPFQANAQDIINFFAPL 383
Query: 132 VLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 384 ----KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 434
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 22/158 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 185 FLLNRDGKRRGDALIEMESEQDVQKALEKHRLYMGQRYVEVYE---------INNEDVDA 235
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 236 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIIDFFAGLNIVD--ITFVM 283
Query: 143 NSDG-RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
+ G R TGEA+V+F E + A+ K R +G+R ++
Sbjct: 284 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRXVK 321
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + ++ IH +N DG+ G+A +E + +D + A+
Sbjct: 152 LIRAQGLPWSCTIEDVLNFFSDCRIRNGQNGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K R+ +G RY+E++ ++E++D
Sbjct: 212 EKHRLYMGQRYVEVYEINNEDVD 234
>gi|327271497|ref|XP_003220524.1| PREDICTED: RNA-binding protein 12-like [Anolis carolinensis]
Length = 1418
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 16/193 (8%)
Query: 13 HHQLMDIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
H +D V +L V +NN G F P AL+RNR M +RYVEV + ++
Sbjct: 322 HGLRVDAVHILKDHVGRNN---GNGFVKFCSPPDTFEALKRNRMLMIQRYVEVSPATERQ 378
Query: 71 YYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDSAVHTG-----ILRLRGLPFSA 119
+ A I + + G H +++ +KS + K S + + L+GLPF +
Sbjct: 379 WVTAGGHITFKQTMGPSGQNHPSPQTLSMSKSPNGQKRSRSRSPHDQGFCVYLKGLPFES 438
Query: 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
++DFFK + EDSI+I +G+ GE FVEF N D KAA+ + +G+R+I+
Sbjct: 439 ENKHVIDFFKKLDIVEDSIYIAYGPNGKALGEGFVEFRNEADYKAALCHHKQYIGNRFIQ 498
Query: 180 LFPSSHEEMDEAL 192
+ P + + M E +
Sbjct: 499 VHPITKKAMLEKI 511
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA + D+ DFF L D++HI + GR G FV+F + D+ A+ ++
Sbjct: 303 VSIHGMPFSATESDVKDFFHG--LRVDAVHILKDHVGRNNGNGFVKFCSPPDTFEALKRN 360
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 361 RMLMIQRYVEVSPATERQWVTA 382
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ + L SS EM + R
Sbjct: 60 TGGAIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 6/177 (3%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K GE F AL ++Q +G R+++V ++ +
Sbjct: 450 LDIVEDSIYIAYGPNGKALGEGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITKKAMLE 509
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
I E+ R S + + EG+ R+ +P++ K +I+ F + +
Sbjct: 510 KI--EMIRKRLQSFNYDQREIMINTEGEMGPPKL-CARISNIPYNITKMEIIQFLEGLAV 566
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
E+SI I ++++G+ G+A V+ ED++ + R L R + L S EEM E
Sbjct: 567 DENSIQILVDTNGQGLGQALVQLKTEEDARKSERLHRKKLNGRDVVLRLISFEEMKE 623
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G TGEA V F + +++ AA+
Sbjct: 812 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMTTGEAMVAFESRDEAMAAVVD 871
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 872 LNDR-PIGSRKVKL 884
>gi|170047639|ref|XP_001851321.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870002|gb|EDS33385.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 677
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 22/155 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++ RY+EV+R+ +++ V GG A + + S
Sbjct: 100 DMALKRHKHHISNRYIEVYRASGEDFLA--------VAGG--------ASNEAQAFLSKG 143
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLS------EDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ +++FF + S D I DGR TG+AFV FA
Sbjct: 144 AQVIIRMRGLPYDCTAKQVLEFFANGETSCTVLDGADGILFVKKPDGRATGDAFVLFAQE 203
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A++K R ++G RYIELF S+ E+ + L+R
Sbjct: 204 SDASKALSKHRESIGQRYIELFRSTTAEVQQVLNR 238
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 26/205 (12%)
Query: 10 CTIHHQLMDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67
CT+ +D D +LFV K + + TG+AF + AL ++R+++G+RY+E+FRS
Sbjct: 173 CTV----LDGADGILFVKKPDGRATGDAFVLFAQESDASKALSKHRESIGQRYIELFRST 228
Query: 68 RQEYYKAIANEVSDVRGGSPHR----------SIPRAKSHDEGKDSAVHTGILRLRGLPF 117
E + + N D + P + +P H S +RLRGLP+
Sbjct: 229 TAEVQQVL-NRSMDPKTYEPPQPPLIAALPPVQMPLLPQHV--ITSGTEKNCIRLRGLPY 285
Query: 118 SAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF---ANAEDSKAAMAKDRMT 172
A + I+ F +DF + +H+ N+ G+ GEAF++ A S M
Sbjct: 286 EAKVEHILHFLEDFAKHIVYQGVHLVYNAQGQFNGEAFIQMDSEVAAYQSAQQKHHKNMM 345
Query: 173 LG--SRYIELFPSSHEEMDEALSRG 195
G RYIE+F S ++M+ L+ G
Sbjct: 346 FGKKQRYIEVFQCSGDDMNMVLNGG 370
>gi|170587834|ref|XP_001898679.1| fusilli [Brugia malayi]
gi|158593949|gb|EDP32543.1| fusilli, putative [Brugia malayi]
Length = 467
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 18/163 (11%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L + + GEA Q + AL+R+R + RY+EV+R+ ++ + A S+
Sbjct: 58 LCLSPEGRRNGEALVRFEDSEQRELALKRHRHFLHNRYIEVYRATGSDFLQVAAGSNSEA 117
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD----FVLSEDSI 138
+ G A+ I+R+RGLP+ + I++FF + +++ I
Sbjct: 118 -----------VRFVSRGSTGAM---IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGI 163
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
SDGRPTG+AFV F N E + A+ K + T+G+RYIELF
Sbjct: 164 LFVNKSDGRPTGDAFVMFDNEEAGQKALTKHKRTIGTRYIELF 206
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 101 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
+ S V I+R RGLP+ A DI FF ++ + + ++ +GR GEA V F ++E
Sbjct: 19 ETSLVSEVIVRTRGLPWQATDHDIAQFFIGLNIAAGGVALCLSPEGRRNGEALVRFEDSE 78
Query: 161 DSKAAMAKDRMTLGSRYIELF 181
+ A+ + R L +RYIE++
Sbjct: 79 QRELALKRHRHFLHNRYIEVY 99
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 26/175 (14%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV+K++ + TG+AF + AL ++++ +G RY+E+F RQ Y++ EV
Sbjct: 163 ILFVNKSDGRPTGDAFVMFDNEEAGQKALTKHKRTIGTRYIELF---RQLNYRSTQAEVQ 219
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
V + S R H + + RLRGLP+ A ++I++F L E + HI
Sbjct: 220 QVVNRN-LESDQRMMVHGSSRKDCI-----RLRGLPYEAHVENIVEF-----LGETARHI 268
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG--SRYIELFPSSHEEMDEALS 193
D +A + A M +G RYIE+F S E+++ L+
Sbjct: 269 MFQMDSE---------MSAATAAALAHNKYMQIGKKQRYIEVFQCSPEDINLVLT 314
>gi|402589318|gb|EJW83250.1| hypothetical protein WUBG_05840 [Wuchereria bancrofti]
Length = 451
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 59/225 (26%)
Query: 17 MDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA- 74
+++ DV+ + + +GEAF + AL+RNR NMG RYVEVFRS E K+
Sbjct: 87 LEVADVVIDKELGGRPSGEAFVRFASKQHAEMALERNRNNMGSRYVEVFRSSGDELEKSR 146
Query: 75 -------------------------------IANEVSDVRG------GSPHRSI----PR 93
A ++ VR G P R++ PR
Sbjct: 147 EGHIAPPTSLRSLAVERSFPTPRTEPIPLRFAAAKLGGVRPYRREEYGGPLRNVSMGRPR 206
Query: 94 AKSHD--------------EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
A +D E + +RGLP+SA DI DFFK E I
Sbjct: 207 AGPYDAPYSRYARFQDYGYEDDFDCDDPAKIYMRGLPYSANALDIEDFFKPLNCVE--IQ 264
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+ N D RP+G+A V F +++ AM++++ +G+RYIELF ++
Sbjct: 265 LGFNEDRRPSGDACVIFGTVGEARDAMSRNKQCIGNRYIELFTAA 309
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 19/160 (11%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GE + L + A + ++Q M RY+EVF E + V +R
Sbjct: 5 SGECYVELVDKAAAEEAKRFDKQEMNNRYIEVFNVTESEVVWMTRHNV--IR-------- 54
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
+G + ++RLRG+PFSA DD+ +FF +++ + I GRP+GE
Sbjct: 55 -------KGDQETPYNFVVRLRGIPFSATNDDVKEFFSGLEVAD--VVIDKELGGRPSGE 105
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
AFV FA+ + ++ A+ ++R +GSRY+E+F SS +E++++
Sbjct: 106 AFVRFASKQHAEMALERNRNNMGSRYVEVFRSSGDELEKS 145
>gi|24653910|ref|NP_725483.1| fusilli, isoform B [Drosophila melanogaster]
gi|21645398|gb|AAM70984.1| fusilli, isoform B [Drosophila melanogaster]
gi|27820059|gb|AAO25059.1| GH20047p [Drosophila melanogaster]
gi|71834259|gb|AAZ41802.1| GH11127p [Drosophila melanogaster]
gi|220947106|gb|ACL86096.1| fus-PB [synthetic construct]
Length = 633
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 23/155 (14%)
Query: 47 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 106
AL+R++ ++G RY+EV+R+ +++ AIA S+ A++ K + V
Sbjct: 1 MALKRHKHHIGTRYIEVYRASGEDFL-AIAGGASN-----------EAQAFLS-KGAQV- 46
Query: 107 TGILRLRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ A ++DFF VL + + DGR TG+AFV FAN
Sbjct: 47 --IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANE 104
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 105 TDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 139
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 52/225 (23%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANE 78
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + + + +
Sbjct: 83 VLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD 142
Query: 79 VSDVRGGSPHRSIP------------------RAKSHDEGKDSA---------------- 104
+ G H P + SH G A
Sbjct: 143 PKNYESGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQ 202
Query: 105 --VHTGI----LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 156
+ +G +RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++
Sbjct: 203 HLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM 262
Query: 157 ANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
+ E+S A+ R M G RYIE+F S ++M+ L+ G
Sbjct: 263 -DLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 306
>gi|410041428|ref|XP_003950996.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H2-like [Pan troglodytes]
Length = 442
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 21/168 (12%)
Query: 22 VLFVHKN-NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + +GEAF L + A ++R+ MG RYVEVF+S E + VS
Sbjct: 41 ICFIYTGEGRPSGEAFVELESADEAKLA-XKDRETMGHRYVEVFKSNSVE-----MDWVS 94
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
G S D D G + LRGLPF K++I+ FF + + I +
Sbjct: 95 KHTG---------LNSPDTAND-----GFVWLRGLPFGCXKEEIVHFFSGLEIVPNGITL 140
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+ A+ E ++ A+ K R +G RYIE+F +S E+
Sbjct: 141 XVDFQGRSTGEAFVQLASQEIAEMALKKHRERIGHRYIEIFXNSQAEV 188
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
+++++GL +S D++M F + + S I +GRP+GEAFVE +A+++K A
Sbjct: 11 VVKVQGLSWSCSADEVMHFSDCKIQNGTSGICFIYTGEGRPSGEAFVELESADEAKLA-X 69
Query: 168 KDRMTLGSRYIELFPSSHEEMD 189
KDR T+G RY+E+F S+ EMD
Sbjct: 70 KDRETMGHRYVEVFKSNSVEMD 91
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 84 GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 143
G S HR S VHT RGLP+ A K+ +F+ L +HI +
Sbjct: 267 GMSDHRYGDSGSSFQSTTGHCVHT-----RGLPYRATKNXY-NFYSPLNLMR--VHIEIG 318
Query: 144 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
D R TG A VEFA ED+ AAMAKD+ + RY+E+F
Sbjct: 319 HDDRVTGRADVEFAAHEDAVAAMAKDKANMQHRYMEIF 356
>gi|351707744|gb|EHB10663.1| G-rich sequence factor 1 [Heterocephalus glaber]
Length = 455
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 44/209 (21%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P AL ++R+ +G RY+E+F S+R E
Sbjct: 245 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALMKHREEIGNRYIEIFPSRRNEVRTH 304
Query: 75 IAN-------------------------EVS-DVRGGSPHRS-----IPR------AKSH 97
+ + EV+ D+R + + +P+ ++
Sbjct: 305 VGSHKGRKVVSSPTAKCITEPDVVFEEHEVNEDIRPMTTFENEKEIELPKEVLEKVPEAA 364
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G ++H ++ +RGLPF A DI++ F + + ITM +S G+ TGEA V
Sbjct: 365 DLGAMPSLH--VVHMRGLPFQANAQDIINVCA-FFMPLRPVRITMEYSSSGKATGEAHVH 421
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F + ED+ AAM KDR + RYIELF +S
Sbjct: 422 FGSHEDAVAAMLKDRSHVHHRYIELFLNS 450
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 48/195 (24%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 126 FLLNRDGKRRGDALIEMESERDVQKALEKHRLYMGQRYVEVYE---------INNEDVDA 176
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK-----DFVLSEDS 137
KS V+ G++RLRGLP+S + DI+DFF D + S
Sbjct: 177 L----------MKSLQVKASPLVNDGVVRLRGLPYSCSEKDIVDFFAGAQQFDHIWGITS 226
Query: 138 -----------------------IHITMNSDG-RPTGEAFVEFANAEDSKAAMAKDRMTL 173
I M+ G R TGEA+V+F E + A+ K R +
Sbjct: 227 PMSSFLIVLLYLRSVPTGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALMKHREEI 286
Query: 174 GSRYIELFPSSHEEM 188
G+RYIE+FPS E+
Sbjct: 287 GNRYIEIFPSRRNEV 301
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF+D + SE IH +N DG+ G+A +E + D + A+
Sbjct: 93 LIRAQGLPWSCTVEDVLNFFQDCKIRNSEKGIHFLLNRDGKRRGDALIEMESERDVQKAL 152
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K R+ +G RY+E++ ++E++D
Sbjct: 153 EKHRLYMGQRYVEVYEINNEDVD 175
>gi|195501785|ref|XP_002097942.1| GE10080 [Drosophila yakuba]
gi|194184043|gb|EDW97654.1| GE10080 [Drosophila yakuba]
Length = 597
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 25/161 (15%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TGEA+ + V+ A + N+ +MG RY+EVF + +E +A+ R
Sbjct: 92 KNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------R 138
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGR 147
I G +A +++LRGLP++ + I +FF + D I M+ GR
Sbjct: 139 KIS-------GHGTAF---VVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGR 188
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
TGEAFV+F + +D++ A+ ++R +G RYIE+F SS EM
Sbjct: 189 ATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEM 229
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAA 165
+RLRGLP+SA +I+DF ++ ++ S IH +T DG+ TGEA+VE A+ ED + A
Sbjct: 51 FVRLRGLPWSATHKEILDFLENVNVTNGSSGIHLVTSRVDGKNTGEAYVEVASQEDVEEA 110
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 111 RKLNKASMGHRYIEVFTATPKEAKEAMRK 139
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 478 GNDIEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 533
Query: 160 EDSKAAMAKDRMTLGSRYIELF 181
EDS+ AM + R +GSRYIELF
Sbjct: 534 EDSQVAMKRHREQMGSRYIELF 555
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
+LFV + + TGEAF + AL RNR+ +G RY+E+FRS
Sbjct: 179 ILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRS 224
>gi|198461689|ref|XP_001362087.2| GA20896 [Drosophila pseudoobscura pseudoobscura]
gi|198137420|gb|EAL26667.2| GA20896 [Drosophila pseudoobscura pseudoobscura]
Length = 910
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 22/155 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 353 DMALKRHKHHIGARYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 396
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD-----FVL-SEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ +++FF VL + + + DGR TG+AFV FAN
Sbjct: 397 AQVIIRMRGLPYDCTAKQVLEFFTTGEAPCHVLDANEGVLFVKKPDGRATGDAFVLFANE 456
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 457 GDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 491
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 49/221 (22%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + + N
Sbjct: 435 VLFVKKPDGRATGDAFVLFANEGDAPKALGRHRESIGQRYIELFRSTTAEVQQVL-NRSM 493
Query: 81 DVRG--GSPHRSIPRAK----------------SHDEGK--------------------D 102
D + S H P +H G+
Sbjct: 494 DPKTFETSSHSQPPLIAQLPTMQLPLLPQVGVVTHGNGRVPVPVPANLCPHPHPPQHLIT 553
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAE 160
S +RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++ ++E
Sbjct: 554 SGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DSE 612
Query: 161 DSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
DS A+ + M G RYIE+F S ++M+ L+ G
Sbjct: 613 DSARLCAQRKHNQFMVFGKKFRYIEVFQCSGDDMNMVLNGG 653
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F + E A+ +
Sbjct: 299 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 358
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ +S E+
Sbjct: 359 HKHHIGARYIEVYRASGED 377
>gi|195571637|ref|XP_002103809.1| GD20630 [Drosophila simulans]
gi|194199736|gb|EDX13312.1| GD20630 [Drosophila simulans]
Length = 587
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 25/161 (15%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TGEA+ + V+ A + N+ +MG RY+EVF + +E +A+ R
Sbjct: 91 KNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------R 137
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGR 147
I G +A +++LRGLP++ + I +FF + D I M+ GR
Sbjct: 138 KI-------SGHGTAF---VVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGR 187
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
TGEAFV+F + +D++ A+ ++R +G RYIE+F SS EM
Sbjct: 188 ATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEM 228
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAA 165
+RLRGLP+SA +I+DF ++ ++ S IH +T DG+ TGEA+VE A+ ED + A
Sbjct: 50 FVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEA 109
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 110 RKLNKASMGHRYIEVFTATPKEAKEAMRK 138
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 475 GNDVEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 530
Query: 160 EDSKAAMAKDRMTLGSRYIELF 181
EDS+ AM + R +GSRYIELF
Sbjct: 531 EDSQVAMKRHREQMGSRYIELF 552
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
+LFV + + TGEAF + AL RNR+ +G RY+E+FRS
Sbjct: 178 ILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRS 223
>gi|383858866|ref|XP_003704920.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Megachile rotundata]
Length = 412
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 29/172 (16%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEA+ + P ++ A +R+R +MG RY+EVF++KR E + ++
Sbjct: 56 SGEAYVEMDTPEDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVVKRSGFNL--------- 106
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
++A+ +RLRGLPF K++I FF + + I + + GR TGE
Sbjct: 107 ----------ENAMDDACVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGE 156
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSR----------YIELFPSSHEEMDEALS 193
A+V+F N + ++ A+ K + +G R YIE+F S+ E+ ++
Sbjct: 157 AYVQFVNKDVAERALQKHKEKIGHRWGTDXLAGFGYIEIFRSTLSEVRASIG 208
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S D+IM FF D +S ++ +H+TM+ +GRP+GEA+VE ED + A
Sbjct: 14 VVKLRGLPWSTTVDEIMKFFSDCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKAC 73
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
+DR +G RYIE+F + EM+ + R
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKR 101
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 93 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 152
R G S +H+ + +RGLPF A + DI DFF+ + ++ I + + GRP+GEA
Sbjct: 279 RGNGDAWGGGSGIHS--IHMRGLPFKATEQDIADFFRP--IEPVNVRIILENGGRPSGEA 334
Query: 153 FVEFANAEDSKAAMAKDRMTLGSRYIELF 181
VEFA E++ AM+KD+ + RYIELF
Sbjct: 335 DVEFATHEEAMKAMSKDKSHMSHRYIELF 363
>gi|326918872|ref|XP_003205709.1| PREDICTED: g-rich sequence factor 1-like, partial [Meleagris
gallopavo]
Length = 343
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 86/194 (44%), Gaps = 27/194 (13%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+ I D+ FV++ + TGEA+ P V AL R+++ M RY+EV+ S ++E + ++
Sbjct: 145 LRITDITFVYRGERKTGEAYVQFAAPEMVAKALLRHKEYMENRYIEVYISTKREMQRHLS 204
Query: 77 ------------------NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-------ILR 111
E RG S R A E + TG +
Sbjct: 205 LRKEMIRLRRELGSTAEERESDYTRGSSAEREKEVASEAAESSGPSSQTGSILSSLRAVH 264
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RG P DI+DFF L I I NSDG TGEA V F + +D+ AMAK+R
Sbjct: 265 VRGFPTQVSAQDIIDFFAP--LRPRRILIEYNSDGVATGEADVHFESYDDAVTAMAKERA 322
Query: 172 TLGSRYIELFPSSH 185
L +E+F H
Sbjct: 323 QLQFGAVEVFLKEH 336
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ + G+A L V AL++N + MG RYV+V +E+ D
Sbjct: 57 FLLNRDGRRRGDALIELESKADVQKALEKNLRYMGTRYVKV-------------HEIHDK 103
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
+S+ R +S + G++ LRGLPF + +DDI DFF +++ IT
Sbjct: 104 DVDGLLQSL-RYESQ------VMSDGVVLLRGLPFDSTEDDIADFFAGLRITD----ITF 152
Query: 143 NSDG-RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
G R TGEA+V+FA E A+ + + + +RYIE++ S+ EM LS
Sbjct: 153 VYRGERKTGEAYVQFAAPEMVAKALLRHKEYMENRYIEVYISTKREMQRHLS 204
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVE 155
+E +DS ++R G PF+ K ++M FF + E+ IH +N DGR G+A +E
Sbjct: 16 EENEDSVF---LIRAHGFPFACTKKEMMAFFDSCKIRNGENGIHFLLNRDGRRRGDALIE 72
Query: 156 FANAEDSKAAMAKDRMTLGSRYIEL 180
+ D + A+ K+ +G+RY+++
Sbjct: 73 LESKADVQKALEKNLRYMGTRYVKV 97
>gi|195329730|ref|XP_002031563.1| GM26067 [Drosophila sechellia]
gi|194120506|gb|EDW42549.1| GM26067 [Drosophila sechellia]
Length = 563
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 25/161 (15%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TGEA+ + V+ A + N+ +MG RY+EVF + +E +A+ R
Sbjct: 91 KNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------R 137
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGR 147
I G +A +++LRGLP++ + I +FF + D I M+ GR
Sbjct: 138 KI-------SGHGTAF---VVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGR 187
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
TGEAFV+F + +D++ A+ ++R +G RYIE+F SS EM
Sbjct: 188 ATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEM 228
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAA 165
+RLRGLP+SA +I+DF ++ ++ S IH +T DG+ TGEA+VE A+ ED + A
Sbjct: 50 FVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEA 109
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 110 RKLNKASMGHRYIEVFTATPKEAKEAMRK 138
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 451 GNDVEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 506
Query: 160 EDSKAAMAKDRMTLGSRYIELF 181
EDS+ AM + R +GSRYIELF
Sbjct: 507 EDSQVAMKRHREQMGSRYIELF 528
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
+LFV + + TGEAF + AL RNR+ +G RY+E+FRS
Sbjct: 178 ILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRS 223
>gi|194901932|ref|XP_001980505.1| GG17187 [Drosophila erecta]
gi|190652208|gb|EDV49463.1| GG17187 [Drosophila erecta]
Length = 595
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 25/161 (15%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TGEA+ + V+ A + N+ +MG RY+EVF + +E +A+ R
Sbjct: 91 KNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------R 137
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGR 147
I G +A +++LRGLP++ + I +FF + D I M+ GR
Sbjct: 138 KIS-------GHGTAF---VVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGR 187
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
TGEAFV+F + +D++ A+ ++R +G RYIE+F SS EM
Sbjct: 188 ATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEM 228
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAA 165
+RLRGLP+SA +I+DF ++ ++ S IH +T DG+ TGEA+VE A+ ED + A
Sbjct: 50 FVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEA 109
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 110 RKLNKASMGHRYIEVFTATPKEAKEAMRK 138
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 475 GNDIEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 530
Query: 160 EDSKAAMAKDRMTLGSRYIELF 181
EDS+ AM + R +GSRYIELF
Sbjct: 531 EDSQVAMKRHREQMGSRYIELF 552
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
+LFV + + TGEAF + AL RNR+ +G RY+E+FRS
Sbjct: 178 ILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRS 223
>gi|341902820|gb|EGT58755.1| CBN-SYM-2 protein [Caenorhabditis brenneri]
Length = 761
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 38/186 (20%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH---------RSIP---- 92
D AL+R+R + RY+EV+++ E+ +R P SIP
Sbjct: 262 DLALKRHRNFLLSRYIEVYKAGLDEFMHVATGHPEHIRSFLPRFWLISPPSAPSIPGVSR 321
Query: 93 ------------------------RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
S + + + + I+R+RGLP+ + I FF
Sbjct: 322 SPCRFLTNFSLFLSFPAFPNPYFFSGSSTEAMEFVSANAVIVRMRGLPYDCSDNQIRAFF 381
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ L+E + IT +DGRPTG+AFV+F ED++ + K R +G RYIELF S+ E+
Sbjct: 382 EPLKLTEKILFIT-RTDGRPTGDAFVQFETEEDAQKGLLKHRHIIGQRYIELFKSTAAEV 440
Query: 189 DEALSR 194
+ + R
Sbjct: 441 QQVVKR 446
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
++ P + HD G D + R RGLP+ A + FF + I + ++S+GR
Sbjct: 189 YQPAPILEDHDVGVDG--DNVVCRARGLPWQASDQHVAQFFAGLDIVPGGIALCLSSEGR 246
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
GE V+FA+ E A+ + R L SRYIE++ + +E
Sbjct: 247 RNGEVLVQFASQESRDLALKRHRNFLLSRYIEVYKAGLDEF 287
Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 138 IHITMNSDGRPTGEAFVEFANAE---DSKAAMAKDRMTLG--SRYIELFPSSHEEMD 189
+H+ N+ G P+GEAF++ + + + A + + M +G RYIE+F S+ EE++
Sbjct: 569 VHMVYNNQGHPSGEAFIQMISEQAAAATAAGVHNNFMCVGKKKRYIEVFQSTAEELN 625
>gi|24646105|ref|NP_650120.1| glorund, isoform A [Drosophila melanogaster]
gi|24646107|ref|NP_731639.1| glorund, isoform B [Drosophila melanogaster]
gi|7299517|gb|AAF54704.1| glorund, isoform A [Drosophila melanogaster]
gi|7299518|gb|AAF54705.1| glorund, isoform B [Drosophila melanogaster]
gi|19528177|gb|AAL90203.1| AT27789p [Drosophila melanogaster]
Length = 586
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 25/161 (15%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TGEA+ + V+ A + N+ +MG RY+EVF + +E +A+ R
Sbjct: 91 KNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------R 137
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK--DFVLSEDSIHITMNSDGR 147
I G +A +++LRGLP++ + I +FF D + I M+ GR
Sbjct: 138 KIS-------GHGTAF---VVKLRGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGR 187
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
TGEAFV+F + +D++ A+ ++R +G RYIE+F SS EM
Sbjct: 188 ATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEM 228
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAA 165
+RLRGLP+SA +I+DF ++ ++ S IH +T DG+ TGEA+VE A+ ED + A
Sbjct: 50 FVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEA 109
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 110 RKLNKASMGHRYIEVFTATPKEAKEAMRK 138
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 475 GNDIEYYT--IHMRGLPYTSFENDVFKFFE--PIRPANVRINYNKKGLHSGTADAYFDTY 530
Query: 160 EDSKAAMAKDRMTLGSRYIELF 181
EDS+ AM + R +GSRYIELF
Sbjct: 531 EDSQVAMKRHREQMGSRYIELF 552
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
+LFV + + TGEAF + AL RNR+ +G RY+E+FRS
Sbjct: 178 ILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRS 223
>gi|380029403|ref|XP_003698363.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Apis florea]
Length = 413
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 29/172 (16%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEA+ + ++ A +R+R +MG RY+EVF++KR E + ++
Sbjct: 56 SGEAYVEMDTLEDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVVKRSGMNL--------- 106
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
++A+ G +RLRGLPF K++I FF + + I + + GR TGE
Sbjct: 107 ----------ENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGE 156
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSR----------YIELFPSSHEEMDEALS 193
A+V+F N + ++ A+ K + +G R YIE+F SS E+ ++
Sbjct: 157 AYVQFVNKDVAERALQKHKEKIGHRWGTDXLAGFGYIEIFRSSLSEVRASIG 208
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S D+IM FF D ++ ++ +H+TM+ +GRP+GEA+VE ED + A
Sbjct: 14 VVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMSREGRPSGEAYVEMDTLEDIEKAC 73
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
+DR +G RYIE+F + EM+ + R
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKR 101
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 93 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 152
R G +S +H+ + +RGLPF A + DI DFF+ + ++ I + + GRP+GEA
Sbjct: 281 RGSGDTWGGNSGIHS--IHMRGLPFKATEQDIADFFRP--IEPVNVRIILENGGRPSGEA 336
Query: 153 FVEFANAEDSKAAMAKDRMTLGSRYIELF 181
VEFA E++ AM+KD+ + RYIELF
Sbjct: 337 DVEFATHEEAVKAMSKDKSHMSHRYIELF 365
>gi|340722803|ref|XP_003399791.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Bombus terrestris]
gi|350424200|ref|XP_003493719.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Bombus impatiens]
Length = 414
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 29/172 (16%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEA+ + ++ A +R+R +MG RY+EVF++KR E + ++
Sbjct: 56 SGEAYVEMDTLEDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVVKRSGMNL--------- 106
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
++A+ G +RLRGLPF K++I FF + + I + + GR TGE
Sbjct: 107 ----------ENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGE 156
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSR----------YIELFPSSHEEMDEALS 193
A+V+F N + ++ A+ K + +G R YIE+F SS E+ ++
Sbjct: 157 AYVQFVNKDVAERALQKHKEKIGHRWGTDXLAGFGYIEIFRSSLSEVRASIG 208
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S D+IM FF D ++ ++ +H+TM+ +GRP+GEA+VE ED + A
Sbjct: 14 VVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMSREGRPSGEAYVEMDTLEDIEKAC 73
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
+DR +G RYIE+F + EM+ + R
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKR 101
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 93 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 152
R G +S +H+ + +RGLPF A + DI DFF+ + ++ I + + GRP+GEA
Sbjct: 282 RGSGDTWGGNSGIHS--IHMRGLPFKATEQDIADFFRP--IEPVNVRIILENGGRPSGEA 337
Query: 153 FVEFANAEDSKAAMAKDRMTLGSRYIELF 181
VEFA E++ AM+KD+ + RYIELF
Sbjct: 338 DVEFATHEEAVKAMSKDKSHMSHRYIELF 366
>gi|395501374|ref|XP_003755070.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 [Sarcophilus
harrisii]
Length = 342
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G + A G +RLRGLPF K++I+ FF + + I +TM+ GR TGEAFV+FA+
Sbjct: 9 GPNDAASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQFASK 68
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
E ++ A+ K + +G RYIE+F SS E+
Sbjct: 69 EIAENALGKHKERIGHRYIEIFKSSRSEI 97
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 190 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 247
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 248 ALAAMSKDKNNMQHRYIELFLNS 270
>gi|334313810|ref|XP_001369254.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Monodelphis domestica]
Length = 377
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G + A G +RLRGLPF K++I+ FF + + I +TM+ GR TGEAFV+FA+
Sbjct: 39 GPNDAASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQFASK 98
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
E ++ A+ K + +G RYIE+F SS E+
Sbjct: 99 EIAENALGKHKERIGHRYIEIFKSSRSEI 127
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 220 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 277
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 278 AVAAMSKDKNNMQHRYIELFLNS 300
>gi|194744433|ref|XP_001954699.1| GF16612 [Drosophila ananassae]
gi|190627736|gb|EDV43260.1| GF16612 [Drosophila ananassae]
Length = 600
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 25/161 (15%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TGEA+ + V+ A + N+ +MG RY+EVF + +E +A+ R
Sbjct: 94 KNTGEAYVEVSTQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------R 140
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGR 147
I G +A +++LRGLP++ + I +FF + D I M+ GR
Sbjct: 141 KIS-------GHGNAF---VVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGR 190
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
TGEAFV+F + +D++ A+ ++R +G RYIE+F SS EM
Sbjct: 191 ATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEM 231
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAA 165
+RLRGLP+SA +I+DF ++ ++ S IH +T DG+ TGEA+VE + ED + A
Sbjct: 53 FIRLRGLPWSATHKEILDFLENVNVTNGSQGIHLVTSRVDGKNTGEAYVEVSTQEDVEEA 112
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 113 RKLNKASMGHRYIEVFTATPKEAKEAMRK 141
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+++ ++D+ FF+ + ++ I N G +G A F EDS+ AM +
Sbjct: 487 TIHMRGLPYTSFENDVFKFFE--PIRPANVRINYNKKGLHSGTADAYFDTYEDSQMAMKR 544
Query: 169 DRMTLGSRYIELF 181
R +GSRYIELF
Sbjct: 545 HREQMGSRYIELF 557
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
+LFV + + TGEAF + AL RNR+ +G RY+E+FRS
Sbjct: 181 ILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRS 226
>gi|312385573|gb|EFR30037.1| hypothetical protein AND_00606 [Anopheles darlingi]
Length = 1660
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 22/155 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ V GG A + + +
Sbjct: 300 DMALKRHKHHIGSRYIEVYRANGEDFL--------SVAGG--------ASNEAQAFLTKG 343
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ ++DFF + + D I DGR TG+AFV F
Sbjct: 344 AQVIIRMRGLPYDCTAKQVLDFFANGENSCNVLDGADGILFVKKPDGRATGDAFVLFEQE 403
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D A++K R +G RYIELF S+ E+ + L+R
Sbjct: 404 SDVNKALSKHRELIGQRYIELFRSTTAEVQQVLNR 438
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 18/197 (9%)
Query: 16 LMDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
++D D +LFV K + + TG+AF + V+ AL ++R+ +G+RY+E+FRS E +
Sbjct: 375 VLDGADGILFVKKPDGRATGDAFVLFEQESDVNKALSKHRELIGQRYIELFRSTTAE-VQ 433
Query: 74 AIANEVSDVRGGSPHRS-----IPRAKSHDEGK---DSAVHTGILRLRGLPFSAGKDDIM 125
+ N D + P + +P+ + + S +RLRGLP+ A + I+
Sbjct: 434 QVLNRSMDPKTYEPPQPPLIAQLPQVQMQLLPQHVITSGTEKNCIRLRGLPYEAKVEHIL 493
Query: 126 DFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF---ANAEDSKAAMAKDRMTLG--SRYI 178
F DF + +H+ N+ G+ GEAF++ A A S M G RYI
Sbjct: 494 HFLDDFAKHIVYQGVHLVYNAQGQFNGEAFIQMDSEAAAYQSAQQKHHKNMMFGKKQRYI 553
Query: 179 ELFPSSHEEMDEALSRG 195
E+F S ++M+ L+ G
Sbjct: 554 EVFQCSGDDMNMVLNGG 570
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T I+R RGLP+ + DI FF+ +++ + + ++ GR GEA V F + E A+
Sbjct: 244 TCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMAL 303
Query: 167 AKDRMTLGSRYIELFPSSHEE 187
+ + +GSRYIE++ ++ E+
Sbjct: 304 KRHKHHIGSRYIEVYRANGED 324
>gi|193786713|dbj|BAG52036.1| unnamed protein product [Homo sapiens]
Length = 568
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 11/148 (7%)
Query: 56 MGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG- 108
M +RYVEV + +++ A N + P +++PR+KS K S +
Sbjct: 3 MIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPH 62
Query: 109 ----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
+ L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N D KA
Sbjct: 63 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEVDYKA 122
Query: 165 AMAKDRMTLGSRYIELFPSSHEEMDEAL 192
A+ + + +G+R+I++ P + + M E +
Sbjct: 123 ALCRHKQYMGNRFIQVHPITKKGMLEKI 150
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 89/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F + AL R++Q MG R+++V + K
Sbjct: 89 LDIVEDSIYIAYGPNGKATGEGFVEFRNEVDYKAALCRHKQYMGNRFIQVHPITK----K 144
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 145 GMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQFLEGI 203
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 204 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 262
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 493 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 552
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 553 LNDR-PIGSRKVKL 565
>gi|308498127|ref|XP_003111250.1| CRE-HRPF-1 protein [Caenorhabditis remanei]
gi|308240798|gb|EFO84750.1| CRE-HRPF-1 protein [Caenorhabditis remanei]
Length = 558
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 2/171 (1%)
Query: 19 IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE 78
I V +N + +G+A AL+++R+++G RY+EVF + ++
Sbjct: 30 IESVDIPKRNGRTSGDATVTFSNEDDYKLALKKDREHLGSRYIEVFPMNSAPRRRGDRDD 89
Query: 79 VSDVRGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS 137
GG P R R + H G I+RLRGLPFS DI DF + + D
Sbjct: 90 FRPRGGGPPRDRYSDRGEQHRSGGTGGPDP-IIRLRGLPFSVTARDINDFLQPLGIVRDG 148
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
I + RP+GEA++ F E + A + +G RYIE+F ++H E+
Sbjct: 149 ILLPDQQRARPSGEAYIVFDMLESVQIAKQRHMKNIGHRYIEVFEATHREL 199
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++ RGLP+ A ++D+ FF + +S+ I +GR +G+A V F+N +D K A+ KD
Sbjct: 7 VQCRGLPWEATEEDLRGFFGGNGI--ESVDIPKR-NGRTSGDATVTFSNEDDYKLALKKD 63
Query: 170 RMTLGSRYIELFP 182
R LGSRYIE+FP
Sbjct: 64 REHLGSRYIEVFP 76
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+LR+RG+PF A ++D+ DFF+ + + + + ++ R +G+A V F + +D A+ K
Sbjct: 482 VLRMRGVPFRATEEDVYDFFR--PIRPNKVELIRDNQFRASGDARVIFFSRKDYDEALMK 539
Query: 169 DRMTLGSRYIELFP 182
D+ +G RYIE+ P
Sbjct: 540 DKQYMGERYIEMIP 553
>gi|74095965|ref|NP_001027829.1| swan [Takifugu rubripes]
gi|31324616|gb|AAP48570.1| swan [Takifugu rubripes]
Length = 889
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
+ TG+A P + A++R MG+R++E+ Q++ +I N + S ++
Sbjct: 336 RHTGKAMVKFFSPQESFEAVKRGGGMMGQRFIEINPGSEQQW-ASINNGTASQASHSGNK 394
Query: 90 SIPRAKSH-----------DEGKDSAVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSED 136
S + H G+ + H + L+GLP+ A K I +FF + + ED
Sbjct: 395 SNIELQQHCRNNSGVEARDQRGRSRSPHRQEFCIYLKGLPYEADKKQIKEFFNNLAIIED 454
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
SI+I +GR TGE F+EF +D KAA+ +GSR+I++ P S + M E +
Sbjct: 455 SIYIAYGPNGRATGEGFLEFKTEQDHKAALGAHMQYMGSRFIQVHPVSRKGMLEKI 510
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-- 166
+++L+ +PF+ D+IMDFF + + S+ + + G PTGEA V F N E++ AA+
Sbjct: 814 VVKLQNMPFTVTVDEIMDFFYGYQVVPGSVCLQFSEKGLPTGEAMVAFQNHEEATAAVLD 873
Query: 167 AKDRMTLGSRYIEL 180
DR +G+R +++
Sbjct: 874 LNDR-PIGARKVKI 886
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
++ + L SS EM + R
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMHSMIELSR 87
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
L+ LPF+ + D+ FF+ L D++ ++ GR TG+A V+F + ++S A+ +
Sbjct: 303 LQNLPFTCTEVDVRGFFRG--LGVDAVRFLKDAQGRHTGKAMVKFFSPQESFEAVKRGGG 360
Query: 172 TLGSRYIELFPSSHEEM 188
+G R+IE+ P S ++
Sbjct: 361 MMGQRFIEINPGSEQQW 377
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 14 HQLMDIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY 71
+ L I D +++ N + TGE F AL + Q MG R+++V R
Sbjct: 447 NNLAIIEDSIYIAYGPNGRATGEGFLEFKTEQDHKAALGAHMQYMGSRFIQVHPVSR--- 503
Query: 72 YKAIANEVSDVRGGSPHRSIPRAKSHDEGKD---SAVHTGILRLRGLPFSAGKDDIMDFF 128
K + ++ +R R SH GK S + + +P++ K D+ F
Sbjct: 504 -KGMLEKIDAIRK--------REASHGGGKSQDGSKNPRNCVHITNIPYNISKKDVRAFL 554
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ L EDS+ + +S G G++ + + ED++ A R L R + + E+M
Sbjct: 555 EGVGLYEDSLKVLTDSHGNGLGQSIFQLRSEEDARKAERLHRQKLNGRDAFVHLVTVEQM 614
Query: 189 DE 190
E
Sbjct: 615 KE 616
>gi|328874866|gb|EGG23231.1| hypothetical protein DFA_05363 [Dictyostelium fasciculatum]
Length = 939
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
+F + N K TG+A + +L R++Q MG RY+EV S+R+ S +
Sbjct: 461 IFYNSNGKQTGDASVEFATEEDANLSLDRHKQMMGTRYIEVI-SRRKHPPPPPPPSPSQL 519
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
+ S + S + + +L+LRGLPFS DI F + + ++I +TM
Sbjct: 520 QLQSSSGQNSGSASGGSSNTTTSNGKVLKLRGLPFSISTMDIRKFLNGYPIKSNNILMTM 579
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181
N +GR +GEA+VEF ++ ++AA++ T+ SRYIE F
Sbjct: 580 NDEGRFSGEAYVEFQTSDIAQAALSNLQNKTMMSRYIEFF 619
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++LRGLPF+ + DI FF + + I I D RP G A+V F N++D A++++
Sbjct: 801 VKLRGLPFTTTESDISTFFNGLDIVQGGIKIVYQRD-RPMGIAYVTFTNSDDYHQALSRN 859
Query: 170 RMTLGSRYIELFPSS 184
LG RYIE+FPS+
Sbjct: 860 NQHLGPRYIEVFPST 874
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
LRGLP+ +D + +FF+ +S I I NS+G+ TG+A VEFA ED+ ++ + +
Sbjct: 435 LRGLPWGVSEDAVREFFQPLDVS--FIDIFYNSNGKQTGDASVEFATEEDANLSLDRHKQ 492
Query: 172 TLGSRYIEL 180
+G+RYIE+
Sbjct: 493 MMGTRYIEV 501
>gi|170586440|ref|XP_001897987.1| RNA recognition motif. [Brugia malayi]
gi|158594382|gb|EDP32966.1| RNA recognition motif [Brugia malayi]
Length = 573
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 14/169 (8%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N + +GE + L V A + +R + RY+EVF E I + V GG
Sbjct: 40 NGRASGECYVELDDQEAVKEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGVIKSSGGG- 98
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
+ ++RLRGLP+SA DDI +FF ++ D++ I GR
Sbjct: 99 -----------DADSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVA-DAV-IDKEPGGR 145
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
P+GEAFV A E ++ A+ + + +GSRY+E+F SS +EMD + R
Sbjct: 146 PSGEAFVRLATKEYAELALERSKNYMGSRYVEVFRSSADEMDNSYYAAR 194
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T +RLRGLPF+A + DFF F L+ SI T+ S+GR +GE +VE + E K A
Sbjct: 5 TNYIRLRGLPFAAKE---QDFFFFFGLNAKSITFTLTSNGRASGECYVELDDQEAVKEAQ 61
Query: 167 AKDRMTLGSRYIELFPSSHEEM 188
DR + RYIE+F S E+
Sbjct: 62 KLDRNEINGRYIEVFSVSDAEL 83
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 52/195 (26%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE----YYKA--IANEVSD---V 82
+GEAF L + AL+R++ MG RYVEVFRS E YY A I S +
Sbjct: 147 SGEAFVRLATKEYAELALERSKNYMGSRYVEVFRSSADEMDNSYYAARGIPPPTSGPVPL 206
Query: 83 RGGSPHRSI----------------------PRAKS-----------------HDEGKDS 103
RG SP PR +D D
Sbjct: 207 RGISPTLDFRFRDRYADYGRYGGPIRLSSLHPRPSPYDRPYYDRDRYYRYGARYDPEFDE 266
Query: 104 AVHTGILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
A++ ++ +RGLP+S DI +FF+ E I + N + R +G+A V F+ +
Sbjct: 267 AMYDPTVKVFMRGLPYSVTTLDIEEFFRPLNCVE--IKLGYNEERRLSGDALVTFSTMAE 324
Query: 162 SKAAMAKDRMTLGSR 176
++ A+++++ +G+R
Sbjct: 325 AREALSRNKNNMGTR 339
>gi|312081197|ref|XP_003142925.1| RNA binding protein [Loa loa]
gi|307761913|gb|EFO21147.1| RNA binding protein [Loa loa]
Length = 547
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 98/225 (43%), Gaps = 59/225 (26%)
Query: 17 MDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA- 74
+++ DV+ + + +GEAF + AL+RNR NMG RYVEVFRS E K+
Sbjct: 182 LEVADVVIDKELGGRPSGEAFVRFASKQHAEMALERNRNNMGSRYVEVFRSSGDELEKSK 241
Query: 75 ---IANEVS----------------------------DVRG------GSPHRSI----PR 93
IA S VR G P R++ PR
Sbjct: 242 EGHIAPPTSLRSLAAERSFPAPRSEPIPLRFATAKLGGVRPYRREEYGGPLRNVGMSRPR 301
Query: 94 AKSHD--------------EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
A +D + + +RGLP+SA DI DFFK E I
Sbjct: 302 AVPYDVPYSRYSRFQDYSYDDDFDCDDPAKVYMRGLPYSANALDIEDFFKPLNCVE--IQ 359
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+ N D RP+G+A V F +++ AM++++ +G+RYIELF ++
Sbjct: 360 LGFNEDRRPSGDACVIFGTLAEARDAMSRNKQCIGNRYIELFTAA 404
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 92/176 (52%), Gaps = 20/176 (11%)
Query: 17 MDIVDVLFVHKN-NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
+++ V F + + +GE + L + A + ++Q M RY+EVF E
Sbjct: 84 LEVRSVTFTLTSMGRASGECYVELVDKAAAEEAKRFDKQEMNNRYIEVFNVTESEVVWMT 143
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 135
+ V +R +G + ++RLRG+PFSA DD+ +FF +++
Sbjct: 144 RHNV--IR---------------KGDQDTPYNFVVRLRGIPFSATNDDVKEFFTGLEVAD 186
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
+ I GRP+GEAFV FA+ + ++ A+ ++R +GSRY+E+F SS +E++++
Sbjct: 187 --VVIDKELGGRPSGEAFVRFASKQHAEMALERNRNNMGSRYVEVFRSSGDELEKS 240
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+RLRGLPFSA +DD+ F + L S+ T+ S GR +GE +VE + ++ A D
Sbjct: 63 IRLRGLPFSAKEDDVRAFLEG--LEVRSVTFTLTSMGRASGECYVELVDKAAAEEAKRFD 120
Query: 170 RMTLGSRYIELFPSSHEEM 188
+ + +RYIE+F + E+
Sbjct: 121 KQEMNNRYIEVFNVTESEV 139
>gi|195445396|ref|XP_002070305.1| GK11105 [Drosophila willistoni]
gi|194166390|gb|EDW81291.1| GK11105 [Drosophila willistoni]
Length = 642
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 25/164 (15%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 89
K TGEA+ + V+ A + N+ +MG RY+EVF + +E +A+ R
Sbjct: 96 KNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------R 142
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD--GR 147
I G +A +++LRGLP++ + I +FF + D I +D GR
Sbjct: 143 KIG-------GHANAF---VVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVTDRRGR 192
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
TGEAFV+F + +D++ A+ ++R +G RYIE+F SS EM A
Sbjct: 193 ATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 236
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAA 165
+RLRGLP+SA +I+DF ++ ++ S IH +T DG+ TGEA+VE A+ ED + A
Sbjct: 55 FIRLRGLPWSATHKEILDFLENVNVTNGSQGIHLVTSRVDGKNTGEAYVEVASQEDVEEA 114
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 115 RKLNKASMGHRYIEVFTATPKEAKEAMRK 143
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 516 GNDIEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 571
Query: 160 EDSKAAMAKDRMTLGSRYIELF 181
EDS+ AM + R +GSRYIELF
Sbjct: 572 EDSQLAMKRHREQMGSRYIELF 593
Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 5 QVQVLCTIHHQLMDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 63
Q++ T D +LFV + + TGEAF + AL RNR+ +G RY+E+
Sbjct: 166 QIEEFFTGLEIKTDREGILFVTDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEI 225
Query: 64 FRSKRQEYYKA 74
FRS E +A
Sbjct: 226 FRSSIAEMKRA 236
>gi|47222987|emb|CAF99143.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDF-VLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLP+S D++ FF +L+ S IH T +GRP+GEAFVE +D K A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEDDLKVAV 66
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD +
Sbjct: 67 KKDRETMGHRYVEVFKSNNVEMDWVM 92
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 19/146 (13%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF + + A++++R+ MG RYVEVF+S E + + + G
Sbjct: 49 SGEAFVEMETEDDLKVAVKKDRETMGHRYVEVFKSNNVEMDWVMKHTGPNCPG------- 101
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
G++RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 102 ------------TAGDGLIRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGE 149
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRY 177
AFV+FA+ + ++ A+ K + +G R+
Sbjct: 150 AFVQFASQDIAEKALKKHKERIGHRW 175
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A + DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 268 CVHMRGLPYRATETDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 325
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 326 DKANMQHRYVELFLNS 341
>gi|25144421|ref|NP_740878.1| Protein HRPF-1, isoform b [Caenorhabditis elegans]
gi|351061233|emb|CCD68996.1| Protein HRPF-1, isoform b [Caenorhabditis elegans]
Length = 362
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 19 IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE 78
I + +N + +G+A V + AL+++R+++G RY+EVF + + E
Sbjct: 30 IESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDREHLGSRYIEVFPAGGAPTRRGDRGE 89
Query: 79 VSDVRGGSPHR----SIPRAKSHDEG-KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
D RG H + PR + D G S+ I+RLRGLPFS DI DF +
Sbjct: 90 RGD-RGDRDHYRSRGAPPRDRYSDRGGPRSSGPDSIVRLRGLPFSVTSRDISDFLAPLPI 148
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
D I + RP GEA+V F E + A + +G RYIE+F ++H ++
Sbjct: 149 VRDGILLPDQQRARPGGEAYVCFETMESVQIAKQRHMKNIGHRYIEVFEATHRDL 203
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++ RGLP+ A + ++ DFF + + +S+ I +GR +G+A V F N ED A+ KD
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGI--ESLEIPRR-NGRTSGDAKVVFTNEEDYNNALKKD 63
Query: 170 RMTLGSRYIELFPS 183
R LGSRYIE+FP+
Sbjct: 64 REHLGSRYIEVFPA 77
>gi|113951757|ref|NP_001039317.1| G-rich sequence factor 1 [Danio rerio]
gi|112418830|gb|AAI22227.1| Zgc:153305 [Danio rerio]
gi|182890996|gb|AAI64250.1| Zgc:153305 protein [Danio rerio]
Length = 301
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 22/161 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
+ +K K +G+AF L + V AL ++R R +EV + + N+ ++
Sbjct: 71 ILYNKYGKPSGQAFIELEHEEDVGKALDQHRHYPRDRLIEV---------REVTNKDAE- 120
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
+I +A D+ ++RLRGLP+S + DI+ FF + ED + I +
Sbjct: 121 -------AILKASKERVETDT-----VVRLRGLPYSCTEGDIIRFFSGLDVVEDGVTIIL 168
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
N G+ +G+AFVEFA ++ A+ KDR LG+RYIE+FP+
Sbjct: 169 NRRGKSSGDAFVEFATKAMAEKALKKDREILGNRYIEIFPA 209
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 14/155 (9%)
Query: 17 MDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+D+V+ + +++ K +G+AF + AL+++R+ +G RY+E+F + +
Sbjct: 157 LDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKALKKDREILGNRYIEIFPAMKS---- 212
Query: 74 AIANEVSDVRGGSPHRSI-PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
AI S R R PRA+ +++AV ++ +RGLPF A +DI+ FF
Sbjct: 213 AIP---SQNRSWQNDRVFTPRAED-PPLRNTAVTKNVIHMRGLPFDAKAEDIVKFFAPVR 268
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
L + + + +G+PTGEA F ED+ AM+
Sbjct: 269 LMK--VVVEFGPEGKPTGEAEAYFKTHEDAVLAMS 301
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I++ +GLP+S +DIM FF + + + +HI N G+P+G+AF+E + ED A+
Sbjct: 38 IVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILYNKYGKPSGQAFIELEHEEDVGKAL 97
Query: 167 AKDRMTLGSRYIEL 180
+ R R IE+
Sbjct: 98 DQHRHYPRDRLIEV 111
>gi|119574668|gb|EAW54283.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_d
[Homo sapiens]
Length = 149
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
>gi|148700120|gb|EDL32067.1| mCG11326, isoform CRA_d [Mus musculus]
Length = 186
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
>gi|195442063|ref|XP_002068780.1| GK17961 [Drosophila willistoni]
gi|194164865|gb|EDW79766.1| GK17961 [Drosophila willistoni]
Length = 864
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 22/155 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 349 DMALKRHKHHIGARYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 392
Query: 106 HTGILRLRGLPFSAGKDDIMDFFK------DFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ ++DFF + + + DGR TG+AFV FA
Sbjct: 393 AQVIIRMRGLPYDCTAKQVLDFFTTGDSPCSVLDGTEGVLFVKKPDGRATGDAFVLFALE 452
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 453 ADAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 487
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 43/216 (19%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI----- 75
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + +
Sbjct: 431 VLFVKKPDGRATGDAFVLFALEADAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD 490
Query: 76 --------ANEVSDVRGGSPHRSIP--------RAKSHDEGKD------------SAVHT 107
++ + P +P H S
Sbjct: 491 PKTYEANNSHSQPPLIAQLPQMQLPLLPQVGAIAIAGHGHANPLCPIPPPQHLITSGTIK 550
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
+RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++ ++EDS
Sbjct: 551 NCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DSEDSARL 609
Query: 166 MAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
A+ + M G RYIE+F S ++M+ L+ G
Sbjct: 610 CAQRKHNQFMVFGKKFRYIEVFQCSGDDMNMVLNGG 645
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF +++ + + ++ GR GEA + F + E A+ +
Sbjct: 295 IVRARGLPWQSSDQDIAKFFCGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 354
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ +S E+
Sbjct: 355 HKHHIGARYIEVYRASGED 373
>gi|158301007|ref|XP_320791.4| AGAP011722-PA [Anopheles gambiae str. PEST]
gi|157013433|gb|EAA00060.4| AGAP011722-PA [Anopheles gambiae str. PEST]
Length = 861
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 22/154 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ V GG A + + S
Sbjct: 260 DMALKRHKHHIGNRYIEVYRANGEDFLA--------VAGG--------ASNEAQAFLSKG 303
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ ++DFF + + D I DGR TG+AFV F
Sbjct: 304 AQVIIRMRGLPYDCTAKQVLDFFANGENSCNVLDGADGILFVKKPDGRATGDAFVLFEQD 363
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
D+ A++K R ++G RYIELF S+ E+ + +
Sbjct: 364 SDASKALSKHRESIGQRYIELFRSTTAEVQQVCT 397
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 51/230 (22%)
Query: 16 LMDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
++D D +LFV K + + TG+AF + AL ++R+++G+RY+E+FRS E +
Sbjct: 335 VLDGADGILFVKKPDGRATGDAFVLFEQDSDASKALSKHRESIGQRYIELFRSTTAEVQQ 394
Query: 74 AIANEVSDVRGGSPHRSIPR----------------------AKSHDEGK---------- 101
+ VS R + ++ P K+++ +
Sbjct: 395 VCTSLVSVCRVFAQQKNSPTNRLTLLINVVKHPPQVLNRSMDPKTYEPPQPPLIAQLPQM 454
Query: 102 --------DSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGE 151
S V +RLRGLP+ A + I+ F DF + +H+ N+ G+ GE
Sbjct: 455 QLLPQHVITSGVEKNCIRLRGLPYEAKVEHILHFLDDFANHIIYQGVHLVYNAQGQFNGE 514
Query: 152 AFVEFANAEDSKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALSRG 195
AF++ ++E + A+ + M G RYIE+F S E+M+ L+ G
Sbjct: 515 AFIQM-DSETAAYQSAQQKHHKNMMFGKKQRYIEVFQCSGEDMNMVLNGG 563
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T I+R RGLP+ + DI FF+ +++ + + ++ GR GEA V F + E A+
Sbjct: 204 TCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMAL 263
Query: 167 AKDRMTLGSRYIELFPSSHEE 187
+ + +G+RYIE++ ++ E+
Sbjct: 264 KRHKHHIGNRYIEVYRANGED 284
>gi|322801457|gb|EFZ22118.1| hypothetical protein SINV_07549 [Solenopsis invicta]
Length = 425
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 19/143 (13%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEA+ + P ++ A +R+R +MG RY+EVF++KR E + ++
Sbjct: 56 SGEAYVEMDTPEDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVVKRSGLNL--------- 106
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
++A+ G +RLRGLPF K++I FF + + I + + GR TGE
Sbjct: 107 ----------ENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGE 156
Query: 152 AFVEFANAEDSKAAMAKDRMTLG 174
A+V+F N + ++ A+ K + +G
Sbjct: 157 AYVQFVNKDVAERALQKHKEKIG 179
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D+IM FF D +S ++ +H+T + +GRP+GEA+VE ED + A
Sbjct: 14 VVKVRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTTSREGRPSGEAYVEMDTPEDIEKAC 73
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
+DR +G RYIE+F + EM+ + R
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKR 101
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 9/101 (8%)
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
D++GG+ R + + G +S V++ + +RGLPF A + DI DFF+ + ++ I
Sbjct: 313 DMKGGNY-----RGNNDNWGGNSGVYS--IHMRGLPFKATEQDIADFFRP--IEPVNVRI 363
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
+ + GRP+GEA VEFA E++ AM KD+ + RYIELF
Sbjct: 364 ILENGGRPSGEADVEFATHEEALKAMCKDKSHMSHRYIELF 404
>gi|324975474|gb|ADY62662.1| putative RNA-binding protein [Hottentotta judaicus]
Length = 180
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L + + GEA D AL+R++ ++G+RY+EV Y+A + +V
Sbjct: 30 LCLSPQGRRNGEALVRFVNQEHRDMALKRHKHHIGQRYIEV--------YRATGEDFVNV 81
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTG--ILRLRGLPFSAGKDDIMDFFK--DFVL----S 134
GGS H E + G I+R+RGLP+ +++FF D V S
Sbjct: 82 AGGSNH----------EAQTFLSRGGQVIVRMRGLPYDCTPQQVIEFFSTGDIVCQVMDS 131
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
E+ + DGR TG+AFV F E + A+ K R +GSRYIELF S
Sbjct: 132 EEGVLFVRKPDGRATGDAFVLFETEEMAGKALQKHRQVIGSRYIELFRS 180
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 111 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 170
R RGLP+ + DI FF+ + + + ++ GR GEA V F N E A+ + +
Sbjct: 1 RARGLPWQSSDQDIAKFFRGLNIVRGGVALCLSPQGRRNGEALVRFVNQEHRDMALKRHK 60
Query: 171 MTLGSRYIELFPSSHEEM 188
+G RYIE++ ++ E+
Sbjct: 61 HHIGQRYIEVYRATGEDF 78
Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 15 QLMDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
Q+MD + VLFV K + + TG+AF + ALQ++RQ +G RY+E+FRS
Sbjct: 127 QVMDSEEGVLFVRKPDGRATGDAFVLFETEEMAGKALQKHRQVIGSRYIELFRS 180
>gi|149043915|gb|EDL97366.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_d [Rattus norvegicus]
Length = 186
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
>gi|25144418|ref|NP_740877.1| Protein HRPF-1, isoform a [Caenorhabditis elegans]
gi|351061232|emb|CCD68995.1| Protein HRPF-1, isoform a [Caenorhabditis elegans]
Length = 549
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 19 IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE 78
I + +N + +G+A V + AL+++R+++G RY+EVF + + E
Sbjct: 30 IESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDREHLGSRYIEVFPAGGAPTRRGDRGE 89
Query: 79 VSDVRGGSPHR----SIPRAKSHDEG-KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133
D RG H + PR + D G S+ I+RLRGLPFS DI DF +
Sbjct: 90 RGD-RGDRDHYRSRGAPPRDRYSDRGGPRSSGPDSIVRLRGLPFSVTSRDISDFLAPLPI 148
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
D I + RP GEA+V F E + A + +G RYIE+F ++H ++
Sbjct: 149 VRDGILLPDQQRARPGGEAYVCFETMESVQIAKQRHMKNIGHRYIEVFEATHRDL 203
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++ RGLP+ A + ++ DFF + + +S+ I +GR +G+A V F N ED A+ KD
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGI--ESLEIPRR-NGRTSGDAKVVFTNEEDYNNALKKD 63
Query: 170 RMTLGSRYIELFPS 183
R LGSRYIE+FP+
Sbjct: 64 REHLGSRYIEVFPA 77
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD-GRPTGEAFVEFANAEDSKAAMA 167
+LR+RG+PF A + D+ DFF + + + + + RP+G+A V F N +D A+
Sbjct: 472 VLRMRGVPFRASEADVYDFFH--PIRPNQVELLRDHQFQRPSGDARVIFYNRKDYDDALM 529
Query: 168 KDRMTLGSRYIELFP 182
KD+ +G RYIE+ P
Sbjct: 530 KDKQYMGERYIEMIP 544
>gi|449499514|ref|XP_002192774.2| PREDICTED: G-rich sequence factor 1 [Taeniopygia guttata]
Length = 402
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 92/198 (46%), Gaps = 31/198 (15%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE------ 70
+ I D+ F+++ ++ TGEAF P AL R+R+ MG RY+EV+ S++ +
Sbjct: 200 LKITDIAFIYRGDRRTGEAFVQFATPEMAAKALLRHREYMGSRYIEVYVSRKHQMQRHMP 259
Query: 71 YYKAIA---------NEVSDVRG----------GSPHRSIPRAKSH----DEGKDSAVHT 107
Y K + +S+ RG G + S R +S + S+
Sbjct: 260 YSKQLTAYSRARREYESISEDRGWRDTGGSHAEGEINLSRERTESSRNVLESENTSSPPQ 319
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
+ +RG P A DI++FF L I + NS G TGEA V F + ED+ AAMA
Sbjct: 320 HFVHMRGFPSQASAQDIINFFAP--LRPTRILVEYNSGGDATGEADVHFESHEDAVAAMA 377
Query: 168 KDRMTLGSRYIELFPSSH 185
KD + IELF + H
Sbjct: 378 KDGSQMECSAIELFLNEH 395
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 27/168 (16%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV--S 80
++++ + G+A L V AL+++ + MG RYV+VF EV S
Sbjct: 112 FLLNRDGRRRGDALIELESKADVQRALEKHLRYMGPRYVKVF-------------EVHDS 158
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
DV G DE + A+ G++ LRGLPF++ ++DI DFF +++ I
Sbjct: 159 DVEG-------LLQSLRDESQ--AMSDGVVLLRGLPFTSTEEDIADFFSGLKITD--IAF 207
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
D R TGEAFV+FA E + A+ + R +GSRYIE++ S +M
Sbjct: 208 IYRGDRR-TGEAFVQFATPEMAAKALLRHREYMGSRYIEVYVSRKHQM 254
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +G PFS ++D++ FF + E+ IH +N DGR G+A +E + D + A+
Sbjct: 79 LVRAQGFPFSCTEEDVLTFFDSCRIRNGENGIHFLLNRDGRRRGDALIELESKADVQRAL 138
Query: 167 AKDRMTLGSRYIELF 181
K +G RY+++F
Sbjct: 139 EKHLRYMGPRYVKVF 153
>gi|393910110|gb|EJD75743.1| RNA recognition domain-containing protein [Loa loa]
Length = 674
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N + +GE + L V A + +R + RY+EVF E I + V GG
Sbjct: 56 NGRASGECYVELDDQEAVKEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGVIKGSGGD- 114
Query: 88 HRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
DS + ++RLRGLP+SA DDI +FF ++ D++ I G
Sbjct: 115 -------------ADSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVA-DAV-IDKEPGG 159
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
RP+GEAFV A E ++ A+ + + +GSRY+E+F SS +EMD + R
Sbjct: 160 RPSGEAFVRLATKEYAELALERSKNYMGSRYVEVFRSSADEMDNSYYAAR 209
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKD-------------FVLSEDSIHITMNSDGRPTGEAF 153
T +RLRGLPF+A + D+ DF +D F L+ SI T+ S+GR +GE +
Sbjct: 5 TNYIRLRGLPFAAKEQDVRDFLQDISIWFLRYRSFFLFGLNAKSITFTLTSNGRASGECY 64
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
VE + E K A DR + RYIE+F S E+
Sbjct: 65 VELDDQEAVKEAQKLDRNEINGRYIEVFSVSDAEL 99
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 52/195 (26%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE----YYKA--IANEVSD---V 82
+GEAF L + AL+R++ MG RYVEVFRS E YY A I S +
Sbjct: 162 SGEAFVRLATKEYAELALERSKNYMGSRYVEVFRSSADEMDNSYYAARGIPPPTSGPVPL 221
Query: 83 RGGSPHRSI----------------------PRAKSHDEGK-----------------DS 103
RG SP PR +D D
Sbjct: 222 RGISPTLDFRFRDRYADYGRYGGPIRLSSLHPRPSPYDRPYYDRDRYYRCGARYDPEFDE 281
Query: 104 AVHTGILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
A++ ++ +RGLP+S DI +FF+ E I + N + R +G+A V F+ +
Sbjct: 282 AMYDPTVKVFMRGLPYSVTTLDIEEFFRPLNCVE--IKLGYNEERRLSGDALVSFSTMAE 339
Query: 162 SKAAMAKDRMTLGSR 176
++ A+++++ +G+R
Sbjct: 340 AREALSRNKNNMGTR 354
>gi|149602744|ref|XP_001512376.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Ornithorhynchus anatinus]
Length = 332
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 56/89 (62%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G + G +RLRGLPF K++I+ FF + + I +TM+ GR TGEAFV+FA+
Sbjct: 9 GPNDTASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQFASK 68
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
E ++ A+ K + +G RYIE+F SS E+
Sbjct: 69 EIAENALGKHKERIGHRYIEIFKSSRSEI 97
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 175 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 232
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 233 AVAAMSKDKNNMQHRYIELFLNS 255
>gi|340386110|ref|XP_003391551.1| PREDICTED: epithelial splicing regulatory protein 1-like, partial
[Amphimedon queenslandica]
Length = 541
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 28/189 (14%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 85
+ + K +G+AF V V+ AL+++R N+ RY+EVF S +E+ + + G
Sbjct: 304 YPDGKASGDAFAVFSSEAHVEEALKKHRNNLMGRYIEVFHSSLKEFLVVLN------KSG 357
Query: 86 SPHRSIPRAKSHDEGKDSAV-------------------HTGILRLRGLPFSAGKDDIMD 126
+P + A + E ++LRGLP+ A +D++
Sbjct: 358 TPEQLDRFAYLNTESGGGGGGGRGGGGGSGGGASKRGGSEKNCVKLRGLPWEATPEDVIS 417
Query: 127 FFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAE-DSKAAMAKDRMTLGSRYIELFPS 183
FF D + + IH+ +N+ RPTG+ FV+ + + ++AA R +G RYIE+F
Sbjct: 418 FFGDLNRSIEQQGIHMVLNAQSRPTGDCFVQMTSVDAATRAANELHRQNIGRRYIEVFQV 477
Query: 184 SHEEMDEAL 192
S ++ AL
Sbjct: 478 SGNDVTYAL 486
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TGEA VL Q FALQR+R + +RYVEV+ + ++ + D G S
Sbjct: 213 TGEAIVVLEGEDQAQFALQRDRHYLHQRYVEVYEASPDNFF-----QFCDTTGSS----- 262
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD--FVLSE-DSIHITMNSDGRP 148
V T +R++GLP+ A + DIM+FF+ V +E D I I DG+
Sbjct: 263 -----------EKVFT--VRMQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKA 309
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+G+AF F++ + A+ K R L RYIE+F SS +E L++
Sbjct: 310 SGDAFAVFSSEAHVEEALKKHRNNLMGRYIEVFHSSLKEFLVVLNK 355
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+ ++RLRGLPFSA +DI F + + ++N GR TGEA V +
Sbjct: 166 DNVCDGCVVRLRGLPFSADHNDIALFLSGLNIIPGGVVFSINPVGRRTGEAIVVLEGEDQ 225
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
++ A+ +DR L RY+E++ +S
Sbjct: 226 AQFALQRDRHYLHQRYVEVYEAS 248
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 107
A + +RQN+GRRY+EVF+ + A+ + + ++ K V +
Sbjct: 459 ANELHRQNIGRRYIEVFQVSGNDVTYALMDTGGGGSRPGGGHAYYGGGGGNKRKK--VSS 516
Query: 108 GILRLRGLPFSAGKDDIMDFFKDF 131
+++ RGLPF+ + D++DFF DF
Sbjct: 517 AVVKARGLPFNTKEYDLVDFFADF 540
>gi|195171791|ref|XP_002026687.1| GL11864 [Drosophila persimilis]
gi|194111613|gb|EDW33656.1| GL11864 [Drosophila persimilis]
Length = 830
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 22/153 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 353 DMALKRHKHHIGARYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 396
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ +++FF + + + + DGR TG+AFV FAN
Sbjct: 397 AQVIIRMRGLPYDCTAKQVLEFFTTGEAPCHVLDASEGVLFVKKPDGRATGDAFVLFANE 456
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
D+ A+ + R ++G RYIELF S+ E+ + L
Sbjct: 457 GDAPKALGRHRESIGQRYIELFRSTTAEVQQVL 489
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 33/177 (18%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + +
Sbjct: 435 VLFVKKPDGRATGDAFVLFANEGDAPKALGRHRESIGQRYIELFRSTTAEVQQVL----- 489
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
S +RLRGLP+ A + I+ F DF + +
Sbjct: 490 ------------------HLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGV 531
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMD 189
H+ +N+ G+P+GEAF++ ++EDS A+ + M G RYIE+F S ++M+
Sbjct: 532 HMVINAQGQPSGEAFIQM-DSEDSARLCAQRKHNQFMVFGKKFRYIEVFQCSGDDMN 587
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F + E A+ +
Sbjct: 299 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 358
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ +S E+
Sbjct: 359 HKHHIGARYIEVYRASGED 377
>gi|312065923|ref|XP_003136024.1| heterogeneous nuclear ribonucleoprotein H [Loa loa]
Length = 383
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 27/187 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + +GE + V DFAL ++++ +G+RYVE+ + +++ SD
Sbjct: 38 LTKDRDGRASGEGYVVFSSREDYDFALTKDKKYIGKRYVEL---------QQVSSMESDY 88
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
G P A + G++ T I+RL GLP+ K++I+ FF+ +++ I +T
Sbjct: 89 DDGDRRYGGPVADPNLPGRE----TSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTY 144
Query: 143 NS-DGRPTGEAFVEFANAEDSKAAMAKDRMTL-------------GSRYIELFPSSHEEM 188
+ G+P GEAFV F + + + A+AK++ + RY++++PSS+ EM
Sbjct: 145 DRYSGKPKGEAFVAFTDEDSASKALAKNKEYIQHRYCSLTVYHISSLRYVDIYPSSYGEM 204
Query: 189 DEALSRG 195
AL G
Sbjct: 205 LRALDGG 211
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I++ RGLP+S +DD+ +FF + S I +T + DGR +GE +V F++ ED A+ K
Sbjct: 7 IMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKDRDGRASGEGYVVFSSREDYDFALTK 66
Query: 169 DRMTLGSRYIELFPSSHEEMD 189
D+ +G RY+EL S E D
Sbjct: 67 DKKYIGKRYVELQQVSSMESD 87
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+R+RGLP+ A + DI+DFF+ + + +D RP+GEA VEF N D AAM +
Sbjct: 309 CIRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGTD-RPSGEAIVEFRNRADFDAAMQR 367
Query: 169 DRMTLGSRYIELFP 182
+R +GSRY+EL P
Sbjct: 368 NRNYMGSRYVELIP 381
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 20 VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 64
+DVL+ + ++ +GEA D A+QRNR MG RYVE+
Sbjct: 336 IDVLYEYGTDRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 380
>gi|18027358|gb|AAL55761.1|AF289577_1 unknown [Homo sapiens]
gi|119603621|gb|EAW83215.1| RNA binding motif protein 35B, isoform CRA_b [Homo sapiens]
Length = 303
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 56 MGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 112
+G+RY+E+FRS E + + A+ +P IP + G+D +RL
Sbjct: 2 LGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD------CVRL 55
Query: 113 RGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-D 169
RGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE + AA +
Sbjct: 56 RGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCH 115
Query: 170 RMTLGSRYIELFPSSHEEMDEALSRG 195
+ + RY+E+ P S EEM L G
Sbjct: 116 KKVMKERYVEVVPCSTEEMSRVLMGG 141
>gi|328707990|ref|XP_001948909.2| PREDICTED: RNA-binding protein fusilli-like [Acyrthosiphon pisum]
Length = 571
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 22/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D A +R+ ++G RY+EV+++ +++ S+V + +H
Sbjct: 43 DMATKRHNHHIGSRYIEVYKANGEDFINVAGGNSSEVE------TFLAKGAH-------- 88
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
I+R+RGLP+ D++ FF++ + E+ + DGR TG AFV FA+
Sbjct: 89 --AIVRMRGLPYYCTAKDVITFFENGEQTSSVMYGEEGVLFVKKPDGRATGYAFVLFADE 146
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+D+ A++K R +G+RYIEL + E+ + L+RG
Sbjct: 147 DDACKALSKHRDLMGTRYIELIRCTKAEVQQFLNRG 182
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK------- 73
VLFV K + + TG AF + AL ++R MG RY+E+ R + E +
Sbjct: 125 VLFVKKPDGRATGYAFVLFADEDDACKALSKHRDLMGTRYIELIRCTKAEVQQFLNRGMD 184
Query: 74 -AIANEVSDVRGG-------------SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLP 116
++ + SD G SP +P S + +RLRGLP
Sbjct: 185 QSVRSTASDSIGNITIPVTTTAGVNNSPTALLGHVPLLPLPQHVITSGIRKDCIRLRGLP 244
Query: 117 FSAGKDDIMDFF----KDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAKDR- 170
+ A + I+ F K+ V +HI NS G +GEAF++ N ++A MAK+
Sbjct: 245 YEANVEHILKFLGEHSKNIVF--HGVHIVYNSVGHASGEAFIQMNNEGSAAQAVMAKNHK 302
Query: 171 -MTLGS--RYIELFPSSHEEMDEALSRG 195
++ G RYI+LF S E+M L+ G
Sbjct: 303 YISFGKKRRYIKLFQCSGEDMHLVLTGG 330
Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 126 DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185
D K ++ + + +++ GR GEA V F N E A + +GSRYIE++ ++
Sbjct: 6 DHEKKHIICVGGVTLCLSAHGRCNGEAVVRFVNQEHRDMATKRHNHHIGSRYIEVYKANG 65
Query: 186 EE 187
E+
Sbjct: 66 ED 67
>gi|327277960|ref|XP_003223731.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Anolis carolinensis]
Length = 326
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
A H+ DS+ G +RLRGLPF K++I+ FF+ + + I +T++ GR TGEAF
Sbjct: 4 AGKHNGPNDSSS-DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAF 62
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 63 VQFASKEIAEKALGKHKERIGHRYIEIFKSSKSEI 97
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+K
Sbjct: 182 FVHMRGLPFRATENDIANFFSP--LTPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSK 239
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RYIELF +S
Sbjct: 240 DKNHMQHRYIELFLNS 255
>gi|390475715|ref|XP_003735008.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Callithrix jacchus]
Length = 421
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%)
Query: 75 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 134
+ ++VS+V+G I + G +RLRGLPF K++I+ FF+ +
Sbjct: 73 LEDQVSEVKGAFKSNGIEMDWVMKHNGPNDARDGTVRLRGLPFGCSKEEIVQFFQGLEIV 132
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
+ I + M+ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E++
Sbjct: 133 PNGITLMMDYQGRSTGEAFVQFASKEITENALGKHKERIGHRYIEIFRSSRNEIE 187
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 264 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 321
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + +YIELF +S
Sbjct: 322 AVAAMSKDKNNMQHQYIELFLNS 344
Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L + + TGEAF + AL ++++ +G RY+E+FRS R E
Sbjct: 137 TLMMDYQGRSTGEAFVQFASKEITENALGKHKERIGHRYIEIFRSSRNE 185
>gi|47211266|emb|CAF91568.1| unnamed protein product [Tetraodon nigroviridis]
Length = 823
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 17/180 (9%)
Query: 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK-----AIANEVSDVRG 84
+ TG+A P + A++R MG+R++E+ Q++ + A++ S
Sbjct: 265 RHTGKASVKFFSPQESFEAVKRGGGMMGQRFIEISPGSEQQWASISISDSTASQASHASN 324
Query: 85 GSPHRSIP-----RAKSHDEGKDSAVHTG-------ILRLRGLPFSAGKDDIMDFFKDFV 132
S P R + EG+D + + L+GLP+ A K I +FF +
Sbjct: 325 KPSVESQPPQQHCRNNAGAEGRDQRGRSRSPHRQEFCVYLKGLPYEADKKQIKEFFSNLA 384
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+ EDSI+I +GR TGE F+EF +D KAA+ +GSR+I++ P S + M E +
Sbjct: 385 IIEDSIYIAYGPNGRATGEGFLEFKTEQDHKAALGAHMQYMGSRFIQVHPISRKGMLEKI 444
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P A ++ + +A T +++L+ +PF+ D+IMDFF + + S+ + + G PTGE
Sbjct: 732 PAATANPTSQCAAGPT-VVKLQNMPFTVTVDEIMDFFYGYQVVPGSVCLQFSEKGLPTGE 790
Query: 152 AFVEFANAEDSKAAM--AKDRMTLGSRYIEL 180
A V F N E++ AA+ DR +G+R +++
Sbjct: 791 AMVAFQNHEEATAAVLDLNDR-PIGARKVKI 820
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
++ + L SS EM + R
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMQNMIDLSR 87
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ L+ LPF+ + DI FF+ L D + ++ GR TG+A V+F + ++S A+ +
Sbjct: 230 VHLQNLPFTCTEMDIRHFFRG--LGVDGVRFLKDAQGRHTGKASVKFFSPQESFEAVKRG 287
Query: 170 RMTLGSRYIELFPSSHEEM 188
+G R+IE+ P S ++
Sbjct: 288 GGMMGQRFIEISPGSEQQW 306
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 16 LMDIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
L I D +++ N + TGE F AL + Q MG R+++V R K
Sbjct: 383 LAIIEDSIYIAYGPNGRATGEGFLEFKTEQDHKAALGAHMQYMGSRFIQVHPISR----K 438
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKD---SAVHTGILRLRGLPFSAGKDDIMDFFKD 130
+ ++ +R R SH GK S + + +P++ K D+ F +
Sbjct: 439 GMLEKIDAIRK--------REASHGGGKSQDGSKNPRNCVHITNIPYNISKKDVRAFLEG 490
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
L ED++ + +S G G+A + ED++ A R L R
Sbjct: 491 VGLYEDTLKVLTDSHGNGLGQAIFQLRTEEDARKAERLHRQKLNGR 536
>gi|327277958|ref|XP_003223730.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Anolis carolinensis]
Length = 341
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
A H+ DS+ G +RLRGLPF K++I+ FF+ + + I +T++ GR TGEAF
Sbjct: 4 AGKHNGPNDSSS-DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAF 62
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
V+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 63 VQFASKEIAEKALGKHKERIGHRYIEIFKSSKSEI 97
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+K
Sbjct: 197 FVHMRGLPFRATENDIANFFSP--LTPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSK 254
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RYIELF +S
Sbjct: 255 DKNHMQHRYIELFLNS 270
>gi|157883792|pdb|2HGM|A Chain A, Nmr Structure Of The Second Qrrm Domain Of Human Hnrnp F
gi|297787487|pdb|2KG0|A Chain A, Structure Of The Second Qrrm Domain Of Hnrnp F In Complex
With A Agggau G-Tract Rna
Length = 126
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 85 GSPHRSIPRAKSHDEGKDSA--VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
GS S+ + G +SA + G +RLRGLPF K++I+ FF + + I + +
Sbjct: 18 GSHMASMTGGQQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 77
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 78 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 123
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L V K TGEAF + AL ++++ +G RY+EVF+S ++E
Sbjct: 74 TLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 122
>gi|395741721|ref|XP_003780739.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H3 [Pongo abelii]
Length = 346
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L++ +HI + +DGR TGEA VEF ED
Sbjct: 197 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNQYEVHIDIGADGRATGEADVEFVTHED 254
Query: 162 SKAAM-AKDRMTLGSRYIELFPSS 184
+ AAM + ++ + RYIELF +S
Sbjct: 255 AVAAMFXRIKINMQHRYIELFLNS 278
Score = 35.8 bits (81), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL ++++ +G RY+E+FRS R E
Sbjct: 57 TGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSE 95
>gi|312094676|ref|XP_003148104.1| hypothetical protein LOAG_12543 [Loa loa]
Length = 304
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 15/172 (8%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84
+ N + +GE + L V A + +R + RY+EVF E I + V G
Sbjct: 53 LTSNGRASGECYVELDDQEAVKEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGVIKGSG 112
Query: 85 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 144
G + ++RLRGLP+SA DDI +FF ++ D++ I
Sbjct: 113 G-------------DADSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVA-DAV-IDKEP 157
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
GRP+GEAFV A E ++ A+ + + +GSRY+E+F SS +EMD + R
Sbjct: 158 GGRPSGEAFVRLATKEYAELALERSKNYMGSRYVEVFRSSADEMDNSYYAAR 209
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKD-------------FVLSEDSIHITMNSDGRPTGEAF 153
T +RLRGLPF+A + D+ DF +D F L+ SI T+ S+GR +GE +
Sbjct: 5 TNYIRLRGLPFAAKEQDVRDFLQDISIWFLRYRSFFLFGLNAKSITFTLTSNGRASGECY 64
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
VE + E K A DR + RYIE+F S E+
Sbjct: 65 VELDDQEAVKEAQKLDRNEINGRYIEVFSVSDAEL 99
>gi|226487870|emb|CAX75600.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 278
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 20/167 (11%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N + GEAF L + A+ + ++MGRRY+EVF S + E+++ G P
Sbjct: 42 NGRSNGEAFIELDSKDDKEKAMAHHNEHMGRRYIEVFDS--------CSEELNNAMGSRP 93
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
S P + H ++RLRGLP+ K +I FF ++ + I + ++ GR
Sbjct: 94 FSS-PNRREH-----------VVRLRGLPYDTEKKEIYAFFNGLEIAPNGIGLLVDHMGR 141
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
TGEA+V+F ++E A K +G RYIE+F S+ E + + R
Sbjct: 142 CTGEAYVQFTSSESLARAKEKHMEKIGHRYIEIFESTMLEANITIQR 188
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLPFSA DDI++FFKD + + I+ +GR GEAF+E + +D + AM
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALS 193
A +G RYIE+F S EE++ A+
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNAMG 90
>gi|449269002|gb|EMC79814.1| Heterogeneous nuclear ribonucleoprotein H3 [Columba livia]
Length = 343
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
H+ D+ ++RLRGLPF K++I+ FF+ + + I +T++ GR TGEAFV+F
Sbjct: 7 HNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQF 66
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 67 ASKEIAENALGKHKERIGHRYIEIFKSSKSEI 98
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+KD
Sbjct: 201 VHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 258
Query: 170 RMTLGSRYIELFPSS 184
+ + RYIELF +S
Sbjct: 259 KNHMQHRYIELFLNS 273
>gi|118381178|ref|XP_001023750.1| hypothetical protein TTHERM_00245200 [Tetrahymena thermophila]
gi|89305517|gb|EAS03505.1| hypothetical protein TTHERM_00245200 [Tetrahymena thermophila
SB210]
Length = 570
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 4/174 (2%)
Query: 21 DVLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV 79
D+ F++ + KF+GEA+ + L AL N + R+VE+F + E+ +A ++
Sbjct: 298 DIAFLYDSEGKFSGEAYVRVYSQLDKQEALCYNLNKVEGRFVEIFETTENEFNRAKISQF 357
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
+ R +P D K G++R+RGLP+S ++DI FFK + + I
Sbjct: 358 PEKRNQDDE--LPNETQFDLNKIVTEGAGVVRIRGLPYSCTEEDIKKFFKGLTILQGGIK 415
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+ GRP GE FV F N +D+ A+ + +R+IE+F ++ +E + ++
Sbjct: 416 RAI-LGGRPGGECFVIFQNKDDAHKALNFHMEKIHNRFIEVFLATVKEFENYMA 468
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 33 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD---VRGGSPHR 89
GE F + AL + + + R++EVF + +E+ +A+ + V
Sbjct: 425 GECFVIFQNKDDAHKALNFHMEKIHNRFIEVFLATVKEFENYMAHNFVNSAPVYSKDNMP 484
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 149
+IP+ K L + G+PFS K I++FFK F ++E IH+ + G+ +
Sbjct: 485 NIPQEK----------RKSTLMVMGMPFSVTKQKILEFFKGFDINEREIHLLCSHTGKFS 534
Query: 150 GEAFVEFANA-EDSKAAMAKDRMTLGSRYIELF 181
G A V F + E +A K+ + +RY+ELF
Sbjct: 535 GSALVTFEDELEAQRALKTKNFSYIENRYLELF 567
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 38 VLGYPLQVDFALQ--RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAK 95
V +P ++ + Q + Q+ RY++ K + Y VRG SP ++
Sbjct: 217 VFNHPKLINNSYQVVLDNQDSKTRYIQSREKKSKNNY---------VRGRSPEPFKNLSQ 267
Query: 96 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 155
H +R+RGLP+SA + +I + K+ + ++ I +S+G+ +GEA+V
Sbjct: 268 QH-----------FIRIRGLPYSAREPEIYELLKNIRIYKEDIAFLYDSEGKFSGEAYVR 316
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
+ D + A+ + + R++E+F ++ E + A
Sbjct: 317 VYSQLDKQEALCYNLNKVEGRFVEIFETTENEFNRA 352
>gi|224052106|ref|XP_002190890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Taeniopygia guttata]
Length = 342
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
H+ D+ ++RLRGLPF K++I+ FF+ + + I +T++ GR TGEAFV+F
Sbjct: 7 HNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQF 66
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 67 ASKEIAENALGKHKERIGHRYIEIFKSSKSEI 98
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+KD
Sbjct: 200 VHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 257
Query: 170 RMTLGSRYIELFPSS 184
+ + RYIELF +S
Sbjct: 258 KNHMQHRYIELFLNS 272
>gi|224052108|ref|XP_002190951.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Taeniopygia guttata]
Length = 327
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
H+ D+ ++RLRGLPF K++I+ FF+ + + I +T++ GR TGEAFV+F
Sbjct: 7 HNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQF 66
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 67 ASKEIAENALGKHKERIGHRYIEIFKSSKSEI 98
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+KD
Sbjct: 185 VHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 242
Query: 170 RMTLGSRYIELFPSS 184
+ + RYIELF +S
Sbjct: 243 KNHMQHRYIELFLNS 257
>gi|60302824|ref|NP_001012610.1| heterogeneous nuclear ribonucleoprotein H3 [Gallus gallus]
gi|60099043|emb|CAH65352.1| hypothetical protein RCJMB04_21b18 [Gallus gallus]
Length = 342
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
H+ D+ ++RLRGLPF K++I+ FF+ + + I +T++ GR TGEAFV+F
Sbjct: 7 HNGPTDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQF 66
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 67 ASKEIAENALGKHKERIGHRYIEIFKSSKSEI 98
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+KD
Sbjct: 200 VHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 257
Query: 170 RMTLGSRYIELFPSS 184
+ + RYIELF +S
Sbjct: 258 KNHMQHRYIELFLNS 272
>gi|344275081|ref|XP_003409342.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Loxodonta africana]
Length = 350
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 190 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 247
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 248 AVAAMSKDKNNMQHRYIELFLNS 270
>gi|431904171|gb|ELK09593.1| Heterogeneous nuclear ribonucleoprotein H3 [Pteropus alecto]
Length = 405
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 75 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 134
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 135 KHKERIGHRYIEIFRSSRSEI 155
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 248 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 305
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 306 AVAAMSKDKNNMQHRYIELFLNS 328
Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 15 QLMDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
Q ++IV L + + TGEAF + AL ++++ +G RY+E+FRS R E
Sbjct: 96 QGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSE 154
>gi|344275083|ref|XP_003409343.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Loxodonta africana]
Length = 335
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 175 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 232
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 233 AVAAMSKDKNNMQHRYIELFLNS 255
>gi|62898443|dbj|BAD97161.1| heterogeneous nuclear ribonucleoprotein H3 isoform a variant [Homo
sapiens]
Length = 346
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYI+LF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIKLFLNS 269
>gi|14141157|ref|NP_036339.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Homo sapiens]
gi|343780936|ref|NP_001230484.1| heterogeneous nuclear ribonucleoprotein H3 [Sus scrofa]
gi|388452508|ref|NP_001253678.1| heterogeneous nuclear ribonucleoprotein H3 [Macaca mulatta]
gi|73952781|ref|XP_536369.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Canis lupus familiaris]
gi|149689928|ref|XP_001503654.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Equus caballus]
gi|291404271|ref|XP_002718501.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Oryctolagus cuniculus]
gi|296220546|ref|XP_002756352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Callithrix jacchus]
gi|332218213|ref|XP_003258253.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Nomascus leucogenys]
gi|332834180|ref|XP_521495.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Pan troglodytes]
gi|397520483|ref|XP_003830346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Pan paniscus]
gi|402880658|ref|XP_003903915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Papio anubis]
gi|403273867|ref|XP_003928719.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Saimiri boliviensis boliviensis]
gi|410975227|ref|XP_003994035.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Felis catus]
gi|410975229|ref|XP_003994036.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Felis catus]
gi|426364932|ref|XP_004049545.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Gorilla gorilla gorilla]
gi|23503095|sp|P31942.2|HNRH3_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H3;
Short=hnRNP H3; AltName: Full=Heterogeneous nuclear
ribonucleoprotein 2H9; Short=hnRNP 2H9
gi|5542020|gb|AAD45179.1|L32610_1 ribonucleoprotein [Homo sapiens]
gi|7739436|gb|AAF68843.1| hnRNP 2H9 [Homo sapiens]
gi|119574665|gb|EAW54280.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_a
[Homo sapiens]
gi|119574670|gb|EAW54285.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_a
[Homo sapiens]
gi|351702487|gb|EHB05406.1| Heterogeneous nuclear ribonucleoprotein H3 [Heterocephalus glaber]
gi|355562560|gb|EHH19154.1| hypothetical protein EGK_19802 [Macaca mulatta]
gi|355782891|gb|EHH64812.1| hypothetical protein EGM_18125 [Macaca fascicularis]
gi|380784275|gb|AFE64013.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Macaca
mulatta]
gi|380812322|gb|AFE78035.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Macaca
mulatta]
gi|410221428|gb|JAA07933.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410221430|gb|JAA07934.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258984|gb|JAA17458.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258988|gb|JAA17460.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302442|gb|JAA29821.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302446|gb|JAA29823.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342067|gb|JAA39980.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342069|gb|JAA39981.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|432106705|gb|ELK32357.1| Heterogeneous nuclear ribonucleoprotein H3 [Myotis davidii]
gi|440895821|gb|ELR47915.1| Heterogeneous nuclear ribonucleoprotein H3 [Bos grunniens mutus]
Length = 346
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
>gi|395820622|ref|XP_003783662.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Otolemur garnettii]
Length = 346
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
>gi|354477666|ref|XP_003501040.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Cricetulus griseus]
Length = 340
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
>gi|148700119|gb|EDL32066.1| mCG11326, isoform CRA_c [Mus musculus]
gi|149043913|gb|EDL97364.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 314
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTL 173
+ AAM+KD+ +
Sbjct: 247 AVAAMSKDKNNM 258
>gi|301755896|ref|XP_002913784.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Ailuropoda melanoleuca]
gi|281346969|gb|EFB22553.1| hypothetical protein PANDA_001623 [Ailuropoda melanoleuca]
Length = 346
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
>gi|119637823|ref|NP_001073293.1| heterogeneous nuclear ribonucleoprotein H3 [Mus musculus]
gi|157818423|ref|NP_001102002.1| heterogeneous nuclear ribonucleoprotein H3 [Rattus norvegicus]
gi|148700117|gb|EDL32064.1| mCG11326, isoform CRA_a [Mus musculus]
gi|149043914|gb|EDL97365.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_c [Rattus norvegicus]
gi|182887935|gb|AAI60206.1| Heterogeneous nuclear ribonucleoprotein H3 [synthetic construct]
Length = 346
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
>gi|330864791|ref|NP_001193508.1| heterogeneous nuclear ribonucleoprotein H3 [Bos taurus]
Length = 317
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM++D+ + RYIELF +S
Sbjct: 247 AVAAMSRDKNNMQHRYIELFLNS 269
>gi|255077464|ref|XP_002502372.1| predicted protein [Micromonas sp. RCC299]
gi|226517637|gb|ACO63630.1| predicted protein [Micromonas sp. RCC299]
Length = 202
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA--NAEDSKA 164
GILRLR +P+ A K D+++FF ++ED + I ++++ TGEAFVEF+ +A S+A
Sbjct: 109 CGILRLRSVPYEATKTDVVNFFYGMGVTEDKVKIVLDANSASTGEAFVEFSGDDANISQA 168
Query: 165 AMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
M KDR LGSR +E+F SS EE+ GR
Sbjct: 169 LM-KDRAVLGSRCVEMFRSSLEEVQRMAMMGR 199
>gi|428185861|gb|EKX54712.1| hypothetical protein GUITHDRAFT_57099, partial [Guillardia theta
CCMP2712]
Length = 203
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
++ + TGEAF + + + AL +R++MG RYVEVF+S + + + A V V
Sbjct: 36 RDGRPTGEAFVIFERDDEGEKALSLDRKHMGTRYVEVFKSNKPDLVRLCAGCVPAVAPSM 95
Query: 87 PHRSIPRAKSHDEGKDS------AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
P P H A ++++RGLP+SA + D+ DFF + +++
Sbjct: 96 PPSLPPSLPPHPHPHSHPMPGSLAAKDLVVKVRGLPYSAKEADVFDFFCSSNVRPSGVNL 155
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
N+ G +G+A+VE + E+ A+A R G RY+E+F +S E+
Sbjct: 156 IQNARGESSGDAYVELGSEEEVMRALALHRSNFGHRYLEIFRTSRAEV 203
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R+RGLPFS ++DI +FF ++ I T + DGRPTGEAFV F ++ + A++
Sbjct: 1 IVRMRGLPFSVREEDIREFFSGLLVRPHGIFFTSSRDGRPTGEAFVIFERDDEGEKALSL 60
Query: 169 DRMTLGSRYIELFPSSHEEM 188
DR +G+RY+E+F S+ ++
Sbjct: 61 DRKHMGTRYVEVFKSNKPDL 80
>gi|14141159|ref|NP_067676.2| heterogeneous nuclear ribonucleoprotein H3 isoform b [Homo sapiens]
gi|291404273|ref|XP_002718502.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Oryctolagus cuniculus]
gi|296220548|ref|XP_002756353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Callithrix jacchus]
gi|332218215|ref|XP_003258254.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Nomascus leucogenys]
gi|332834182|ref|XP_003312632.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Pan troglodytes]
gi|338716820|ref|XP_003363523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Equus caballus]
gi|345798943|ref|XP_860394.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 3
[Canis lupus familiaris]
gi|397520485|ref|XP_003830347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Pan paniscus]
gi|402880660|ref|XP_003903916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Papio anubis]
gi|403273869|ref|XP_003928720.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Saimiri boliviensis boliviensis]
gi|410975231|ref|XP_003994037.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 3
[Felis catus]
gi|426364934|ref|XP_004049546.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Gorilla gorilla gorilla]
gi|7739443|gb|AAF68849.1|AF132361_1 hnRNP 2H9A [Homo sapiens]
gi|7739440|gb|AAF68847.1| hnRNP 2H9A [Homo sapiens]
gi|24981041|gb|AAH39824.1| Heterogeneous nuclear ribonucleoprotein H3 (2H9) [Homo sapiens]
gi|119574667|gb|EAW54282.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_c
[Homo sapiens]
gi|158256526|dbj|BAF84236.1| unnamed protein product [Homo sapiens]
gi|261861160|dbj|BAI47102.1| heterogeneous nuclear ribonucleoprotein H3 [synthetic construct]
gi|296472170|tpg|DAA14285.1| TPA: heterogeneous nuclear ribonucleoprotein H3 (2H9) [Bos taurus]
gi|380812320|gb|AFE78034.1| heterogeneous nuclear ribonucleoprotein H3 isoform b [Macaca
mulatta]
gi|410221432|gb|JAA07935.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258986|gb|JAA17459.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302444|gb|JAA29822.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342071|gb|JAA39982.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
Length = 331
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 174 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 231
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 232 AVAAMSKDKNNMQHRYIELFLNS 254
>gi|395820624|ref|XP_003783663.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Otolemur garnettii]
Length = 331
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 174 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 231
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 232 AVAAMSKDKNNMQHRYIELFLNS 254
>gi|354477668|ref|XP_003501041.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Cricetulus griseus]
gi|344247616|gb|EGW03720.1| Heterogeneous nuclear ribonucleoprotein H3 [Cricetulus griseus]
Length = 325
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 174 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 231
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 232 AVAAMSKDKNNMQHRYIELFLNS 254
>gi|392355325|ref|XP_003752006.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Rattus
norvegicus]
gi|148700118|gb|EDL32065.1| mCG11326, isoform CRA_b [Mus musculus]
gi|149043912|gb|EDL97363.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 331
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 174 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 231
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 232 AVAAMSKDKNNMQHRYIELFLNS 254
>gi|426255654|ref|XP_004021463.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Ovis aries]
Length = 331
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASMEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 174 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 231
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 232 AVAAMSKDKNNMQHRYIELFLNS 254
>gi|426255652|ref|XP_004021462.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Ovis aries]
Length = 346
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASMEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
>gi|449280564|gb|EMC87832.1| G-rich sequence factor 1, partial [Columba livia]
Length = 331
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 90/204 (44%), Gaps = 34/204 (16%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY----- 71
+ I D+ FV++ + TGEAF P AL R+R+ MG RY+EV+ S++ +
Sbjct: 130 LKITDIAFVYRGERRTGEAFVQFAAPDMAAKALSRHREYMGNRYIEVYVSRKHQMQRHVP 189
Query: 72 -------YKAIANE---VSDVRGGSPHRSI---------------PRAKSHDEGKDSAVH 106
Y + E VS+ R S S P S E S +H
Sbjct: 190 YHRQLLTYPKVRKEHESVSEERRWSDTASSDAEGENQVCREQTERPGHISESESVSSPLH 249
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+ +RG P DI++FF L I + N G TGEA V F + ED+ AAM
Sbjct: 250 --FVHMRGFPAQTSAQDIINFFAP--LKPTRIMVEYNCHGDATGEADVHFESREDAVAAM 305
Query: 167 AKDRMTLGSRYIELFPSSHEEMDE 190
AK+ L IELF + H + ++
Sbjct: 306 AKEGSRLQCSAIELFLNGHPKANQ 329
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 23/166 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ + G+A L V AL+++ + MG RYV+VF EV D
Sbjct: 42 FLLNRDGRRRGDALIELESKADVQRALEKHLRYMGPRYVKVF-------------EVHDS 88
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
S RS+ DE + A++ G++ LRGLPFS+ +DDI DFF +++ + +
Sbjct: 89 DVESLLRSL-----RDESQ--AINDGVVMLRGLPFSSTEDDIADFFSGLKITDIAF---V 138
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
R TGEAFV+FA + + A+++ R +G+RYIE++ S +M
Sbjct: 139 YRGERRTGEAFVQFAAPDMAAKALSRHREYMGNRYIEVYVSRKHQM 184
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +G PFS ++D++ FF + E+ IH +N DGR G+A +E + D + A+
Sbjct: 9 LIRAQGFPFSCTEEDVLTFFDSCRIRNGENGIHFLLNRDGRRRGDALIELESKADVQRAL 68
Query: 167 AKDRMTLGSRYIELF 181
K +G RY+++F
Sbjct: 69 EKHLRYMGPRYVKVF 83
>gi|326923399|ref|XP_003207924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Meleagris gallopavo]
Length = 323
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
H+ D+ ++RLRGLPF K++I+ FF+ + + I +T++ GR TGEAFV+F
Sbjct: 7 HNGPTDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQF 66
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 67 ASKEIAENALGKHKERIGHRYIEIFKSSKSEI 98
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
PF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+KD+ +
Sbjct: 187 PFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNHMQH 244
Query: 176 RYIELFPSS 184
RYIELF +S
Sbjct: 245 RYIELFLNS 253
>gi|348575706|ref|XP_003473629.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Cavia
porcellus]
Length = 372
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 42 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 101
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 102 KHKERIGHRYIEIFRSSRSEI 122
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 215 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 272
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 273 AVAAMSKDKNNMQHRYIELFLNS 295
>gi|226487872|emb|CAX75601.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 153
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLPFSA DDI++FFKD + + I+ +GR GEAF+E + +D + AM
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
A +G RYIE+F S EE++ A+
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNAM 89
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N + GEAF L + A+ + ++MGRRY+EVF S + E+++ G P
Sbjct: 42 NGRSNGEAFIELDSKDDKEKAMAHHNEHMGRRYIEVFDS--------CSEELNNAMGSRP 93
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 129
S P + H ++RLRGLP+ K +I FF+
Sbjct: 94 FSS-PNRREH-----------VVRLRGLPYDTEKKEIYAFFQ 123
>gi|428180581|gb|EKX49448.1| hypothetical protein GUITHDRAFT_104977 [Guillardia theta CCMP2712]
Length = 443
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 165
T ++LRGLP+ A D+++FFK + E+SI +NS+GRP+GEA+V F ED+ KA
Sbjct: 354 TTKVKLRGLPYGATTADVLNFFKGLGVLEESITFGINSEGRPSGEAWVSFNRIEDARKAV 413
Query: 166 MAKDRMTLGSRYIELF 181
KDR +G RY+ELF
Sbjct: 414 REKDRHHMGDRYVELF 429
>gi|74202595|dbj|BAE24862.1| unnamed protein product [Mus musculus]
Length = 171
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 20/148 (13%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
V F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 VRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHT-- 100
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
P+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 101 -----GPN-------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKK 171
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
>gi|428180638|gb|EKX49505.1| hypothetical protein GUITHDRAFT_105029 [Guillardia theta CCMP2712]
Length = 374
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ--NMGRRYVEVFRSKRQEYYKAIANEVS 80
L NNK TG ++ V + ++Q ++G V +S++ + + S
Sbjct: 201 LSSGSNNKVTGGKPPIVATSNGVQQSTSESQQEASIGPSAVSGNKSEQSLKKQGETAKRS 260
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ RG +S A S G D + ++LRGLPF A D+M F K + E SI
Sbjct: 261 ETRGWE-TQSKALAASRSSGVD-GKYPATVKLRGLPFGATSLDVMGFLKGYNAVESSIRF 318
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAM-AKDRMTLGSRYIELF 181
N DGRP+GEA+V F E++K + KDR LG+RY+ELF
Sbjct: 319 GNNQDGRPSGEAWVSFNRLEEAKRVVREKDRHHLGNRYVELF 360
>gi|348520489|ref|XP_003447760.1| PREDICTED: hypothetical protein LOC100697955 [Oreochromis
niloticus]
Length = 1432
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 26/182 (14%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG A P A++R MG+R++E+ +++ A+ + G +PH S
Sbjct: 344 TGRAMVKFFSPQDSFEAVKRGGGMMGQRFIEITPGSERQW----ASLNDGLAGHAPHNSS 399
Query: 92 PRAKSHDEGKD-----SAVHTG----------------ILRLRGLPFSAGKDDIMDFFKD 130
++ S +E +D V G + L+GLP+ A K I +FFK+
Sbjct: 400 -KSNSINESQDLQHRRGNVEAGGRDQRARSRSPHRQEFCVYLKGLPYEADKKQIKEFFKN 458
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ EDSI+I +GR TGE F+EF + +D K A+ +GSR+I++ P S + M E
Sbjct: 459 LDIVEDSIYIAYGPNGRATGEGFLEFKSEQDYKGALGAHMQYMGSRFIQVHPISRKGMLE 518
Query: 191 AL 192
+
Sbjct: 519 KI 520
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
++ P ++ + A I++L+ +PF+ D+IMDFF + + S+ + N G
Sbjct: 804 NQPAPGGSNNPSSQRGAAGPTIVKLQNMPFTVTVDEIMDFFYGYQVLPGSVCLQFNEKGL 863
Query: 148 PTGEAFVEFANAEDSKAA-MAKDRMTLGSRYIEL 180
PTGEA V F + E++ AA M + +G+R +++
Sbjct: 864 PTGEAMVAFQSHEEATAAVMDLNDRPIGARKVKI 897
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
L+ LPFS + ++ +FF+ L D++ + + GRPTG A V+F + +DS A+ +
Sbjct: 309 LQNLPFSCSEVEVREFFRG--LGVDAVRLMRDGQGRPTGRAMVKFFSPQDSFEAVKRGGG 366
Query: 172 TLGSRYIELFPSSHEEM 188
+G R+IE+ P S +
Sbjct: 367 MMGQRFIEITPGSERQW 383
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
++ + L SS EM + R
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMQNMIELSR 87
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N + TGE F AL + Q MG R+++V R K
Sbjct: 459 LDIVEDSIYIAYGPNGRATGEGFLEFKSEQDYKGALGAHMQYMGSRFIQVHPISR----K 514
Query: 74 AIANEVSDVRGGSPHRSIPRAKSHDEGKDS---AVHTGILRLRGLPFSAGKDDIMDFFKD 130
+ ++ +R R + +GK+ + +P++ K D+ F +
Sbjct: 515 GMLEKIDAIRK--------REAAQGDGKNQDGLKTPRNCAHITNIPYNISKKDVRAFLEG 566
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
+ ED++ + +S G G+A + ED++ A R L R
Sbjct: 567 VGIYEDTLKVLTDSHGNGLGQAIFQLRTEEDARKAERLHRQKLNGR 612
>gi|56753603|gb|AAW25004.1| SJCHGC02919 protein [Schistosoma japonicum]
gi|226487876|emb|CAX75603.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 137
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLPFSA DDI++FFKD + + I+ +GR GEAF+E + +D + AM
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
A +G RYIE+F S EE++ A+
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNAM 89
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N + GEAF L + A+ + ++MGRRY+EVF S + E+++ G P
Sbjct: 42 NGRSNGEAFIELDSKDDKEKAMAHHNEHMGRRYIEVFDS--------CSEELNNAMGSRP 93
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
S P + H ++RLRGLP+ K +I FF D
Sbjct: 94 FSS-PNRREH-----------VVRLRGLPYDTEKKEIYAFFND 124
>gi|194376648|dbj|BAG57470.1| unnamed protein product [Homo sapiens]
Length = 404
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
KDR T+G RY+E+F S+ EMD
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMD 94
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 233 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 290
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 291 ATHEDAVAAMAKDKANMQHRYVELFLNS 318
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 43 IRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVE 92
>gi|18266700|ref|NP_543172.1| heterogeneous nuclear ribonucleoprotein H [Rattus norvegicus]
gi|18104446|gb|AAL59557.1| Ratsg1 [Rattus norvegicus]
Length = 372
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 56 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
MG RYVEVF+S E + + + S D D G +RLRGL
Sbjct: 1 MGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGL 41
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
PF +++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGH 101
Query: 176 RYIELFPSSHEEM 188
RYIE+F SS E+
Sbjct: 102 RYIEIFKSSRAEV 114
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI DGR TGEA VEFA ED+ AAM+K
Sbjct: 213 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSK 270
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 271 DKANMQHRYVELFLNS 286
>gi|268529124|ref|XP_002629688.1| C. briggsae CBR-SYM-2 protein [Caenorhabditis briggsae]
Length = 613
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R+RGLP+ I FF+ L+E + IT +DGRPTG AFV+F ED++ + K
Sbjct: 273 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFIT-RTDGRPTGCAFVQFETEEDAQQGLLK 331
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSR 194
R +G RYIELF S+ E+ + + R
Sbjct: 332 HRQVIGQRYIELFKSTAAEVQQVVKR 357
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 18/177 (10%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LF+ + + + TG AF L ++RQ +G+RY+E+F+S E + +
Sbjct: 301 ILFITRTDGRPTGCAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKR--C 358
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSI 138
++ +P + S ++ KD +RLRGLP+ A I++F DF ++ +
Sbjct: 359 NLINSAPVVANAVEVSDEKKKDC------VRLRGLPYEATVQHIVNFLGDFANMVKFQGV 412
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMA----KDRMTLG--SRYIELFPSSHEEMD 189
H+ N+ G P+GEAF++ +E + AA A + M +G RYIE+F SS EE++
Sbjct: 413 HMVYNNQGNPSGEAFIQMI-SEQAAAATASGVHNNFMCVGKKKRYIEVFQSSAEELN 468
>gi|324527735|gb|ADY48838.1| Heterogeneous nuclear ribonucleoprotein F, partial [Ascaris suum]
Length = 166
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 16/142 (11%)
Query: 56 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
M RY+EVF E I H I A S+ ++ + ++RLRG+
Sbjct: 1 MSSRYIEVFSVSESEVSWMIR-----------HGVIKSADSNGTSTGTS-NNYVVRLRGI 48
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
PFSA DI +FF +++ + I GRP+GEAFV A+ E ++ A+ + + +GS
Sbjct: 49 PFSATVADIKEFFSGLDVAD--VVIDKEQGGRPSGEAFVRLASKEHAELALERSKNNMGS 106
Query: 176 RYIELFPSSHEEMDEAL--SRG 195
RY+E+F SS EEMD + SRG
Sbjct: 107 RYVEVFRSSGEEMDNSFYTSRG 128
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 17 MDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+D+ DV+ + + +GEAF L + AL+R++ NMG RYVEVFRS +E
Sbjct: 64 LDVADVVIDKEQGGRPSGEAFVRLASKEHAELALERSKNNMGSRYVEVFRSSGEE 118
>gi|335310367|ref|XP_003361999.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Sus
scrofa]
Length = 444
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 25/168 (14%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMXX 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
AFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 XXXXX-----XAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 186
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 273 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 330
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 331 ATHEDAVAAMAKDKANMQHRYVELFLNS 358
>gi|321446634|gb|EFX60905.1| hypothetical protein DAPPUDRAFT_122743 [Daphnia pulex]
Length = 169
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFAN-AE 160
S + ++ +RGLPF+A DI+ FF F L+ D I I N+DGRP+GEA V F N AE
Sbjct: 87 SGLPGTLVIMRGLPFTASCSDILQFFSGFSELTPDCIQIHRNNDGRPSGEAVVNFPNRAE 146
Query: 161 DSKAAMAKDRMTLGSRYIELF 181
+A K+R +G+RYIELF
Sbjct: 147 AERAIAEKNRQNIGTRYIELF 167
>gi|302850710|ref|XP_002956881.1| hypothetical protein VOLCADRAFT_121578 [Volvox carteri f.
nagariensis]
gi|300257762|gb|EFJ42006.1| hypothetical protein VOLCADRAFT_121578 [Volvox carteri f.
nagariensis]
Length = 628
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 20/179 (11%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 85
H + + GEAF V + A Q++R+ G E F + Y + +++ D++
Sbjct: 63 HPDGRPNGEAFVVFEDSDEARRATQKDRETFG----EKFGDRYVRVYPTLDSDIPDMQA- 117
Query: 86 SPHRSIPRAKSHDEGKDSAVHT------GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
++ +A+ H++ + S H +++++ LPF A + DI+ FF++F L + +
Sbjct: 118 ----AVAQAQLHEQAQGSGNHGHGAHSDSVVKIKSLPFDATQLDIIQFFENFKLKPNGVQ 173
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMT----LGSRYIELFPSSHEEMDEALS 193
+ + SD +PTGEAFV+F E++ ++ KD G RY+ L S +EM L+
Sbjct: 174 LVVRSDNKPTGEAFVDFETPEEAARSIKEKDHKVFSEKFGDRYVRLIQVSRKEMQATLA 232
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 30/164 (18%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRN-----RQNMGRRYVEVFRSKRQEYYKAIAN 77
L V +NK TGEAF P + +++ + G RYV + + R+E +A
Sbjct: 174 LVVRSDNKPTGEAFVDFETPEEAARSIKEKDHKVFSEKFGDRYVRLIQVSRKEMQATLA- 232
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS 137
+R G G+L+++G+PF A D+ FF + + +
Sbjct: 233 ----LRFGG--------------------EGVLKMKGIPFKATAVDVRKFFTGYKVKTEG 268
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
+ M++DGRPTG AF+EF +++ AM KDR G Y + F
Sbjct: 269 VSFIMHADGRPTGMAFIEFETPQEAVRAMEKDRAKFGPEYGDRF 312
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 106 HTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
H G +++++GLPF GK+DI+ FF F + D + + + DGRP GEAFV F ++++++
Sbjct: 25 HDGSVVKMKGLPFKGGKEDIIKFFAGFTVRPDQVFLRKHPDGRPNGEAFVVFEDSDEARR 84
Query: 165 AMAKDRMTLGS----RYIELFPS 183
A KDR T G RY+ ++P+
Sbjct: 85 ATQKDRETFGEKFGDRYVRVYPT 107
>gi|146197828|dbj|BAF57627.1| hnRNP F protein [Dugesia japonica]
Length = 344
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 26/174 (14%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-KAIANEVS 80
++ ++ + + +GEA L + ++ N + MG R++EVF + +++++ + + ++S
Sbjct: 32 LITLNDDGRPSGEALVKLDNEIGLNDLRDYNGKYMGTRFIEVFPATQKDWFGEEMRMKLS 91
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
D+ +RLRGLP+ K+DI FF ++S D + +
Sbjct: 92 DMT-------------------------YVRLRGLPYDVTKEDIFIFFSRLMISRDGVGL 126
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D PTGEAFV+F ED+ A+ + + SRYIE++ SS E+ A+ +
Sbjct: 127 LYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRYIEIYKSSLTEVYRAMEK 180
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 59/212 (27%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS----DVRGGSP 87
TGEAF + ALQR+ Q + RY+E+++S E Y+A+ + ++ S
Sbjct: 135 TGEAFVQFMTREDANLALQRHNQCIRSRYIEIYKSSLTEVYRAMEKQYEINREEILRRSR 194
Query: 88 HR------------------------SIPRAKSHDE----------------GKDSAVHT 107
HR S P+ KS GK+S
Sbjct: 195 HRPANFPPKFNADPYSHVNSYYTDGYSFPQNKSSQGPMRRSRESKNRSNPYGGKNSHSSV 254
Query: 108 GI-------------LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
+ + +RGLP++A + D+ +FF ++E + I + DG+ TGEA
Sbjct: 255 KVETQNFGEFLGPLSIHMRGLPYTATEKDVHEFFAPLRVAE--VKIQLGPDGKNTGEAEA 312
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
+F + D+ AM KDR + RYIELF S +
Sbjct: 313 DFYSENDAVKAMEKDRCKMSWRYIELFRGSSD 344
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 113 RGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
RGLP+SA + DI+ F + +E I IT+N DGRP+GEA V+ N +
Sbjct: 5 RGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLNDLRDYNGK 64
Query: 172 TLGSRYIELFPSSH-----EEMDEALS 193
+G+R+IE+FP++ EEM LS
Sbjct: 65 YMGTRFIEVFPATQKDWFGEEMRMKLS 91
>gi|256087258|ref|XP_002579790.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350644185|emb|CCD61054.1| heterogeneous nuclear ribonucleoprotein-related [Schistosoma
mansoni]
Length = 1009
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 17/175 (9%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L + K + GEA Q AL++++ ++G+RY+EV Y A ++ +
Sbjct: 406 LVLSKIGRRNGEALIQFADAEQQSLALRKHKHHVGKRYIEV--------YAATGSDFISI 457
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF----KDFVLSEDSI 138
GG ++ + GK + + ++R+RGLP++ + I+ F K + + I
Sbjct: 458 AGGESQEAM-----NFLGKLTTPNQTLIRMRGLPYTTTPEQIVRFLCILIKIVQFNANGI 512
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
DGR TG+AFV F ++ A+ ++ +GSRYIELF S+ E+++ ++
Sbjct: 513 LFVNKPDGRATGDAFVIFETKIVAEKALENNKQHIGSRYIELFKSTPAEVNQVMN 567
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 26/147 (17%)
Query: 41 YPLQVDFALQRNRQNM---GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH 97
+P+Q L + Q M G + E F + +EYY AI ++
Sbjct: 327 WPIQHCRILVKVIQKMTLDGMEWTE-FETVNREYYPAIISKT------------------ 367
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
D+ ++R RGLP+ A +I FF +++ I + ++ GR GEA ++FA
Sbjct: 368 ----DTINDNVVVRARGLPWQATDLEIFQFFSGINIAKGGISLVLSKIGRRNGEALIQFA 423
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
+AE A+ K + +G RYIE++ ++
Sbjct: 424 DAEQQSLALRKHKHHVGKRYIEVYAAT 450
>gi|256090135|ref|XP_002581069.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353232933|emb|CCD80288.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 338
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 20/167 (11%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N + GEAF L A+ + Q++GRRY+EVF S + ++++ G P
Sbjct: 42 NGRSNGEAFIELESKDDKQKAMAHHNQHLGRRYIEVFDS--------CSEDLNNAMGCRP 93
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
+ S R + ++RLRGLP+ K +I FF ++ + I + ++ GR
Sbjct: 94 YHSSNRREH------------VVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGR 141
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
TGEA+V+F ++E A K +G RYIE+F S+ E + + R
Sbjct: 142 CTGEAYVQFTSSESLARAKEKHMEKIGHRYIEIFESTMMEANMTIQR 188
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLPFSA DDI+ FF D + + I+ S+GR GEAF+E + +D + AM
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALS 193
A LG RYIE+F S E+++ A+
Sbjct: 64 AHHNQHLGRRYIEVFDSCSEDLNNAMG 90
>gi|353232935|emb|CCD80290.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 497
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 20/167 (11%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N + GEAF L A+ + Q++GRRY+EVF S + ++++ G P
Sbjct: 42 NGRSNGEAFIELESKDDKQKAMAHHNQHLGRRYIEVFDS--------CSEDLNNAMGCRP 93
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
+ S R + ++RLRGLP+ K +I FF ++ + I + ++ GR
Sbjct: 94 YHSSNRREH------------VVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGR 141
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
TGEA+V+F ++E A K +G RYIE+F S+ E + + R
Sbjct: 142 CTGEAYVQFTSSESLARAKEKHMEKIGHRYIEIFESTMMEANMTIQR 188
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLPFSA DDI+ FF D + + I+ S+GR GEAF+E + +D + AM
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
A LG RYIE+F S E+++ A+
Sbjct: 64 AHHNQHLGRRYIEVFDSCSEDLNNAM 89
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P +D+ + S H+ +R+RGLP+SA K+DI F L +I + N+ RPTGE
Sbjct: 283 PGHYEYDDPQSSTGHS--VRMRGLPYSATKEDIDRFLSP--LQPVNIRMRFNAANRPTGE 338
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
A V+FA+ +++K AM KDR +G RYIELF
Sbjct: 339 AIVDFASHDEAKEAMKKDREKIGPRYIELF 368
>gi|112491340|pdb|2HGL|A Chain A, Nmr Structure Of The First Qrrm Domain Of Human Hnrnp F
gi|297787485|pdb|2KFY|A Chain A, Nmr Structure Of The First Qrrm Of Hnrnp F In Complex With
Agggau G- Tract Rna
Length = 136
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 105
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 106 KKDRESMGHRYIEVFKSHRTEMDWVL 131
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R
Sbjct: 68 CTIHD---GAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHR 124
Query: 69 QE 70
E
Sbjct: 125 TE 126
>gi|159485042|ref|XP_001700558.1| RNA binding protein [Chlamydomonas reinhardtii]
gi|158272198|gb|EDO98002.1| RNA binding protein [Chlamydomonas reinhardtii]
Length = 229
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 85
H + + GEAF V + A Q++R+ G E F + Y + +++ D++
Sbjct: 69 HPDGRPNGEAFVVFENSDEARRATQKDRETFG----EKFGDRYVRVYPTLDSDIPDMQA- 123
Query: 86 SPH--RSIPRAKSHDEG-KDSAVHT-------GILRLRGLPFSAGKDDIMDFFKDFVLSE 135
+P+ + + R+ + G KD V + G+L+++G+PF A D+ FF ++ +
Sbjct: 124 APNGVQLVVRSDNKPTGEKDHKVFSEKFGDRYGVLKMKGIPFKATAMDVRKFFANYKIKP 183
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
+ + M++DGRPTG AF+EF +++ AM KDR G Y + F
Sbjct: 184 EGVSFIMHADGRPTGMAFIEFETPQEAVRAMEKDRAKFGPEYGDRF 229
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+++++GLPF K+DI+ FF F L + + + + DGRP GEAFV F N+++++ A K
Sbjct: 35 VVKMKGLPFKGSKEDIIKFFAGFSLRTEHVFLRKHPDGRPNGEAFVVFENSDEARRATQK 94
Query: 169 DRMTLGS----RYIELFPS 183
DR T G RY+ ++P+
Sbjct: 95 DRETFGEKFGDRYVRVYPT 113
>gi|256090133|ref|XP_002581068.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353232934|emb|CCD80289.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 386
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 20/167 (11%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N + GEAF L A+ + Q++GRRY+EVF S + ++++ G P
Sbjct: 42 NGRSNGEAFIELESKDDKQKAMAHHNQHLGRRYIEVFDS--------CSEDLNNAMGCRP 93
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
+ S R + H ++RLRGLP+ K +I FF ++ + I + ++ GR
Sbjct: 94 YHSSNR-REH-----------VVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGR 141
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
TGEA+V+F ++E A K +G RYIE+F S+ E + + R
Sbjct: 142 CTGEAYVQFTSSESLARAKEKHMEKIGHRYIEIFESTMMEANMTIQR 188
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLPFSA DDI+ FF D + + I+ S+GR GEAF+E + +D + AM
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
A LG RYIE+F S E+++ A+
Sbjct: 64 AHHNQHLGRRYIEVFDSCSEDLNNAM 89
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 52 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS----IPRAKSHDEGKDSAVHT 107
NR + RY R + + G SP + P +D+ + S H+
Sbjct: 239 NRGPVPGRYAPYGRPPHVFGHPGYNSPPRGFEGPSPSKGSNFGPPGHYEYDDPQSSTGHS 298
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
+R+RGLP+SA K+DI F L +I + N+ RPTGEA V+FA+ +++K AM
Sbjct: 299 --VRMRGLPYSATKEDIDRFLSP--LQPVNIRMRFNAANRPTGEAIVDFASHDEAKEAMK 354
Query: 168 KDRMTLGSRYIELF 181
KDR +G RYIELF
Sbjct: 355 KDREKIGPRYIELF 368
>gi|344240722|gb|EGV96825.1| Heterogeneous nuclear ribonucleoprotein F [Cricetulus griseus]
Length = 241
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 25/168 (14%)
Query: 10 CTIHHQLMDIVDVLFVHKN-NKFTGEAFCVLGYPLQVDFALQR--NRQNMGRRYVEVFRS 66
CTIH + V F++ + + +GEAF L V AL++ +R++MG RY+EVF+S
Sbjct: 33 CTIHD---GVSGVHFIYTSEGRQSGEAFVELQSENDVKLALKKKKDRESMGHRYIEVFKS 89
Query: 67 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
R + + H RA S ++G +RL GLPF K++I+
Sbjct: 90 HRTKMDWVLK-----------HSGSNRANSANDG--------FVRLPGLPFGCTKEEIVQ 130
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 174
FF + + I + ++ +G+ TGEAF++ A+ E ++ A+ K + +G
Sbjct: 131 FFSGLEIVPNGITLPVDPEGKITGEAFIQIASQELAEKALGKHKERIG 178
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++L GL +S +D+ +F + + + +H S+GR +GEAFVE + D K A+
Sbjct: 11 VVKLCGLLWSGSIEDVQNFLSNCTIHDGVSGVHFIYTSEGRQSGEAFVELQSENDVKLAL 70
Query: 167 AK--DRMTLGSRYIELFPSSHEEMDEAL 192
K DR ++G RYIE+F S +MD L
Sbjct: 71 KKKKDRESMGHRYIEVFKSHRTKMDWVL 98
>gi|256090131|ref|XP_002581067.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
Length = 472
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 20/167 (11%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N + GEAF L A+ + Q++GRRY+EVF S + ++++ G P
Sbjct: 42 NGRSNGEAFIELESKDDKQKAMAHHNQHLGRRYIEVFDS--------CSEDLNNAMGCRP 93
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
+ S R + ++RLRGLP+ K +I FF ++ + I + ++ GR
Sbjct: 94 YHSSNRREH------------VVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGR 141
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
TGEA+V+F ++E A K +G RYIE+F S+ E + + R
Sbjct: 142 CTGEAYVQFTSSESLARAKEKHMEKIGHRYIEIFESTMMEANMTIQR 188
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R+RGLPFSA DDI+ FF D + + I+ S+GR GEAF+E + +D + AM
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
A LG RYIE+F S E+++ A+
Sbjct: 64 AHHNQHLGRRYIEVFDSCSEDLNNAM 89
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P +D+ + S H+ +R+RGLP+SA K+DI F L +I + N+ RPTGE
Sbjct: 283 PGHYEYDDPQSSTGHS--VRMRGLPYSATKEDIDRFLS--PLQPVNIRMRFNAANRPTGE 338
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
A V+FA+ +++K AM KDR +G RYIELF
Sbjct: 339 AIVDFASHDEAKEAMKKDREKIGPRYIELF 368
>gi|159163272|pdb|1WEL|A Chain A, Solution Structure Of Rna Binding Domain In Np_006038
Length = 124
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N D KAA+ + +
Sbjct: 30 LKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQ 89
Query: 172 TLGSRYIELFPSSHEEMDEAL 192
+G+R+I++ P + + M E +
Sbjct: 90 YMGNRFIQVHPITKKGMLEKI 110
>gi|449667958|ref|XP_002158900.2| PREDICTED: epithelial splicing regulatory protein 1-like [Hydra
magnipapillata]
Length = 503
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
Query: 33 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP 92
GEA D AL+R++ ++ RY+EV++ QE+ K + G
Sbjct: 257 GEALVRFESSEHRDMALRRHKHHLLGRYIEVYKGTAQEFLK--------IAKGPAAAMHA 308
Query: 93 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPT 149
A+ G + I+R+RGLPF A D+++FF D + ++ + + DG T
Sbjct: 309 AAEFLTNGGEV-----IIRMRGLPFDATVHDVVEFFGDSPKVLQGKNGVMLISYPDGAST 363
Query: 150 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
G+AFV F + + A+ K R +G RY+ELF S+ E+ + L+
Sbjct: 364 GDAFVLFETEAEGQFALKKHRENIGKRYVELFRSTRAELQQVLT 407
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 19/126 (15%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGG 85
TG+AF + + FAL+++R+N+G+RYVE+FRS R E + + V+ V G
Sbjct: 363 TGDAFVLFETEAEGQFALKKHRENIGKRYVELFRSTRAELQQVLTMYNIGYQLVTPVPGQ 422
Query: 86 SPHRSIPRAKSHDEG-----KDSAVHTGILRLRGLPFSAGKDDIMDF---FKDFVLSEDS 137
P P + +D + ++ LR+RGLPFSA DI++F +K+ V+ S
Sbjct: 423 LP---FPGSGLNDRALINQRLQALMNMSCLRMRGLPFSASHKDILNFLGNYKENVVG--S 477
Query: 138 IHITMN 143
+HI N
Sbjct: 478 VHIIYN 483
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ D+ FF +++ + + +N GR GEA V F ++E A+ +
Sbjct: 216 IVRARGLPWQVSDVDVAAFFTGLNIAKGGVALCLNVKGRRNGEALVRFESSEHRDMALRR 275
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ L RYIE++ + +E
Sbjct: 276 HKHHLLGRYIEVYKGTAQE 294
>gi|410562529|pdb|2LXU|A Chain A, Solution Nmr Structure Of The Eukaryotic Rna Recognition
Motif, Rrm1, From The Heterogeneous Nuclear
Ribonucleoprotein H From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8614a
Length = 108
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 9 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 68
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 69 KKDRETMGHRYVEVFKSNNVEMDWVL 94
Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
+GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 51 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 89
>gi|149052457|gb|EDM04274.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_c [Rattus
norvegicus]
Length = 134
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 19/97 (19%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF L +V AL+++R+ MG RYVEVF+S E + + + SP
Sbjct: 54 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP---- 105
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
D+A + G +RLRGLPF K++I+ FF
Sbjct: 106 ----------DTA-NDGFVRLRGLPFGCSKEEIVQFF 131
>gi|71121745|gb|AAH99792.1| Hnrph1 protein [Rattus norvegicus]
Length = 184
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 19/101 (18%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GEAF L +V AL+++R+ MG RYVEVF+S E + + + SP
Sbjct: 54 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP---- 105
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
D+A + G +RLRGLPF K++I+ FF +
Sbjct: 106 ----------DTA-NDGFVRLRGLPFGCSKEEIVQFFSGIL 135
>gi|351714130|gb|EHB17049.1| Epithelial splicing regulatory protein 2 [Heterocephalus glaber]
Length = 719
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 19/155 (12%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 324 LCLNAQGRRNGEALIRFTDREQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 375
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK---DFVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 376 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLSFLGPECPVTGGADGLL 427
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 174
+ DGRPTG+AF FA E ++AA+ + + L
Sbjct: 428 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLA 462
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE + AA
Sbjct: 469 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 528
Query: 168 K-DRMTLGSRYIELFPSSHEEMDEALSRG 195
+ + + RY+E+ S E+M L G
Sbjct: 529 RCHKKMMKERYVEVVSCSTEDMSRVLMGG 557
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F + E A+ +
Sbjct: 293 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFTDREQRDLALQR 352
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 353 HKHHMGVRYIEVYKATGEE 371
>gi|431912397|gb|ELK14531.1| Epithelial splicing regulatory protein 2 [Pteropus alecto]
Length = 698
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 19/155 (12%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 303 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 354
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK---DFVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 355 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLGFLGPECPVTGGADGLL 406
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 174
+ DGRPTG+AF FA E ++AA+ + + L
Sbjct: 407 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLA 441
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE + AA
Sbjct: 448 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAIAAAQ 507
Query: 168 K-DRMTLGSRYIELFPSSHEEMDEALSRG 195
+ + + RY+E+ P S EEM L G
Sbjct: 508 RCHKKVMKERYVEVVPCSTEEMSRVLMGG 536
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 272 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 331
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 332 HKHHMGVRYIEVYKATGEE 350
>gi|159486121|ref|XP_001701092.1| heterogeneous nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
gi|158271986|gb|EDO97794.1| heterogeneous nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
Length = 295
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLS---EDSIHITMNSDG-RPTGEAFVEFANAEDS 162
T L+LRGLPF+A DDI+ FF D L D + M +DG RPTG A V+F +
Sbjct: 197 TTWLKLRGLPFAAVPDDIIAFFDDPSLGIPRLDPSRVHMWTDGGRPTGMALVQFNTPAEV 256
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
A AKD+ +G+RY+E+FP++ ++D+ ++R
Sbjct: 257 SMARAKDKQLMGTRYVEIFPATRGDLDKFMAR 288
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 49/61 (80%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
++ VD++ V ++ +F+GEAF V+G QV+ A+ ++RQ +G+R++E+F +++++YY+A+A
Sbjct: 50 LEPVDIVMVKRDGRFSGEAFVVVGNLQQVEAAMTKHRQFIGQRFIEIFPAQKRDYYRAVA 109
Query: 77 N 77
N
Sbjct: 110 N 110
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 17/108 (15%)
Query: 98 DEGKDSAVHTGI-----------LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM-NSD 145
+EG D + G+ +RLRGLPF + DI F L + + I M D
Sbjct: 7 EEGLDPGMAGGVQGQIGPDGFPCVRLRGLPFDVMEGDIKMF-----LELEPVDIVMVKRD 61
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
GR +GEAFV N + +AAM K R +G R+IE+FP+ + A++
Sbjct: 62 GRFSGEAFVVVGNLQQVEAAMTKHRQFIGQRFIEIFPAQKRDYYRAVA 109
>gi|340380887|ref|XP_003388953.1| PREDICTED: RNA-binding protein 12B-like [Amphimedon queenslandica]
Length = 746
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDS 162
V + +RLRGLP+SA DI+DF KD + E +H + SDGR +GEA+VE + D
Sbjct: 131 VESYFVRLRGLPYSAMASDILDFLKDVQVKDGEKGVHFSFGSDGRVSGEAYVEVCSGGDV 190
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMD 189
+ A+ DR LG RYIE+F +S + +
Sbjct: 191 ERALRHDRDHLGGRYIEVFRASQNQFE 217
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 25/169 (14%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
+ + +GEA+ + V+ AL+ +R ++G RY+EVFR+ + ++ E ++
Sbjct: 173 DGRVSGEAYVEVCSGGDVERALRHDRDHLGGRYIEVFRASQNQF----EYECHPMK---- 224
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSD 145
G++RLRGLP+ + +D+I DFF+ +S HITM N
Sbjct: 225 -----------GPGVGGRAGGVVRLRGLPYGSTEDNIRDFFQGIAIS----HITMQLNES 269
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
GR TGEAFVE + ED A+ + + LG RYIE+F ++ ++ R
Sbjct: 270 GRETGEAFVELFHEEDVDRALDRHKKVLGHRYIEVFRTTRSDIKPVADR 318
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD--GRPTGEAFVEFANAEDSKAAM 166
+R+RGLP+SA + +I DFF V +T+ D GR +GE VEF ED+ AM
Sbjct: 585 CVRMRGLPYSASEREIFDFFSPLV----PFRVTLEKDTYGRASGEGEVEFCTHEDAVNAM 640
Query: 167 AKDRMTLGSRYIELF 181
KDR +GSRY+ELF
Sbjct: 641 KKDRGHIGSRYVELF 655
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD--GRPTGEAFVEFANAEDSKAAM 166
+R+RGLP+SA + +I DFF V +T+ D GR +GE VEF ED+ AM
Sbjct: 398 CVRMRGLPYSASEREIFDFFSPLV----PFRVTLEKDTYGRASGEGEVEFCTHEDAVNAM 453
Query: 167 AKDR 170
KDR
Sbjct: 454 KKDR 457
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84
++++ + TGEAF L + VD AL R+++ +G RY+EVFR+ R + K +A+ +
Sbjct: 266 LNESGRETGEAFVELFHEEDVDRALDRHKKVLGHRYIEVFRTTRSD-IKPVADRWAKYSR 324
Query: 85 GSPH 88
+P+
Sbjct: 325 PAPY 328
>gi|384253302|gb|EIE26777.1| hypothetical protein COCSUDRAFT_64653 [Coccomyxa subellipsoidea
C-169]
Length = 472
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 165
G ++LRG+PF+ K DI FF +SED + + + DGRPTGEA+VE + A + A
Sbjct: 377 GWIKLRGIPFTITKPDICSFFSTCGQMSEDKVKLVVGPDGRPTGEAYVEISGAGAKLRLA 436
Query: 166 MAKDR--MTLGSRYIELFPSSHEEMD 189
+AKDR M SRYIE+F S+ +E+D
Sbjct: 437 LAKDRQIMPGSSRYIEIFTSTRDEVD 462
>gi|118090272|ref|XP_420600.2| PREDICTED: G-rich sequence factor 1 [Gallus gallus]
Length = 410
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 27/190 (14%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+ I D+ FV++ + TGEA+ P V AL R+++ M RY+EV+ S ++E + ++
Sbjct: 212 LRITDMTFVYRGERKTGEAYVQFAAPEMVAKALLRHKEYMENRYIEVYISTKREMQRHLS 271
Query: 77 ------------------NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-------ILR 111
E+ RG S R A E + +G +
Sbjct: 272 LRKEMIRLRRELGSTAEERELDYTRGSSAEREKEVASEAAESSGLSSQSGSILSSLRTVH 331
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RG P DI+DFF L I I NSDG TGEA V F + +D+ AAMAK+R
Sbjct: 332 VRGFPPQVSAQDIVDFFAP--LKPTRILIEYNSDGVATGEADVHFESYDDAVAAMAKERA 389
Query: 172 TLGSRYIELF 181
L +E+F
Sbjct: 390 QLQFGTVEVF 399
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ + G+A L V AL++N + MG RYV+V +E+ D
Sbjct: 124 FLLNRDGRRRGDALIELESKADVQKALEKNLRYMGTRYVKV-------------HEIHDK 170
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
+S+ R +S + G++ LRGLPF + +DDI DFF +++ +T
Sbjct: 171 DVDGLLQSL-RYESE------VMSDGVVLLRGLPFDSTEDDIADFFAGLRITD----MTF 219
Query: 143 NSDG-RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
G R TGEA+V+FA E A+ + + + +RYIE++ S+ EM LS
Sbjct: 220 VYRGERKTGEAYVQFAAPEMVAKALLRHKEYMENRYIEVYISTKREMQRHLS 271
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVE 155
+E +DS ++R G PF+ K ++M FF + E+ IH +N DGR G+A +E
Sbjct: 83 EENEDSVF---LIRAHGFPFACTKKEMMAFFDSCKIRNGENGIHFLLNRDGRRRGDALIE 139
Query: 156 FANAEDSKAAMAKDRMTLGSRYIEL 180
+ D + A+ K+ +G+RY+++
Sbjct: 140 LESKADVQKALEKNLRYMGTRYVKV 164
>gi|358253640|dbj|GAA53549.1| epithelial splicing regulatory protein 1 [Clonorchis sinensis]
Length = 1176
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFK----DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
++R+RGLPF+A K I+DFFK +L + I++ +GRPTG+AFV F++ + +
Sbjct: 513 VVRVRGLPFTATKQQILDFFKAVEAPVLLEANGIYLVAYPEGRPTGDAFVLFSDDKTATR 572
Query: 165 AMAKDRMTLGSRYIELFPSSHEEM 188
A+ + + LG RY+ELF +S EM
Sbjct: 573 ALLRHKDYLGDRYVELFKASPSEM 596
>gi|159164063|pdb|2DB1|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein F Homolog
Length = 118
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 19 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 78
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 79 KKDRESMGHRYIEVFKSHRTEMDWVL 104
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 41 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 97
Query: 69 QE 70
E
Sbjct: 98 TE 99
>gi|449265752|gb|EMC76898.1| RNA-binding protein 12, partial [Columba livia]
Length = 853
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 12/157 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV-------SDVRGGSPHRSIPRAKSHDEG 100
AL+RNR M +RYVEV + +++ A + S P + R+KS
Sbjct: 344 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQTMGPSGQSHPPPPQPHSRSKSPSGQ 403
Query: 101 KDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 155
K S + + L+GLPF + ++DFFK + EDSI+I +G+ GE FVE
Sbjct: 404 KRSRSRSPHEQGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVE 463
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
F N D KAA+ + +G+R+I++ P + + M E +
Sbjct: 464 FRNEADYKAALCHHKQYIGNRFIQVHPITKKAMLEKI 500
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA + D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 291 VSIHGMPFSATESDVKDFF--LGLRVDAVHMLKDHVGRNNGNGLVKFFSPQDTFEALKRN 348
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 349 RMLMIQRYVEVSPATERQWVAA 370
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
H S P GK +++++ +PF+ D+I+DFF + + S+ + N G
Sbjct: 772 HISGPPGFGTGSGKPGPT---VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGM 828
Query: 148 PTGEAFVEFANAEDSKAAM 166
PTGEA V F + +++ AA+
Sbjct: 829 PTGEAMVAFESRDEAMAAV 847
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 32/188 (17%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV---------- 63
+DIV D +++ N K GE F AL ++Q +G R+++V
Sbjct: 439 LDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITKKAMLE 498
Query: 64 ---FRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG 120
KR + + E+ G P +P+ +H + +P++
Sbjct: 499 KIDMIRKRLQNFSYDQREILMNAEGEP--GLPKLCAH--------------ISNIPYNIT 542
Query: 121 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180
K +I+ F + + E+S+ I ++++G+ G+A V+F +D++ A R L R + L
Sbjct: 543 KMEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKAEDDARKAERLHRKKLNGRDVVL 602
Query: 181 FPSSHEEM 188
+ EEM
Sbjct: 603 RLITVEEM 610
>gi|358252891|dbj|GAA50442.1| epithelial splicing regulatory protein 1/2 [Clonorchis sinensis]
Length = 846
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 17/175 (9%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L + K + GEA Q D AL++++ +MG+RYVEV+ ++ +E+ E ++
Sbjct: 441 LVLSKIGRRNGEALIRFTDQEQRDLALRKHKHHMGQRYVEVYAAQGREFVAFAGAETTEA 500
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD----FVLSEDSI 138
K ++ + ++R+RGLP++ +++FF + E+ +
Sbjct: 501 E-------------EFLKKFTSPYQALIRMRGLPYATTVQQVLEFFSNTDCAVQFGEEGV 547
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+GR TG+AFV F N + A+ +G+RYIELF S+ E+++ ++
Sbjct: 548 LFVNRRNGRATGDAFVIFENQAIGEKALQNHWQHIGNRYIELFKSTPAEVNQVMN 602
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ A DI FF +S I + ++ GR GEA + F + E A+ K
Sbjct: 410 VIRARGLPWQATDLDIFHFFSGLNISNGGISLVLSKIGRRNGEALIRFTDQEQRDLALRK 469
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RY+E++ + E
Sbjct: 470 HKHHMGQRYVEVYAAQGRE 488
>gi|46195836|ref|NP_996869.1| RNA-binding protein 12 [Gallus gallus]
gi|37932175|gb|AAP69823.1| SWAN ribonucleoprotein [Gallus gallus]
Length = 887
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 28/165 (16%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA-----------------IANEVSDVRGGSP--- 87
AL+RNR M +RYVEV + +++ A R SP
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQTMGPSGQPHPPPPQPHFRSKSPSGQ 418
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
RS R+ H++G + L+GLPF + ++DFFK + EDSI+I +G+
Sbjct: 419 KRSRSRSP-HEQGF-------CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGK 470
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
GE FVEF N D KAA+ + +G+R+I++ P + + M E +
Sbjct: 471 AIGEGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITKKAMLEKI 515
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA + D+ +FF L D+IH+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSIHGMPFSATESDVKEFF--LGLRVDAIHMLKDHVGRNNGNGLVKFFSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
H S P GK +++++ +PF+ D+I+DFF + + S+ + N G
Sbjct: 787 HISGPPGFGTGSGKPGPT---VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGM 843
Query: 148 PTGEAFVEFANAEDSKAAM 166
PTGEA V F + +++ AA+
Sbjct: 844 PTGEAMVAFESRDEAMAAV 862
Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K GE F AL ++Q +G R+++V ++
Sbjct: 454 LDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITKKAMLE 513
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R I A++ H + +P++ K +I+
Sbjct: 514 KIDLIRKRLQNFNYDQR-----EIIMNAEAESGSPKLCAH-----ISNIPYNITKMEILQ 563
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+S+ I ++++G+ G+A V+F +D++ A R L R + L + E
Sbjct: 564 FLEGLAVEENSVQILVDNNGQGLGQALVQFKAEDDARKAERLHRKKLNGRDVVLRLITVE 623
Query: 187 EM 188
EM
Sbjct: 624 EM 625
>gi|363741413|ref|XP_003642489.1| PREDICTED: RNA-binding protein 12-like [Gallus gallus]
Length = 880
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 28/165 (16%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA-----------------IANEVSDVRGGSP--- 87
AL+RNR M +RYVEV + +++ A R SP
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQTMGPSGQPHPPPPQPHSRSKSPSGQ 418
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
RS R+ H++G + L+GLPF + ++DFFK + EDSI+I +G+
Sbjct: 419 KRSRSRSP-HEQGF-------CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGK 470
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
GE FVEF N D KAA+ + +G+R+I++ P + + M E +
Sbjct: 471 AIGEGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITKKAMLEKI 515
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA + D+ +FF L D+IH+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSIHGMPFSATESDVKEFF--LGLRVDAIHMLKDHVGRNNGNGLVKFFSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
H S P GK +++++ +PF+ D+I+DFF + + S+ + N G
Sbjct: 787 HISGPPGFGTGSGKPGPT---VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGM 843
Query: 148 PTGEAFVEFANAEDSKAAMA--KDRMTLGSRYIEL 180
PTGEA V F + +++ AA+ DR +GSR ++L
Sbjct: 844 PTGEAMVAFESRDEAMAAVVDLNDR-PIGSRKVKL 877
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K GE F AL ++Q +G R+++V ++
Sbjct: 454 LDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITKKAMLE 513
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R I A++ H + +P++ K +I+
Sbjct: 514 KIDLIRKRLQNFNYDQR-----EIIMNAEAESGSPKLCAH-----ISNIPYNITKMEILQ 563
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+S+ I ++++G+ G+A V+F +D++ A R L R + L + E
Sbjct: 564 FLEGLAVEENSVQILVDNNGQGLGQALVQFKAEDDARKAERLHRKKLNGRDVVLRLITVE 623
Query: 187 EM 188
EM
Sbjct: 624 EM 625
>gi|221507828|gb|EEE33415.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii VEG]
Length = 510
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 97/170 (57%), Gaps = 17/170 (10%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
+ + TGEA+ L P + A++ + + +G R++EVFR+ +E+ KA D R +
Sbjct: 90 DKRTTGEAYVQLPDPGLREQAIKDLHGRLLGTRWIEVFRASEEEFQKA------DDRRKT 143
Query: 87 PHRSIPRAKSHDEGKDSA--VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 144
+I + + D++ ++ +++LRGLP+S +++I+ FFK F + D + + +
Sbjct: 144 VMAAI---SGNTDSLDASRRMNLNVVKLRGLPWSCSENEIVRFFKGFDIHSDDVVLGVTG 200
Query: 145 DGRPTGEAFVEFAN---AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
DGR +G AFVE + AE ++ + K M G R+IE++P++ E+M A
Sbjct: 201 DGRLSGIAFVELPSPDVAEKAREVLHKKYM--GRRFIEVYPATREDMQRA 248
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 94 AKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 152
A H G D+A + +LRLRGLP+SA + I+ FF F ++ + T+ DGRP+GEA
Sbjct: 396 AGPHHGGMDTANWSAQVLRLRGLPYSANEQHIVQFFHGFHMAA-ILPSTIPIDGRPSGEA 454
Query: 153 FVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+V+F +A ++ +A AK+ + R IELFPSS +EM+ A G
Sbjct: 455 YVQFVDAAEALRAFQAKNGGRMDKRMIELFPSSKQEMEFAAQGG 498
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++RLRGLP+ +++++ FFK V L D++ I + D R TGEA+V+ + + A+
Sbjct: 53 VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAI- 111
Query: 168 KD--RMTLGSRYIELFPSSHEEMDEALSR 194
KD LG+R+IE+F +S EE +A R
Sbjct: 112 KDLHGRLLGTRWIEVFRASEEEFQKADDR 140
>gi|148667169|gb|EDK99585.1| mCG133010, isoform CRA_b [Mus musculus]
Length = 149
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 23/138 (16%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDG 146
+ + I + ++ +G
Sbjct: 132 SGLEIVPNGITLPVDPEG 149
>gi|395737930|ref|XP_003777005.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H2-like [Pongo abelii]
Length = 596
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 21/166 (12%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L Q+ ++R+ MG R+VEVF+S E + VS
Sbjct: 30 ICFIYTREGRPSGEAFVEL-ESXQMKRTGFKDRETMGHRHVEVFKSNSVE-----MDWVS 83
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
G S D D G + LRGLPF K++I+ FF + + I +
Sbjct: 84 KHTG---------LNSPDTAND-----GFVWLRGLPFGCXKEEIVHFFSGLEIVPNGITL 129
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
++ GR TGEAFV A+ E ++ A+ K R +G RYIE+ S E
Sbjct: 130 XVDFQGRSTGEAFVPLASQEIAETALKKHRERIGHRYIEIXNSQAE 175
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++++GLP+S D++M F + + S I +GRP+GEAFVE + + + K
Sbjct: 1 MKVQGLPWSCSADEVMHFSDCKIQNGTSGICFIYTREGRPSGEAFVELESXQMKRTGF-K 59
Query: 169 DRMTLGSRYIELFPSSHEEMD 189
DR T+G R++E+F S+ EMD
Sbjct: 60 DRETMGHRHVEVFKSNSVEMD 80
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 84 GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 143
G S HR S VHT RGLP+ A K+ +F+ L+ +HI +
Sbjct: 255 GMSDHRXGDSGSSFQSTTGHCVHT-----RGLPYRATKN-XYNFYSP--LNHVRVHIEIG 306
Query: 144 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
D R TG A VEFA +D+ AMAKD+ + RY+E+F
Sbjct: 307 PDDRVTGRADVEFAAHKDAVVAMAKDKANMQHRYMEIF 344
>gi|401410426|ref|XP_003884661.1| GL11864, related [Neospora caninum Liverpool]
gi|325119079|emb|CBZ54631.1| GL11864, related [Neospora caninum Liverpool]
Length = 503
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 94 AKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 152
A H G DS+ + +LRLRGLP+SA + I+ FF F ++ + T+ DGRP+GEA
Sbjct: 389 AGPHHGGMDSSNWSAQVLRLRGLPYSANEQHIVQFFNGFHMAA-ILPSTIPIDGRPSGEA 447
Query: 153 FVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+V+F +A ++ +A AK+ + R IELFPSS +EM+ A G
Sbjct: 448 YVQFVDAAEAFRAFQAKNGARMDKRMIELFPSSKQEMEFAAQGG 491
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 95/171 (55%), Gaps = 16/171 (9%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
+ + TGEA+ L P + A++ + + +G R++EVFR+ +E+ KA D R +
Sbjct: 91 DKRTTGEAYVQLPDPGLREQAIKDLHGRLLGTRWIEVFRASEEEFQKA------DDRRKT 144
Query: 87 PHRSIPRAKSHDEGKDSA--VHTGILRLRGLPFSAGKDDIMDFFK---DFVLSEDSIHIT 141
+I + + D++ ++ +++LRGLP+S + +I+ FFK F + D + +
Sbjct: 145 VMAAI---SGNTDSLDASRRMNLNVVKLRGLPWSCSESEIVRFFKAEGGFEIHNDDVVLG 201
Query: 142 MNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
+ DGR +G AFVE + E + KA + +G R+IE++P++ E+M A
Sbjct: 202 VTGDGRLSGIAFVELPSPEVAEKAREVLHKKYMGRRFIEVYPATREDMQRA 252
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
A T ++RLRGLP+ +++++ FFK V L D++ I + D R TGEA+V+ +
Sbjct: 49 AKPTFVVRLRGLPWDVQEENVVAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLR 108
Query: 163 KAAMAKD--RMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ KD LG+R+IE+F +S EE +A R
Sbjct: 109 EQAI-KDLHGRLLGTRWIEVFRASEEEFQKADDR 141
>gi|343961567|dbj|BAK62373.1| heterogeneous nuclear ribonucleoprotein H [Pan troglodytes]
Length = 357
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+
Sbjct: 19 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 78
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 79 KHKERIGHRYIEIFKSSRAEV 99
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 198 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 255
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 256 DKANMQHRYVELFLNS 271
>gi|355761375|gb|EHH61795.1| hypothetical protein EGM_19914 [Macaca fascicularis]
Length = 357
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+
Sbjct: 19 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 78
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 79 KHKERIGHRYIEIFKSSRAEV 99
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 198 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 255
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 256 DKANMQHRYVELFLNS 271
>gi|427792669|gb|JAA61786.1| Putative splicing factor hnrnp-f, partial [Rhipicephalus
pulchellus]
Length = 302
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 36/187 (19%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR-------- 83
TGEAF + A+ ++++ +G RY+E+F+S QE A+ V +
Sbjct: 44 TGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVGMGVPKMMRPMGSARP 103
Query: 84 ---------GGSPHR-SIPRAKSHDEG---KDSAVHTG-------------ILRLRGLPF 117
GG P R + R + G +D G + +RGLPF
Sbjct: 104 GPYDRAERFGGGPSRYGMGRGGRNFRGFVEEDGYADFGGSGGGARFSATGHFVHMRGLPF 163
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
A + DI +FF+ ++ ++H+ GRP+GE VEFA E++ AM+KD+ + RY
Sbjct: 164 RATERDIFEFFQP--MNPINVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRY 221
Query: 178 IELFPSS 184
IELF +S
Sbjct: 222 IELFLNS 228
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 124 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
I+ + + + I + + GR TGEAFV+FA + ++ AM K + +G RYIE+F S
Sbjct: 19 ILGLIEGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKS 78
Query: 184 SHEEMDEALSRG 195
S +E+ A+ G
Sbjct: 79 SLQEIRSAVGMG 90
>gi|229891743|sp|A8WPC5.2|SYM2_CAEBR RecName: Full=RNA-binding protein sym-2; AltName: Full=Synthetic
lethal with mec-8 protein 2
Length = 634
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG--EAFVEFANAEDSKAAM 166
I+R+RGLP+ I FF+ L+E + IT +DGRPTG +AFV+F ED++ +
Sbjct: 286 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFIT-RTDGRPTGNCDAFVQFETEEDAQQGL 344
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
K R +G RYIELF S+ E+ + + R
Sbjct: 345 LKHRQVIGQRYIELFKSTAAEVQQVVKR 372
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 17/149 (11%)
Query: 49 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 108
L ++RQ +G+RY+E+F+S E + + ++ +P + S ++ KD
Sbjct: 344 LLKHRQVIGQRYIELFKSTAAEVQQVVKR--CNLINSAPVVANAVEVSDEKKKDC----- 396
Query: 109 ILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+RLRGLP+ A I++F DF ++ +H+ N+ G P+GEAF++ +E + AA
Sbjct: 397 -VRLRGLPYEATVQHIVNFLGDFANMVKFQGVHMVYNNQGNPSGEAFIQMI-SEQAAAAT 454
Query: 167 A----KDRMTLG--SRYIELFPSSHEEMD 189
A + M +G RYIE+F SS EE++
Sbjct: 455 ASGVHNNFMCVGKKKRYIEVFQSSAEELN 483
>gi|159163318|pdb|1WG5|A Chain A, Solution Structure Of The First Rrm Domain In
Heterogeneous Nuclear Ribonucleoprotein H
Length = 104
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFKSSRAEV 96
>gi|268565477|ref|XP_002639457.1| C. briggsae CBR-HRPF-1 protein [Caenorhabditis briggsae]
Length = 556
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
+N + +G+A AL+++R+++G RY+EVF + N+ RGG
Sbjct: 38 RNGRTSGDATVTFTNEDDYRQALKKDREHLGSRYIEVFPMDEPPRRRGDRNDFR-PRGGG 96
Query: 87 PHRSIPRAKSHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141
P PR + D G S TG I+RLRGLPFS DI DF + D I +
Sbjct: 97 P----PRDRFSDRG--SGQRTGPSTDPIVRLRGLPFSVTIRDINDFLAPLPIVRDGILLP 150
Query: 142 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
R GEA+V F + E + A + +G RYIE+F ++ E+
Sbjct: 151 DQQRARIAGEAYVVFDSLESVQIAKQRHMKNIGHRYIEVFEATQREL 197
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++ RGLP+ A + D+ DFF + ++ I I +GR +G+A V F N +D + A+ KD
Sbjct: 7 VQCRGLPWEATEQDLRDFFGNNGIASLDIPIR---NGRTSGDATVTFTNEDDYRQALKKD 63
Query: 170 RMTLGSRYIELFPSSHEEMDEALSR 194
R LGSRYIE+FP MDE R
Sbjct: 64 REHLGSRYIEVFP-----MDEPPRR 83
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD-GRPTGEAFVEFANAEDSKAAMA 167
+LR+RG+PF A + D+ +FF + + + + +S RP+G+A V F + +D A+
Sbjct: 479 VLRMRGVPFRATETDVYEFFH--PIRPNQVELIRDSQYQRPSGDARVIFYSRKDYDDALM 536
Query: 168 KDRMTLGSRYIELFP 182
KD+ +G RYIE+ P
Sbjct: 537 KDKQYMGERYIEMIP 551
>gi|442746139|gb|JAA65229.1| Putative splicing factor hnrnp-f, partial [Ixodes ricinus]
Length = 206
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 38/187 (20%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV--------- 82
TGEAF + A+ ++++ +G RY+E+F+S QE A+ V +
Sbjct: 3 TGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVGMGVPKMMRPLGTARP 62
Query: 83 -------RGGSPHR-SIPRAKSHDEG----------------KDSAVHTG-ILRLRGLPF 117
R G P R + R + G + SA TG + +RGLPF
Sbjct: 63 GPYDRGDRFGGPSRYGMGRGGRNFRGFVEEDGYGDFGGSGGARYSA--TGHFVHMRGLPF 120
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
A + DI +FF+ ++ ++H+ GRP+GE VEFA E++ AM+KD+ + RY
Sbjct: 121 RATERDIFEFFQP--MNPMNVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRY 178
Query: 178 IELFPSS 184
IELF +S
Sbjct: 179 IELFLNS 185
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
R TGEAFV+FA + ++ AM K + +G RYIE+F SS +E+ A+ G
Sbjct: 1 RSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVGMG 49
>gi|384253335|gb|EIE26810.1| hypothetical protein COCSUDRAFT_46239 [Coccomyxa subellipsoidea
C-169]
Length = 877
Score = 73.2 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+LR+RGLP+ A +D++ FF+ + S I T DGRP GEA+VEF + + K A+
Sbjct: 323 VLRMRGLPYGATAEDVVHFFEGIEIERGSAGIAFTCTPDGRPKGEAYVEFPSEDAQKEAL 382
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + +G RYIELF SS M +A+ +
Sbjct: 383 KRHKNEIGDRYIELFVSSKANMIQAVQQ 410
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 33/171 (19%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANE--------------------------VSD 81
AL+R++ +G RY+E+F S + +A+
Sbjct: 381 ALKRHKNEIGDRYIELFVSSKANMIQAVQQSNYYLGQSQHAMGPSLLPHPLPPLPLHGPL 440
Query: 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141
G+P+ P + + LRLRGLP+SAG D+I FF F L+ D I +
Sbjct: 441 ASFGAPYGHAPYGQGAPMQSVVSADGSTLRLRGLPYSAGIDEITSFFAGFSLASDGIQVV 500
Query: 142 MNSDGR----PTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFP--SSH 185
D TG A+V F N E++ +A + R +G+RYIE P +SH
Sbjct: 501 TKPDKEGNQLGTGVAYVRFGNPEEAERARKERHRAQMGARYIECLPFTASH 551
>gi|242017923|ref|XP_002429433.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514365|gb|EEB16695.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 498
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 28/206 (13%)
Query: 15 QLMDIVD----VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQ 69
Q DI D +LFV K + + TG+AF + + AL ++++ +G RY+E+FRS
Sbjct: 65 QSCDIFDGENGILFVKKPDGRSTGDAFVQFIHESEAIAALSKHKELIGTRYIELFRSTPA 124
Query: 70 EYYKAIANEVSDVRGGSPHR----------SIPRAKSHDEGKDSAVHTGILRLRGLPFSA 119
E + N++ S R IP A S +RLRGLP+ A
Sbjct: 125 EVEQVSRNDIYIKAQESKPRVPAVQLPLVAPIPPAAVPQHVITSGTKKDCIRLRGLPYEA 184
Query: 120 GKDDIMDFFKD----FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD----RM 171
+ I+DF D VL +H+ N G+P+GEAF++ ++E S + A M
Sbjct: 185 QVEHILDFLGDNANNIVL--QGVHMVYNVHGQPSGEAFIQM-DSEVSASQAANHCHHRYM 241
Query: 172 TLG--SRYIELFPSSHEEMDEALSRG 195
G RY+E+F S ++M+ L+ G
Sbjct: 242 NFGKKQRYVEVFQCSGDDMNAFLTSG 267
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
Query: 109 ILRLRGLPFSAGKDDIMDFFK------DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLP+ ++DFF+ D E+ I DGR TG+AFV+F + ++
Sbjct: 41 IIRMRGLPYECSSKQVIDFFREGEQSCDIFDGENGILFVKKPDGRSTGDAFVQFIHESEA 100
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDE 190
AA++K + +G+RYIELF S+ E+++
Sbjct: 101 IAALSKHKELIGTRYIELFRSTPAEVEQ 128
>gi|407393563|gb|EKF26660.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi marinkellei]
Length = 454
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 10/100 (10%)
Query: 85 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 144
G P PRA S ++R+RG+P++A ++ I +FF + +H+ N
Sbjct: 332 GHPPMMAPRAPSPH----------VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNE 381
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
RPTGEAFVE N D AA+ ++ +G+RYIE+F SS
Sbjct: 382 QNRPTGEAFVELENDSDLVAALERNGGAMGNRYIEVFQSS 421
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 26/159 (16%)
Query: 33 GEAFCVLGYPLQVDFALQR-NRQNM-GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS 90
G F L P V+ ++++ +RQ++ RYVE+ S +E + +
Sbjct: 99 GTGFVRLKKPEDVEESIKKLHRQHIDANRYVELTASTEEERQRIL--------------- 143
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 150
E ++ T +LRLRGLPF++ ++D+ +F + V + I + +GR TG
Sbjct: 144 --------EQQEQGCKTHVLRLRGLPFTSTEEDLREFVR-CVPGVTRVDICRDLEGRNTG 194
Query: 151 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
+AF++ A ED + A T+GSRYIE+ PS+ + D
Sbjct: 195 DAFIQLATEEDVEEAKQLHNKTMGSRYIEVLPSTMYDRD 233
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEA 152
++ +E + T ++RL GLP+S ++ I FF +F L E+ +H T +G G
Sbjct: 45 QTGEEDIPVVIETRVVRLHGLPYSVSEETIRAFFAEFELDENDPILHFT---EGLHRGTG 101
Query: 153 FVEFANAEDSKAAMAK--DRMTLGSRYIELFPSSHEEMDEALSR 194
FV ED + ++ K + +RY+EL S+ EE L +
Sbjct: 102 FVRLKKPEDVEESIKKLHRQHIDANRYVELTASTEEERQRILEQ 145
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
+ ++ N+ TGEAF L + AL+RN MG RY+EVF+S
Sbjct: 377 MVYNEQNRPTGEAFVELENDSDLVAALERNGGAMGNRYIEVFQS 420
>gi|442746051|gb|JAA65185.1| Putative splicing factor hnrnp-f, partial [Ixodes ricinus]
Length = 141
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFK----DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
+LR+RGLP+S K++I++FF + +H+T++ +GRP+GEA++E + +D +
Sbjct: 7 VLRIRGLPWSPTKEEILNFFTSKEVNIKGGISGVHMTLSREGRPSGEAYIELESEQDVEV 66
Query: 165 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + +G RYIE+F S EMD + R
Sbjct: 67 GLQRHNEHIGHRYIEVFKSKRSEMDWVVKR 96
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 19/118 (16%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
+ + + + +GEA+ L V+ LQR+ +++G RY+EVF+SKR E +
Sbjct: 42 MTLSREGRPSGEAYIELESEQDVEVGLQRHNEHIGHRYIEVFKSKRSEMDWVVK------ 95
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
R+ +H + +++ G +RLRGLPF K++I FF + + I +
Sbjct: 96 ----------RSGAHQQ---DSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITL 140
>gi|221483341|gb|EEE21660.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii GT1]
Length = 508
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 94 AKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 152
A H G D+A + +LRLRGLP+SA + I+ FF F ++ + T+ DGRP+GEA
Sbjct: 394 AGPHHGGMDTANWSAQVLRLRGLPYSANEQHIVQFFHGFHMAA-ILPSTIPIDGRPSGEA 452
Query: 153 FVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+V+F +A ++ +A AK+ + R IELFPSS +EM+ A G
Sbjct: 453 YVQFVDAAEALRAFQAKNGGRMDKRMIELFPSSKQEMEFAAQGG 496
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 97/173 (56%), Gaps = 20/173 (11%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
+ + TGEA+ L P + A++ + + +G R++EVFR+ +E+ KA D R +
Sbjct: 90 DKRTTGEAYVQLPDPGLREQAIKDLHGRLLGTRWIEVFRASEEEFQKA------DDRRKT 143
Query: 87 PHRSIPRAKSHDEGKDSA--VHTGILRLRGLPFSAGKDDIMDFFK---DFVLSEDSIHIT 141
+I + + D++ ++ +++LRGLP+S +++I+ FFK F + D + +
Sbjct: 144 VMAAI---SGNTDSLDASRRMNLNVVKLRGLPWSCSENEIVRFFKAEGGFDIHSDDVVLG 200
Query: 142 MNSDGRPTGEAFVEFAN---AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
+ DGR +G AFVE + AE ++ + K M G R+IE++P++ E+M A
Sbjct: 201 VTGDGRLSGIAFVELPSPDVAEKAREVLHKKYM--GRRFIEVYPATREDMQRA 251
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++RLRGLP+ +++++ FFK V L D++ I + D R TGEA+V+ + + A+
Sbjct: 53 VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAI- 111
Query: 168 KD--RMTLGSRYIELFPSSHEEMDEALSR 194
KD LG+R+IE+F +S EE +A R
Sbjct: 112 KDLHGRLLGTRWIEVFRASEEEFQKADDR 140
>gi|159163284|pdb|1WEZ|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleoprotein H'
Length = 102
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAKD
Sbjct: 18 VHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 75
Query: 170 RMTLGSRYIELFPSS 184
+ + RY+ELF +S
Sbjct: 76 KANMQHRYVELFLNS 90
>gi|341877456|gb|EGT33391.1| hypothetical protein CAEBREN_08325 [Caenorhabditis brenneri]
Length = 569
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
+N + G+A + AL+++R+++G RY+EVF + + D
Sbjct: 38 RNGRTCGDATVTFTNEDDYNRALKKDREHLGSRYIEVFP------FDSAPRRRGDRDDYR 91
Query: 87 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
P PR + D I+RLRGLPFS DI DFF + D I +
Sbjct: 92 PRSFPPRDRYSDRAGPRGGLDPIVRLRGLPFSVTIRDINDFFAPLPIVRDGILLPDQQQA 151
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
RP GEA+V F + E + A + +G RYIE+F +S+ E+
Sbjct: 152 RPGGEAYVCFESMESMQIAKQRHMKNIGHRYIEVFEASNREL 193
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
RGLP+ A ++D+ DFF + + +S+ I +GR G+A V F N +D A+ KDR
Sbjct: 9 CRGLPWEATEEDLRDFFGNTGI--ESLDIPKR-NGRTCGDATVTFTNEDDYNRALKKDRE 65
Query: 172 TLGSRYIELFP 182
LGSRYIE+FP
Sbjct: 66 HLGSRYIEVFP 76
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD-GRPTGEAFVEFANAEDSKAAMA 167
+LR+RG+PF A + D+ DFF + + + + + RP+G+A V F N +D A+
Sbjct: 492 VLRMRGVPFRATETDVYDFFH--PIRPNQVELIRDYQFQRPSGDARVIFFNRKDYDDALM 549
Query: 168 KDRMTLGSRYIELFP 182
KD+ +G RYIE+ P
Sbjct: 550 KDKQYMGERYIEMIP 564
>gi|226487868|emb|CAX75599.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 292
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
D + S H+ +R+RGLP+SA K+DI F L +I + N+ RPTGEA V+FA
Sbjct: 112 DHPQSSTGHS--VRMRGLPYSATKEDIDRFLA--PLQPVNIRMRFNAASRPTGEAIVDFA 167
Query: 158 NAEDSKAAMAKDRMTLGSRYIELF 181
+ +++K AM KDR +GSRYIELF
Sbjct: 168 SHDEAKEAMKKDREKIGSRYIELF 191
>gi|76155975|gb|AAX27224.2| SJCHGC06533 protein [Schistosoma japonicum]
Length = 249
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
D + S H+ +R+RGLP+SA K+DI F L +I + N+ RPTGEA V+FA
Sbjct: 69 DHPQSSTGHS--VRMRGLPYSATKEDIDRFLA--PLQPVNIRMRFNAASRPTGEAIVDFA 124
Query: 158 NAEDSKAAMAKDRMTLGSRYIELF 181
+ +++K AM KDR +GSRYIELF
Sbjct: 125 SHDEAKEAMKKDREKIGSRYIELF 148
>gi|226487878|emb|CAX75604.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 292
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
D + S H+ +R+RGLP+SA K+DI F L +I + N+ RPTGEA V+FA
Sbjct: 112 DHPQSSTGHS--VRMRGLPYSATKEDIDRFLA--PLQPVNIRMRFNAASRPTGEAIVDFA 167
Query: 158 NAEDSKAAMAKDRMTLGSRYIELF 181
+ +++K AM KDR +GSRYIELF
Sbjct: 168 SHDEAKEAMKKDREKIGSRYIELF 191
>gi|407866924|gb|EKG08457.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 450
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R+RG+P++A ++ I +FF + +H+ N RPTGEAFVE N D AA+ +
Sbjct: 342 VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQNRPTGEAFVELENDSDLVAALER 401
Query: 169 DRMTLGSRYIELFPSS 184
+ +G+RYIE+F SS
Sbjct: 402 NGGAMGNRYIEVFQSS 417
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 99 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 158
E ++ T +LRLRGLPF++ ++D+ +F + V + I + +GR TG+AF++ A
Sbjct: 140 EQQEQGCKTHVLRLRGLPFTSTEEDLREFVRS-VPGVTRVDICRDMEGRNTGDAFIQLAT 198
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
ED + A T+GSRYIE+ PS+ + D
Sbjct: 199 EEDVEEAKQLHNKTMGSRYIEVLPSTMYDRD 229
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDS 162
+ T ++RL GLP+S ++ I FF +F L E +H T +G G FV ED
Sbjct: 51 IETRVVRLHGLPYSVSEETIRAFFAEFELDEKDPILHFT---EGLHRGTGFVRLKRTEDV 107
Query: 163 KAAMAK-DRMTL-GSRYIELFPSSHEEMDEALSR 194
+ ++ K R + +RY+EL S+ EE L +
Sbjct: 108 EESIKKLHRQHIDANRYVELTASTEEERQRILEQ 141
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
+ ++ N+ TGEAF L + AL+RN MG RY+EVF+S
Sbjct: 373 MVYNEQNRPTGEAFVELENDSDLVAALERNGGAMGNRYIEVFQS 416
>gi|71649626|ref|XP_813529.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma cruzi
strain CL Brener]
gi|70878421|gb|EAN91678.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R+RG+P++A ++ I +FF + +H+ N RPTGEAFVE N D AA+ +
Sbjct: 342 VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQNRPTGEAFVELENDSDLVAALER 401
Query: 169 DRMTLGSRYIELFPSS 184
+ +G+RYIE+F SS
Sbjct: 402 NGGAMGNRYIEVFQSS 417
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 26/159 (16%)
Query: 33 GEAFCVLGYPLQVDFALQR-NRQNM-GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS 90
G F L P V+ ++++ +RQ++ RYVE+ S +E + +
Sbjct: 95 GTGFVRLKRPEDVEESIKKLHRQHIDANRYVELTASTEEERQRIL--------------- 139
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 150
E ++ T +LRLRGLPF++ ++D+ +F + V + I + +GR TG
Sbjct: 140 --------EQQEQGCKTHVLRLRGLPFTSTEEDLREFVRS-VPGVTRVDICRDMEGRNTG 190
Query: 151 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
+AF++ A ED + A T+GSRYIE+ PS+ + D
Sbjct: 191 DAFIQLATEEDVEEAKQLHNKTMGSRYIEVLPSTMYDRD 229
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDS 162
+ T ++RL GLP+S ++ I FF +F L E +H T +G G FV ED
Sbjct: 51 IETRVVRLHGLPYSVSEETIRAFFAEFELDEKDPILHFT---EGLHRGTGFVRLKRPEDV 107
Query: 163 KAAMAK-DRMTL-GSRYIELFPSSHEEMDEALSR 194
+ ++ K R + +RY+EL S+ EE L +
Sbjct: 108 EESIKKLHRQHIDANRYVELTASTEEERQRILEQ 141
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
+ ++ N+ TGEAF L + AL+RN MG RY+EVF+S
Sbjct: 373 MVYNEQNRPTGEAFVELENDSDLVAALERNGGAMGNRYIEVFQS 416
>gi|71425877|ref|XP_813187.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma cruzi
strain CL Brener]
gi|70878047|gb|EAN91336.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 448
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R+RG+P++A ++ I +FF + +H+ N RPTGEAFVE N D AA+ +
Sbjct: 340 VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQNRPTGEAFVELENDSDLVAALER 399
Query: 169 DRMTLGSRYIELFPSS 184
+ +G+RYIE+F SS
Sbjct: 400 NGGAMGNRYIEVFQSS 415
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 26/159 (16%)
Query: 33 GEAFCVLGYPLQVDFALQR-NRQNM-GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS 90
G F L P V+ ++++ +RQ++ RYVE+ S +E + +
Sbjct: 93 GTGFVRLKRPEDVEESIKKLHRQHIDANRYVELTASTEEERQRIL--------------- 137
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 150
E ++ T +LRLRGLPF++ ++D+ +F V + I + +GR TG
Sbjct: 138 --------EQQEQGCKTHVLRLRGLPFTSTEEDLREFVSS-VPGVTRVDICRDMEGRNTG 188
Query: 151 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
+AF++ A ED + A T+GSRYIE+ PS+ + D
Sbjct: 189 DAFIQLATEEDVEEAKQLHNKTMGSRYIEVLPSTMYDRD 227
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDS 162
V T ++RL GLP+S ++ I FF +F L E +H T +G G FV ED
Sbjct: 49 VETRVVRLHGLPYSVSEETIRAFFAEFELDEKDPILHFT---EGLHRGTGFVRLKRPEDV 105
Query: 163 KAAMAK--DRMTLGSRYIELFPSSHEEMDEALSR 194
+ ++ K + +RY+EL S+ EE L +
Sbjct: 106 EESIKKLHRQHIDANRYVELTASTEEERQRILEQ 139
Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
+ ++ N+ TGEAF L + AL+RN MG RY+EVF+S
Sbjct: 371 MVYNEQNRPTGEAFVELENDSDLVAALERNGGAMGNRYIEVFQS 414
>gi|145552659|ref|XP_001462005.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429842|emb|CAK94632.1| unnamed protein product [Paramecium tetraurelia]
Length = 441
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
Query: 18 DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-IA 76
D++ + F +N FTGEA+ + +++ ++ M RY+E+F S EY KA +
Sbjct: 256 DMLTMKF-QQNGLFTGEAYVQVNSIEDLEYLRTFHKSQMDHRYLEIFNSCFDEYNKAQKS 314
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 136
N+ ++ +P + ++E + G+L+LRGLP+S+ + D+ FFK+ +
Sbjct: 315 NQF--LKKINPKITSEVGNINEENEYQCQQQGVLKLRGLPWSSTEQDVRTFFKNNSKIK- 371
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 187
+I + G+ G+ FV N E ++ K + +LGSRYIE+F + E
Sbjct: 372 TIKFLYDDTGKAKGQCFVLVKNLETAEKLKQKYHKKSLGSRYIEVFICNQRE 423
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P+ K + + L++RGLPF K D+++F + L +D + + +G TGE
Sbjct: 212 PQQKDQIQEESKPKQQFYLKIRGLPFQCTKSDLINFLEMPRLKKDMLTMKFQQNGLFTGE 271
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
A+V+ + ED + + + RY+E+F S +E ++A
Sbjct: 272 AYVQVNSIEDLEYLRTFHKSQMDHRYLEIFNSCFDEYNKA 311
>gi|417409638|gb|JAA51317.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 315
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 158 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 215
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 216 AVAAMSKDKNNMQHRYIELFLNS 238
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 124 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
I + + + + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F S
Sbjct: 1 ICPWVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRS 60
Query: 184 SHEEM 188
S E+
Sbjct: 61 SRSEI 65
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 PQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 63
P V+ L + + + VD + TGEAF + AL+++++ +G RY+E+
Sbjct: 3 PWVEGLEIVPNGITLPVDF-----QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 57
Query: 64 FRSKRQE 70
FRS R E
Sbjct: 58 FRSSRSE 64
>gi|417409472|gb|JAA51238.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 300
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 143 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 200
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 201 AVAAMSKDKNNMQHRYIELFLNS 223
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 124 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183
I + + + + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F S
Sbjct: 1 ICPWVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRS 60
Query: 184 SHEEM 188
S E+
Sbjct: 61 SRSEI 65
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 PQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 63
P V+ L + + + VD + TGEAF + AL+++++ +G RY+E+
Sbjct: 3 PWVEGLEIVPNGITLPVDF-----QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 57
Query: 64 FRSKRQE 70
FRS R E
Sbjct: 58 FRSSRSE 64
>gi|7739445|gb|AAF68850.1|AF132362_1 hnRNP 2H9B [Homo sapiens]
gi|7739437|gb|AAF68844.1| hnRNP 2H9B [Homo sapiens]
Length = 297
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 140 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 197
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 198 AVAAMSKDKNNMQHRYIELFLNS 220
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 142 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
M+ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 1 MDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEI 47
>gi|402910822|ref|XP_003918047.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Papio
anubis]
Length = 386
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 232 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 289
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 290 ATHEDAVAAMAKDKANMQHRYVELFLNS 317
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G L +GLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+
Sbjct: 65 GYLGFQGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 124
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 125 KHKERIGHRYIEIFKSSRAEV 145
>gi|351700500|gb|EHB03419.1| Heterogeneous nuclear ribonucleoprotein H3 [Heterocephalus glaber]
Length = 260
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RL GLPF K++I+ FF+ + + I +TM+ GR TGE FV+FA+ E ++ A+
Sbjct: 16 GTVRLLGLPFGCSKEEIVQFFQWLEIMPNGITMTMDYQGRSTGETFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS ++
Sbjct: 76 KHKERIGHRYIEIFRSSRSKI 96
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 66/157 (42%), Gaps = 18/157 (11%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG--GSPHR 89
TGE F + AL ++++ +G RY+E+FRS R S ++G P R
Sbjct: 57 TGETFVQFASKEIAENALGKHKERIGHRYIEIFRSSR-----------SKIKGFYDPPRR 105
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGR 147
+ + D + S G D + + D M DGR
Sbjct: 106 LLGQRLGP---YDRPIGGRGGYYGAGRGSYGGFDDYGGYNSYCYGNDGFGDRMRDGRDGR 162
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
GEA VEF ED AAM+KD+ + RYIELF +S
Sbjct: 163 AKGEADVEFVTHEDPVAAMSKDKNNMQHRYIELFLNS 199
>gi|307110461|gb|EFN58697.1| hypothetical protein CHLNCDRAFT_20050, partial [Chlorella
variabilis]
Length = 81
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFK--DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
+RLRGLPF++ D++ FF+ + V E + T DGRPTGEA+V +AE A+A
Sbjct: 1 VRLRGLPFTSTAQDVLQFFEGVETVGGEAGVVFTCTPDGRPTGEAYVALPDAEALAGAVA 60
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
+ + +G+RYIE+F SS +M
Sbjct: 61 RHKDKIGTRYIEIFESSKGDM 81
>gi|194379882|dbj|BAG58293.1| unnamed protein product [Homo sapiens]
Length = 238
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 81 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 138
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 139 AVAAMSKDKNNMQHRYIELFLNS 161
>gi|119574671|gb|EAW54286.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_e
[Homo sapiens]
Length = 177
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 20 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 77
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 78 AVAAMSKDKNNMQHRYIELFLNS 100
>gi|5911913|emb|CAB55897.1| hypothetical protein [Homo sapiens]
gi|7739441|gb|AAF68848.1| hnRNP 2H9C [Homo sapiens]
gi|119574666|gb|EAW54281.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574669|gb|EAW54284.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574672|gb|EAW54287.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574673|gb|EAW54288.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|193787147|dbj|BAG52353.1| unnamed protein product [Homo sapiens]
Length = 215
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 58 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 115
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 116 AVAAMSKDKNNMQHRYIELFLNS 138
>gi|341879523|gb|EGT35458.1| CBN-HRPF-1 protein [Caenorhabditis brenneri]
Length = 569
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 27 KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
+N + G+A + AL+++R+++G RY+EVF + + D
Sbjct: 38 RNGRTCGDATVTFTNEDDYNRALKKDREHLGSRYIEVFP------FDSAPRRRGDRDDYR 91
Query: 87 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
P PR + D I+RLRGLPFS DI DFF + D I +
Sbjct: 92 PRSFPPRDRYSDRAGPRGGLDPIVRLRGLPFSVTIRDINDFFAPLPIVRDGILLPDQQRA 151
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
RP GEA+V F + E + A + +G RYIE+F +S+ E+
Sbjct: 152 RPGGEAYVCFESMESMQIAKQRHMKNIGHRYIEVFEASNREL 193
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
RGLP+ A ++D+ DFF + + +S+ I +GR G+A V F N +D A+ KDR
Sbjct: 9 CRGLPWEATEEDLRDFFGNTGI--ESLDIPKR-NGRTCGDATVTFTNEDDYNRALKKDRE 65
Query: 172 TLGSRYIELFP 182
LGSRYIE+FP
Sbjct: 66 HLGSRYIEVFP 76
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD-GRPTGEAFVEFANAEDSKAAMA 167
+LR+RG+PF A + D+ DFF + + + + + RP+G+A V F N +D A+
Sbjct: 492 VLRMRGVPFRATETDVYDFFH--PIRPNQVELIRDYQFQRPSGDARVIFFNRKDYDDALM 549
Query: 168 KDRMTLGSRYIELFP 182
KD+ +G RYIE+ P
Sbjct: 550 KDKQYMGERYIEMIP 564
>gi|296480483|tpg|DAA22598.1| TPA: mCG11326-like [Bos taurus]
Length = 290
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 133 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 190
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 191 AVAAMSKDKNNMQHRYIELFLNS 213
>gi|39644691|gb|AAH04511.2| HNRPH3 protein, partial [Homo sapiens]
Length = 207
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 50 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 107
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 108 AVAAMSKDKNNMQHRYIELFLNS 130
>gi|349605437|gb|AEQ00674.1| Heteroproteinous nuclear ribonucleoprotein H3-like protein, partial
[Equus caballus]
Length = 200
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 43 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 100
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 101 AVAAMSKDKNNMQHRYIELFLNS 123
>gi|194389792|dbj|BAG60412.1| unnamed protein product [Homo sapiens]
Length = 355
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 184 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 241
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 242 ATHEDAVAAMAKDKANMQHRYVELFLNS 269
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSK--- 163
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 164 -AAMAKDRMTLGSRYIELFPSSHEEM 188
A+ K + +G RYIE+F SS E+
Sbjct: 72 EKALKKHKERIGHRYIEIFKSSRAEV 97
>gi|159164103|pdb|2DHA|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
Hypothetical Protein Flj201171
Length = 123
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A
Sbjct: 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 84
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ K + LG RYIELF S+ E+ + L+R
Sbjct: 85 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 113
>gi|112491343|pdb|2HGN|A Chain A, Nmr Structure Of The Third Qrrm Domain Of Human Hnrnp F
gi|297787489|pdb|2KG1|A Chain A, Structure Of The Third Qrrm Domain Of Hnrnp F In Complex
With A Agggau G-Tract Rna
Length = 139
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+KD
Sbjct: 49 VHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 106
Query: 170 RMTLGSRYIELFPSS 184
R + RYIELF +S
Sbjct: 107 RANMQHRYIELFLNS 121
>gi|403301377|ref|XP_003941367.1| PREDICTED: G-rich sequence factor 1-like [Saimiri boliviensis
boliviensis]
Length = 291
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 88/207 (42%), Gaps = 43/207 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++ V + FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 77 LNTVAITFVMDYRGRQKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEGRTH 136
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ + SP + I + E AV
Sbjct: 137 VCSHKGKKMASSPTAKYITEPEMVFEEHEVNEDIRSMAAFESEKEIELPQEMPEKLPEAV 196
Query: 106 HTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G + +RGLPF A DI++FF + ITM +S + TGEA V F
Sbjct: 197 DFGTTPCLYFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSRKATGEAEVHFE 252
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ A M KD + RYIELF SS
Sbjct: 253 IHEDAVAVMLKDWSHVHHRYIELFLSS 279
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 113 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRM 171
RGLP+S K DI+DFF L+ +I M+ GR TGEA+V+F E + A+ K R
Sbjct: 59 RGLPYSCNKKDIVDFFAG--LNTVAITFVMDYRGRQKTGEAYVQFEEPEMANQALLKHRE 116
Query: 172 TLGSRYIELFPSSHEE 187
+G+RYIE+FPS E
Sbjct: 117 EIGNRYIEIFPSRRNE 132
>gi|449666027|ref|XP_002162990.2| PREDICTED: probable RNA-binding protein 19-like [Hydra
magnipapillata]
Length = 914
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D + + +++RG+PF + ++++FFK ++ D I N DG+ +G AFV+F ED
Sbjct: 299 DQDIKSMTVKMRGIPFKCSEKEVIEFFKPLII--DDIRFPKNKDGKSSGYAFVDFKTIED 356
Query: 162 SKAAMAKDRMTLGSRYIELFP 182
K+A+ KD+ + RYIELFP
Sbjct: 357 VKSALKKDKQKIQGRYIELFP 377
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 85
+K+ K +G AF V AL++++Q + RY+E+F N++ +++
Sbjct: 338 NKDGKSSGYAFVDFKTIEDVKSALKKDKQKIQGRYIELFP----------VNDLENLKQN 387
Query: 86 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS 144
++ + DE + TG L +R L ++ +D + + F F L E ++ I NS
Sbjct: 388 DFNKKW--TQKGDEADEDISDTGRLFVRNLSYTCTEDSLTNLFSQFGPLVEINLPIDKNS 445
Query: 145 DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDE 190
+ + TG AFV F A+ + AM+K D R + + P +++ E
Sbjct: 446 N-KTTGFAFVTFMMADHAIKAMSKLDGSIFEGRILHILPGKSKKVKE 491
>gi|380806713|gb|AFE75232.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 118
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 26 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 83
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 84 DKANMQHRYVELFLNS 99
>gi|383276062|dbj|BAM09220.1| heterogenous nuclear ribonucleoprotein F, partial [Ursus thibetanus
japonicus]
Length = 150
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 68 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 125
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 126 DRANMQHRYIELFLNS 141
>gi|349605885|gb|AEQ00971.1| Heteroproteinous nuclear ribonucleoprotein H2-like protein, partial
[Equus caballus]
Length = 270
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 99 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 156
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 157 ATHEDAVAAMAKDKANMQHRYVELFLNS 184
>gi|395849855|ref|XP_003797528.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 243
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 118 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 175
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 176 DRANMQHRYIELFLNS 191
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 19/82 (23%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 107
AL+++R++MG +Y+EVF+S R E + + S P + DSA +
Sbjct: 2 ALKKDRESMGHQYIEVFKSHRTEMDWVLKH------------SGPNS------ADSA-ND 42
Query: 108 GILRLRGLPFSAGKDDIMDFFK 129
G +RLRGLPF K++I+ FF
Sbjct: 43 GFVRLRGLPFGCTKEEIVQFFS 64
>gi|449284112|gb|EMC90693.1| Epithelial splicing regulatory protein 1 [Columba livia]
Length = 529
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 6/178 (3%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
VLFV + +++ TG+AF + AL++++ +G+R + V + + + N S
Sbjct: 282 VLFVTYPDSRPTGDAFVLFACEEYAQNALKKHKDLLGKRRLSV--TSLVFCFAQVLNRYS 339
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ +RLRGLP++A +DI++F +F + +
Sbjct: 340 STPLIPLPTPPILPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILEFLGEFSTDIRTHGV 399
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +AE + AA + T+ RY+E+F S EEM+ L G
Sbjct: 400 HMVLNHQGRPSGDAFIQMKSAERAFLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 457
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 25/141 (17%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 203 DLALQRHKHHMGSRYIEVYKATGEDFLKIAGGTSNEVAQFL----------------SKE 246
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+ ++++ FF ++ + D RPTG+AFV FA
Sbjct: 247 NQV---IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACE 303
Query: 160 EDSKAAMAKDRMTLGSRYIEL 180
E ++ A+ K + LG R + +
Sbjct: 304 EYAQNALKKHKDLLGKRRLSV 324
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
+ ++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A
Sbjct: 146 NNAVIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 205
Query: 166 MAKDRMTLGSRYIELFPSSHEEM 188
+ + + +GSRYIE++ ++ E+
Sbjct: 206 LQRHKHHMGSRYIEVYKATGEDF 228
>gi|402580830|gb|EJW74779.1| hypothetical protein WUBG_14313, partial [Wuchereria bancrofti]
Length = 292
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKA 164
T I+RL GLP+ K++I+ FF+ +++ I +T + G+P GEAFV F + E +
Sbjct: 25 ETSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFIDDESASK 84
Query: 165 AMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
A+AK++ + RY++++PSS+ EM AL G
Sbjct: 85 ALAKNKEYIQHRYVDIYPSSYGEMLRALDGG 115
>gi|344252227|gb|EGW08331.1| Heterogeneous nuclear ribonucleoprotein F [Cricetulus griseus]
Length = 185
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 60 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 117
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 118 DRANMQHRYIELFLNS 133
>gi|18605870|gb|AAH23162.1| Hnrpf protein, partial [Mus musculus]
Length = 188
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 63 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 120
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 121 DRANMQHRYIELFLNS 136
>gi|380806715|gb|AFE75233.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 112
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 26 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 83
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 84 DKANMQHRYVELFLNS 99
>gi|444727895|gb|ELW68371.1| Heterogeneous nuclear ribonucleoprotein H2 [Tupaia chinensis]
Length = 236
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF +L+ +HI + DGR TGEA VEF ED+ AAMAK
Sbjct: 89 CVHMRGLPYRATENDIYNFF--LLLNPMRVHIEIGPDGRVTGEADVEFDTHEDAVAAMAK 146
Query: 169 DRMTLGSRYIELFPSS 184
D++ + RY+ELF +S
Sbjct: 147 DKVNMQHRYVELFLNS 162
>gi|358342654|dbj|GAA27695.2| heterogeneous nuclear ribonucleoprotein F/H [Clonorchis sinensis]
Length = 295
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G LRL GLPFS K I FF+ F + +D I + + GRPTGEAFV+F + E ++ A
Sbjct: 13 GTLRLFGLPFSVTKAQIQAFFEGFEIVKDGIGLLTDHHGRPTGEAFVQFVSPEVARLAAG 72
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALSR 194
K + + RY+E+ S+ + ++A+ R
Sbjct: 73 KHKHLIDGRYVEISFSTLKAANQAIER 99
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+R+RGLPF+A +DI+DFF+ + ++ + + +G+P G A V FA ED+K AM +
Sbjct: 220 IRMRGLPFAATVNDILDFFRP--IQPLTVTMRTHKNGKPNGMADVYFATVEDTKEAMKRH 277
Query: 170 RMTLGSRYIELFPSSHE 186
+ +G RYIELF S E
Sbjct: 278 KAPMGFRYIELFSSVQE 294
>gi|194389894|dbj|BAG60463.1| unnamed protein product [Homo sapiens]
Length = 159
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 20 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 77
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 78 DKANMQHRYVELFLNS 93
>gi|237839439|ref|XP_002369017.1| RRM domain-containing protein [Toxoplasma gondii ME49]
gi|211966681|gb|EEB01877.1| RRM domain-containing protein [Toxoplasma gondii ME49]
Length = 513
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 94 AKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 152
A H D+A + +LRLRGLP+SA + I+ FF F ++ + T+ DGRP+GEA
Sbjct: 399 AGPHHGSMDTANWSAQVLRLRGLPYSANEQHIVQFFHGFHMAA-ILPSTIPIDGRPSGEA 457
Query: 153 FVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+V+F +A ++ +A AK+ + R IELFPSS +EM+ A G
Sbjct: 458 YVQFVDAAEALRAFQAKNGGRMDKRMIELFPSSKQEMEFAAQGG 501
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 97/173 (56%), Gaps = 20/173 (11%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 86
+ + TGEA+ L P + A++ + + +G R++EVFR+ +E+ KA D R +
Sbjct: 90 DKRTTGEAYVQLPDPGLREQAIKDLHGRLLGTRWIEVFRASEEEFQKA------DDRRKT 143
Query: 87 PHRSIPRAKSHDEGKDSA--VHTGILRLRGLPFSAGKDDIMDFFK---DFVLSEDSIHIT 141
+I + + D++ ++ +++LRGLP+S +++I+ FFK F + D + +
Sbjct: 144 VMAAI---SGNTDSLDASRRMNLNVVKLRGLPWSCSENEIVRFFKAEGGFDIHSDDVVLG 200
Query: 142 MNSDGRPTGEAFVEFAN---AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
+ DGR +G AFVE + AE ++ + K M G R+IE++P++ E+M A
Sbjct: 201 VTGDGRLSGIAFVELPSPDVAEKAREVLHKKYM--GRRFIEVYPATREDMQRA 251
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++RLRGLP+ +++++ FFK V L D++ I + D R TGEA+V+ + + A+
Sbjct: 53 VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAI- 111
Query: 168 KD--RMTLGSRYIELFPSSHEEMDEALSR 194
KD LG+R+IE+F +S EE +A R
Sbjct: 112 KDLHGRLLGTRWIEVFRASEEEFQKADDR 140
>gi|341899985|gb|EGT55920.1| hypothetical protein CAEBREN_28420 [Caenorhabditis brenneri]
Length = 591
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 31/185 (16%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+ I V FV + GEA+ ++ +R+ M RY+E+F
Sbjct: 88 LTIKRVKFVCTTGRPNGEAYVEFETKEDAGKGMENDRKEMSSRYIEIF------------ 135
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG----ILRLRGLPFSAGKDDIMDFFK--D 130
++P +++ E + G ++RLRG+P+S ++D++ FF D
Sbjct: 136 -------------TVPESEAELEFRPEPDGVGEENHVVRLRGIPWSCKEEDVLQFFAGLD 182
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+E I T RP+GEAFV FA ++ AM + +G+RY+E+F SS E +
Sbjct: 183 PPPAETVIGGTGGPKSRPSGEAFVRFATQAAAEKAMEYNNRHMGTRYVEVFMSSMVEFNR 242
Query: 191 ALSRG 195
A G
Sbjct: 243 AKGGG 247
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+RLRGLPF+A + DI +FF + T GRP GEA+VEF ED+ M D
Sbjct: 67 VRLRGLPFNATEKDIHEFFNGLTIKRVKFVCTT---GRPNGEAYVEFETKEDAGKGMEND 123
Query: 170 RMTLGSRYIELF--PSSHEEMD 189
R + SRYIE+F P S E++
Sbjct: 124 RKEMSSRYIEIFTVPESEAELE 145
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 50/195 (25%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN-------EVSDVRG 84
+GEAF + A++ N ++MG RYVEVF S E+ +A E + +R
Sbjct: 201 SGEAFVRFATQAAAEKAMEYNNRHMGTRYVEVFMSSMVEFNRAKGGGSAAGSYERTGIR- 259
Query: 85 GSPHRSIPRAKS-------------------------HDEGKDSAVHTGI---------- 109
P S+ R+ S D G S G
Sbjct: 260 --PLMSLDRSDSGYGRGGSYGGYGGYDDYSRGAYGGHQDYGYSSYNQGGYGGDYGRSNDD 317
Query: 110 ---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+ +RGLP+ A + + FF L SI + +N GRP+G+A EF + D +A +
Sbjct: 318 PLRIYMRGLPYDADQYAVEAFFS--PLRCHSIKLGVNETGRPSGDAIAEFDSFGDLQAGL 375
Query: 167 AKDRMTLGSRYIELF 181
+++ +G RY+ELF
Sbjct: 376 SRNNQRMGRRYVELF 390
>gi|324509132|gb|ADY43846.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 192
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GE + L V AL+ +R + RY+EVF E + + V +RG
Sbjct: 45 SGECYVELNDNSAVKEALKLDRNEINGRYIEVFTVSEGELAMMVRHGV--IRGSG----- 97
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
E + ++RLRGLP+SA DDI +FFK +++ + I GRP+GE
Sbjct: 98 -------ESESRYASNYVVRLRGLPYSANVDDIKEFFKGLDVAD--VVIDKEQGGRPSGE 148
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRY 177
AFV A+ E ++ A+ + + +GSRY
Sbjct: 149 AFVRLASKEHAELALERSKNNMGSRY 174
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
T +RLRGLPF+A + D+ +F + ++ SI T+ S GR +GE +VE + K A
Sbjct: 4 ETNFIRLRGLPFAAKESDVRNFLQG--ITAKSITFTLTSSGRASGECYVELNDNSAVKEA 61
Query: 166 MAKDRMTLGSRYIELFPSSHEEM 188
+ DR + RYIE+F S E+
Sbjct: 62 LKLDRNEINGRYIEVFTVSEGEL 84
>gi|24646109|ref|NP_731640.1| glorund, isoform C [Drosophila melanogaster]
gi|23171055|gb|AAN13533.1| glorund, isoform C [Drosophila melanogaster]
Length = 179
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAAM 166
+RLRGLP+SA +I+DF ++ ++ S IH +T DG+ TGEA+VE A+ ED + A
Sbjct: 51 VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEAR 110
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 111 KLNKASMGHRYIEVFTATPKEAKEAMRK 138
>gi|341882686|gb|EGT38621.1| hypothetical protein CAEBREN_04314 [Caenorhabditis brenneri]
Length = 591
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 31/185 (16%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+ I V FV + GEA+ ++ +R+ M RY+E+F
Sbjct: 88 LTIKRVKFVCTTGRPNGEAYVEFETKEDAGKGMENDRKEMSSRYIEIF------------ 135
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG----ILRLRGLPFSAGKDDIMDFFK--D 130
++P +++ E + G ++RLRG+P+S ++D++ FF D
Sbjct: 136 -------------TVPESEAELEFRPEPDGVGEENHVVRLRGIPWSCKEEDVLQFFAGLD 182
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+E I T RP+GEAFV FA ++ AM + +G+RY+E+F SS E +
Sbjct: 183 PPPAETVIGGTGGPKSRPSGEAFVRFATQAAAEKAMEYNNRHMGTRYVEVFMSSMVEFNR 242
Query: 191 ALSRG 195
A G
Sbjct: 243 AKGGG 247
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+RLRGLPF+A + DI +FF + T GRP GEA+VEF ED+ M D
Sbjct: 67 VRLRGLPFNATEKDIHEFFNGLTIKRVKFVCTT---GRPNGEAYVEFETKEDAGKGMEND 123
Query: 170 RMTLGSRYIELF--PSSHEEMD 189
R + SRYIE+F P S E++
Sbjct: 124 RKEMSSRYIEIFTVPESEAELE 145
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 50/195 (25%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN-------EVSDVRG 84
+GEAF + A++ N ++MG RYVEVF S E+ +A E + +R
Sbjct: 201 SGEAFVRFATQAAAEKAMEYNNRHMGTRYVEVFMSSMVEFNRAKGGGSAAGSYERTGIR- 259
Query: 85 GSPHRSIPRAKS-------------------------HDEGKDSAVHTGI---------- 109
P S+ R+ S D G S G
Sbjct: 260 --PLMSLDRSDSGYGRGGSYGGYGGYDDYSRGAYGGHQDYGYSSYNQGGYGGDYGRSNDD 317
Query: 110 ---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+ +RGLP+ A + + FF L SI + +N GRP+G+A EF + D +A +
Sbjct: 318 PLRIYMRGLPYDADQYAVEAFFS--PLRCHSIKLGVNETGRPSGDAIAEFDSFGDLQAGL 375
Query: 167 AKDRMTLGSRYIELF 181
+++ +G RY+ELF
Sbjct: 376 SRNNQRMGRRYVELF 390
>gi|432118737|gb|ELK38193.1| Epithelial splicing regulatory protein 1 [Myotis davidii]
Length = 596
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 27/141 (19%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 248 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFL----------------SKE 291
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA
Sbjct: 292 NQV---IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 348
Query: 160 EDSKAAMA--KDRMTLGSRYI 178
E ++ A+ KD + L +++
Sbjct: 349 EYAQNALRKHKDLLVLPQQFV 369
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 377 CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAYLAA 436
Query: 167 AK-DRMTLGSRYIELFPSSHEEMDEALSRG 195
K + T+ RY+E+F S EEM+ L G
Sbjct: 437 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 466
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 194 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 253
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 254 HKHHMGTRYIEVYKATGED 272
>gi|67971142|dbj|BAE01913.1| unnamed protein product [Macaca fascicularis]
Length = 286
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 115 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 172
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 173 ATHEDAVAAMSKDKANMQHRYVELFLNS 200
>gi|148701753|gb|EDL33700.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_c [Mus
musculus]
Length = 288
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 117 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 174
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 175 ATHEDAVAAMSKDKANMQHRYVELFLNS 202
>gi|417409228|gb|JAA51131.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 271
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 112 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 169
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 170 DKANMQHRYVELFLNS 185
>gi|74222440|dbj|BAE38120.1| unnamed protein product [Mus musculus]
Length = 272
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 113 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 170
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 171 DKANMQHRYVELFLNS 186
>gi|365812823|pdb|2LMI|A Chain A, Nmr Structure Of The Protein Bc040485 From Homo Sapiens
Length = 107
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 13 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 72
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 73 EKHRMYMGQRYVEVYEINNEDVD 95
>gi|148701751|gb|EDL33698.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_a [Mus
musculus]
Length = 311
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 117 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 174
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 175 ATHEDAVAAMSKDKANMQHRYVELFLNS 202
>gi|51476543|emb|CAH18256.1| hypothetical protein [Homo sapiens]
Length = 194
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 112 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 169
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 170 DKANMQHRYVELFLNS 185
>gi|417409033|gb|JAA51043.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 251
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 112 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 169
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 170 DKANMQHRYVELFLNS 185
>gi|66361862|ref|XP_627895.1| CG8205/fusilli (animal)- like, 2x RRM domains, involved in RNA
metabolism [Cryptosporidium parvum Iowa II]
gi|46227584|gb|EAK88519.1| CG8205/fusilli (animal)- like, 2x RRM domains, involved in RNA
metabolism [Cryptosporidium parvum Iowa II]
Length = 569
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 93/173 (53%), Gaps = 10/173 (5%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84
+K+ K TGEA+ +L + +L + + MG+R++EV S +E+ I +++ ++
Sbjct: 352 NKDGKMTGEAYVLLPSIKAYELSLTLLHGKRMGKRWIEVLPSSTKEF--LICLQITSLKK 409
Query: 85 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHIT 141
+ + P + ++ D + +LRLRGLP+S + +I+ FF + L+ + +
Sbjct: 410 QNQN---PSIFNDNKIIDRYYNRSVLRLRGLPWSTTEIEIVQFFISGGIYGLNASDVFLG 466
Query: 142 MNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+ + R +GEA++ + D+ A +R +G RYIE+F SS +E+ A S
Sbjct: 467 ITENQRASGEAWIILPHKCDAFDAQRILNRRVIGKRYIEVFISSFQELTTARS 519
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANA---EDSKA 164
++RLRGLP+ A DI+ FF +S I I+ N DG+ TGEA+V + E S
Sbjct: 317 VVRLRGLPWKAAVLDIIAFFNPICRISSYDIAISYNKDGKMTGEAYVLLPSIKAYELSLT 376
Query: 165 AMAKDRMTLGSRYIELFPSSHEEM 188
+ RM G R+IE+ PSS +E
Sbjct: 377 LLHGKRM--GKRWIEVLPSSTKEF 398
>gi|328717324|ref|XP_001952255.2| PREDICTED: hypothetical protein LOC100163028 [Acyrthosiphon pisum]
Length = 819
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 25/163 (15%)
Query: 33 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP 92
G+A+ + + AL+++ + M RY+ VF S R E + I S +
Sbjct: 609 GQAYVDMESEENLKAALKQDGEYMRDRYINVFPSNRSEMEQDIKENGSKL---------- 658
Query: 93 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 152
D+ VH +RGLPF KDDI++FF+ + + I I+ +S GR A
Sbjct: 659 -------DSDNCVH-----IRGLPFDFTKDDIVEFFQGLEMIPNGITISNSSAGRIG--A 704
Query: 153 FVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM-DEALSR 194
FV+F N E+ + A+ K + RYIE+F SS E+ ++AL R
Sbjct: 705 FVQFVNRENVEKALKKHMKKIRQRYIEVFRSSLTEINNQALQR 747
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 109 ILRLRGLPFSAGKDDIMDFF--------KDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
++R+RGL +SA D I+ F KD +H TM ++GRP G+A+V+ + E
Sbjct: 563 VVRMRGLSWSATTDAIIKFLSTSGEAKVKD---GASRVHFTMTTEGRPNGQAYVDMESEE 619
Query: 161 DSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ KAA+ +D + RYI +FPS+ EM++
Sbjct: 620 NLKAALKQDGEYMRDRYINVFPSNRSEMEQ 649
>gi|339253438|ref|XP_003371942.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967723|gb|EFV52113.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 505
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLP+ IM+FF+ E I +DGR TG+AFV A+ ED+
Sbjct: 51 IIRMRGLPYDCTAKRIMEFFESGENGVKVAGGESGIMFVNKADGRATGDAFVLIASEEDA 110
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A++K + +GSRYIELF S+ E+ + +++
Sbjct: 111 QKALSKHKEVIGSRYIELFRSTSAEVQQVINK 142
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 30/201 (14%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN--E 78
++FV+K + + TG+AF ++ AL ++++ +G RY+E+FRS E + I E
Sbjct: 86 IMFVNKADGRATGDAFVLIASEEDAQKALSKHKEVIGSRYIELFRSTSAEVQQVINKSLE 145
Query: 79 VSDV----------RGGSPHR-SIPR---AKSHDEGKDSAVHTGI----LRLRGLPFSAG 120
V+ + G P R +IP + A TG +RLRGLP+ A
Sbjct: 146 VAKIDLNTMPTVGLLGSLPPRGAIPTPVPGQIQPILPPQAFITGCRKDCVRLRGLPYEAE 205
Query: 121 KDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG 174
I++F +F + +H+ N+ G P+GEAF++ +++ + A A DR M G
Sbjct: 206 VQHILEFLGEFSKHIVLQGVHMVYNAQGNPSGEAFIQM-DSDIAAATTAADRHNKYMHTG 264
Query: 175 --SRYIELFPSSHEEMDEALS 193
RYIE+F S ++M+ L+
Sbjct: 265 KKQRYIEVFQCSADDMNLVLA 285
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 87 PHRSIPRAKSH---DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITM 142
P+ S P + ++ G+ + T +L LRGLPF+ D++ FF+ F ++ D IH+
Sbjct: 403 PYPSPPVSPTNYFASPGQANQPPTPVL-LRGLPFNVTPTDVLSFFQGFPEITMDCIHLQR 461
Query: 143 NSDGRPTGEAFVEF-ANAEDSKAAMAKDRMTLGSRYIELF 181
+G+ GEA + F + E +A + R G+R IE+F
Sbjct: 462 APNGQLNGEAIILFQSRMEAERAVIECSRQLFGNRPIEMF 501
>gi|390363422|ref|XP_003730367.1| PREDICTED: uncharacterized protein LOC100888204 [Strongylocentrotus
purpuratus]
Length = 1832
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 14/185 (7%)
Query: 16 LMDI---VDVLFVHKNNK--FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L DI D + +H++++ TG A L P +D AL+R++Q MG+RY++V + E
Sbjct: 603 LRDINIAPDGVQIHRDHRGRITGTANIKLQGPSDIDQALKRHQQYMGKRYIDVRPCLQSE 662
Query: 71 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT--GILRLRGLPFSAGKDDIMDFF 128
+ K +VS S S R++S G++S + + +RGL DI+DFF
Sbjct: 663 WEKE--KQVS-----SAEPSKRRSRSPVRGRNSPLRNCNTCIEMRGLASFTKNSDIVDFF 715
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + +DSI++ N DG +G A++EF + + ++ A K+ R + + S E M
Sbjct: 716 EGLAMRQDSIYLDPNKDGSGSGIAYLEFIDPDMARRACQKNGRQFNRRTVSIRIISKEIM 775
Query: 189 DEALS 193
D ++
Sbjct: 776 DAKIT 780
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
ILRL+GLP++A DI F+ + + +HI G G+ F+ F + ED++ AM +
Sbjct: 3 ILRLQGLPWTATAKDIRQHFEGLSIPDGGVHII----GGEEGDVFIAFGSDEDARKAMQR 58
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ L I L SS EM E ++ R
Sbjct: 59 QKQPLNGGRIMLLLSSKSEMQEVIAESR 86
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 88 HRSIPRAKSHDEGKDSAVHTGIL-RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
H + P H +D+ + +R +P+SA DI FF + IHI +NS+G
Sbjct: 1471 HNTGPLPGPHGRPEDAGTSEYVCAHIRNVPYSARWPDIAHFFSGLQIVPGGIHIMVNSEG 1530
Query: 147 RPTGEAFVEFANAEDSK 163
+PTG F+EFA+A +++
Sbjct: 1531 KPTGHCFIEFADAHNAR 1547
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+RL GLPF + F +D ++ D + I + GR TG A ++ D A+ +
Sbjct: 585 VRLTGLPFDCTDRGVRLFLRDINIAPDGVQIHRDHRGRITGTANIKLQGPSDIDQALKRH 644
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
+ +G RYI++ P E ++
Sbjct: 645 QQYMGKRYIDVRPCLQSEWEK 665
>gi|226487874|emb|CAX75602.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 150
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 15/99 (15%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL---------------SEDSIHITMNSDGRPTGEAF 153
++R+RGLPFSA DDI++FFK ++ + I+ +GR GEAF
Sbjct: 4 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVFTDCTIRGGKRGIYFPQGPNGRSNGEAF 63
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+E + +D + AMA +G RYIE+F S EE++ A+
Sbjct: 64 IELDSKDDKEKAMAHHNEHMGRRYIEVFDSCSEELNNAM 102
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N + GEAF L + A+ + ++MGRRY+EVF S + E+++ G P
Sbjct: 55 NGRSNGEAFIELDSKDDKEKAMAHHNEHMGRRYIEVFDS--------CSEELNNAMGSRP 106
Query: 88 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
S P + H ++RLRGLP+ K +I FF D
Sbjct: 107 FSS-PNRREH-----------VVRLRGLPYDTEKKEIYAFFND 137
>gi|402585392|gb|EJW79332.1| hypothetical protein WUBG_09760 [Wuchereria bancrofti]
Length = 236
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
T +RLRGLPF+A + D+ DF + F L+ SI T+ S+GR +GE +VE + E K
Sbjct: 5 TNYIRLRGLPFAAKEQDVRDFLQVFFFGLNAKSITFTLTSNGRASGECYVELDDQEAVKE 64
Query: 165 AMAKDRMTLGSRYIELFPSSHEEM 188
A DR + RYIE+F S E+
Sbjct: 65 AQKLDRNEINGRYIEVFSVSDAEL 88
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 17/150 (11%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N + +GE + L V A + +R + RY+EVF E I + V GG
Sbjct: 45 NGRASGECYVELDDQEAVKEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGVIKGSGGDA 104
Query: 88 HRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
DS + ++RLRGLP+SA DDI +FF ++ D++ I G
Sbjct: 105 --------------DSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVA-DAV-IDKEPGG 148
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
RP+GEAFV A E ++ A+ + + +GSR
Sbjct: 149 RPSGEAFVRLATKEYAELALERSKNYMGSR 178
>gi|308477529|ref|XP_003100978.1| CRE-HRPF-2 protein [Caenorhabditis remanei]
gi|308264322|gb|EFP08275.1| CRE-HRPF-2 protein [Caenorhabditis remanei]
Length = 621
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 12/183 (6%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVE--VFRSKRQEYYKA 74
+ + V FV + GEA+ A++ +R+ M RY+E K++
Sbjct: 97 LGVKRVKFVCTTGRPNGEAYVEFKTQDDAGKAMENDRKEMSNRYIESEFLIGKQENNSNI 156
Query: 75 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--V 132
+ V+DV G R P +G H ++RLRG+P+S ++DI FF +
Sbjct: 157 LVFSVTDVEGEFEFRPDP------DGNGEENH--VVRLRGIPWSCKEEDINQFFDGLEPL 208
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+E I T RP+GEAFV FA ++AAM + +G+RYIE+F SS E++ A
Sbjct: 209 PAEIVIGGTGGPRSRPSGEAFVRFATQAAAEAAMEYNNRHMGTRYIEVFMSSMVELNRAK 268
Query: 193 SRG 195
G
Sbjct: 269 GGG 271
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+RLRGLPF+A + DI +FF + T GRP GEA+VEF +D+ AM D
Sbjct: 76 VRLRGLPFNATEKDIQEFFSGLGVKRVKFVCTT---GRPNGEAYVEFKTQDDAGKAMEND 132
Query: 170 RMTLGSRYIE 179
R + +RYIE
Sbjct: 133 RKEMSNRYIE 142
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 98 DEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D GK A + + +RGLP+ A I FF L SI + +N GRP+G+A EF
Sbjct: 341 DYGKGGASDEPLRIYMRGLPYDADHYAIEAFFSP--LRCHSIKLGINDTGRPSGDAIAEF 398
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELF 181
+ D +A ++K+ +G RY+ELF
Sbjct: 399 DSYNDLQAGLSKNNQRMGRRYVELF 423
>gi|440804101|gb|ELR24980.1| Znfinger in Ran binding protein [Acanthamoeba castellanii str.
Neff]
Length = 732
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T ++ +RGLP+SA D+ FF + IH+ + GRP+G A+VEF++AE+ A+
Sbjct: 243 TKVIVMRGLPWSATDADVGMFFSGLDIVPGGIHLIHDHTGRPSGVAYVEFSSAEEVNNAL 302
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALS 193
+ +GSRYIE++PS + L+
Sbjct: 303 QRHNGFIGSRYIEVYPSDANSLTAILA 329
>gi|302839324|ref|XP_002951219.1| hypothetical protein VOLCADRAFT_117772 [Volvox carteri f.
nagariensis]
gi|300263548|gb|EFJ47748.1| hypothetical protein VOLCADRAFT_117772 [Volvox carteri f.
nagariensis]
Length = 245
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 73 KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
+A+ + G +P + R + D+ + IL+L+GLP+SA ++DI FF +
Sbjct: 15 QAVGTGANSFPGAAPE--VARQRQADQ------SSAILKLKGLPYSATENDIRQFFAPYE 66
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
L + DGRP+G AF EF + E++ A++K+ +G RY+ L EM+E +
Sbjct: 67 L--KGVSFVYEPDGRPSGLAFAEFVSKEEALKALSKNGEYIGQRYVRLLHVPRAEMEEQV 124
Query: 193 SRG 195
G
Sbjct: 125 RLG 127
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 96/186 (51%), Gaps = 32/186 (17%)
Query: 18 DIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
++ V FV++ + + +G AF + AL +N + +G+RYV + R E +
Sbjct: 66 ELKGVSFVYEPDGRPSGLAFAEFVSKEEALKALSKNGEYIGQRYVRLLHVPRAEMEE--- 122
Query: 77 NEVSDVRGGSPHRSIPRAKS-------HDEGKDSAVH--TGILRL------------RGL 115
VR G+ +IP A + + ++SAV+ TG L+L RGL
Sbjct: 123 ----QVRLGT--LAIPGAAAKLRSRMMRSQQRNSAVYMATGPLQLVPTTATSPTIKIRGL 176
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLG 174
P+ + +I+ FF+ + D++ I ++ GRP+GEA++ F++ +++ +A +R LG
Sbjct: 177 PYGSSPTEILAFFQTYHYLPDTLQIGLDQLGRPSGEAWLSFSSPQEALRAVRDLNRHYLG 236
Query: 175 SRYIEL 180
+RY+EL
Sbjct: 237 TRYLEL 242
>gi|395735012|ref|XP_002814888.2| PREDICTED: G-rich sequence factor 1 [Pongo abelii]
Length = 459
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 152 LIRAQGLPWSCTVEDVLNFFSDCRIRKGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 212 EKHRMYMGQRYVEVYEINNEDVD 234
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ V + +R+N R +V ++ K+ +
Sbjct: 274 LNIVDITFVMDYRGRRKTGEAY--------VYIEIFPSRRNEVRTHVGSYKGKKIASFPT 325
Query: 75 IA-----------NEVS-DVRGGSPHRS-----IPR------AKSHDEGKDSAVHTGILR 111
+EV+ D++ + S +P+ ++ D G S++H +
Sbjct: 326 AKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGATSSLH--FVH 383
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKD 169
+RGLPF A DI++FF + ITM +S G+ TGEA V F ED+ AAM KD
Sbjct: 384 MRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFETHEDAVAAMHKD 439
Query: 170 RMTLGSRYIELFPSS 184
R + RYIELF +S
Sbjct: 440 RSHVYHRYIELFLNS 454
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 44/167 (26%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 185 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 235
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 236 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 283
Query: 143 NSDG-RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ G R TGEA+V YIE+FPS E+
Sbjct: 284 DYRGRRKTGEAYV----------------------YIEIFPSRRNEV 308
>gi|196011702|ref|XP_002115714.1| hypothetical protein TRIADDRAFT_59686 [Trichoplax adhaerens]
gi|190581490|gb|EDV21566.1| hypothetical protein TRIADDRAFT_59686 [Trichoplax adhaerens]
Length = 341
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 72 YKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
Y+ N S V S +P +S E A + ++LRGLPF +++I +FF
Sbjct: 176 YQTTDNTRSKVSNVS-MTQLPNKESDTEDNAPAKNIITIKLRGLPFDVNEEEIKEFFHPT 234
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182
L ++ + N G+P G AFV+F N ED+ AM ++ + +RYIELFP
Sbjct: 235 KL--ENTRLMTNHKGKPNGVAFVDFTNEEDACKAMKSNKDYIRNRYIELFP 283
>gi|222615465|gb|EEE51597.1| hypothetical protein OsJ_32850 [Oryza sativa Japonica Group]
Length = 340
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 35/191 (18%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL------------QRNRQNMGRRYVEVF 64
+DIVD L VHKN +FTGEAF V +Q + + +R R Y V
Sbjct: 107 LDIVDCLLVHKNGRFTGEAFVVFPSAMQAEAMMGGGGVSDGYEGSKRPRMIESNPYFAVT 166
Query: 65 R------SKR-------QEYYKAIANEVSDVRGGSPHRSIPR-AKSHDEGKDSAVHT--G 108
SKR Y+ A+ S GG+ P A G +SA+ G
Sbjct: 167 AGSPLDVSKRARMMEPAPPYFGAMG---SSAAGGTSAFYQPYGANLPGAGANSAIQNFPG 223
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ RLRGLPF D +D FK FV + + ++ +GR TGEAFV F +A ++ A+ +
Sbjct: 224 V-RLRGLPFDC---DDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHR 279
Query: 169 DRMTLGSRYIE 179
+R +G R+ +
Sbjct: 280 NRQNMGRRWYK 290
Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 100 GKDSAVHT--GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
G +SA+ G+ RLRGLPF DI FF + + + ++ +GR TGEAFV F
Sbjct: 75 GANSAIQNFPGV-RLRGLPFDCDDLDICKFFVGLDIVD---CLLVHKNGRFTGEAFVVFP 130
Query: 158 NAEDSKAAMAKDRMTLG 174
+A ++A M ++ G
Sbjct: 131 SAMQAEAMMGGGGVSDG 147
>gi|402583247|gb|EJW77191.1| hypothetical protein WUBG_11899 [Wuchereria bancrofti]
Length = 82
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD----FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
I+R+RGLP+ + I++FF + +++ I SDGRPTG+AFV F N E +
Sbjct: 2 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDNEEAGQK 61
Query: 165 AMAKDRMTLGSRYIELF 181
A+ K + T+G+RYIELF
Sbjct: 62 ALTKHKRTIGTRYIELF 78
>gi|25153681|ref|NP_741422.1| Protein HRPF-2 [Caenorhabditis elegans]
gi|351059337|emb|CCD74180.1| Protein HRPF-2 [Caenorhabditis elegans]
Length = 610
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 95 KSHDEGKDSAVHTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 148
K DE + + +G +RLRGLPF+A + DI +FF + T GRP
Sbjct: 45 KEADESMPTKISSGEPPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTT---GRP 101
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
GEA+VEF N E++ AM DR + +RYIE+F
Sbjct: 102 NGEAYVEFKNTEEAGKAMENDRKEISNRYIEVF 134
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 25/182 (13%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+ I V FV + GEA+ + A++ +R+ + RY+EVF + A
Sbjct: 87 LTIERVKFVCTTGRPNGEAYVEFKNTEEAGKAMENDRKEISNRYIEVFTVE--------A 138
Query: 77 NEVS-DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 135
+E + R P S+ E H ++RLRG+P+S +DD+ FF+
Sbjct: 139 DEAEFEFR--------PDPDSNGE----VNH--VIRLRGVPWSCKEDDVRKFFEGLEPPP 184
Query: 136 DSIHI--TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
I I T RP+GEAFV F + ++ AM + +GSRY+E+F SS E + A
Sbjct: 185 AEIVIGGTGGPRSRPSGEAFVRFTTQDAAEKAMDYNNRHMGSRYVEVFMSSMVEFNRAKG 244
Query: 194 RG 195
G
Sbjct: 245 GG 246
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 97 HDEGKDSAVHTG---ILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
HD+G S G LR +RGLP+ A I FF L S+ I +N GRP+G+
Sbjct: 309 HDQGGRSDYGRGGDDPLRVYMRGLPYDADDHAIAAFFS--PLRCHSVKIGINETGRPSGD 366
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
A EF N D + A++++ +G RY+ELF
Sbjct: 367 AIAEFDNYNDLQVALSRNNQRMGRRYVELF 396
>gi|268536900|ref|XP_002633585.1| Hypothetical protein CBG05462 [Caenorhabditis briggsae]
Length = 588
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 32/174 (18%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
V FV + GEA+ ++ +R+ M RY+E+F
Sbjct: 91 VKFVCTTGRPNGEAYVEFASTDDAGRGMECDRKEMSNRYIEIF----------------- 133
Query: 82 VRGGSPHRSIPRAKSHDEGKDSAVHTG----ILRLRGLPFSAGKDDIMDFFKDFVLSEDS 137
S+P ++ +E + A G ++RLRG+P+S ++D+ FF+
Sbjct: 134 --------SVPISEGENEFRPDADGNGEENHVVRLRGVPWSCKEEDVKQFFQGLEPPPAE 185
Query: 138 IHI--TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
I I T RP+GEAFV F + +K AM + M +G+RY+E+F SS E++
Sbjct: 186 IVIGGTSGPRPRPSGEAFVRFTSQAAAK-AMEYNNMHMGTRYVEVFMSSMVELN 238
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
+++ + +RLRGLPF+A + DI +FF ++ T GRP GEA+VEFA+ +D+
Sbjct: 58 ASLKSQFVRLRGLPFNATEKDIHEFFTGLIVKRVKFVCTT---GRPNGEAYVEFASTDDA 114
Query: 163 KAAMAKDRMTLGSRYIELF 181
M DR + +RYIE+F
Sbjct: 115 GRGMECDRKEMSNRYIEIF 133
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+ A I FF + SI + +N GR +G+A EF + +D ++ +A++
Sbjct: 329 IYMRGLPYDADHHAIEAFFSPLRV--HSIKLGINEAGRSSGDAIAEFDSYQDLQSGLARN 386
Query: 170 RMTLGSRYIELF 181
+G RY+ELF
Sbjct: 387 NQRMGRRYVELF 398
>gi|324501689|gb|ADY40749.1| Heterogeneous nuclear ribonucleoprotein H2 [Ascaris suum]
Length = 152
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+++ RGLP+S +++I FF+ S I +T N D RP+GEAFV F N ED + A+ +
Sbjct: 56 VVKCRGLPWSCTEEEIRIFFQPADRSIVKITLTKNRDARPSGEAFVAFNNNEDYEYALTR 115
Query: 169 DRMTLGSRYIELF 181
D+ +G RYIE++
Sbjct: 116 DKQHMGKRYIEVW 128
>gi|397502356|ref|XP_003821827.1| PREDICTED: epithelial splicing regulatory protein 1 [Pan paniscus]
Length = 268
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAM 166
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + AA
Sbjct: 38 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 97
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRG 195
+ + RY+E+F S EEM+ L G
Sbjct: 98 KCHKKNMKDRYVEVFQCSAEEMNFVLMGG 126
>gi|84043632|ref|XP_951606.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma brucei
TREU927]
gi|33348520|gb|AAQ15845.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|62359177|gb|AAX79621.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
brucei]
Length = 487
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 32/167 (19%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGR-RYVEVFRSKRQEYYKAIANEV 79
V FV ++ TG F L A+ R +RQN+ RYVE+ S +E + +
Sbjct: 56 VFFVEGLHRGTG--FVRLRNAEDAALAINRLHRQNIDETRYVEISTSSEEERQRIM---- 109
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDS 137
E ++ + +LRLRGLPF+A +DD+ F + VLS
Sbjct: 110 -------------------EQQEQSNKACVLRLRGLPFAATEDDVRTFIESMEGVLS--- 147
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
I I + DGR TG+AF+E A+ ED K +G+RYIE+ PS+
Sbjct: 148 IDICRDMDGRNTGDAFIELASEEDVKRVKLLHSKAMGNRYIEVLPST 194
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R+RG+P+SA ++ I +FF + +H+ + R TGEAFVE + D A+ +
Sbjct: 387 VVRIRGVPYSASEEAIAEFFAGVKIPPQGVHMVYDERNRLTGEAFVEVEDRNDVLLALDR 446
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE+F SS M
Sbjct: 447 NGAMMGTRYIEVFESSPAAM 466
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+LRL GLP+S ++ I +FF F L+ D I +G G FV NAED AA+
Sbjct: 23 AAVLRLYGLPYSIKEEKIREFFGSFSLA-DEEPIVFFVEGLHRGTGFVRLRNAED--AAL 79
Query: 167 AKDRMTLG----SRYIELFPSSHEE 187
A +R+ +RY+E+ SS EE
Sbjct: 80 AINRLHRQNIDETRYVEISTSSEEE 104
>gi|94536671|ref|NP_001035439.1| uncharacterized protein LOC678601 [Danio rerio]
gi|92096562|gb|AAI15345.1| Zgc:136953 [Danio rerio]
gi|190338538|gb|AAI63730.1| Zgc:136953 [Danio rerio]
Length = 209
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 102 DSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
+S H+G + +RGLPF A + D+ FF L+ +HI M +G+ TGEA VEF + E
Sbjct: 96 NSGFHSGHFVHMRGLPFRATESDVAHFFGP--LTPVRVHIDMGPNGKSTGEADVEFRSHE 153
Query: 161 DSKAAMAKDRMTLGSRYIELFPSS 184
D+ +AM+KD+ + RYIELF +S
Sbjct: 154 DAVSAMSKDKNHMQHRYIELFLNS 177
>gi|261326510|emb|CBH09471.1| heterogeneous nuclear ribonucleoprotein H/F,putative [Trypanosoma
brucei gambiense DAL972]
Length = 488
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 32/167 (19%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGR-RYVEVFRSKRQEYYKAIANEV 79
V FV ++ TG F L A+ R +RQN+ RYVE+ S +E + +
Sbjct: 57 VFFVEGLHRGTG--FVRLRNAEDAALAINRLHRQNIDETRYVEISTSSEEERQRIM---- 110
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDS 137
E ++ + +LRLRGLPF+A +DD+ F + VLS
Sbjct: 111 -------------------EQQEQSNKVCVLRLRGLPFAATEDDVRTFIESMEGVLS--- 148
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
I I + DGR TG+AF+E A+ ED K +G+RYIE+ PS+
Sbjct: 149 IDICRDMDGRNTGDAFIELASEEDVKRVKLLHSKAMGNRYIEVLPST 195
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R+RG+P+SA ++ I +FF + +H+ + R TGEAFVE + D A+ +
Sbjct: 388 VVRIRGVPYSASEEAIAEFFAGVKIPPQGVHMVYDERNRLTGEAFVEVEDRNDVLLALDR 447
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE+F SS M
Sbjct: 448 NGAMMGTRYIEVFESSPAAM 467
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+LRL GLP+S ++ I +FF F L+ D I +G G FV NAED AA+
Sbjct: 24 AAVLRLYGLPYSIKEEKIREFFGSFSLA-DEEPIVFFVEGLHRGTGFVRLRNAED--AAL 80
Query: 167 AKDRMTLG----SRYIELFPSSHEE 187
A +R+ +RY+E+ SS EE
Sbjct: 81 AINRLHRQNIDETRYVEISTSSEEE 105
>gi|281203425|gb|EFA77625.1| hypothetical protein PPL_12232 [Polysphondylium pallidum PN500]
Length = 1794
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T I+RLRGLP++ D++ FF + +S ++I I + +GR TGE FVEF E + +A+
Sbjct: 1248 TKIVRLRGLPYNVTPADVISFFSGYAISGNNILIEKDYNGRVTGEGFVEFVTFETASSAL 1307
Query: 167 AK-DRMTLGSRYIELFP 182
+ SRYIELFP
Sbjct: 1308 KHLQHKAISSRYIELFP 1324
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RG+P+S + I DFFK + + I I MNS G+ +GEA++EF + + ++ A R
Sbjct: 1155 IRGMPWSTNEGQIRDFFKPVPIMPNGITILMNSHGKQSGEAYIEFVDEDAARKANDYHRK 1214
Query: 172 TLGSRYIELFP 182
+ RYIE+ P
Sbjct: 1215 MMRHRYIEVLP 1225
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++LRGLP+SA +D I DFF ++ I + GRP+G A+V ++ D A+ ++
Sbjct: 1721 VKLRGLPYSATEDSIADFFDGLGVTNIKI---IYQRGRPSGLAYVSLSSQYDYDQALKRN 1777
Query: 170 RMTLGSRYI 178
+ +GS +
Sbjct: 1778 KNHMGSSVV 1786
>gi|345325737|ref|XP_003430953.1| PREDICTED: G-rich sequence factor 1-like [Ornithorhynchus anatinus]
Length = 224
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAM 166
+R+RGLPF A DI++FF + ITM +S G+ TGEA V F + ED+ AAM
Sbjct: 146 FVRMRGLPFQANAQDIVNFFSPL----KPVRITMEYSSSGKATGEADVHFESHEDAVAAM 201
Query: 167 AKDRMTLGSRYIELF 181
AKDR + RYIELF
Sbjct: 202 AKDRSHVQHRYIELF 216
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
KS AV+ G++RLRGLP+ + D++DFF
Sbjct: 25 KSLQAKSSPAVNDGVVRLRGLPYGCSEKDVVDFF 58
>gi|343470599|emb|CCD16749.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 473
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R+RG PFSA ++ I +FF + +H+ N R TGEAFVE + +D A+ K
Sbjct: 373 VVRIRGAPFSATEEAIAEFFSGVRIPTQGVHMVYNEQNRLTGEAFVEVESKDDVLLALRK 432
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE+F SS M
Sbjct: 433 NGGMMGTRYIEVFESSPAAM 452
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 31/139 (22%)
Query: 50 QRNRQNMGR-RYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 108
Q NR+++ RY+E+ S +E +AI + E A+
Sbjct: 74 QLNRRHIDESRYIEISYSSEEELQRAIGQQ--------------------EQSSKAL--- 110
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANAEDSKAA 165
+LRLRGLPF + DD+ K F+ S D I + + DGR G+AF+E A+ E
Sbjct: 111 VLRLRGLPFLSTADDV----KAFIESMDGVLRIDMCRDMDGRCAGDAFIELASEEGVARI 166
Query: 166 MAKDRMTLGSRYIELFPSS 184
+ +G+RYIE+ PS+
Sbjct: 167 KTLHKKMMGARYIEVLPST 185
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T +LRL GLP+S +D I DFF DF L+++ I +G G F+ NA D+ +
Sbjct: 14 TTVLRLHGLPYSIEEDKIRDFFSDFNLADEDA-IVFFVEGLHRGTGFIRLRNAGDAPLVI 72
Query: 167 AK--DRMTLGSRYIELFPSSHEEMDEALSR 194
+ R SRYIE+ SS EE+ A+ +
Sbjct: 73 RQLNRRHIDESRYIEISYSSEEELQRAIGQ 102
>gi|47226618|emb|CAG07777.1| unnamed protein product [Tetraodon nigroviridis]
Length = 183
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I++++GLP+S DD++ FF + + + IH+T+N GRP+G AF+E + ED A+
Sbjct: 7 IVQVKGLPWSCTADDLLKFFSECRIRDGVKGIHLTVNRMGRPSGRAFIEMEHEEDVNKAL 66
Query: 167 AKDRMTLGSRYIE 179
K R LG RY+E
Sbjct: 67 EKHRQYLGPRYVE 79
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 29/152 (19%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L V++ + +G AF + + V+ AL+++RQ +G RYVE
Sbjct: 40 LTVNRMGRPSGRAFIEMEHEEDVNKALEKHRQYLGPRYVE-------------------- 79
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
G SP ++ ++ + A I++ A DD + FF +S+ + I
Sbjct: 80 -GLSPPKAASTCYMYEVTERDA--EAIIKKAA---EAQADDGV-FFSPLPVSK--MLIEF 130
Query: 143 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 174
DGRP+GEA V F +D+ AAM++DR +G
Sbjct: 131 GPDGRPSGEADVYFTRHQDAVAAMSRDRQHIG 162
>gi|328715828|ref|XP_001946054.2| PREDICTED: hypothetical protein LOC100165002 [Acyrthosiphon pisum]
Length = 1148
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G V + L + GLP + DI FF D VL D IHI ++ GRPTGE++ EF A
Sbjct: 888 GATPVVRSNCLYVYGLPTTVTNTDITQFFSDSVLP-DKIHIMLSKFGRPTGESYCEFGTA 946
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + AA+ K++ +G + + P + M +A+++
Sbjct: 947 QQASAAIVKNQTFMGQNLVCVEPINRSLMIQAITK 981
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +F+ + E +HI G G+ F+ F+ ED++ AM
Sbjct: 4 IIRLQNLPWAANAADIRQYFQGLSIPEGGVHIV----GGEKGDVFISFSTDEDARQAMLS 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + I L SS EM + + R
Sbjct: 60 DGGCIKDVQIRLLLSSRNEMQKVIDAAR 87
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++ L +P+ A I+DFF+ F L ++ N G+PTGEA V N +D+ A+
Sbjct: 1073 VVALDNVPYRADVQQIVDFFEGFELHSQNVIRRFNDFGKPTGEARVNLRNPQDAARAV 1130
>gi|307179523|gb|EFN67837.1| RNA-binding protein 12 [Camponotus floridanus]
Length = 873
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
T + +RGLPF DI DFF D + IH+ +N G+P GE F EF +AE ++ A
Sbjct: 635 QTDCILMRGLPFQTIDRDIFDFFSDIGIVPLCIHMMLNQQGKPAGECFCEFDSAEKAERA 694
Query: 166 MAKDRMTLGSRY--IELFP 182
+AK+ + LG IEL P
Sbjct: 695 IAKNGLPLGKNVPTIELVP 713
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+L L +PF A ++I++FF DF + +++ N G PTG+A V F++ +++ A+
Sbjct: 798 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFSSPSEAQRAL 855
>gi|209880052|ref|XP_002141466.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209557072|gb|EEA07117.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 626
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 92/177 (51%), Gaps = 29/177 (16%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQN-MGRRYVEVFRS---------KRQEYYKAIAN 77
+N+ +GEA+ VL + + + N MG+R++EV S K E ++ +++
Sbjct: 343 DNRMSGEAYVVLSSKDDMKVCISQLHGNRMGKRWIEVLPSSYGDFLECKKSNEIFQKLSD 402
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF---VLS 134
++ + S P E V+ +LRLRGLP+S + +I+ FF+ +S
Sbjct: 403 KIRFL-------SNPLLDQDSE----YVNRPVLRLRGLPWSTTEFEIVQFFETAGVRNIS 451
Query: 135 EDSIHITMNSDGRPTGEAFV---EFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
D++ + ++ RP+GEA V E+ N + + + +R +G RYIE+F SS++E+
Sbjct: 452 VDNVFLGYTTNSRPSGEACVVLPEWCNLNEVQRVL--NRRVIGKRYIEVFISSYQEV 506
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 20/179 (11%)
Query: 20 VDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQR--NRQNMGRRYVEVFRSKRQEYYKAI 75
VD +F+ N++ +GEA VL ++ +QR NR+ +G+RY+EVF S QE +
Sbjct: 452 VDNVFLGYTTNSRPSGEACVVLPEWCNLN-EVQRVLNRRVIGKRYIEVFISSYQEVHSFK 510
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 135
+ +S +G S H I R + LR++GL F + D + FF ++
Sbjct: 511 KSAMSLNKGKSRH--IQR------------NFDTLRVKGLHFCNTEADFVSFFGGCQVTA 556
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALS 193
+ S + G+ +++FA ED+ KA +K+ + + +Y+ELFP+ EE A++
Sbjct: 557 IVPITSGISSTKQFGQFYIKFATHEDAYKALKSKNFVLIEDQYVELFPAKEEEFRNAVN 615
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 20/93 (21%)
Query: 109 ILRLRGLPFSAGKDDIMDF--------FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
++RLRGLP+ DI F FK+ ++S SD R +GEA+V ++ +
Sbjct: 306 VIRLRGLPWKTNIGDIALFLSPVCNVPFKNIIMS-------YGSDNRMSGEAYVVLSSKD 358
Query: 161 DSKAAMAK---DRMTLGSRYIELFPSSHEEMDE 190
D K +++ +RM G R+IE+ PSS+ + E
Sbjct: 359 DMKVCISQLHGNRM--GKRWIEVLPSSYGDFLE 389
>gi|405977012|gb|EKC41485.1| Dual specificity mitogen-activated protein kinase kinase 5
[Crassostrea gigas]
Length = 672
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 22/146 (15%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 107
A + N + +G RY+E+ E +D + P + P + ++G
Sbjct: 76 AKKYNLREIGNRYIEIL-------------EETDFKRIYPGYTPPTPQ--EKGT------ 114
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
+++L+GLPF K DI FF F ++ I + TGEA+V+FA+ E ++ A+
Sbjct: 115 -LVKLKGLPFGCTKQDIATFFSGFEIAPHGIMKPVKRHASLTGEAYVKFASKEIAEKALT 173
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALS 193
+ +GSRYI ++P+ E+D +S
Sbjct: 174 RHNEYMGSRYINVYPTDALEVDHKMS 199
Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 17/88 (19%)
Query: 110 LRLRGLPFSAGKDDIMDFFK--------DFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
+ LRGLP+ A D++ FFK D + +D +H+ R G FV+ N +D
Sbjct: 18 IMLRGLPYKATAADVLRFFKVPVMFVDVDVLGGKDGVHL----HARTMGTCFVDI-NKQD 72
Query: 162 SKAAMAKDRMTLGSRYIELFPSSHEEMD 189
A + +G+RYIE+ EE D
Sbjct: 73 LAKAKKYNLREIGNRYIEIL----EETD 96
>gi|47218706|emb|CAG05678.1| unnamed protein product [Tetraodon nigroviridis]
Length = 488
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 14/93 (15%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFV--------------LSEDSIHITMNSDGRPTGEAFVE 155
LRLRGLPF K++I+ FF + + + I + ++ GR TGEAFV+
Sbjct: 21 LRLRGLPFGCSKEEIVQFFSVSIPTSVSMCAWVEGLRIVPNGITLPVDYQGRSTGEAFVQ 80
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 81 FASKEIAEKALGKHKERIGHRYIEIFKSSRNEI 113
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 106 HTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
H+G + +RGLPF A ++DI FF L+ +HI +G+ TGEA VEF + ED+ A
Sbjct: 357 HSGHFVHMRGLPFRATENDIAKFFSP--LNPLRVHIDFAPNGKSTGEADVEFRSHEDAVA 414
Query: 165 AMAKDR 170
AM+KD+
Sbjct: 415 AMSKDK 420
>gi|427788569|gb|JAA59736.1| Putative rna-binding protein [Rhipicephalus pulchellus]
Length = 1004
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 17 MDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA- 74
++++D+L H ++ + TG AF G + A+ R+ +G RY+E+ R Y A
Sbjct: 549 LNVLDILVEHDRSGRATGMAFVEFGDKRDFETAMSMQRRKIGHRYIELSVGSRDAMYAAR 608
Query: 75 --------------------IANEVSDVRG-----GSPHRSI--PRAKSHDEGKD--SAV 105
+ + V RG G H P A +H G
Sbjct: 609 NGDNIRPDGMPVGRRDEEPPVGHGVGPDRGPDVGHGPMHGPGMGPAAPAHGAGHVLVPPG 668
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
HT + L GLP + DI DFF + +IHI + ++G PTG AF EFA D + A
Sbjct: 669 HTCVSML-GLPNTVTDRDIADFFSIQGVIPRAIHIMLGANGVPTGHAFAEFATHADCERA 727
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALS 193
+D LG I L + E+ +AL
Sbjct: 728 FLQDGANLGPHVIALKTIPYSEVAQALG 755
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ ++GLP++ + D++ FF + + I + + GR TG AFVEF + D + AM+
Sbjct: 527 VVVMKGLPYNTSEQDVLQFFSGLNVLD--ILVEHDRSGRATGMAFVEFGDKRDFETAMSM 584
Query: 169 DRMTLGSRYIELFPSSHEEM 188
R +G RYIEL S + M
Sbjct: 585 QRRKIGHRYIELSVGSRDAM 604
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +F+ + E +HI G G+AF+ F + ED++ AM +
Sbjct: 4 IIRLQNLPWAANSLDIRRYFQGLNIPEGGVHIV----GGEKGDAFIAFGSDEDARQAMER 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEVRIKLLLSSRAEMQRIIDQAR 87
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 83 RGGS-PHRSIP--RAKSHDE------GKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 132
RGG P R P RA H+E G DS G ++ +P+ AG +DI++FF+ F
Sbjct: 893 RGGPLPDRGGPLLRAPRHEEPPLPPRGMDSFGKPGCVVTATNIPYRAGVEDIINFFQGFE 952
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
L++ ++ N G+ TG+A + F D++ A+AK
Sbjct: 953 LTKANVMRRFNDRGQATGDARIAFPTPRDAQEALAK 988
>gi|334327209|ref|XP_001378263.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Monodelphis domestica]
Length = 231
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 84 GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 143
G S HR + D VH +RGLP+ ++DI +FF F + HI +
Sbjct: 72 GMSDHRYGDGGSTFQRTTDHCVH-----MRGLPYRVTENDIYNFFSPFNPVRE--HIEIG 124
Query: 144 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
DGR TGE VEFA ED+ AAM+KD+ + RY++LF +S
Sbjct: 125 PDGRVTGEVDVEFATHEDAVAAMSKDKANMQHRYVKLFLNS 165
>gi|300122335|emb|CBK22907.2| unnamed protein product [Blastocystis hominis]
Length = 546
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSED-----SIHITMNSDGRPTGEAFVEFANAEDSKA 164
L+LRGLP++A K++I FF + D +I I ++ RP+GEAFV F++ EDS
Sbjct: 436 LKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNKQRPSGEAFVTFSSVEDSAK 495
Query: 165 AMAKDRMTLGSRYIELFP 182
+ LG RYIE+FP
Sbjct: 496 GLEYHLKNLGKRYIEIFP 513
>gi|427788565|gb|JAA59734.1| Putative rna-binding protein [Rhipicephalus pulchellus]
Length = 1011
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 17 MDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA- 74
++++D+L H ++ + TG AF G + A+ R+ +G RY+E+ R Y A
Sbjct: 549 LNVLDILVEHDRSGRATGMAFVEFGDKRDFETAMSMQRRKIGHRYIELSVGSRDAMYAAR 608
Query: 75 --------------------IANEVSDVRG-----GSPHRSI--PRAKSHDEGKD--SAV 105
+ + V RG G H P A +H G
Sbjct: 609 NGDNIRPDGMPVGRRDEEPPVGHGVGPDRGPDVGHGPMHGPGMGPAAPAHGAGHVLVPPG 668
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
HT + L GLP + DI DFF + +IHI + ++G PTG AF EFA D + A
Sbjct: 669 HTCVSML-GLPNTVTDRDIADFFSIQGVIPRAIHIMLGANGVPTGHAFAEFATHADCERA 727
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALS 193
+D LG I L + E+ +AL
Sbjct: 728 FLQDGANLGPHVIALKTIPYSEVAQALG 755
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ ++GLP++ + D++ FF + + I + + GR TG AFVEF + D + AM+
Sbjct: 527 VVVMKGLPYNTSEQDVLQFFSGLNVLD--ILVEHDRSGRATGMAFVEFGDKRDFETAMSM 584
Query: 169 DRMTLGSRYIELFPSSHEEM 188
R +G RYIEL S + M
Sbjct: 585 QRRKIGHRYIELSVGSRDAM 604
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +F+ + E +HI G G+AF+ F + ED++ AM +
Sbjct: 4 IIRLQNLPWAANSLDIRRYFQGLNIPEGGVHIV----GGEKGDAFIAFGSDEDARQAMER 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEVRIKLLLSSRAEMQRIIDQAR 87
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 83 RGGS-PHRSIP--RAKSHDE------GKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 132
RGG P R P RA H+E G DS G ++ +P+ AG +DI++FF+ F
Sbjct: 900 RGGPLPDRGGPLLRAPRHEEPPLPPRGMDSFGKPGCVVTATNIPYRAGVEDIINFFQGFE 959
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
L++ ++ N G+ TG+A + F D++ A+AK
Sbjct: 960 LTKANVMRRFNDRGQATGDARIAFPTPRDAQEALAK 995
>gi|149052455|gb|EDM04272.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_a [Rattus
norvegicus]
Length = 96
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIE 179
KDR T+G RY+E
Sbjct: 72 KKDRETMGHRYVE 84
>gi|395530818|ref|XP_003767484.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Sarcophilus harrisii]
Length = 344
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLP+ A +DI FF L +HI + DG+ TGEA V+F ED+ AAMAK+
Sbjct: 191 VHMRGLPYKATVNDIYHFFSP--LCPLRVHIEIGQDGKATGEADVDFVTHEDAVAAMAKE 248
Query: 170 RMTLGSRYIELF 181
+ + RYIELF
Sbjct: 249 KTYMQHRYIELF 260
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G+L +RGLPF K+ I FF + + I + M+ G+ TG A V+FA+ E ++ A+
Sbjct: 19 GLLCIRGLPFGCTKETIRHFFSELEMVPSGIILPMDFQGKSTGTALVQFASQEAAEIAIR 78
Query: 168 KDR 170
K +
Sbjct: 79 KHK 81
>gi|449016117|dbj|BAM79519.1| similar to heterogeneous nuclear ribonucleoprotein H3, isoform a
[Cyanidioschyzon merolae strain 10D]
Length = 642
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 21/107 (19%)
Query: 109 ILRLRGLPFSAGKDDIMDFFK----------DFVLSED-----------SIHITMNSDGR 147
++RLRGLP+SA D+ ++ + D L ED I N GR
Sbjct: 313 VVRLRGLPWSATTRDVAEWIRQPPAKATMGADSSLLEDFIRRPLQVLPGGIVFVYNHQGR 372
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
TGE FV+FA+ ED+ + K +G RYIE+F SSH++M LSR
Sbjct: 373 KTGEVFVQFASPEDASRCLHKHEDRMGHRYIEVFLSSHQDMWNLLSR 419
>gi|308453513|ref|XP_003089469.1| hypothetical protein CRE_14401 [Caenorhabditis remanei]
gi|308240262|gb|EFO84214.1| hypothetical protein CRE_14401 [Caenorhabditis remanei]
Length = 264
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVE--VFRSKRQEYYKA 74
+ + V FV + GEA+ A++ +R+ M RY+E K++
Sbjct: 97 LGVKRVKFVCTTGRPNGEAYVEFKTQDDAGKAMENDRKEMSNRYIESEFLIGKQENNSNI 156
Query: 75 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--V 132
+ V+DV G R P +G H ++RLRG+P+S ++DI FF +
Sbjct: 157 LVFSVTDVEGEFEFRPDP------DGNGEENH--VVRLRGIPWSCKEEDINQFFDGLEPL 208
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185
+E I T RP+GEAFV FA ++AAM + +G+R++ L +SH
Sbjct: 209 PAEIVIGGTGGPRSRPSGEAFVRFATQAAAEAAMEYNNRHMGTRWVSLVMASH 261
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+RLRGLPF+A + DI +FF + T GRP GEA+VEF +D+ AM D
Sbjct: 76 VRLRGLPFNATEKDIQEFFSGLGVKRVKFVCTT---GRPNGEAYVEFKTQDDAGKAMEND 132
Query: 170 RMTLGSRYIE 179
R + +RYIE
Sbjct: 133 RKEMSNRYIE 142
>gi|290977130|ref|XP_002671291.1| predicted protein [Naegleria gruberi]
gi|284084859|gb|EFC38547.1| predicted protein [Naegleria gruberi]
Length = 666
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
N K TGE F Q+ A +RN++ + RY+E+F S E + +
Sbjct: 315 NGKRTGEVFVEFTCHDQMLQAAKRNKEKIRNRYIELFHSSISELRASQYYIQQQQQQNYF 374
Query: 88 ---HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 144
H + PR G + I+++ GLP S +++I + F LSE IH+
Sbjct: 375 PYQHITRPRIS----GVQNRKSNFIVKIEGLPTSFEENEIAELFNGLSLSEAGIHLIFGE 430
Query: 145 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
D TGEAFVEF N E A+ ++ T+ S
Sbjct: 431 DECSTGEAFVEFVNEESFAKALEQNDTTISS 461
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 38/189 (20%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAI 75
MDI+ L ++ K TGEA+ +++ A + +++N+G RY+E+F+S +E +
Sbjct: 191 MDII--LMLNYFGKSTGEAYVRFESEEELEKARKTMDKKNLGSRYIEIFKSTIEEMEHS- 247
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS- 134
R + R + ++ IL++R +PFSA +D+I FF ++
Sbjct: 248 ------------RRVLER------NLKNLNNSKILKMRNVPFSATEDEIETFFSGLTIAT 289
Query: 135 -------EDS-------IHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179
E S ++ +N +G+ TGE FVEF + A +++ + +RYIE
Sbjct: 290 VQSRNQAEQSNETRRRKVYFVLNPMNGKRTGEVFVEFTCHDQMLQAAKRNKEKIRNRYIE 349
Query: 180 LFPSSHEEM 188
LF SS E+
Sbjct: 350 LFHSSISEL 358
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDGRPTGEAFVEF-ANAEDSKAAMA 167
L++RGLPFS+ + +I +FF + EDSI M+ R TG ++ F E +AA
Sbjct: 587 LKMRGLPFSSTEKEIAEFFAGYDFEEDSIRFKMDFKRNRQTGICYIRFRTKTEAERAANE 646
Query: 168 KDRMTLGSRYIELF 181
++R +G RYIELF
Sbjct: 647 RNRCNIGDRYIELF 660
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 138 IHITMNSDGRPTGEAFVEFANAED-SKAAMAKDRMTLGSRYIELFPSSHEEMD 189
I + +N G+ TGEA+V F + E+ KA D+ LGSRYIE+F S+ EEM+
Sbjct: 193 IILMLNYFGKSTGEAYVRFESEEELEKARKTMDKKNLGSRYIEIFKSTIEEME 245
>gi|242022416|ref|XP_002431636.1| RNA-binding protein, putative [Pediculus humanus corporis]
gi|212516944|gb|EEB18898.1| RNA-binding protein, putative [Pediculus humanus corporis]
Length = 966
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
GKD T +L ++ LP A DI DFF D L + IH+ +++ G+P+G+AF EF++
Sbjct: 776 GKDVNKSTCVL-MKNLPLEANDRDICDFFSDIGLVPNKIHLMLDTSGQPSGDAFCEFSDL 834
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
++ A K+ LG + + EM EAL
Sbjct: 835 NQAEKACTKNSAHLGKNIVSVTKVHQSEMMEAL 867
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP+SA DI +F+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLPWSANSLDIRHYFRGLSIPEGGVHIV----GGEMGDAFIAFSTDEDARQAMML 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ I L SS EM + + R
Sbjct: 60 AGGKIKEVQISLMLSSRSEMQKIIEAAR 87
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L + + + +G+AFC Q + A +N ++G+ V V + + E +A+ ++
Sbjct: 815 LMLDTSGQPSGDAFCEFSDLNQAEKACTKNSAHLGKNIVSVTKVHQSEMMEALGVSKNE- 873
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK-DFVLSEDSIHIT 141
IP + G+ V T L +PF A DI++FF + L+E I
Sbjct: 874 -----KNKIP-SLMESFGRPQCVVT----LENIPFRAEIFDIINFFGWSYNLTESDIFRR 923
Query: 142 MNSDGRPTGEAFVEFANAEDSKAAM 166
N G+PTG+ V F ED+ A+
Sbjct: 924 YNDKGQPTGDGKVCFKTPEDALRAI 948
>gi|395754533|ref|XP_003779794.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Pongo abelii]
Length = 440
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ + GLP+ A ++DI +FF +HI + DGR TGEA VEF ED+ AAM+K
Sbjct: 281 CVHMCGLPYRATENDIYNFFX--TAQSWRVHIVIGPDGRVTGEANVEFVTXEDAVAAMSK 338
Query: 169 DRMTLGSRYIELF 181
D+ RY+ELF
Sbjct: 339 DKANTHHRYVELF 351
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 28/159 (17%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
+GE F L +V A +++++ +G RYV VF+S E + +
Sbjct: 54 SGETFAEL-ESXEVKSARKKDKETIGHRYVSVFKSNNVEMDGVLKHS------------- 99
Query: 92 PRAKSHDEGKDSAV--HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 149
G DS+V + G + LPF K++I+ FF + + I + ++ GR T
Sbjct: 100 --------GPDSSVMANDGFV----LPFECSKEEIVQFFSWLEIVPNGITLMVDFQGRST 147
Query: 150 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
GEAFV++A+ E ++ + K + + YI++F SS E+
Sbjct: 148 GEAFVQYASQEIAENVLEKHKERIRHMYIKIFKSSRAEV 186
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I++++ P S + + FF + + + IH + +GRP+GE F E + E K+A
Sbjct: 12 IMKVQRXPXSCPANKVQGFFSECKIXNKAQRIHFIYSREGRPSGETFAELESXE-VKSAR 70
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KD+ T+G RY+ +F S++ EMD L
Sbjct: 71 KKDKETIGHRYVSVFKSNNVEMDGVL 96
>gi|300120417|emb|CBK19971.2| unnamed protein product [Blastocystis hominis]
Length = 378
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDG--RPTGEAFVEFANAEDSK 163
L+LRGLP++A K++I FF + D+ + I + D RP+GEAFV F++ EDS
Sbjct: 258 TLKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNLQRPSGEAFVTFSSVEDSA 317
Query: 164 AAMAKDRMTLGSRYIELFP 182
+ LG RYIE+FP
Sbjct: 318 KGLEYHLKNLGKRYIEIFP 336
>gi|332022470|gb|EGI62777.1| RNA-binding protein 12 [Acromyrmex echinatior]
Length = 883
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
S T + +RGLPF DI DFF D + IH+ +N G+P GE F EF +AE +
Sbjct: 642 SMNQTDCVLMRGLPFQTIDRDIFDFFSDIGIVPLCIHMMLNQQGKPAGECFCEFDSAEKA 701
Query: 163 KAAMAKDRMTLGSRY--IELFP 182
+ A+ K+ + LG IEL P
Sbjct: 702 ERAITKNGLPLGKNIPTIELVP 723
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+L L +PF A ++I++FF DF + +++ N G PTG+A V F++ +++ A+
Sbjct: 808 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFSSPSEAQRAL 865
>gi|322790727|gb|EFZ15471.1| hypothetical protein SINV_06272 [Solenopsis invicta]
Length = 933
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
S T + +RGLPF DI DFF D + IH+ +N G+P GE F EF +AE +
Sbjct: 688 SINQTDCILMRGLPFQTIDRDIFDFFSDIGIVPLCIHMMLNQQGKPAGECFCEFDSAEKA 747
Query: 163 KAAMAKDRMTLGSRY--IELFP 182
+ A+ K+ + LG IEL P
Sbjct: 748 ERAITKNGLPLGKNIPTIELVP 769
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 19/107 (17%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT-------------------MNSDGRPT 149
I+RL+ L +SA DI FF+ + E +HI S G T
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIVGGELGDAFIAFSERLLARLATSGGNLT 63
Query: 150 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
+F F+ ED++ AM D + I+L SS EM + + R
Sbjct: 64 DMSFCYFSTDEDARQAMMHDGGKIKEMKIKLLLSSRTEMQKVIEAAR 110
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+L L +PF A ++I++FF DF + +++ N G PTG+A V F++ +++ A+
Sbjct: 858 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFSSPSEAQRAL 915
>gi|334321772|ref|XP_001372905.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 362
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 89 RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 148
R IP + D +A + +RGLP+ A +DI FF L +HI + DG+
Sbjct: 192 RRIPNNRFGDFIFHNATCHHWVHMRGLPYKATVNDIYHFFSP--LCPLRVHIEIGEDGKA 249
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
TGEA V+F ED+ AAM K++ + RYIELF
Sbjct: 250 TGEADVDFVTHEDAVAAMVKEKTYMQHRYIELF 282
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G+L +RGLPF K+ I FF I + ++ G+ TG A V+FA+ E ++ A+
Sbjct: 41 GLLCIRGLPFGCNKETIRHFFSGLETVPSGIILPVDFQGKSTGTALVQFASQEAAEIAIR 100
Query: 168 KDRMTLGSRYIE 179
K + RY+E
Sbjct: 101 KHKGRPEPRYLE 112
>gi|167535939|ref|XP_001749642.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771790|gb|EDQ85451.1| predicted protein [Monosiga brevicollis MX1]
Length = 948
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 24/177 (13%)
Query: 15 QLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
Q++D++ L + + G+A ++ P AL++N+ R V
Sbjct: 596 QVLDVM--LECNPEGRCEGKACVLVCTPEDARLALEKNKTEFKGRSV------------- 640
Query: 75 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 134
D+ G+ K + + + T + RLRGLP+S +DD+ DF + ++
Sbjct: 641 ------DIEMGTADTWNDLLKWYQDQLLRSTDTLVARLRGLPWSCSRDDVYDFLQPSGIN 694
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDSKA---AMAKDRMTLGSRYIELFPSSHEEM 188
+++ + +GRPTG A+ F+ + S+ AM + + +G RYIE+ S+ EM
Sbjct: 695 ANNVFVCHALNGRPTGTAYAVFSGSTASQCFDLAMRQHKSKIGDRYIEVNRSTVAEM 751
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 24/155 (15%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 85
++ K GEA+ ++G P A R+ +G RY+EVF Q YY+A
Sbjct: 512 NRQGKPIGEAYFIMGSPEAAQAAFARSGAMLGDRYIEVFVESPQTYYRA----------- 560
Query: 86 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 145
RA S D DS L + GLP K D+ +F + + + + N +
Sbjct: 561 -------RALSKDAANDSQ----YLSVHGLPLDTTKHDLEEFMAPAQVLD--VMLECNPE 607
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180
GR G+A V ED++ A+ K++ R +++
Sbjct: 608 GRCEGKACVLVCTPEDARLALEKNKTEFKGRSVDI 642
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RLRGL + +++ + + DS I N G+P GEA+ + E ++AA A+
Sbjct: 478 VIRLRGLKWEWAAKEVLPMLEGLDVQADSGFICYNRQGKPIGEAYFIMGSPEAAQAAFAR 537
Query: 169 DRMTLGSRYIELFPSSHE 186
LG RYIE+F S +
Sbjct: 538 SGAMLGDRYIEVFVESPQ 555
>gi|339253436|ref|XP_003371941.1| RNA-binding protein 35B [Trichinella spiralis]
gi|316967724|gb|EFV52114.1| RNA-binding protein 35B [Trichinella spiralis]
Length = 564
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 101 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
+D + ++R RGLP+ + D+ FF ++ + + ++ GR GEA V F NAE
Sbjct: 385 QDVVESSTVIRARGLPWQSSDQDVARFFVGLNIARGGVALCLSPQGRRNGEALVRFENAE 444
Query: 161 DSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ A+ + R +GSRYIE++ S+ E+
Sbjct: 445 HRELALKRHRHFMGSRYIEVYRSTGEDF 472
>gi|301632397|ref|XP_002945272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like, partial
[Xenopus (Silurana) tropicalis]
Length = 218
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 94 AKSHDEGKD--SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 150
A+++ G D + H+G + +RGLPF A + DI +FF L+ +HI + +DGR TG
Sbjct: 138 AQAYGGGADGTTGFHSGHFVHMRGLPFRATESDIANFFSP--LTPIRVHIDVGADGRATG 195
Query: 151 EAFVEFANAEDSKAAMAKDRMTL 173
EA VEFA ED+ AAM+KD+ +
Sbjct: 196 EADVEFATHEDAVAAMSKDKNNM 218
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ I +T++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 6 NGITLTVDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSSRSEI 58
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
L V + TGEAF + AL ++++ +G RY+E+F+S R E
Sbjct: 9 TLTVDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSSRSE 57
>gi|260797907|ref|XP_002593942.1| hypothetical protein BRAFLDRAFT_234856 [Branchiostoma floridae]
gi|229279174|gb|EEN49953.1| hypothetical protein BRAFLDRAFT_234856 [Branchiostoma floridae]
Length = 678
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS--PHRSIPRAKSHDEGKDSAV 105
AL+ +++ MG RY+EV + + K I + + GS P + K D +
Sbjct: 359 ALRMHKKYMGSRYIEVTSAPSTDMQKHIQKFHTKPKKGSKSPGKEAKTTKELDPRAKCCM 418
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
H + LP+ A K +I +FF ++E IH+ G +GE FVEF + D A
Sbjct: 419 H-----VWNLPYKASKREIENFFTGSTIAERGIHMVYTKTGEFSGEVFVEFVSISDCDRA 473
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
LG R L P S EEM + ++R
Sbjct: 474 YKLRAKRLGGRMALLRPISREEMRDRMAR 502
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP+SA DI FF + + +HI G G+AF+ FA+ ED++ AMA+
Sbjct: 4 VIRLQGLPWSASAMDIRSFFSGLTIPDGGVHIV----GGDAGDAFIIFASDEDARQAMAR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ I L+ SS +EM + ++ R
Sbjct: 60 TGNTIHGSPITLYLSSRKEMQDRINMSR 87
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
PR++S + DS + L+GLP++A D+ DFFK + + I DG+ G
Sbjct: 293 PRSRSPIDRTDSMC----ISLKGLPYTAKDKDVRDFFKGLGIRKVWIDF---EDGKAIGS 345
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
FVEF + D KAA+ + +GSRYIE+ + +M + + +
Sbjct: 346 GFVEFKSYGDQKAALRMHKKYMGSRYIEVTSAPSTDMQKHIQK 388
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
I+ ++ LP +A ++I+DFF + + +DS+HI + G PTG A V F +D+ A
Sbjct: 603 IVGIQNLPMTATMEEILDFFYGYPVLKDSVHIHRSDRGDPTGNASVAFPTPQDAMIA 659
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++L GL + +I F ++ D I I M+ G TG+AFV+F + D AA+
Sbjct: 152 IQLFGLNTNVTVSEIHSLFSGLEIASDGIVIEMDPFGNKTGKAFVKFKSVRDCSAAVRTY 211
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
+ L +R+IE+ + + A
Sbjct: 212 KEYLAARHIEVMSCTESQWQIA 233
>gi|213514986|ref|NP_001135185.1| Heterogeneous nuclear ribonucleoprotein H3 [Salmo salar]
gi|209149642|gb|ACI32984.1| Heterogeneous nuclear ribonucleoprotein H3 [Salmo salar]
Length = 204
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +RGLPF A + DI +FF L+ +HI +G+ TGEA VEF + ED+ +AM+KD
Sbjct: 100 VHMRGLPFRATEGDIANFFS--PLTPVRVHIDFGPNGKSTGEADVEFRSHEDAVSAMSKD 157
Query: 170 RMTLGSRYIELFPSS 184
+ + RYIELF +S
Sbjct: 158 KNHMQHRYIELFLNS 172
>gi|74355899|gb|AAI03655.1| Grsf1 protein, partial [Rattus norvegicus]
Length = 142
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGE 151
A++ D G ++H + +RGLPF A DI++FF + ITM +S G+ TGE
Sbjct: 51 AEAVDFGAVPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGE 104
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A V F ED+ AAM KDR + RYIELF +S
Sbjct: 105 ADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 137
>gi|350396590|ref|XP_003484604.1| PREDICTED: hypothetical protein LOC100745803 [Bombus impatiens]
Length = 885
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RGLPF DI+DFF D + IH+ +N +G+P GE F EF A+++ A AK+ +
Sbjct: 655 MRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQNGKPAGECFCEFDTADEALRATAKNGL 714
Query: 172 TLGSRY--IELFP 182
G IEL P
Sbjct: 715 PFGKNVPTIELVP 727
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+L L +PF A ++I++FF DF + +++ N G PTG+A V FA+ +++ A+
Sbjct: 810 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 867
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 57 GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLP 116
GRR F+S ++ N +D +G +RS + S+ + +R +P
Sbjct: 405 GRRNPHAFQSNNSQF-----NFDNDRQG---NRSSTNSSRFSNENKSSGGGHCVEVRNMP 456
Query: 117 FSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
SA +D+ F+ + +D + + ++ G G A+V+F+ AE + A+ R GS
Sbjct: 457 LSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFSKAEGKELALGTTRFVRGS 515
>gi|340716874|ref|XP_003396916.1| PREDICTED: hypothetical protein LOC100648364 [Bombus terrestris]
Length = 885
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RGLPF DI+DFF D + IH+ +N +G+P GE F EF A+++ A AK+ +
Sbjct: 655 MRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQNGKPAGECFCEFDTADEALRATAKNGL 714
Query: 172 TLGSRY--IELFP 182
G IEL P
Sbjct: 715 PFGKNVPTIELVP 727
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+L L +PF A ++I++FF DF + +++ N G PTG+A V FA+ +++ A+
Sbjct: 810 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 867
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 57 GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLP 116
GRR F+S ++ N +D +G +RS + S + +R +P
Sbjct: 405 GRRNPHAFQSNSSQF-----NFDNDRQG---NRSSTNSSRFSNENKSGGGGHCVEVRNMP 456
Query: 117 FSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
SA +D+ F+ + +D + + ++ G G A+V+F+ AE + A+ R GS
Sbjct: 457 LSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFSKAEGKELALGTTRFVRGS 515
>gi|291232395|ref|XP_002736145.1| PREDICTED: RNA binding motif protein 12-like [Saccoglossus
kowalevskii]
Length = 983
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+RL+GLPFS+ ++I FF + D I I+ +S G+ TG+ FV+F N D + A+ +
Sbjct: 470 CVRLQGLPFSSSDENIKKFFAGLEIDRDGIRISTDSFGKRTGDGFVKFRNQMDHQEALKR 529
Query: 169 DRMTLGSRYIELFP 182
+G+RYI++ P
Sbjct: 530 SMKYMGTRYIKVIP 543
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ LRGLPF I DFFK + E++I + +N G G +VEF D + A+A+
Sbjct: 596 CVSLRGLPFVTNTSHIFDFFKGLDVPEENIFLEVNEKGNCKGAGYVEFKTVHDFRKALAR 655
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+R +G+R++ + + E+M
Sbjct: 656 NRQYIGTRFVTVMAIAKEDM 675
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T I+RL+GLP++A D+ FFK + + +HI G +G+AF+ F E+++ AM
Sbjct: 2 TIIIRLQGLPWAASALDVRHFFKGLTIPDGGVHIV----GGESGDAFIAFGGDEEARKAM 57
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
L I L SS EM ++ R
Sbjct: 58 LITNQPLCGSKITLMLSSKSEMQNVIAASR 87
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 27/197 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDF--ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+F+ N K + + + DF AL RNRQ +G R+V V +++ I + +
Sbjct: 625 IFLEVNEKGNCKGAGYVEFKTVHDFRKALARNRQYIGTRFVTVMAIAKEDMKAQIRSHPN 684
Query: 81 DVRGGSPHRSIPRAKSHDE-----------GKDSAVHTG--------------ILRLRGL 115
+R S + P + D+ KD G +R++ +
Sbjct: 685 WMRTVSQMSTAPATPTSDDKKLPLEDKIEPPKDDVKEKGSSENAPKSITDEGTCIRMKNI 744
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
P+++ + +I+ F + I T N G T EA++EF + ED+K A A++ +
Sbjct: 745 PYASNRGEILHFLSGIAIVHQGIERTYNEKGLHTDEAYIEFYSVEDAKRAEARNEGKIRD 804
Query: 176 RYIELFPSSHEEMDEAL 192
R I + S EM + L
Sbjct: 805 RTIYITRVSKSEMLQRL 821
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 115 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT-L 173
+P+SA DI++FF + + DS+ I N GRPTG+A V F ++ A+ T +
Sbjct: 914 IPYSATIPDILNFFNGYGVLPDSVRIHFNDAGRPTGDALVAFDGPHEANRALRDLNNTFM 973
Query: 174 GSRYIELF 181
G R ++L+
Sbjct: 974 GPRKVQLY 981
>gi|156082065|ref|XP_001608525.1| RNA binding protein [Plasmodium vivax Sal-1]
gi|148801096|gb|EDL42501.1| RNA binding protein, putative [Plasmodium vivax]
Length = 181
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 86 SPHRSIPRAKS-HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITM 142
SP +S+ R S + ++ V+ L+LRGLPF A +++I FFK+F L++ IHI
Sbjct: 53 SPTQSVRRFFSDYQHVQEEKVNLPRLKLRGLPFDASEEEIKTFFKNFQLAKVGYPIHIIR 112
Query: 143 NSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELF 181
+PTG+A V F + E++ KA +R L +RYIE++
Sbjct: 113 GVKNKPTGQAHVYFDDEEEARKACETLNRKFLRNRYIEIY 152
>gi|390332535|ref|XP_001184447.2| PREDICTED: probable RNA-binding protein 19-like [Strongylocentrotus
purpuratus]
Length = 513
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 73 KAIANEVSDVRGGSPHRSIPRAKSHDEG------KDSAVHTG--ILRLRGLPFSAGKDDI 124
KA+ EV +V + R + + KD G +++RG+PF+ ++D+
Sbjct: 329 KAVQTEVKEVPNVKASPTTERVRKNKVKLMRSVRKDEKYERGDFTIKMRGVPFNVKEEDV 388
Query: 125 MDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
+ FF LS +I +N G+ TG FVEFA+ +D AM ++R +G RY+ELF
Sbjct: 389 VKFFAP--LSMKTIRAPLNEKGQRTGVIFVEFASEDDITKAMKRNREYMGRRYVELF 443
>gi|221054023|ref|XP_002261759.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193808219|emb|CAQ38922.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 163
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 12/109 (11%)
Query: 85 GSPHR---SIPRAK------SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 135
G+P R IP K + ++ V+ L+LRGLPF G+++I FFK+F L++
Sbjct: 26 GTPLRELQKIPTQKFRRFFSEYQHVQEEKVNLPRLKLRGLPFDVGEEEIKSFFKNFQLAK 85
Query: 136 --DSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELF 181
IHI +PTG+A V F + E++ KA +R L +RYIE++
Sbjct: 86 VGYPIHIIRGVKNKPTGQAHVYFDDEEEARKACETLNRKFLRNRYIEIY 134
>gi|301609832|ref|XP_002934459.1| PREDICTED: RNA-binding protein 12B-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 683
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HIT G GEAF+ FA ED++ AM++
Sbjct: 28 VIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHIT----GGKIGEAFIIFATDEDARRAMSR 83
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ IELF SS EM L R
Sbjct: 84 SGGFIKKSRIELFLSSKAEMQHTLEMNR 111
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G + L GLP++AG+ D+ +FF F + + +H ++ +G G A+V+F + +D++AA++
Sbjct: 181 GYVFLYGLPYTAGELDVKEFFHGFNVVD--LHFSVRQNGVRDGNAYVKFGSVQDAQAALS 238
Query: 168 KDRMTLGSRYI 178
+D +G RYI
Sbjct: 239 RDNEYIGHRYI 249
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 17 MDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
++VD+ F V +N G A+ G AL R+ + +G RY+ V Q++ +A
Sbjct: 204 FNVVDLHFSVRQNGVRDGNAYVKFGSVQDAQAALSRDNEYIGHRYICVKLCNEQKWIEAG 263
Query: 76 ANEVSDVRGGSPHRS---IPR--AKSHDEGKDSAVHTG----------ILRLRGLPFSAG 120
+D R S ++ PR +K+H + +H L L + +S
Sbjct: 264 G--PTDERNESVRKNRQWSPRFPSKNHSRSRSPKIHRTRSRSPHNQQFYLHLLNMSYSVQ 321
Query: 121 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180
K DI FF D + + I + ++ +G T E FV N + + + + L R + +
Sbjct: 322 KTDIKLFFGDPDIPDTQIKLLLDRNGVQTREGFVLIKNEKFYQKCLGLHKGLLNGREVWV 381
Query: 181 FPSSHEEMDEAL 192
+P + ++M E +
Sbjct: 382 YPIARKDMLELI 393
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ LR PF+ K ++ FF F + E I + +S G GEA V F + + A +
Sbjct: 425 MYLRNFPFNVSKSEVQKFFAGFPVDEQDIFLLYDSRGVGLGEALVTFPSEHQAILAEGLN 484
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
+ + L S E+M E
Sbjct: 485 QQKFLGTEVLLRRISEEQMKE 505
>gi|124802582|ref|XP_001347519.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23495101|gb|AAN35432.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 160
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSK-AAM 166
L+LRGLPF A +++I +FF+DF L++ + IHI +PTG A+V F + E+++ A
Sbjct: 57 LKLRGLPFDASEEEIKNFFRDFQLTKQAYPIHIIKGIKNKPTGHAYVYFDDEEEARNACQ 116
Query: 167 AKDRMTLGSRYIELF 181
A +R + R++E++
Sbjct: 117 AMNRKYIRDRFVEIY 131
>gi|301609834|ref|XP_002934460.1| PREDICTED: RNA-binding protein 12B-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 659
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HIT G GEAF+ FA ED++ AM++
Sbjct: 4 VIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHIT----GGKIGEAFIIFATDEDARRAMSR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ IELF SS EM L R
Sbjct: 60 SGGFIKKSRIELFLSSKAEMQHTLEMNR 87
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G + L GLP++AG+ D+ +FF F + + +H ++ +G G A+V+F + +D++AA++
Sbjct: 157 GYVFLYGLPYTAGELDVKEFFHGFNVVD--LHFSVRQNGVRDGNAYVKFGSVQDAQAALS 214
Query: 168 KDRMTLGSRYI 178
+D +G RYI
Sbjct: 215 RDNEYIGHRYI 225
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 17 MDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
++VD+ F V +N G A+ G AL R+ + +G RY+ V Q++ +A
Sbjct: 180 FNVVDLHFSVRQNGVRDGNAYVKFGSVQDAQAALSRDNEYIGHRYICVKLCNEQKWIEAG 239
Query: 76 ANEVSDVRGGSPHRS---IPR--AKSHDEGKDSAVHTG----------ILRLRGLPFSAG 120
+D R S ++ PR +K+H + +H L L + +S
Sbjct: 240 G--PTDERNESVRKNRQWSPRFPSKNHSRSRSPKIHRTRSRSPHNQQFYLHLLNMSYSVQ 297
Query: 121 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180
K DI FF D + + I + ++ +G T E FV N + + + + L R + +
Sbjct: 298 KTDIKLFFGDPDIPDTQIKLLLDRNGVQTREGFVLIKNEKFYQKCLGLHKGLLNGREVWV 357
Query: 181 FPSSHEEMDEAL 192
+P + ++M E +
Sbjct: 358 YPIARKDMLELI 369
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ LR PF+ K ++ FF F + E I + +S G GEA V F + + A +
Sbjct: 401 MYLRNFPFNVSKSEVQKFFAGFPVDEQDIFLLYDSRGVGLGEALVTFPSEHQAILAEGLN 460
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
+ + L S E+M E
Sbjct: 461 QQKFLGTEVLLRRISEEQMKE 481
>gi|241999526|ref|XP_002434406.1| RNA-binding protein, putative [Ixodes scapularis]
gi|215497736|gb|EEC07230.1| RNA-binding protein, putative [Ixodes scapularis]
Length = 1026
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 18/191 (9%)
Query: 17 MDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
++I+D+ H N + TG F D A+ +R+ MG RY+E+ R + +
Sbjct: 656 LNILDLFVEHDHNGRATGTGFVEFASKRDFDAAMNMHRRKMGHRYIELTVGTRDSMH--L 713
Query: 76 ANEVSDVRGGSP-------------HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKD 122
A VR P H IP A G HT + L GLP +
Sbjct: 714 ARNADGVRPDGPAVPPRTREEEAPHHSPIPPAP-LGHGSVPLAHTCVSML-GLPDTVTDR 771
Query: 123 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182
DI DFF + +IHI + ++G PTG AF EFA D + A K+ +LG I L
Sbjct: 772 DIADFFSTQGVIPRAIHIMLGANGVPTGHAFAEFAAHADCERAFLKNGASLGPHTITLKT 831
Query: 183 SSHEEMDEALS 193
+ E+ +AL
Sbjct: 832 IPYSEVAQALG 842
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ ++GLP+S + D++ FF + + + + + +GR TG FVEFA+ D AAM
Sbjct: 634 VVVMKGLPYSCSETDVLQFFSGLNILD--LFVEHDHNGRATGTGFVEFASKRDFDAAMNM 691
Query: 169 DRMTLGSRYIELFPSSHEEM 188
R +G RYIEL + + M
Sbjct: 692 HRRKMGHRYIELTVGTRDSM 711
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R++ LP++A DI +F+ + E +HI G G+AF+ F+ ED++ AM +
Sbjct: 4 IIRMQNLPWAANSLDIRRYFQGLGIPEGGVHIV----GGDKGDAFIAFSTDEDARQAMER 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + I+L SS EM + + R
Sbjct: 60 DAGKIKEVRIKLLLSSRAEMQRVIDQAR 87
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 115 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+PF AG DDI+ FF F L+++ + + G+PTG+A + FA+ +++ A+AK
Sbjct: 957 IPFRAGVDDIIAFFHGFDLTKEKVMRRFSDRGQPTGDARIAFASPREAQEALAK 1010
>gi|74214262|dbj|BAE40375.1| unnamed protein product [Mus musculus]
Length = 512
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK 329
>gi|194747277|ref|XP_001956079.1| GF25026 [Drosophila ananassae]
gi|190623361|gb|EDV38885.1| GF25026 [Drosophila ananassae]
Length = 1037
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLAIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ +R +PF A DI+ FF D+ LS D I N DG+PTG+ V F + ++++A
Sbjct: 962 VVAMRNVPFKAELKDILRFFGDYKLSPDDIIRRFNDDGKPTGDTRVAFESPAEARSAYES 1021
Query: 169 DR 170
R
Sbjct: 1022 RR 1023
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T +R+ L S DI +F+ + + I I M +G TG A+VEF+ ++ A+
Sbjct: 378 TCYIRMNSLCPSTSYSDIRKYFQGLYIPHNGIKI-MQVNGNRTGVAYVEFSRVSSAQKAL 436
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ R I++ P EE ++A R
Sbjct: 437 QRNNTMFRDRQIQITPVGDEEFEQAEER 464
>gi|195021602|ref|XP_001985427.1| GH14505 [Drosophila grimshawi]
gi|193898909|gb|EDV97775.1| GH14505 [Drosophila grimshawi]
Length = 1049
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLAIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEVQVRLLLSSRAEMQKVIETAR 87
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ +R +PF A DI+ FF D+ LS D I N DG+PTG+A V F + ++++A
Sbjct: 974 VVAMRNVPFKADLKDILRFFSDYKLSPDDIIRRFNDDGKPTGDARVAFESVVEARSAFES 1033
Query: 169 DR 170
R
Sbjct: 1034 RR 1035
>gi|428185555|gb|EKX54407.1| hypothetical protein GUITHDRAFT_99887 [Guillardia theta CCMP2712]
Length = 1076
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 113 RGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
RGLPFS+ +DDI+ FF + L + I +++ RP+GEA V+ + ED AA++ +R
Sbjct: 693 RGLPFSSTEDDIVTFFGECKNLEAGDVSILLDARQRPSGEATVKLRSVEDLHAALSCNRN 752
Query: 172 TLGSRYIELF 181
+G RY+E+F
Sbjct: 753 MMGERYVEVF 762
>gi|195439718|ref|XP_002067706.1| GK12567 [Drosophila willistoni]
gi|194163791|gb|EDW78692.1| GK12567 [Drosophila willistoni]
Length = 1092
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEVQVRLLLSSRAEMQKVIETAR 87
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 106 HTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
H G ++ +R +PF A DI+ FF D+ LS I N DG+PTG+A V F N ++++
Sbjct: 1013 HPGCVVAMRNVPFKADLKDILRFFNDYKLSPHDIIRRFNDDGKPTGDARVAFENPSEARS 1072
Query: 165 AMAKDR 170
A R
Sbjct: 1073 AFESRR 1078
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T +++ G+ S D+ +F + + I I M G TG A+VEF+ ++ A+
Sbjct: 400 TCYIKISGMCPSTSYSDLRKYFSGLYIPHNGIKI-MTVHGNRTGVAYVEFSRVSSAQKAL 458
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEA 191
+++ R +++ P EE ++A
Sbjct: 459 SRNNTMFRDRLVQIVPIGDEEFEQA 483
>gi|195336616|ref|XP_002034931.1| GM14203 [Drosophila sechellia]
gi|194128024|gb|EDW50067.1| GM14203 [Drosophila sechellia]
Length = 987
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ +R +PF A DIM FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 912 VVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAYES 971
Query: 169 DR 170
R
Sbjct: 972 RR 973
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T +R+ G+ + DI +F+ + + I I M + R TG A+VEF+ ++ A+
Sbjct: 357 TCYIRMSGMCQNTSYSDIRKYFQGLYIPHNGIKIMMVNGSR-TGVAYVEFSRVSSAQKAV 415
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRG 195
++ R +++ P +E + A R
Sbjct: 416 QRNNTMFRDRLVQIVPVGDDEFELAEERA 444
>gi|344273251|ref|XP_003408437.1| PREDICTED: RNA-binding protein 12B-like [Loxodonta africana]
Length = 971
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGEVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ Y+ELF SS EM + + R
Sbjct: 60 SGGLIKDSYVELFLSSKAEMQKTIEMKR 87
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 36/191 (18%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS-PHR- 89
GEAF + A+ R+ + YVE+F S + E K I + +D G P
Sbjct: 40 VGEAFIIFATDEDARRAISRSGGLIKDSYVELFLSSKAEMQKTIEMKRTDRTGRERPESG 99
Query: 90 ------------SIPRAKSHDEGKDSAVHTG--------------------ILRLRGLPF 117
++ S+ E +D+ HT L LRGLP+
Sbjct: 100 GSGAGSLSNFAGAVKEEASNSEYQDAEFHTNGTGRGDLKPRSTRPARAKNPYLFLRGLPY 159
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
+DD+ FF + D + DGR G+A V+FA+ D+ + R +GSR+
Sbjct: 160 LVNEDDVRVFFAGLCV--DGVIFLKLHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRF 217
Query: 178 IELFPSSHEEM 188
IE+ SS ++
Sbjct: 218 IEVMQSSEQQW 228
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G P GEA V N ++ AA+
Sbjct: 897 IKIMNLPFKANVNEILDFFHGYKVIPDSVSIQYNEKGLPIGEAIVTMINYNEAVAAIKDL 956
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 957 NDR-PVGPRKVKL 968
Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 170
+R PF K ++ FF DF L ED I++ + G GEA V+F + E + KA R
Sbjct: 396 IRNFPFDVTKVEVQKFFADFSLEEDDIYLLYDGKGVGLGEALVKFRSEEQAVKAERLNRR 455
Query: 171 MTLGS 175
LG+
Sbjct: 456 RFLGT 460
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 13/179 (7%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-- 74
+D V L +H + + G+A + L+ +R MG R++EV +S Q++
Sbjct: 175 VDGVIFLKLH-DGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQSSEQQWIHCGG 233
Query: 75 -------IANEVSDVRGGSPHRSIPR--AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIM 125
E S RG + S R +KS + + + L+ L K D+
Sbjct: 234 KQDDVPMRTEEHSPARGINDRHSRKRSHSKSPRRTRSRSPVGHYVHLKNLSLGISKRDLK 293
Query: 126 DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
FF+D LS + I ++ R T A V F +D A+A + + R I + P S
Sbjct: 294 SFFRDTDLSNEQITFLYKNEKR-TRYALVMFKTLKDFYTALALHKTIIQYRPIHIDPIS 351
>gi|7739449|gb|AAF68852.1|AF132364_1 hnRNP 2H9E [Homo sapiens]
gi|7739439|gb|AAF68846.1| hnRNP 2H9E [Homo sapiens]
Length = 139
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 52 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 109
Query: 162 SKAAMAKDRMTLGSRYIE---LFP 182
+ AAM+KD+ + + LFP
Sbjct: 110 AVAAMSKDKNNMRKWCLWHTILFP 133
>gi|195586962|ref|XP_002083236.1| GD13466 [Drosophila simulans]
gi|194195245|gb|EDX08821.1| GD13466 [Drosophila simulans]
Length = 986
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ +R +PF A DIM FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 911 VVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAYES 970
Query: 169 DR 170
R
Sbjct: 971 RR 972
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T +R+ G+ + DI +F+ + + I I M + R TG A+VEF+ ++ A+
Sbjct: 356 TCYIRMSGMCQNTSYSDIRKYFQGLYIPHNGIKIMMVNGSR-TGVAYVEFSRVSSAQKAV 414
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRG 195
++ R +++ P +E + A R
Sbjct: 415 QRNNTMFRDRLVQIVPVGDDEFELAEERA 443
>gi|7739447|gb|AAF68851.1|AF132363_2 hnRNP 2H9D [Homo sapiens]
gi|7739438|gb|AAF68845.1| hnRNP 2H9D [Homo sapiens]
gi|119574674|gb|EAW54289.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_f
[Homo sapiens]
Length = 145
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 58 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 115
Query: 162 SKAAMAKDRMTLGSRYIE---LFP 182
+ AAM+KD+ + + LFP
Sbjct: 116 AVAAMSKDKNNMRKWCLWHTILFP 139
>gi|76155549|gb|AAX26841.2| SJCHGC06966 protein [Schistosoma japonicum]
Length = 106
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 15/86 (17%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKD-------FVLSED--------SIHITMNSDGRPTGEAF 153
++R+RGLPFSA DDI++FFK F +S D I+ +GR GEAF
Sbjct: 9 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVSTDCTIRGGKRGIYFPQGPNGRSNGEAF 68
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIE 179
+E + +D + AMA +G RYIE
Sbjct: 69 IELDSKDDKEKAMAHHNEHMGRRYIE 94
>gi|195490443|ref|XP_002093142.1| GE20949 [Drosophila yakuba]
gi|194179243|gb|EDW92854.1| GE20949 [Drosophila yakuba]
Length = 1002
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ +R +PF A DI+ FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 927 VVAMRNVPFKAELKDILRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFES 986
Query: 169 DR 170
R
Sbjct: 987 RR 988
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T +R+ G+ + DI +F+ + + I I M + R TG A+VEF+ ++ A+
Sbjct: 353 TCYIRMSGMCQNTSYSDIRKYFQGLYIPHNGIKIMMVNGSR-TGVAYVEFSRVSSAQKAV 411
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRG 195
++ R +++ P +E + A R
Sbjct: 412 QRNNTMFRDRLVQIVPVGDDEFELAEERA 440
>gi|24655341|ref|NP_647626.1| CG7879, isoform A [Drosophila melanogaster]
gi|24655346|ref|NP_728631.1| CG7879, isoform B [Drosophila melanogaster]
gi|7292101|gb|AAF47513.1| CG7879, isoform A [Drosophila melanogaster]
gi|7292102|gb|AAF47514.1| CG7879, isoform B [Drosophila melanogaster]
Length = 985
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ +R +PF A DIM FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 910 VVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFES 969
Query: 169 DR 170
R
Sbjct: 970 RR 971
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T +R+ G+ + DI +F+ + + I I M + R TG A+VEF+ ++ A+
Sbjct: 353 TCYIRMSGMCQNTSYSDIRKYFQGMYIPHNGIKIMMVNGSR-TGVAYVEFSRVSSAQKAV 411
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRG 195
++ R I++ P +E + A R
Sbjct: 412 QRNNTMFRDRLIQIVPVGDDEFEMAEERA 440
>gi|156402343|ref|XP_001639550.1| predicted protein [Nematostella vectensis]
gi|156226679|gb|EDO47487.1| predicted protein [Nematostella vectensis]
Length = 862
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 111 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 170
++RGLPF A I++FF L +I MN G+P+G AFV+F++ D + A+ +++
Sbjct: 256 KMRGLPFKAKDKHILEFFS--PLKPVAIRFVMNKKGQPSGCAFVDFSSKSDLEKALKRNK 313
Query: 171 MTLGSRYIELFPSSHEEMD 189
L RYIELF ++ + D
Sbjct: 314 DYLQGRYIELFKDTNRDFD 332
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Query: 20 VDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE 78
V + FV +K + +G AF ++ AL+RN+ + RY+E+F+ +++
Sbjct: 279 VAIRFVMNKKGQPSGCAFVDFSSKSDLEKALKRNKDYLQGRYIELFKDTNRDF------- 331
Query: 79 VSDVRGGSPHRSIPRA---KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLS 134
+ + G +S R K DE ++ +G L LR L +S ++DI F+ F LS
Sbjct: 332 -DNNKQGDGEKSWMRKLQEKGDDEEEEPIGESGRLFLRNLAYSCSEEDIQHLFEKFGPLS 390
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPS 183
E ++ + +++ + G FV F E + KA D R + + P+
Sbjct: 391 EVNLPLDKHTN-KTIGIGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPA 439
>gi|20152135|gb|AAM11427.1| SD09402p [Drosophila melanogaster]
Length = 984
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ +R +PF A DIM FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 909 VVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFES 968
Query: 169 DR 170
R
Sbjct: 969 RR 970
Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T +R+ G+ + DI +F+ + + I I M + R TG A+VEF+ ++ A+
Sbjct: 353 TCYIRMSGMCQNTSYSDIRKYFQGMYIPHNGIKIMMVNGSR-TGVAYVEFSRVSSAQKAV 411
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRG 195
++ R I++ P +E + A R
Sbjct: 412 QRNNTMFRDRLIQIVPVGDDEFEMAEERA 440
>gi|383853070|ref|XP_003702047.1| PREDICTED: uncharacterized protein LOC100882770 [Megachile
rotundata]
Length = 886
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RGLPF DI+DFF D + IH+ +N G+P GE F EF +++ A AK+ +
Sbjct: 656 MRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQSGKPAGECFCEFDTTDEALRATAKNGL 715
Query: 172 TLGSRY--IELFP 182
G IEL P
Sbjct: 716 PFGKNVPTIELVP 728
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+L L +PF A ++I++FF DF + +++ N G PTG+A V FA+ +++ A+
Sbjct: 811 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 868
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
+E K + + +R +P SA +D+ F+ + +D + + ++ G G A+V+F+
Sbjct: 439 NESKSGSGTGHCVEVRNMPLSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFS 498
Query: 158 NAEDSKAAMAKDRMTLGS 175
AE + A++ R GS
Sbjct: 499 KAEGKELALSTPRYVRGS 516
>gi|410905475|ref|XP_003966217.1| PREDICTED: RNA-binding protein 12B-B-like [Takifugu rubripes]
Length = 627
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 21/158 (13%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIAN--EVSDV-----RGGSPHRS---------- 90
AL+R+RQ +G RYVEV +S +Y+ + E+ D+ R SP R+
Sbjct: 193 ALKRHRQYIGARYVEVSKSTANYWYQHAGSLPEMVDMQANVERDRSPLRNDRNLHQQRAP 252
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 150
P A+ + D + L L ++A K+DI + F++ L D I ++SDGR T
Sbjct: 253 SPLAQRSNPADDEYC----VLLENLSYTAEKEDIRNLFQNANLQNDQILHLVSSDGRRTR 308
Query: 151 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+FV F N D A++ ++ +R++ P S E+M
Sbjct: 309 SSFVLFKNLHDYCEALSHEKRLFFNRWVYTRPISREKM 346
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 37 CVLGYPLQVDFALQRNRQNMGRRYVEV--------FRSKRQEYYKAIANEVSDVRGGSPH 88
C+ G P+Q+ + Q QN R E+ F + +++ ++V GG
Sbjct: 63 CIRGSPVQLFLSSQTEMQNTLERNSEITELEEMRQFEESPRCSRRSVESDVGQRLGGR-- 120
Query: 89 RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 148
+ + S + S + LRG+PFS + D+ +FF ++ D I + N G
Sbjct: 121 --LGNSPSPEPQSSSQTEDLYVYLRGMPFSVTEMDVSNFFDGLLI--DGIVLLKNGHGSN 176
Query: 149 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
TG V+F +++D+ A+ + R +G+RY+E+ S+
Sbjct: 177 TGNGLVKFRSSDDTYEALKRHRQYIGARYVEVSKST 212
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GL +AG +DI FF + + +HI G EAF+ FA+ ED++ AM +
Sbjct: 4 VIRLQGLRITAGSEDIRKFFTGLKIPDGGVHII----GGEHDEAFILFASDEDARRAMNR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSR 194
+ ++LF SS EM L R
Sbjct: 60 SGGCIRGSPVQLFLSSQTEMQNTLER 85
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 107
AL ++ R+V R++ + + D G R PR + + + +
Sbjct: 323 ALSHEKRLFFNRWVYTRPISREKMIALLETQGPDEGQGDSER--PRERPPAQNRSTNSEK 380
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
+L ++ LPF K +IMDFF F ++ED + + + G G A V F + D+ A+A
Sbjct: 381 CVLFVQNLPFDVRKVEIMDFFHGFDITEDKVMLLHDHTGTGMGRALVVFQSEADATRALA 440
Query: 168 KD-RMTLGS 175
+ R LGS
Sbjct: 441 LNGRRFLGS 449
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL LPF ++I DF + L S+ + G+P+G A F + +++ AMA+
Sbjct: 552 LVRLVNLPFQIRTEEIYDFCYGYRLIPGSVSLQYEQSGKPSGSATAAFESRQEAMIAMAE 611
Query: 169 -DRMTLGSRYIELF 181
+GSR ++L
Sbjct: 612 LSGRPIGSRKVQLL 625
>gi|194864880|ref|XP_001971153.1| GG14589 [Drosophila erecta]
gi|190652936|gb|EDV50179.1| GG14589 [Drosophila erecta]
Length = 995
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ +R +PF A DI+ FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 920 VVAMRNVPFKAELKDILRFFGDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFES 979
Query: 169 DR 170
R
Sbjct: 980 RR 981
Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T +R+ G+ + DI +F+ + + I I M + R TG A+VEF+ ++ A+
Sbjct: 357 TCYIRMSGMCQNTSYSDIRKYFQGLYIPHNGIKIMMVNGSR-TGVAYVEFSRVSSAQKAL 415
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
++ R +++ P +E + A R
Sbjct: 416 QRNNTMFRDRLVQIAPVGDDEFELAEER 443
>gi|350036612|dbj|GAA34386.1| RNA-binding protein 12 [Clonorchis sinensis]
Length = 964
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP SA +I FF + E +HI +DG +AF+ FA ED++ AM
Sbjct: 4 IIRLQNLPMSANASNIRRFFGGLAIPEGGVHIVGGTDG----DAFIAFATDEDARKAMLL 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR + + LF SS EM + R
Sbjct: 60 DRQAINGAPVRLFLSSKTEMQSVIESAR 87
>gi|195376909|ref|XP_002047235.1| GJ12048 [Drosophila virilis]
gi|194154393|gb|EDW69577.1| GJ12048 [Drosophila virilis]
Length = 1091
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEVQVRLLLSSRAEMQKVIETAR 87
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-A 167
++ +R +PF A DI+ FF D+ LS D I N DG+PTG+A V F + ++++A +
Sbjct: 1016 VVAMRNVPFKADLKDILRFFSDYKLSPDDIIRRFNDDGKPTGDARVAFESPSEARSAFES 1075
Query: 168 KDRMTLGSRYIEL 180
K R + +R + L
Sbjct: 1076 KRRKQIFNRTVYL 1088
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%)
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
T +++ G+ S D+ +F + + I I ++G TG A+VEF+ ++
Sbjct: 439 AETCYIKISGMCPSTSYSDLRKYFAGLYIPHNGIKIVNGANGTRTGIAYVEFSRVSSAQK 498
Query: 165 AMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
A+ ++ R +++ P S EE ++A R +
Sbjct: 499 AVLRNNTMFRDRLVQIVPISDEEFEQADERAQ 530
>gi|326512460|dbj|BAJ99585.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 11/144 (7%)
Query: 57 GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS----HDEGKDSAVHTGILRL 112
G+ Y+++ S QE K +A+ S G S+ KS D+ K + V+T +++
Sbjct: 196 GKAYIKL--SPAQEADKFLADAASATIG---KYSVNAFKSIQFDMDKHKKTPVNT--VKV 248
Query: 113 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 172
+G P +D+I +FF+ + + S+H +GR E FV F + D AA+ KDR
Sbjct: 249 KGQPAETTEDEIREFFEGLSVGKISMHSLEIPNGRTVTEVFVTFNDPADVNAALEKDRQK 308
Query: 173 LGSRYIELFPSSHEEMDEALSRGR 196
+GSR++ + SS +E+ + + R R
Sbjct: 309 IGSRWVSIKRSSAKEVRKLIQRKR 332
>gi|195127149|ref|XP_002008031.1| GI13280 [Drosophila mojavensis]
gi|193919640|gb|EDW18507.1| GI13280 [Drosophila mojavensis]
Length = 1101
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ +R +PF A DI+ FF D+ LS D I N +G+PTG+A V F + ++++A
Sbjct: 1026 VVAMRNVPFKADLKDILRFFSDYKLSPDDIIRRFNDEGKPTGDARVAFESPAEARSAFES 1085
Query: 169 DR 170
R
Sbjct: 1086 RR 1087
>gi|307197792|gb|EFN78921.1| RNA-binding protein 12 [Harpegnathos saltator]
Length = 885
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RGLPF DI+DFF D + IH+ +N +G+P GE F EF +++ A AK+ +
Sbjct: 653 MRGLPFQTIDRDILDFFSDIGIVPHRIHMMLNQNGKPAGECFCEFDTTDEALRATAKNGL 712
Query: 172 TLGSRY--IELFP 182
G +EL P
Sbjct: 713 PFGKNVPTMELVP 725
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+L L +PF A ++I+DFF DF + D + N G PTG+A V FA+ +++ A+
Sbjct: 810 VLSLENVPFKADVNEIIDFFGDFDVKRDDVIRRYNDRGMPTGDARVAFASPSEAQRAL 867
>gi|198465484|ref|XP_001353649.2| GA20654 [Drosophila pseudoobscura pseudoobscura]
gi|198150179|gb|EAL31163.2| GA20654 [Drosophila pseudoobscura pseudoobscura]
Length = 1043
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-A 167
++ +R +PF A DI+ FF D+ LS D I N DG+PTG+ V F + ++++A +
Sbjct: 968 VVAMRNVPFKAELKDILRFFSDYKLSPDDIIRRFNDDGKPTGDTRVAFESPAEARSAYES 1027
Query: 168 KDRMTLGSRYIEL 180
+ R + SR + L
Sbjct: 1028 RRRKQIFSRTVHL 1040
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 9/186 (4%)
Query: 12 IHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY 71
I H + I+ V N TG A+ ALQRN R V++ E+
Sbjct: 416 IPHNGIKIMTV-----NGSRTGVAYIEFSRVSSAQKALQRNNTMFRDRQVQIVPIGDAEF 470
Query: 72 YKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+A E S + P + + + D G S +L + LP + DIM F
Sbjct: 471 EQA--EEKSRSQQHQPPQDVVGRNAGDRGGGSLPSFNVLYVEDLPQLTTEQDIMKMFSAT 528
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPSSHEEMDE 190
D I + + + R AFV FA ++ +A+ R +G R + + PSS EM +
Sbjct: 529 CTIVD-ILLAPSPNNRREFVAFVLFARETEALSALEDTSRHYIGFRQLRVRPSSQAEMLQ 587
Query: 191 ALSRGR 196
A + R
Sbjct: 588 AKEKQR 593
>gi|156401533|ref|XP_001639345.1| predicted protein [Nematostella vectensis]
gi|156226473|gb|EDO47282.1| predicted protein [Nematostella vectensis]
Length = 75
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+++++GLPF A DI FF L E IH+ N DG+ +G +F F +D++ AM +
Sbjct: 4 VIKMKGLPFEATSRDIQMFFDGLSLREKDIHLAANKDGKASGISFAVFNVDDDARKAMYR 63
Query: 169 DRMTLGSRYIEL 180
+G RYIEL
Sbjct: 64 TGKYMGKRYIEL 75
>gi|195175076|ref|XP_002028289.1| GL16722 [Drosophila persimilis]
gi|194117421|gb|EDW39464.1| GL16722 [Drosophila persimilis]
Length = 1044
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-A 167
++ +R +PF A DI+ FF D+ LS D I N DG+PTG+ V F + ++++A +
Sbjct: 969 VVAMRNVPFKAELKDILRFFSDYKLSPDDIIRRFNDDGKPTGDTRVAFESPAEARSAYES 1028
Query: 168 KDRMTLGSRYIEL 180
+ R + SR + L
Sbjct: 1029 RRRKQIFSRTVHL 1041
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 9/186 (4%)
Query: 12 IHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY 71
I H + I+ V N TG A+ ALQRN R V++ E+
Sbjct: 416 IPHNGIKIMTV-----NGSRTGVAYIEFSRVSSAQKALQRNNTMFRDRQVQIVPIGDAEF 470
Query: 72 YKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+A +E S + P + + + D G S +L + LP + DIM F
Sbjct: 471 EQA--DEKSRSQQHQPPQDVVGRNAGDRGGGSLPSFNVLYVEDLPQLTTEQDIMKMFSAT 528
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPSSHEEMDE 190
D I + + + R AFV FA ++ +A+ R +G R + + PSS EM +
Sbjct: 529 CTIVD-ILLAPSPNNRREFVAFVLFARETEALSALEDTSRHYIGFRQLRVRPSSQAEMLQ 587
Query: 191 ALSRGR 196
A + R
Sbjct: 588 AKEKQR 593
>gi|402581245|gb|EJW75193.1| hypothetical protein WUBG_13897 [Wuchereria bancrofti]
Length = 179
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+ I+RL+ LP SA DI FF + + ++HI G P G+AF+ FA ED++ AM
Sbjct: 2 SWIIRLQRLPLSANAADIRSFFAGLRIPDGAVHIV----GGPDGDAFIGFATDEDARQAM 57
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + + + L SS EMD +++ R
Sbjct: 58 RFDNRRIHDQRVRLLLSSRVEMDAVIAKAR 87
>gi|70945353|ref|XP_742505.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521527|emb|CAH76146.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 139
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 12/103 (11%)
Query: 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIH 139
+RG S + I ++ V+ ++LRGLPF +D+I +FF F LS ++ IH
Sbjct: 17 IRGFSEYSQI---------EEDKVNLPRIKLRGLPFDVSEDEIKNFFSSFKLSNQKNPIH 67
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181
I +PTG A+V F ++E+++ A +R L +RYIE++
Sbjct: 68 IIKGIKDKPTGHAYVYFDDSEEARNACQHLNRKFLRNRYIEIY 110
>gi|389582716|dbj|GAB65453.1| RNA binding protein [Plasmodium cynomolgi strain B]
Length = 130
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANA 159
+ V+ L+LRGLPF A +++I FFK+F L++ IHI +PTG+A V F +
Sbjct: 19 EEKVNLPRLKLRGLPFDASEEEIKTFFKNFQLAKVGYPIHIIRGVKNKPTGQAHVYFDDE 78
Query: 160 EDS-KAAMAKDRMTLGSRYIELF 181
E++ KA +R L +RYIE++
Sbjct: 79 EEARKACETLNRKFLRNRYIEIY 101
>gi|348534026|ref|XP_003454504.1| PREDICTED: RNA-binding protein 12B-A-like [Oreochromis niloticus]
Length = 634
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L L+GLPFS + +I DFF V+ D + + N G G FV+FA ED+ + +D
Sbjct: 140 LFLKGLPFSVTEKEICDFFGGLVV--DEVVLIKNRQGLNNGTGFVKFATREDAMEGLKRD 197
Query: 170 RMTLGSRYIEL 180
R +GSRYIE+
Sbjct: 198 REYIGSRYIEI 208
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GL +AG +DI FF + + +HI G EAF+ FA+ ED++ AM +
Sbjct: 4 VIRLQGLRVTAGSEDIRRFFTGLKIPDGGVHII----GGERDEAFIIFASDEDARRAMTR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSR 194
+ + L SS EM L R
Sbjct: 60 SGGVIRGSPVTLLLSSKAEMQNMLER 85
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Query: 19 IVDVLFVHKNNKFTGEAFCVLGYPLQVDF--ALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
+VD + + KN + + + + D L+R+R+ +G RY+E+ + ++++
Sbjct: 162 VVDEVVLIKNRQGLNNGTGFVKFATREDAMEGLKRDREYIGSRYIEISTTTLNDWHRVTG 221
Query: 77 NEVSDVRGGSPHRS---IP---------RAKSHDEGKDSAVHTG--ILRLRGLPFSAGKD 122
+ + GS R IP R++S + A G + L L F+ K+
Sbjct: 222 RMPTAIIDGSFQRGRSPIPNQRDPQHRVRSRSPVAQRRIAPSEGEYCVLLENLSFAVEKE 281
Query: 123 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182
DI F + L +D I ++SDG+ A V F + D A+A ++ +R + P
Sbjct: 282 DIKRLFHNAKLGDDQILHLIDSDGKRKRSALVLFKSLRDYCEALAHEKRQFFNRLVHTRP 341
Query: 183 SSHEEM 188
S E M
Sbjct: 342 VSRENM 347
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAKDR 170
+R LPF K +I+DFF F ++ED++ + + +G G+A V F + AE +A + R
Sbjct: 388 VRNLPFDVRKVEIIDFFHGFNITEDNVCVLQDREGAGVGQALVVFGSEAEAMRALILDGR 447
Query: 171 MTLGSRYIELFPSSHEEMDE 190
LGS+ I L + EM E
Sbjct: 448 RFLGSKVI-LKCITRSEMQE 466
>gi|355694925|gb|AER99832.1| heteroproteinous nuclear ribonucleoprotein H3 [Mustela putorius
furo]
Length = 108
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 40 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 97
Query: 162 SKAAMAKDR 170
+ AAM+KD+
Sbjct: 98 AVAAMSKDK 106
>gi|390468249|ref|XP_002753088.2| PREDICTED: probable RNA-binding protein 19 [Callithrix jacchus]
Length = 1066
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 389 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 444
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 445 DFSNEEEVKKALKCNREYMGGRYIEVF 471
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + + G
Sbjct: 439 TGYIFVDFSNEEEVKKALKCNREYMGGRYIEVFREKNVTTTKGLPKNSAKSWQG------ 492
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 493 -RMLGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 549
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AFV F E + KA D R + + PS+
Sbjct: 550 GFAFVTFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 585
>gi|326674797|ref|XP_003200207.1| PREDICTED: RNA-binding protein 12B-A [Danio rerio]
Length = 685
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
++RG + A+ +G L+L G+PFSA KD++ +FF L D I
Sbjct: 129 EMRGRPASSTFSEARRQRDGDAPERAEVYLKLTGMPFSATKDNVHNFFAG--LKVDDILF 186
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
N G +G + V F ED+ + +DR +GSRYI++ + EE
Sbjct: 187 LKNPRGMFSGNSMVRFTTKEDAIEGLKRDRQYMGSRYIQITRCTEEEW 234
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GL +AG +DI +FF + + +HI G EAF+ FA+ ED++ AM++
Sbjct: 4 VIRLQGLRVTAGSEDIRNFFTGLRIPDGGVHII----GGELEEAFIIFASDEDARRAMSR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
+ + LF SS EM L
Sbjct: 60 SGGCIKGSTVNLFLSSKSEMQSVL 83
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG---GSPHRSIPRAKSHDEGKDSA 104
L N++ M + V V +++ + + + D RG GS RS ++S DS
Sbjct: 332 GLAHNKEMMYNKVVYVSPISKEKMVTMLESSI-DARGEEKGS-RRSAEASQSQRNTPDSQ 389
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
+ L +R LPF K +IMDFF + L+ED + + + G GEA V F + K
Sbjct: 390 LRC--LYVRNLPFDVRKVEIMDFFHGYALTEDRVILLRDERGAGLGEALVIF---QTEKE 444
Query: 165 AMAKDRMTLGSRYI 178
AM + G R++
Sbjct: 445 AMTGQSLN-GQRFL 457
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 7/178 (3%)
Query: 17 MDIVDVLFVHKNNK--FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
+ + D+LF+ KN + F+G + L+R+RQ MG RY+++ R +E+ K
Sbjct: 179 LKVDDILFL-KNPRGMFSGNSMVRFTTKEDAIEGLKRDRQYMGSRYIQITRCTEEEWLKE 237
Query: 75 IANEV-SDVRGGSPHRSIPRAKSHDEGKDSAV---HTGILRLRGLPFSAGKDDIMDFFKD 130
V +D+R +P + S + LP K D+ F +
Sbjct: 238 GGLIVAADMRKRTPVERVRSRSPISYRSRSRSPSHEEYCIMFENLPPLVEKRDVRVFLQP 297
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
L +D I I + + A V F + D A +A ++ + ++ + + P S E+M
Sbjct: 298 VALKDDQIIIFSSKKDDKSKSAVVVFRSLTDYCAGLAHNKEMMYNKVVYVSPISKEKM 355
>gi|159164096|pdb|2DGW|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
Rna-Binding Protein 19
Length = 91
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
+ HT ++LRG PF+ + ++M+F L +I I N+ G TG FV+F+N E+
Sbjct: 8 TTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFVDFSNEEEV 63
Query: 163 KAAMAKDRMTLGSRYIELF 181
K A+ +R +G RYIE+F
Sbjct: 64 KQALKCNREYMGGRYIEVF 82
>gi|328909179|gb|AEB61257.1| heterogeneous nuclear ribonucleoprotein F-like protein, partial
[Equus caballus]
Length = 113
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 121 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180
++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+KDR + RYIEL
Sbjct: 1 ENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIEL 58
Query: 181 FPSS 184
F +S
Sbjct: 59 FLNS 62
>gi|312073187|ref|XP_003139407.1| hypothetical protein LOAG_03822 [Loa loa]
Length = 180
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP SA DI FF + + ++HI G P G+AF+ FA ED++ AM
Sbjct: 4 IIRLQRLPLSANAADIRSFFAGLRIPDGAVHIV----GGPDGDAFIGFATDEDARQAMRF 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + + + L SS EMD +++ R
Sbjct: 60 DNRRIHDQRVRLLLSSRVEMDAVIAKAR 87
>gi|17510849|ref|NP_492671.1| Protein Y106G6D.7 [Caenorhabditis elegans]
gi|5824657|emb|CAA20980.2| Protein Y106G6D.7 [Caenorhabditis elegans]
Length = 948
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP +AG D+ FF + + ++HI G GE FV F++ +D++ AM K
Sbjct: 4 IIRLKNLPMTAGASDVRTFFTGLKIPDGAVHII----GGDEGEVFVGFSSDDDARLAMTK 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR+ + + LF SS E + ++
Sbjct: 60 DRLMIHGAEVRLFLSSKSEQNSVIA 84
Score = 37.4 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
+L G P +D+++FF D+ +SI I DG TGE + N E+++ A
Sbjct: 873 VLSCNGFPKDVTLEDVVEFFNDYEPDRNSIRIRRGDDGVMTGECMLACQNQENARRA 929
>gi|170596136|ref|XP_001902655.1| swan [Brugia malayi]
gi|158589551|gb|EDP28496.1| swan, putative [Brugia malayi]
Length = 179
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+ I+RL+ LP SA DI FF + + ++HI G P G+AF+ FA ED++ AM
Sbjct: 2 SWIIRLQRLPLSANAADIRTFFAGLRIPDGAVHIV----GGPDGDAFIGFATDEDARQAM 57
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + + + L SS EMD +++ R
Sbjct: 58 RFDNRRIHDQRVRLLLSSRVEMDAVIAKAR 87
>gi|148228969|ref|NP_001088073.1| RNA binding motif protein 19 [Xenopus laevis]
gi|52354760|gb|AAH82875.1| LOC494769 protein [Xenopus laevis]
Length = 920
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F L +V AL+RN+ MG RY+EVFR Y K+ + V+ + R
Sbjct: 318 TGYVFVDLSSEEEVQKALKRNKDYMGGRYIEVFRD---NYTKSPS-----VQSKAESRPW 369
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
+ + ++ +G L +R LP+S +DD+ F + +SE IH ++S +P
Sbjct: 370 EQRDKQELQQEDLSESGRLFVRNLPYSCTEDDLDKLFSKYGPISE--IHFPIDSLTKKPK 427
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS--HEEMDEA 191
G AFV F E + A A+ D R + + PS+ EE++E+
Sbjct: 428 GFAFVTFLITEHAVKAYAEVDGQIFQGRLLHVLPSAAKKEEVNES 472
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++LRG PF+ + ++ +F L +I I N+ G TG FV+ ++ E+ + A+ ++
Sbjct: 281 VKLRGAPFNVTEQNVKEFL--VPLKPVAIRIARNTYGNKTGYVFVDLSSEEEVQKALKRN 338
Query: 170 RMTLGSRYIELF 181
+ +G RYIE+F
Sbjct: 339 KDYMGGRYIEVF 350
>gi|194043009|ref|XP_001928191.1| PREDICTED: probable RNA-binding protein 19 [Sus scrofa]
Length = 967
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V ALQ NR+ MG RY+EVFR K KA + G R++
Sbjct: 340 TGYVFVDFSSEEEVKKALQCNREYMGGRYIEVFREKSIPTAKAPPKNSTKAWQG---RTL 396
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
H+E +D A +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 397 ---GEHEEEEDLA-DSGRLFVRNLPYTSSEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 450
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 451 GFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 486
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++M+F L +I I N+ G TG FV+F++ E+ K A+
Sbjct: 302 TVKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKALQC 359
Query: 169 DRMTLGSRYIELF 181
+R +G RYIE+F
Sbjct: 360 NREYMGGRYIEVF 372
>gi|393908967|gb|EJD75265.1| hypothetical protein LOAG_17558 [Loa loa]
Length = 972
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP SA DI FF + + ++HI G P G+AF+ FA ED++ AM
Sbjct: 4 IIRLQRLPLSANAADIRSFFAGLRIPDGAVHIV----GGPDGDAFIGFATDEDARQAMRF 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + + + L SS EMD +++ R
Sbjct: 60 DNRRIHDQRVRLLLSSRVEMDAVIAKAR 87
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++ G P + D+ FF + L E S+ I ++ G PTGE + + +++ A+
Sbjct: 891 VISCHGFPANVTLTDVAQFFDKYSLVESSVRIKLDDSGVPTGECLLAVGSPQEANKAV 948
>gi|109476157|ref|XP_001054639.1| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
Length = 843
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLPF AG DI FFK + + +H+ G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVI----GGKAGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIDMKR 87
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A++
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTASKG 242
Query: 80 SDV-----RGGSPHRSI------PRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDF 127
D SP R + R++S S G + LR L K D+
Sbjct: 243 GDTLHKRSEEHSPSRRLNDRYFWKRSRSKSPRTRSRSPLGFYVHLRNLSLHTNKRDLRYL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D LS D I + D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLSNDQIKF-LYKDDRRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPISRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ F++K+++ T AF + + AL ++ + R V + R+E K I
Sbjct: 313 IKFLYKDDRRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPISRKEMVKIIEC-YEK 371
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S P K +EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEEERPGRVSQKYSEEGFPGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 432 YLLSDDKGIGLGEALVRFKSEEQAMKAERLNRQRFLGTEVLLRLISEEQMQE 483
Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++ LPF A ++I+DFF + + S+ + N G P GEA V N ++ AA+
Sbjct: 769 VKISNLPFKANSNEILDFFHGYKVIPGSVSLQYNEQGLPIGEAIVAMTNYNEALAAV 825
>gi|281427346|ref|NP_001163962.1| RNA binding motif protein 19 [Xenopus (Silurana) tropicalis]
gi|189442184|gb|AAI67335.1| Unknown (protein for MGC:135501) [Xenopus (Silurana) tropicalis]
Length = 542
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F L +V AL+RN+ MG RY+EVFR Y K+ + V + R
Sbjct: 318 TGYVFVDLNSEEEVQKALKRNKDYMGGRYIEVFRDN---YTKSPS-----VPQKTQSRPW 369
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
+ +E ++ +G L +R LP++ +DD+ F + +SE IH ++S +P
Sbjct: 370 EQRDKQEELQEDVSESGRLFVRNLPYTCNEDDLEKLFSKYGPISE--IHFPIDSLTKKPK 427
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS--HEEMDEA 191
G AFV F E + A A+ D R + + PS+ +E++E+
Sbjct: 428 GFAFVTFLITEHAVKAYAEVDGQIFQGRMLHVLPSAAKKDEVNES 472
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++ +F L +I I N+ G TG FV+ + E+ + A+ +
Sbjct: 280 TVKLRGAPFNVTEQNVREFL--VPLKPVAIRIARNTYGNKTGYVFVDLNSEEEVQKALKR 337
Query: 169 DRMTLGSRYIELF 181
++ +G RYIE+F
Sbjct: 338 NKDYMGGRYIEVF 350
>gi|62648675|ref|XP_232819.3| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
gi|109476143|ref|XP_001053414.1| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
Length = 843
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLPF AG DI FFK + + +H+ G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVI----GGKAGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIDMKR 87
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A++
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTASKG 242
Query: 80 SDV-----RGGSPHRSI------PRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDF 127
D SP R + R++S S G + LR L K D+
Sbjct: 243 GDTLHKRSEEHSPSRRLNDRYFWKRSRSKSPRTRSRSPLGFYVHLRNLSLHTNKRDLRYL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D LS D I + D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLSNDQIKF-LYKDDRRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPISRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 108 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ AA
Sbjct: 765 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVAMTNYNEALAA 824
Query: 166 M 166
+
Sbjct: 825 V 825
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ F++K+++ T AF + + AL ++ + R V + R+E K I
Sbjct: 313 IKFLYKDDRRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPISRKEMVKIIEC-YEK 371
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S P K +EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEEERPGRVSQKYSEEGFPGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 432 YLLSDDKGIGLGEALVRFKSEEQAMKAERLNRQRFLGTEVLLRLISEEQMQE 483
>gi|148231978|ref|NP_001083138.1| RNA binding motif protein 12B [Xenopus laevis]
gi|37805207|gb|AAH60345.1| MGC68792 protein [Xenopus laevis]
Length = 654
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP +AG +DI FF + + +HIT G EAF+ FA ED++ AM
Sbjct: 4 VIRLQGLPVTAGSNDIRHFFSGLHIPDGGVHIT----GGKYAEAFIIFATDEDARRAMRC 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ IELF SS EM L R
Sbjct: 60 SGGFIKKSQIELFLSSKAEMQHTLEMNR 87
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 72/131 (54%), Gaps = 13/131 (9%)
Query: 71 YYKAIANEVSDVRGGS-------PHRSIPRAKSHDEGKDSAVHT---GILRLRGLPFSAG 120
Y K +A++ S+V GS +++PR K + + + G + L GLP+S
Sbjct: 111 YQKNVASK-SNVEAGSDGSGAKHKEKNVPRPKYQGKKETRPIKDNSYGYVFLCGLPYSTS 169
Query: 121 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180
+ D+ DFF F + + +H ++ S+G G A+V+FA+ +D+KA++++D +G R I +
Sbjct: 170 ELDVKDFFHGFHVVD--VHFSVRSNGARDGNAYVKFASVQDAKASLSRDYEYIGHRRIAV 227
Query: 181 FPSSHEEMDEA 191
S+ + EA
Sbjct: 228 KLSTEHKWIEA 238
>gi|226497574|ref|NP_057280.2| probable RNA-binding protein 19 [Homo sapiens]
gi|226497654|ref|NP_001140170.1| probable RNA-binding protein 19 [Homo sapiens]
gi|226497734|ref|NP_001140171.1| probable RNA-binding protein 19 [Homo sapiens]
gi|308153566|sp|Q9Y4C8.3|RBM19_HUMAN RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
Length = 960
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + G
Sbjct: 333 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AF+ F E + KA D R + + PS+
Sbjct: 444 GFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|158256324|dbj|BAF84133.1| unnamed protein product [Homo sapiens]
gi|189054403|dbj|BAG37176.1| unnamed protein product [Homo sapiens]
Length = 960
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + G
Sbjct: 333 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AF+ F E + KA D R + + PS+
Sbjct: 444 GFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|5912081|emb|CAB55987.1| hypothetical protein [Homo sapiens]
Length = 960
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + G
Sbjct: 333 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AF+ F E + KA D R + + PS+
Sbjct: 444 GFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|26327221|dbj|BAC27354.1| unnamed protein product [Mus musculus]
Length = 82
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDE 190
+ +ELF SS EM +
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQK 81
>gi|40788328|dbj|BAA31657.2| KIAA0682 protein [Homo sapiens]
Length = 973
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 296 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 351
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 352 DFSNEEEVKQALKCNREYMGGRYIEVF 378
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + G
Sbjct: 346 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG------ 399
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 400 -RILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 456
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AF+ F E + KA D R + + PS+
Sbjct: 457 GFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 492
>gi|168278697|dbj|BAG11228.1| RNA binding motif protein 19 [synthetic construct]
Length = 960
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + G
Sbjct: 333 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AF+ F E + KA D R + + PS+
Sbjct: 444 GFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|256073174|ref|XP_002572907.1| rna-binding protein 12 (sh3/ww domain anchor protein in the
nucleus) (swan) [Schistosoma mansoni]
gi|350645108|emb|CCD60169.1| rna-binding protein 12 (sh3/ww domain anchor protein in the
nucleus) (swan), putative [Schistosoma mansoni]
Length = 923
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP SA +I FF + E +HI ++G +AF+ FA ED++ AM
Sbjct: 4 IIRLQNLPISANASNIRRFFSGLSIPEGGVHIVGGTEG----DAFIAFATDEDARKAMLL 59
Query: 169 DRMTLGSRYIELFPSSHEEM 188
DR T+ + LF SS EM
Sbjct: 60 DRQTINGASVRLFLSSKAEM 79
>gi|13279134|gb|AAH04289.1| RBM19 protein [Homo sapiens]
gi|13544005|gb|AAH06137.1| RBM19 protein [Homo sapiens]
gi|190689379|gb|ACE86464.1| RNA binding motif protein 19 protein [synthetic construct]
gi|190690741|gb|ACE87145.1| RNA binding motif protein 19 protein [synthetic construct]
Length = 960
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + G
Sbjct: 333 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AF+ F E + KA D R + + PS+
Sbjct: 444 GFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|395833986|ref|XP_003789998.1| PREDICTED: probable RNA-binding protein 19 [Otolemur garnettii]
Length = 959
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K RG +P +
Sbjct: 333 TGYIFVDFNSEEEVKKALKCNREYMGGRYIEVFREKSSPMAKG-----PQKRGTTPWQG- 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F F LSE IH ++S +P
Sbjct: 387 -RTLGDNEEEEDLADSGRLFVRNLPYTSTEEDLEKLFSKFGPLSE--IHYPIDSLIKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AFV F E + KA D R + + PS+
Sbjct: 444 GFAFVTFMFPEHAVKAYTEVDGQVFQGRMLHVLPST 479
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTPHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F + E+ K A+ +R +G RYIE+F
Sbjct: 339 DFNSEEEVKKALKCNREYMGGRYIEVF 365
>gi|426374260|ref|XP_004053996.1| PREDICTED: probable RNA-binding protein 19 [Gorilla gorilla
gorilla]
Length = 960
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + G
Sbjct: 333 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTRSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RILGENEEEEDLAESGRLFVRNLPYTSSEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AF+ F E + KA D R + + PS+
Sbjct: 444 GFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|313244026|emb|CBY14896.1| unnamed protein product [Oikopleura dioica]
Length = 407
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
D+ + I+++ GLP+ + +I +FF L++ + I + DGR TG AF F + +D
Sbjct: 259 DNCLFDKIVKMSGLPYRITRGEIREFFSPIDLTD--VRIEIGKDGRTTGNAFAAFFSDDD 316
Query: 162 SKAAMAKDRMTLGSRYIELF 181
AM K++ LG+RY+EL+
Sbjct: 317 VWNAMQKNKQMLGTRYVELY 336
>gi|401395936|ref|XP_003879715.1| putative RRM domain-containing protein [Neospora caninum Liverpool]
gi|325114122|emb|CBZ49680.1| putative RRM domain-containing protein [Neospora caninum Liverpool]
Length = 246
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLS---EDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 165
LRLRGL + A DDI FF+ + L+ E++I + DGRPTG A V F +++ +A
Sbjct: 141 LRLRGLSYRATTDDIAQFFEGYSLAGPPEEAIQLHRRMDGRPTGWASVYFETEQEARRAK 200
Query: 166 MAKDRMTLGSRYIELF 181
K R L RYIE+F
Sbjct: 201 QDKHRSYLHGRYIEIF 216
>gi|114647138|ref|XP_522578.2| PREDICTED: probable RNA-binding protein 19 [Pan troglodytes]
gi|410216396|gb|JAA05417.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410216398|gb|JAA05418.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410263956|gb|JAA19944.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410263958|gb|JAA19945.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410292596|gb|JAA24898.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410292598|gb|JAA24899.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410339181|gb|JAA38537.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410339183|gb|JAA38538.1| RNA binding motif protein 19 [Pan troglodytes]
Length = 961
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + G
Sbjct: 333 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AF+ F E + KA D R + + PS+
Sbjct: 444 GFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|71896463|ref|NP_001026115.1| RNA-binding protein 12B [Gallus gallus]
gi|53136630|emb|CAG32644.1| hypothetical protein RCJMB04_31o3 [Gallus gallus]
Length = 698
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 30/195 (15%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA------- 74
+L H+N G P L+R+RQ MG+R++E+ + + + +
Sbjct: 203 ILIKHRNGLNNGNCLVKFATPGDALEGLKRHRQYMGQRFIEISPTTEERWIEYGGRVDMP 262
Query: 75 ------IANEVSDVRGG-----------SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 117
+ E S G SP R R++S G++ +H LR L
Sbjct: 263 NEMDHFLCKEHSPRSSGYMHARKHSHSRSPRRQRTRSQS-PSGQEYYIH-----LRNLST 316
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
+ K D+ +FF D +S I I R T +AFV N D +AA+ R L +R
Sbjct: 317 NVEKRDLREFFPDLDISNKQIKILSEKHQRRTRDAFVMLKNERDYQAALECHRKVLLNRS 376
Query: 178 IELFPSSHEEMDEAL 192
+ +FP S + M + L
Sbjct: 377 VYIFPISRKSMLKML 391
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHII----GGEMGEAFIIFATDEDARRAMSC 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ IELF SS EM + R
Sbjct: 60 SGGFIKDSRIELFLSSKAEMQNTIEMSR 87
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK- 168
+RL+ LPF A ++I+DFF + + +S+ + N G P+G+A V N E++ A+ +
Sbjct: 624 IRLKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMTAINEL 683
Query: 169 -DRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 684 NDR-PIGPRKVKL 695
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRG+P+SA +D + DF + D + + + +G G V+FA D+ + +
Sbjct: 176 LFLRGIPYSATEDAVRDFLSGIRV--DGVILIKHRNGLNNGNCLVKFATPGDALEGLKRH 233
Query: 170 RMTLGSRYIELFPSSHEEMDEALSR 194
R +G R+IE+ P++ E E R
Sbjct: 234 RQYMGQRFIEISPTTEERWIEYGGR 258
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN---EV 79
+ K+ + T +AF +L AL+ +R+ + R V +F R+ K + + +
Sbjct: 339 ILSEKHQRRTRDAFVMLKNERDYQAALECHRKVLLNRSVYIFPISRKSMLKMLDSYERKR 398
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFVLSED 136
S RG P ++I KS+ EG H+G+ +R PF K ++ FF+ F + ED
Sbjct: 399 SQERG-HPGQAI-TEKSYREG-----HSGLKMCAYVRNFPFDVTKVEVQRFFERFDIDED 451
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAA 165
I++ + G GEA V+F + E + A
Sbjct: 452 DIYLLYDDKGVGLGEALVKFKSEEQAMKA 480
>gi|397525018|ref|XP_003832476.1| PREDICTED: probable RNA-binding protein 19 [Pan paniscus]
Length = 961
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + G
Sbjct: 333 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AF+ F E + KA D R + + PS+
Sbjct: 444 GFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|403372892|gb|EJY86355.1| hypothetical protein OXYTRI_15124 [Oxytricha trifallax]
Length = 635
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L+LRGLPFS +D+I FF +F DS+ + +G TGE + F + EDSK A +
Sbjct: 447 LKLRGLPFSIKRDEINQFFSNFNYVRDSVKLGRTGEGLLTGEGAILFHSEEDSKKAFQQR 506
Query: 170 R-MTLGSRYIELF 181
+ ++G R+IEL+
Sbjct: 507 QGQSIGHRWIELY 519
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 50 QRNRQNMGRRYVEVFRSKRQEY--YKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 107
QR Q++G R++E+++ +Y ++ + + V+ G R +
Sbjct: 505 QRQGQSIGHRWIELYQITIADYQNFEEMQKQRRTVKLGKYITDSNRER------------ 552
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
I++LRGLPF DDI FFKD+ +++ + I +G+ TG V F + E ++ A
Sbjct: 553 -IMKLRGLPFQVQPDDITRFFKDYQVTKSDVVIE-EINGKKTGFGLVFFKDQETAQQAQE 610
Query: 168 K-DRMTLGSRYIELFPSSHEEM 188
+R +G+RY+E+ + +M
Sbjct: 611 NMNRKKIGNRYVEIMEPTITDM 632
>gi|148673677|gb|EDL05624.1| mCG123728, isoform CRA_a [Mus musculus]
gi|148673678|gb|EDL05625.1| mCG123728, isoform CRA_a [Mus musculus]
gi|148673679|gb|EDL05626.1| mCG123728, isoform CRA_a [Mus musculus]
Length = 834
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A E
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTATEG 242
Query: 80 SDV-----RGGSPHRSIP----RAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDF 127
D SP R I R +SH + + + + + L+ L + K D+ +
Sbjct: 243 GDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRARSRSPLGFYVHLKNLSLNTNKRDLRNL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ D I D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ FV+K+ + T AF + + AL ++ + R V + R+E + I
Sbjct: 313 IKFVYKDERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIEC-YEK 371
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S + P K EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 432 YLLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQE 483
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 90 SIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
S P AK + + V I+ ++ LPF A +I+DFF + + DS+ + N G
Sbjct: 738 SFPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGL 797
Query: 148 PTGEAFVEFANAEDSKAAM 166
P GEA V N ++ AA+
Sbjct: 798 PIGEAIVAMTNYNEALAAV 816
>gi|29747798|gb|AAH50844.1| RNA binding motif protein 12B [Mus musculus]
Length = 836
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A E
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTATEG 242
Query: 80 SDV-----RGGSPHRSIP----RAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDF 127
D SP R I R +SH + + + + + L+ L + K D+ +
Sbjct: 243 GDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRARSRSPLGFYVHLKNLSLNTNKRDLRNL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ D I D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ FV+K+ + T AF + + AL ++ + R V + R+E + I
Sbjct: 313 IKFVYKDERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIEC-YEK 371
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S + P K EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 432 YLLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQE 483
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 90 SIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
S P AK + + V I+ ++ LPF A +I+DFF + + DS+ + N G
Sbjct: 740 SFPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGL 799
Query: 148 PTGEAFVEFANAEDSKAAM 166
P GEA V N ++ AA+
Sbjct: 800 PIGEAIVAMTNYNEALAAV 818
>gi|187953621|gb|AAI37621.1| C430048L16Rik protein [Mus musculus]
Length = 834
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A E
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTATEG 242
Query: 80 SDV-----RGGSPHRSIP----RAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDF 127
D SP R I R +SH + + + + + L+ L + K D+ +
Sbjct: 243 GDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRARSRSPLGFYVHLKNLSLNTNKRDLRNL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ D I D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ FV+K+ + T AF + + AL ++ + R V + R+E + I
Sbjct: 313 IKFVYKDERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIEC-YEK 371
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S + P K EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 432 YLLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQE 483
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 108 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ +A
Sbjct: 756 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSA 815
Query: 166 M 166
+
Sbjct: 816 V 816
>gi|71067349|ref|NP_945195.1| RNA-binding protein 12B-B [Mus musculus]
gi|341941784|sp|Q66JV4.2|R12BB_MOUSE RecName: Full=RNA-binding protein 12B-B; AltName: Full=RNA-binding
motif protein 12B-B
gi|26348891|dbj|BAC38085.1| unnamed protein product [Mus musculus]
Length = 834
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A E
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTATEG 242
Query: 80 SDV-----RGGSPHRSIP----RAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDF 127
D SP R I R +SH + + + + + L+ L + K D+ +
Sbjct: 243 GDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRARSRSPLGFYVHLKNLSLNTNKRDLRNL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ D I D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ FV+K+ + T AF + + AL ++ + R V + R+E + I
Sbjct: 313 IKFVYKDERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIEC-YEK 371
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S + P K EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 432 YLLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQE 483
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 108 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ +A
Sbjct: 756 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSA 815
Query: 166 M 166
+
Sbjct: 816 V 816
>gi|345479719|ref|XP_001600826.2| PREDICTED: epithelial splicing regulatory protein 2-like [Nasonia
vitripennis]
Length = 746
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RGLP+ DI+D++ D L IH+ +N +G+P GE F EF + E++ A AK+ +
Sbjct: 502 MRGLPYQTIDRDILDYYSDIGLVPHRIHMLLNQNGKPAGECFCEFNSCEEAVRATAKNGV 561
Query: 172 TLG 174
LG
Sbjct: 562 PLG 564
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+L L +PF A D+I+DFF DF +S + + N G PTG+A V F + +++ A+ +
Sbjct: 671 VLSLENVPFKADIDEIIDFFGDFQVSREQVIRRYNDKGMPTGDARVAFTSPLEAQRALRE 730
Query: 169 DR 170
R
Sbjct: 731 LR 732
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ +R +P SA D+ F+ + D I + ++ G G A+V+F N E + A+
Sbjct: 287 IEIRNMPMSASYGDVRQAFQGIYIRNDGIKLITDTHGNRVGIAYVKFGNFESKEQALKGT 346
Query: 170 RMTLGS 175
+ GS
Sbjct: 347 KYVRGS 352
>gi|51593298|gb|AAH80741.1| C430048L16Rik protein [Mus musculus]
Length = 834
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A E
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTATEG 242
Query: 80 SDV-----RGGSPHRSIP----RAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDF 127
D SP R I R +SH + + + + + L+ L + K D+ +
Sbjct: 243 GDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRARSRSPLGFYVHLKNLSLNTNKRDLRNL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ D I D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ DD+ FF + D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNDDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ FV+K+ + T AF + + AL ++ + R V + R+E + I
Sbjct: 313 IKFVYKDERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIEC-YEK 371
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S + P K EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 432 YLLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQE 483
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 108 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ +A
Sbjct: 756 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSA 815
Query: 166 M 166
+
Sbjct: 816 V 816
>gi|172088112|ref|NP_082502.2| RNA-binding protein 12B-A [Mus musculus]
gi|124020998|sp|Q80YR9.2|R12BA_MOUSE RecName: Full=RNA-binding protein 12B-A; AltName: Full=RNA-binding
motif protein 12B-A
Length = 836
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A E
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTATEG 242
Query: 80 SDV-----RGGSPHRSIP----RAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDF 127
D SP R I R +SH + + + + + L+ L + K D+ +
Sbjct: 243 GDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRARSRSPLGFYVHLKNLSLNTNKRDLRNL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ D I D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ FV+K+ + T AF + + AL ++ + R V + R+E + I
Sbjct: 313 IKFVYKDERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIEC-YEK 371
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S + P K EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 432 YLLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQE 483
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 90 SIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
S P AK + + V I+ ++ LPF A +I+DFF + + DS+ + N G
Sbjct: 740 SFPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGL 799
Query: 148 PTGEAFVEFANAEDSKAAM 166
P GEA V N ++ AA+
Sbjct: 800 PIGEAIVAMTNYNEALAAV 818
>gi|28279187|gb|AAH45946.1| Zgc:56148 [Danio rerio]
Length = 314
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
++RG + A+ +G L+L G+PFSA KD++ +FF L D I
Sbjct: 129 EMRGRPASSTFSEARRQRDGDAPERAEVYLKLTGMPFSATKDNVHNFFAG--LKVDDILF 186
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
N G +G + V F ED+ + +DR +GSRYI++ + EE
Sbjct: 187 LKNPRGMFSGNSMVRFTTKEDAIEGLKRDRQYMGSRYIQITRCTEEEW 234
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GL +AG +DI +FF + + +HI G EAF+ FA+ ED++ AM++
Sbjct: 4 VIRLQGLRVTAGSEDIRNFFTGLRIPDGGVHII----GGELEEAFIIFASDEDARRAMSR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
+ + LF SS EM L
Sbjct: 60 SGGCIKGSTVNLFLSSKSEMQSVL 83
>gi|403281594|ref|XP_003932266.1| PREDICTED: probable RNA-binding protein 19 [Saimiri boliviensis
boliviensis]
Length = 960
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L ++ I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAVRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKKALKCNREYMGGRYIEVF 365
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + G
Sbjct: 333 TGYIFVDFSNEEEVKKALKCNREYMGGRYIEVFREKNVPTTKGPPKNSAKSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RMLGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AFV F E + KA D R + + PS+
Sbjct: 444 GFAFVTFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|148233440|ref|NP_001079497.1| uncharacterized protein LOC379184 [Xenopus laevis]
gi|27694912|gb|AAH43858.1| MGC53694 protein [Xenopus laevis]
gi|80477878|gb|AAI08882.1| MGC53694 protein [Xenopus laevis]
Length = 658
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + E +HIT G GEAF+ F ED++ AM+
Sbjct: 4 VIRLQGLPLVAGSTDIRHFFSGLHIPEGGVHIT----GGKHGEAFIIFPTDEDARRAMSC 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ I+LF SS EM L R
Sbjct: 60 SGGFIKKSQIDLFLSSKAEMQHTLEMNR 87
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G + L GLP++A + D+ +FF F + + I+ + +G G+A+V+FA +D+KA+++
Sbjct: 152 GYVFLNGLPYTADEHDVKEFFHGFDV--EDINFCVRQNGDKDGKAYVKFATFQDAKASLS 209
Query: 168 KDRMTLGSRYIELFPSSHEEMDEALSR 194
+ + +G RYI L S+ EA+S+
Sbjct: 210 RHKEYIGHRYIFLKLSNEHAWIEAVSK 236
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 19/195 (9%)
Query: 17 MDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D+ F V +N G+A+ +L R+++ +G RY+ + S + +A+
Sbjct: 175 FDVEDINFCVRQNGDKDGKAYVKFATFQDAKASLSRHKEYIGHRYIFLKLSNEHAWIEAV 234
Query: 76 AN------EVSDVRGGSP------HRSIP----RAKSHDEGKDSAVHTGI--LRLRGLPF 117
+ V + R SP H P R+ + + H L L +P+
Sbjct: 235 SKTNRREESVHNNREWSPRFSSKNHSRSPGHGSRSPKMHRTRSRSPHNQQFHLHLLNMPY 294
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
S K DI +F D + + + ++ G T E FV N + + + + L R
Sbjct: 295 SVDKKDIKLYFGDPDIPDSQVKFLLDRKGVRTREGFVSVKNEKFYQKCLGLHKGLLNGRE 354
Query: 178 IELFPSSHEEMDEAL 192
+ ++P + ++M E +
Sbjct: 355 VWVYPIAGKDMSELI 369
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 149
S P+ KS +D + + LR PF+ GK ++ FF F + E I + +S G
Sbjct: 385 SSPKRKS----RDRSNLKRCMYLRNFPFNVGKSEVQKFFAGFPVDERDIFLLYDSRGVGL 440
Query: 150 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
GEA V F + + A ++ T + L S E+M E
Sbjct: 441 GEALVIFPSEHHAILAEGLNQQTFLGTEVLLRRISEEQMKE 481
>gi|326917887|ref|XP_003205226.1| PREDICTED: RNA-binding protein 12B-like [Meleagris gallopavo]
Length = 671
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 30/195 (15%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-----IA 76
+L H+N G P L+R+RQ MG+R++E+ + + + + +
Sbjct: 203 ILIKHRNGLNNGNCLVKFATPGDALEGLKRHRQYMGQRFIEISPTTEERWIEYGGRVDMP 262
Query: 77 NEV--------SDVRGG-----------SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 117
NE+ S G SP R R++S G++ +H LR L
Sbjct: 263 NEMDHFFCKEHSPRSSGYMHARKHSHSRSPRRQRTRSRS-PSGQEYYIH-----LRNLST 316
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
+ K D+ +FF D +S I I R T +AFV N D +AA+ R L +R
Sbjct: 317 NVEKRDLREFFPDLDISNKQIKILSEKHQRRTRDAFVMLRNERDYQAALECHRKVLLNRS 376
Query: 178 IELFPSSHEEMDEAL 192
+ +FP S + M + L
Sbjct: 377 VYIFPISRKSMLKML 391
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSC 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ IELF SS EM + R
Sbjct: 60 SGGFIKDSRIELFLSSKAEMQNTIEMSR 87
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK- 168
+RL+ LPF A ++I+DFF + + +S+ + N G P+G+A V N E++ A+ +
Sbjct: 597 IRLKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMTAINEL 656
Query: 169 -DRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 657 NDR-PIGPRKVKL 668
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRG+P+SA +D + DF + D + + + +G G V+FA D+ + +
Sbjct: 176 LFLRGIPYSATEDAVRDFLSGIRV--DGVILIKHRNGLNNGNCLVKFATPGDALEGLKRH 233
Query: 170 RMTLGSRYIELFPSSHEEMDEALSR 194
R +G R+IE+ P++ E E R
Sbjct: 234 RQYMGQRFIEISPTTEERWIEYGGR 258
Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
+ K+ + T +AF +L AL+ +R+ + R V +F R+ K + S
Sbjct: 339 ILSEKHQRRTRDAFVMLRNERDYQAALECHRKVLLNRSVYIFPISRKSMLKMLD---SYE 395
Query: 83 RGGSPHRSIP----RAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFVLSE 135
R S R+ P KS+ EG H+G+ +R PF K ++ FF+ F + E
Sbjct: 396 RKRSQERAHPGQAITEKSYREG-----HSGLKICAYVRNFPFDVTKVEVRRFFERFDIDE 450
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
D I++ + G GEA V+F + E + A
Sbjct: 451 DDIYLLYDDKGVGLGEALVKFKSEEQAMKA 480
>gi|76154254|gb|AAX25744.2| SJCHGC00921 protein [Schistosoma japonicum]
Length = 805
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP SA +I FF + E +HI ++G +AF+ FA ED++ AM
Sbjct: 4 IIRLQNLPISANAANIRRFFSGLSIPEGGVHIVGGTEG----DAFIAFATDEDARKAMLL 59
Query: 169 DRMTLGSRYIELFPSSHEEM 188
DR T+ + LF SS EM
Sbjct: 60 DRQTINGASVRLFLSSKAEM 79
>gi|226482640|emb|CAX73919.1| RNA-binding protein 12 [Schistosoma japonicum]
Length = 922
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP SA +I FF + E +HI ++G +AF+ FA ED++ AM
Sbjct: 4 IIRLQNLPISANAANIRRFFSGLSIPEGGVHIVGGTEG----DAFIAFATDEDARKAMLL 59
Query: 169 DRMTLGSRYIELFPSSHEEM 188
DR T+ + LF SS EM
Sbjct: 60 DRQTINGASVRLFLSSKAEM 79
>gi|348551182|ref|XP_003461409.1| PREDICTED: probable RNA-binding protein 19-like [Cavia porcellus]
Length = 961
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K+ KA S G
Sbjct: 333 TGYIFVDFSSEEEVKKALKCNREYMGGRYIEVFREKQAPVAKAPPKNSSKAWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H +++ +P
Sbjct: 387 -RTLGENEEEEDLADSGRLFVRNLPYTSTEEDLEKLFSAYGPLSE--LHYPIDTLTKKPK 443
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 444 GFAFVTFLFPEHAVKAYAEVDGQVFQGRMLHVLPST 479
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 85 GSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 143
GSP R K+ ++ + + +T ++LRG PF+ + ++ +F L +I I N
Sbjct: 272 GSPQVRKAEVEKAANQKEPTTPYT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRN 327
Query: 144 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
+ G TG FV+F++ E+ K A+ +R +G RYIE+F
Sbjct: 328 AHGNKTGYIFVDFSSEEEVKKALKCNREYMGGRYIEVF 365
>gi|326437182|gb|EGD82752.1| hypothetical protein PTSG_03403 [Salpingoeca sp. ATCC 50818]
Length = 1027
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 111 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 170
+L+GLPF + + +FF LS I ++ R G AFV+FA D KAA+ K R
Sbjct: 399 KLQGLPFRCTEQQVREFFSP--LSVVDIRFLLDRRKRGKGVAFVDFATKRDYKAALKKHR 456
Query: 171 MTLGSRYIELFPSSHEEM 188
TLG R++E+ PS ++
Sbjct: 457 QTLGPRFVEVLPSKTRKL 474
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 17 MDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
+ +VD+ F+ + + G AF AL+++RQ +G R+VEV SK ++
Sbjct: 419 LSVVDIRFLLDRRKRGKGVAFVDFATKRDYKAALKKHRQTLGPRFVEVLPSKTRKLPALK 478
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDE-GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VL 133
E G + P D+ G D TG + +R L + +DDI F+ F L
Sbjct: 479 PTE------GREAKVYPAPLGEDDKGLD---ETGRIFVRNLAYVCTEDDIRALFEKFGPL 529
Query: 134 SEDSIHITMNSDG-RPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
SE +H+ +++ +P G AFV F + E++ KA D R + L P+ + D
Sbjct: 530 SE--VHMPLDTQTKKPKGIAFVTFLHPENAVKAFTQLDASVFKGRLLHLLPARTRDSDSG 587
Query: 192 L 192
+
Sbjct: 588 I 588
>gi|268566957|ref|XP_002639856.1| Hypothetical protein CBG12209 [Caenorhabditis briggsae]
Length = 965
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP +A D+ FF + + ++HI G GE FV FA+ ED++ AMA+
Sbjct: 4 IIRLKNLPMTAAAADVRTFFSGLKIPDGAVHII----GGDEGEVFVGFASDEDARLAMAR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR + I LF SS E ++
Sbjct: 60 DRAKIHGAEIRLFLSSKSEQSSVIA 84
>gi|224046497|ref|XP_002200032.1| PREDICTED: RNA-binding protein 12B isoform 1 [Taeniopygia guttata]
gi|449494411|ref|XP_004175301.1| PREDICTED: RNA-binding protein 12B isoform 2 [Taeniopygia guttata]
Length = 699
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 22/187 (11%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA------- 74
+L H+N G+ P L+R+RQ MG+R++E+ + + + +
Sbjct: 203 ILIKHRNGLNNGDCLIKCATPSDALEGLKRHRQYMGQRFIEISPTTEERWIECGGQIDMP 262
Query: 75 ------IANEVSDVRGGSPH-------RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGK 121
+ + S G H RS R ++H + S + LR L F+ K
Sbjct: 263 DEMDHFLCEDHSPRSSGYVHSRKHSHSRSPRRQRTHS--RSSPGQEYYIHLRNLCFNVEK 320
Query: 122 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
D+ DFF + + I I + + T +AFV N + +AA+ R L +R + +F
Sbjct: 321 RDLRDFFPELDIHSKQIKILTDKHQKRTRDAFVMLRNEREYQAALECHRKVLINRPVYIF 380
Query: 182 PSSHEEM 188
P S + M
Sbjct: 381 PISRKSM 387
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPPDIRRFFLGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSC 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ IELF SS EM + R
Sbjct: 60 SGGFIKDSRIELFLSSKAEMQNTIEMSR 87
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK--D 169
L+ LPF A ++I+DFF + + +S+ + N G P+G+A V N E++ AA+ + D
Sbjct: 627 LKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMAAINELND 686
Query: 170 RMTLGSRYIEL 180
R +G R ++L
Sbjct: 687 R-PIGPRKVKL 696
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 17/159 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
+ K+ K T +AF +L + AL+ +R+ + R V +F R+ K I +
Sbjct: 339 ILTDKHQKRTRDAFVMLRNEREYQAALECHRKVLINRPVYIFPISRKSMLKIIDSCERK- 397
Query: 83 RGGSPHRSIPR--------AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 134
RS+ R KS+ EG S + + +R PF K ++ FF F +
Sbjct: 398 ------RSLDRDHLGQAISEKSYREGHSSPRNC--VYVRNFPFDVSKIEVRKFFARFDID 449
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 173
ED I++ + G GEA V+F + E + A +R T
Sbjct: 450 EDDIYLLYDEKGVGLGEALVKFKSEEQAMKAENLNRQTF 488
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRG+P+SA + ++ F + D + + + +G G+ ++ A D+ + +
Sbjct: 176 LFLRGIPYSATEVEVRAFLSGIRV--DGVILIKHRNGLNNGDCLIKCATPSDALEGLKRH 233
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
R +G R+IE+ P++ E E
Sbjct: 234 RQYMGQRFIEISPTTEERWIEC 255
>gi|303275530|ref|XP_003057059.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461411|gb|EEH58704.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 386
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM----------NSDGRPTGEAFVEFA 157
GILR+RG+P A K D+++FF ED + I + + TGEAFVEF+
Sbjct: 284 GILRVRGMPPEATKADVVNFFYGMGAEEDKVKIIIAPGMANLAGSHPGAMSTGEAFVEFS 343
Query: 158 --NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
+A +AA+ KDR LG + + +F SS EE+ GR
Sbjct: 344 GDDANIQQAAL-KDRAVLGGKPVSVFRSSLEEVQRVALMGR 383
>gi|324497877|gb|ADY39587.1| putative fusili isoform B [Hottentotta judaicus]
Length = 112
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
+RLRGLP+ A + I++F ++ + +H+ N+ G+P+GE F++ ++E S A
Sbjct: 17 IRLRGLPYEAQVEHILEFLGEYAKNIVFQGVHMVYNAQGQPSGETFIQM-DSEHSAYIAA 75
Query: 168 KDR----MTLG--SRYIELFPSSHEEMDEALSRG 195
+ R M G RYIE+F S ++M+ L+ G
Sbjct: 76 QQRHHRYMVFGKKQRYIEVFQCSVDDMNLVLTGG 109
>gi|332250675|ref|XP_003274476.1| PREDICTED: probable RNA-binding protein 19 [Nomascus leucogenys]
Length = 997
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG F
Sbjct: 320 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFA 375
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 376 DFSNEEEVKQALKCNREYMGGRYIEVF 402
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + G R
Sbjct: 370 TGYIFADFSNEEEVKQALKCNREYMGGRYIEVFREKNIPTTKGAPKNTTKSWQGRILREN 429
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
+ E +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 430 EEEEDLAE-------SGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 480
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G FV F E + KA D R + + PS+
Sbjct: 481 GFGFVTFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 516
>gi|432101444|gb|ELK29626.1| Cysteine desulfurase, mitochondrial [Myotis davidii]
Length = 815
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F+ D V EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I++ P + +
Sbjct: 394 FYLDIV--EDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKK 451
Query: 187 EMDEAL 192
M E +
Sbjct: 452 GMLEKI 457
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 73
+DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 396 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----K 451
Query: 74 AIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
+ ++ +R + + + + + EG S+ + +PFS K D++ F +
Sbjct: 452 GMLEKIDMIRKRLQNFNYDQREMMLNPEGDVSSTKV-CAHITNIPFSITKMDVLQFLEGI 510
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 511 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 569
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 740 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 799
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 800 LNDR-PIGSRKVKL 812
>gi|321463278|gb|EFX74295.1| hypothetical protein DAPPUDRAFT_307392 [Daphnia pulex]
Length = 929
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP+SA DI FF + E +HI G G+AF+ F+ ED++ MA
Sbjct: 4 IIRLQNLPWSANAADIRQFFHGLSIPEGGVHIV----GGQLGDAFIAFSTDEDARQGMAS 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D L ++L+ SS EM + + R
Sbjct: 60 DGGMLKDSRVKLYLSSRTEMQKIIEETR 87
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+ GLP SA + DI DFF D + I I + + P G A+ +FA+ ++++ A+ K+
Sbjct: 641 ITGLPPSALERDIGDFFSDVGVIPQIIEIVYDEERMPVGNAYCQFASMQEAERALDKNGG 700
Query: 172 TLGSRYIEL 180
+G + +
Sbjct: 701 FMGGHTVSV 709
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++ L +P A DI+DFF+ F ++E + +G PTG+A V F + ++++ A+
Sbjct: 854 VIALSNVPHKAIIADILDFFRGFQVNEKCVIRRFGPNGEPTGDARVAFLSPDEAELAV 911
>gi|213511062|ref|NP_001133976.1| probable RNA-binding protein 19 [Salmo salar]
gi|209156026|gb|ACI34245.1| Probable RNA-binding protein 19 [Salmo salar]
Length = 912
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 9/153 (5%)
Query: 44 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDS 103
+V+ AL++N+ MG RY+EVFR+ + +A+ E GS RS R DE ++
Sbjct: 330 EVEKALKKNKDYMGGRYIEVFRTSVKGEGRAVRRE-----KGS-ERSFTRELKDDEEEED 383
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 163
+G L +R LP++ ++++ D F + + N +P G AFV + E++
Sbjct: 384 VAESGRLFIRNLPYTCTEEELQDLFSKHGPLAEVVFPIDNLTKKPKGYAFVSYMIPENAV 443
Query: 164 AAMAK-DRMTLGSRYIELFPSS--HEEMDEALS 193
A+A+ D R + L PS+ E+ D A S
Sbjct: 444 TALAQLDGHIFQGRMLHLLPSTLKKEKADSAHS 476
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + + +F L +I I N+ G TG +V+ + E+ + A+ K
Sbjct: 280 TVKLRGCPFNVKEQQVREFMTP--LKPAAIRIIKNATGNKTGYIYVDMRSEEEVEKALKK 337
Query: 169 DRMTLGSRYIELFPSS 184
++ +G RYIE+F +S
Sbjct: 338 NKDYMGGRYIEVFRTS 353
>gi|327282636|ref|XP_003226048.1| PREDICTED: probable RNA-binding protein 19-like isoform 2 [Anolis
carolinensis]
Length = 938
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 13/156 (8%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+RN + MG RY+E+F +E+ K D P R+
Sbjct: 331 TGYVFVDFNNEEEVQKALKRNHEYMGGRYIELF---YEEHSKKTKPSSKD-----PARTW 382
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R K DE + +G L +R LP+++ ++D+ F + LSE IH ++ +P
Sbjct: 383 QRTKKVDEEDEDLSDSGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--IHFPIDGLTKKPK 440
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV + E + A A+ D R + + PS+
Sbjct: 441 GFAFVTYMFPEHAVKAFAEVDGQVFQGRMLHVLPST 476
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G + + ++LRG PF+ + ++ +F L +I I N+ G TG FV+F N
Sbjct: 284 GANEPTTSYTVKLRGAPFNVTEQNVREFL--VPLRPVAIRIVRNAHGNKTGYVFVDFNNE 341
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E+ + A+ ++ +G RYIELF H + + S+
Sbjct: 342 EEVQKALKRNHEYMGGRYIELFYEEHSKKTKPSSK 376
>gi|327282634|ref|XP_003226047.1| PREDICTED: probable RNA-binding protein 19-like isoform 1 [Anolis
carolinensis]
Length = 945
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 13/156 (8%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+RN + MG RY+E+F +E+ K D P R+
Sbjct: 331 TGYVFVDFNNEEEVQKALKRNHEYMGGRYIELF---YEEHSKKTKPSSKD-----PARTW 382
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R K DE + +G L +R LP+++ ++D+ F + LSE IH ++ +P
Sbjct: 383 QRTKKVDEEDEDLSDSGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--IHFPIDGLTKKPK 440
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV + E + A A+ D R + + PS+
Sbjct: 441 GFAFVTYMFPEHAVKAFAEVDGQVFQGRMLHVLPST 476
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G + + ++LRG PF+ + ++ +F L +I I N+ G TG FV+F N
Sbjct: 284 GANEPTTSYTVKLRGAPFNVTEQNVREFL--VPLRPVAIRIVRNAHGNKTGYVFVDFNNE 341
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E+ + A+ ++ +G RYIELF H + + S+
Sbjct: 342 EEVQKALKRNHEYMGGRYIELFYEEHSKKTKPSSK 376
>gi|75071008|sp|Q5RFT7.1|RB12B_PONAB RecName: Full=RNA-binding protein 12B; AltName: Full=RNA-binding
motif protein 12B
gi|55725003|emb|CAH89370.1| hypothetical protein [Pongo abelii]
Length = 761
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
+ +ELF SS EM + +
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTI 83
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GSP R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSPERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYI 178
ED I++ + G GEA V+F + E + KA R LG+ +
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGTEVL 471
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV-- 79
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 80 SDVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|402887773|ref|XP_003907256.1| PREDICTED: probable RNA-binding protein 19 [Papio anubis]
Length = 998
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++ +F L +I I N+ G TG FV
Sbjct: 321 KPANQKEPTTCHT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKTGYIFV 376
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 377 DFSNEEEVKQALKCNREYMGGRYIEVF 403
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K + G
Sbjct: 371 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNIPTTNVAPKNTTKSWQG------ 424
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 425 -RMLGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 481
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AFV F E KA D R + + PS+
Sbjct: 482 GFAFVTFMFPEHGVKAYSEVDGQVFQGRMLHVLPST 517
>gi|221129839|ref|XP_002156393.1| PREDICTED: epithelial splicing regulatory protein 2-like [Hydra
magnipapillata]
Length = 489
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK-AAMAKDR 170
+R LP+ D+I+ FF++F + DS+ I DGR +G+A + F + D++ A A +R
Sbjct: 417 IRNLPYEVTPDEILQFFRNFPVIADSVRIHYLEDGRCSGDAIISFRGSRDARDAVQALNR 476
Query: 171 MTLGSRYIELF 181
LG R +ELF
Sbjct: 477 KNLGRRKVELF 487
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
S + G+LR+ LP +A DI FKD + IH+ + +DG+ G AF+ F N D+
Sbjct: 3 SRTNAGVLRVDRLPLNATPGDIRRHFKDHGARPEDIHLVLEADGKHNGSAFLTFTNQGDA 62
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDE 190
+ + L + + + S+ E ++
Sbjct: 63 AHGLNANDSLLKDKRLAVNESNPAEFNK 90
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 115 LPFSAGKDDIMDFFKDFVLSEDSIHITMNS----DGRPTGEAFVEFANAEDSKAAMAKDR 170
LP++A + DI DFF+ VL+ D I + N G+P G A VEF + D++ + D
Sbjct: 232 LPYNATEVDIQDFFRP-VLTRD-IFLIRNKVGKYIGKPNGNAVVEFFSESDAREVLKCDG 289
Query: 171 MTLGSRYIELFPSSHEEMDEAL 192
G R + + EE+ A+
Sbjct: 290 KRFGQRNAVVQRARKEEIISAI 311
>gi|109098882|ref|XP_001106082.1| PREDICTED: probable RNA-binding protein 19 [Macaca mulatta]
Length = 998
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++ +F L +I I N+ G TG FV
Sbjct: 321 KPANQKEPTTCHT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKTGYIFV 376
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 377 DFSNEEEVKQALKCNREYMGGRYIEVF 403
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K + G
Sbjct: 371 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTNVAPKNTTKSWQG------ 424
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 425 -RMLGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 481
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AFV F E + KA D R + + PS+
Sbjct: 482 GFAFVTFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 517
>gi|449284118|gb|EMC90699.1| RNA-binding protein 12B [Columba livia]
Length = 698
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 20/186 (10%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-----IA 76
+L H+N G+ P LQR+RQ MG+R++E+ S + + + +
Sbjct: 203 ILIKHRNGLSNGDCLVKFATPGDALEGLQRHRQYMGQRFIEISPSTEERWIEYGGTVDMP 262
Query: 77 NEVSD--VRGGSP------------HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKD 122
NE+ SP H PR + + + LR L + K
Sbjct: 263 NEMDHFLCEDRSPRSSGYMHSRKHSHSRSPR-RQRTRSRSPPTQEYYIHLRNLSTNVEKR 321
Query: 123 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182
D+ DFF D + I + + R T +AFV + D +AA+ R L +R + +FP
Sbjct: 322 DLRDFFPDLDICSKQIKLLTDKHQRRTRDAFVLLRSERDYQAALECHRKVLLNRPVYIFP 381
Query: 183 SSHEEM 188
S + M
Sbjct: 382 ISKKSM 387
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSC 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ IELF SS EM + R
Sbjct: 60 SGGFIKDSRIELFLSSKAEMQNTIEMSR 87
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRG+P+SA +D++ FF + D + + + +G G+ V+FA D+ + +
Sbjct: 176 LYLRGIPYSATEDEVRAFFSG--IHVDGVILIKHRNGLSNGDCLVKFATPGDALEGLQRH 233
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +G R+IE+ PS+ E E
Sbjct: 234 RQYMGQRFIEISPSTEERWIE 254
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
H +RL+ LPF A ++I+DFF + + +S+ + N G P+G+A + N E++ AA
Sbjct: 620 HGVPIRLKNLPFKATPNEILDFFYGYRVIPESVCVQYNKQGLPSGDAIIAMTNYEEAMAA 679
Query: 166 MAK--DRMTLGSRYIEL 180
+ + DR +G R ++L
Sbjct: 680 INELNDR-PIGPRKVKL 695
Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANEVS 80
L K+ + T +AF +L AL+ +R+ + R V +F ++ K I
Sbjct: 339 LLTDKHQRRTRDAFVLLRSERDYQAALECHRKVLLNRPVYIFPISKKSMLKIIDSCERRR 398
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTG---ILRLRGLPFSAGKDDIMDFFKDFVLSEDS 137
P ++IP K + EG H+G + +R PF K ++ FF F + ED
Sbjct: 399 SQDRDHPGQAIPE-KGYREG-----HSGPKTCVYVRNFPFDVSKIEVQKFFVRFDIDEDD 452
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 170
I++ + G GEA V+F + E + A +R
Sbjct: 453 IYLLCDDKGVGLGEALVKFKSEEQAMKAENLNR 485
>gi|432909266|ref|XP_004078148.1| PREDICTED: RNA-binding protein 12B-like [Oryzias latipes]
Length = 631
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++ L GLPFS ++ I +FFK L + I + N G+ G+AFV F ED+ A+ K
Sbjct: 133 VVFLNGLPFSVTENQICEFFKG--LETNEIVLLKNHRGQNNGKAFVRFVTREDAMEALKK 190
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSR 194
+ +G+RY+E+ ++ E A R
Sbjct: 191 NMEYIGTRYVEVCTTTINEWYRATGR 216
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIAN-----EVSD--VRGGSP-HRSIPRAKSHDE 99
AL++N + +G RYVEV + E+Y+A V D RG P HR R H
Sbjct: 187 ALKKNMEYIGTRYVEVCTTTINEWYRATGRMPMGLNVDDNFERGRMPDHRQ--RISPHTR 244
Query: 100 GKDSAVHTG--------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
+ + + L L + K+DI F+ L D I + G+ T
Sbjct: 245 SRSPMMQRHAPASEEEYCVLLDNLSYGMEKEDIKQMFRGVKLDNDQILHLTDPAGKRTRS 304
Query: 152 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
AFV F + D A++ ++ L +R++ + P S E M
Sbjct: 305 AFVLFKSFHDYNRAISNEKKLLYNRWVNIRPISRENM 341
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GL +AG +DI FF + + +HI G EAF+ FA+ ED++ AM +
Sbjct: 4 VIRLQGLKVTAGSEDIRKFFTGLKIPDGGVHII----GGDHEEAFIIFASDEDARRAMTR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSR 194
+ + L SS EM L R
Sbjct: 60 SGGQIKGSPVTLLLSSKTEMQNVLER 85
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAKDR 170
++ LPF K +IMDFF F +SE + + + G G+A V F + AE + R
Sbjct: 382 VKNLPFDVRKVEIMDFFHGFNVSESRVSVLQDHKGAGVGQALVLFGSEAEAMEVLCLNGR 441
Query: 171 MTLGSRYI 178
LGS I
Sbjct: 442 RLLGSEVI 449
>gi|380818506|gb|AFE81126.1| putative RNA-binding protein 19 [Macaca mulatta]
gi|383412169|gb|AFH29298.1| putative RNA-binding protein 19 [Macaca mulatta]
Length = 960
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++ +F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K + G
Sbjct: 333 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTNVAPKNTTKSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RMLGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AFV F E + KA D R + + PS+
Sbjct: 444 GFAFVTFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|355786561|gb|EHH66744.1| hypothetical protein EGM_03792 [Macaca fascicularis]
Length = 960
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++ +F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K + G
Sbjct: 333 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTNVAPKNTTKSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RMLGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AFV F E + KA D R + + PS+
Sbjct: 444 GFAFVTFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|118778307|ref|XP_308564.3| AGAP007221-PB [Anopheles gambiae str. PEST]
gi|116132320|gb|EAA04285.4| AGAP007221-PB [Anopheles gambiae str. PEST]
Length = 787
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP +A D+ FFK + + +HI G G+AF+ F+ ED++ AMA
Sbjct: 4 IIRLQNLPLAANASDVRSFFKGLSIPDGGVHIV----GGALGDAFIAFSTDEDARQAMAL 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ + + I L SS EM + + + R
Sbjct: 60 NGGCIKNEPISLLLSSRAEMQKVIEQAR 87
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+++ L G +I FFK +++ I + + +GR TG A+++F E K A+++D
Sbjct: 362 VKISNLESVTGYGEIRRFFKSHLITTQGIKMINDQNGRRTGTAYIQFLRKEGKKFALSRD 421
Query: 170 RMTLGSRYIELFPSSHEEMDEAL 192
+ + + + +E D A+
Sbjct: 422 GSAVRRMRVRIESITDQEFDSAV 444
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T + L L + +D+ FF++F L ++I +G TGEA V F N +D++ A+
Sbjct: 707 TSTVGLLNLAYKTTVEDVQKFFQEFNLPLENIRRRFLDNGNATGEAMVRFRNHQDAEKAL 766
>gi|355564713|gb|EHH21213.1| hypothetical protein EGK_04225 [Macaca mulatta]
Length = 960
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++ +F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K + G
Sbjct: 333 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTNVAPKNTTKSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RMLGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AFV F E + KA D R + + PS+
Sbjct: 444 GFAFVTFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|126322103|ref|XP_001368765.1| PREDICTED: RNA-binding protein 12B-like [Monodelphis domestica]
Length = 745
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+SA +D++ FF + D I + + GR G+ V+FA + D+ + +
Sbjct: 169 LFLRGLPYSATEDEVRAFFPGLCV--DGIILLKHPTGRNNGDCLVKFATSHDALGGLQRH 226
Query: 170 RMTLGSRYIELFPSSHEEM 188
R +GSR++E+ P+S ++
Sbjct: 227 RHYMGSRFVEVSPASEQQW 245
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM++
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + R
Sbjct: 60 SGGFIKDSPVELFLSSKTEMQNTIEMKR 87
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 23/187 (12%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-----IA 76
+L H + G+ LQR+R MG R+VEV + Q++ I
Sbjct: 196 ILLKHPTGRNNGDCLVKFATSHDALGGLQRHRHYMGSRFVEVSPASEQQWIDCGGSADIK 255
Query: 77 NEV---SDVRGGSPHRSIPRAKSHDEGKDSAV------------HTGILRLRGLPFSAGK 121
+EV S+ R SP R I A S + + + + L+ L S K
Sbjct: 256 DEVHFRSEER--SPQRGINDAHSKKRSRSKSPRRMKRRSRSPHKYGFYVHLKNLSLSVEK 313
Query: 122 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
DI +FF+D L+ D I + D + TG AFV F D +A+A + L R + +
Sbjct: 314 RDIKNFFRDTDLASDQIKF-LYKDQKRTGSAFVMFKTLRDYNSALALHKFILFHRQVLID 372
Query: 182 PSSHEEM 188
P S + M
Sbjct: 373 PISKKTM 379
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM--A 167
+++ LPF A ++I+DFF + + +S+ I N G P GEA V N +++ AA+
Sbjct: 671 IKIMNLPFKANVNEILDFFHGYGVIPESVSIQYNEQGLPLGEAIVAMVNYDEAMAAINDL 730
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 731 NDR-PVGPRKVKL 742
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 12/175 (6%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ F++K+ K TG AF + + AL ++ + R V + ++ K I
Sbjct: 330 IKFLYKDQKRTGSAFVMFKTLRDYNSALALHKFILFHRQVLIDPISKKTMLKFIEC-YEK 388
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTG---ILRLRGLPFSAGKDDIMDFFKDFVLSE 135
R GS R P K++ EG H+G + +R PF K ++ FF F + E
Sbjct: 389 KRSGSVGRERPGHIPEKTYREG-----HSGPKLCIYIRNFPFDVTKVEVQKFFAGFSIDE 443
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
D +++ + G GEA V+F + E + A + +R + L S E+M E
Sbjct: 444 DDVYLLYDDKGVGLGEALVKFKSEEQAMKAESLNRRRFLGTEVLLRLISEEQMQE 498
>gi|392352553|ref|XP_003751242.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 955
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F L +V AL+ NR+ MG RY+EVFR K + S RG S
Sbjct: 333 TGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREK----------QASAARGAPKSSSA 382
Query: 92 P---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DG 146
P R E ++ +G L +R L +++ ++D+ F + LSE +H ++S
Sbjct: 383 PWQGRTLGEHEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--LHYPIDSLTK 440
Query: 147 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
+P G AFV F E + A A+ D R + + PS+
Sbjct: 441 KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 479
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++++F L +I I N+ G TG FV+ ++ E+ K A+
Sbjct: 295 TVKLRGAPFNVTEKNVLEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKC 352
Query: 169 DRMTLGSRYIELF 181
+R +G RYIE+F
Sbjct: 353 NREYMGGRYIEVF 365
>gi|380019192|ref|XP_003693498.1| PREDICTED: uncharacterized protein LOC100871735 [Apis florea]
Length = 879
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RGLPF DI+DFF D + IH+ ++ +G+P GE F EF A+++ A AK+ +
Sbjct: 649 MRGLPFQTIDRDILDFFSDIGIVPHRIHM-LHQNGKPAGECFCEFDTADEALRATAKNGL 707
Query: 172 TLGSRY--IELFP 182
G IEL P
Sbjct: 708 PFGKNVPTIELVP 720
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+L L +PF A ++I++FF DF + +++ N G PTG+A V FA+ +++ A+
Sbjct: 804 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 861
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
+E K+S+ + +R +P SA +D+ F+ + +D + + ++ G G A+V+F+
Sbjct: 432 NENKNSSGGGHCVEVRNMPLSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFS 491
Query: 158 NAEDSKAAMAKDRMTLGS 175
AE + A+ R GS
Sbjct: 492 KAEGKELALGTTRFVRGS 509
>gi|158286040|ref|XP_001688002.1| AGAP007221-PA [Anopheles gambiae str. PEST]
gi|157020278|gb|EDO64651.1| AGAP007221-PA [Anopheles gambiae str. PEST]
Length = 1197
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP +A D+ FFK + + +HI G G+AF+ F+ ED++ AMA
Sbjct: 4 IIRLQNLPLAANASDVRSFFKGLSIPDGGVHIV----GGALGDAFIAFSTDEDARQAMAL 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ + + I L SS EM + + + R
Sbjct: 60 NGGCIKNEPISLLLSSRAEMQKVIEQAR 87
Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 32/191 (16%)
Query: 8 VLCTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66
V H +VL VH + TGE G + A ++ QN+GRR V
Sbjct: 986 VFAFFGHDGFQAKNVLLVHNERGGRTGECLVEFGSASEAAHAESKSSQNLGRRKVFASHL 1045
Query: 67 KRQEYYKAIANEVSDVRGGSPHRSIP--------------------------RAKSHDEG 100
R + +A + +G P +P +++ D
Sbjct: 1046 DRGQVADLMARFHAIAQGLQPSHWLPDHLRNENSNGGGGSGGGGGGGGSGSGGSQNDDPE 1105
Query: 101 KDSAVHTGILR-----LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 155
K+ V G R L L + +D+ FF++F L ++I +G TGEA V
Sbjct: 1106 KNQGVGCGPYRTSTVGLLNLAYKTTVEDVQKFFQEFNLPLENIRRRFLDNGNATGEAMVR 1165
Query: 156 FANAEDSKAAM 166
F N +D++ A+
Sbjct: 1166 FRNHQDAEKAL 1176
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%)
Query: 87 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 146
P R+ R ++ + T L LR + F ++D+ FF ++ + N G
Sbjct: 949 PRRANSRFAPSNDSSEMFQRTNWLLLRNVDFHVYEEDVFAFFGHDGFQAKNVLLVHNERG 1008
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 178
TGE VEF +A ++ A +K LG R +
Sbjct: 1009 GRTGECLVEFGSASEAAHAESKSSQNLGRRKV 1040
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+++ L G +I FFK +++ I + + +GR TG A+++F E K A+++D
Sbjct: 528 VKISNLESVTGYGEIRRFFKSHLITTQGIKMINDQNGRRTGTAYIQFLRKEGKKFALSRD 587
Query: 170 RMTLGSRYIELFPSSHEEMDEAL 192
+ + + + +E D A+
Sbjct: 588 GSAVRRMRVRIESITDQEFDSAV 610
>gi|410976696|ref|XP_003994750.1| PREDICTED: probable RNA-binding protein 19 [Felis catus]
Length = 994
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-IANEVSDVRGGSPHRS 90
TG F +V AL+ NR+ MG RY+EVFR K K + N G
Sbjct: 326 TGYIFVDFSSEEEVKQALKCNREYMGGRYIEVFREKNAPTAKGPLKNSAKPWPG------ 379
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRP 148
R +E ++ +G L +R LP+S+ ++D+ F F LSE +H ++S +P
Sbjct: 380 --RTLGENEEEEDLADSGRLFVRNLPYSSTEEDLEQLFSRFGPLSE--LHYPIDSLTKKP 435
Query: 149 TGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 436 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 472
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+RLRG PF+ + ++ +F L +I I N+ G TG FV+F++ E+ K A+
Sbjct: 288 TVRLRGAPFNVTEKNVTEFLAP--LRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQALKC 345
Query: 169 DRMTLGSRYIELF 181
+R +G RYIE+F
Sbjct: 346 NREYMGGRYIEVF 358
>gi|291388277|ref|XP_002710735.1| PREDICTED: RNA binding motif protein 12-like [Oryctolagus
cuniculus]
Length = 864
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGDVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGYIKDSSVELFLSSRAEMQKTIQMKR 87
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S E+ E
Sbjct: 215 RSFMGSRFIEVMQGSEEQWIE 235
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 14/180 (7%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ H + + G+A + L+ +R MG R++EV + +++ + N + +
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEEQWIELGGNTIKE 243
Query: 82 ------VRGGSPHRSIPR-------AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
SP R I R +KS + + + L+ L S K D+ +FF
Sbjct: 244 DDVPMRSEEHSPARGIDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSINKKDLRNFF 303
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+D L+ + I + D R T AFV F +D A+ + L R + + P S ++M
Sbjct: 304 RDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVHVDPISRKQM 362
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 790 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAVVAMINYNEAMAAIKDL 849
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 850 NDR-PVGPRKVKL 861
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED-SKAAMAKDR 170
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E +KA R
Sbjct: 403 IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQATKAERLNRR 462
Query: 171 MTLGSRYI 178
LG+ +
Sbjct: 463 RFLGTEVL 470
>gi|328790346|ref|XP_003251410.1| PREDICTED: hypothetical protein LOC100578631 [Apis mellifera]
Length = 878
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RGLPF DI+DFF D + IH+ ++ +G+P GE F EF A+++ A AK+ +
Sbjct: 648 MRGLPFQTIDRDILDFFSDIGIVPHRIHM-LHQNGKPAGECFCEFDTADEALRATAKNGL 706
Query: 172 TLGSRY--IELFP 182
G IEL P
Sbjct: 707 PFGKNVPTIELVP 719
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+L L +PF A ++I++FF DF + +++ N G PTG+A V FA+ +++ A+
Sbjct: 803 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 860
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 57 GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLP 116
GRR F++ ++ NE S RG S R + ++G H + +R +P
Sbjct: 401 GRRNPHAFQTNSSQFN--FDNERS--RG-----STNRFSNENKGNSGGGHC--VEVRNMP 449
Query: 117 FSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175
SA +D+ F+ + +D + + ++ G G A+V+F+ AE + A+ R GS
Sbjct: 450 LSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFSKAEGKELALGTTRFVRGS 508
>gi|351694750|gb|EHA97668.1| Putative RNA-binding protein 19 [Heterocephalus glaber]
Length = 955
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K+ K + G
Sbjct: 328 TGYIFVDFSSEEEVKKALKCNREYMGGRYIEVFREKQVPMAKEPLKSSTKAWQG------ 381
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 382 -RMLGENEEEEDLADSGRLFVRNLPYTSTEEDLEKLFSTYGPLSE--LHFPIDSLTKKPK 438
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS--HEEMDEALSRG 195
G AFV F E + KA A D R + + PS+ E +EA + G
Sbjct: 439 GFAFVTFLFPEHAVKAYSAVDGQVFQGRMLHVLPSTIRKEASEEAGAPG 487
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 16/111 (14%)
Query: 83 RGGSP-HRSIP--------RAKSH---DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
R SP HR+ P RA+S ++ + + HT ++LRG PF+ + ++ +F
Sbjct: 254 RAASPGHRAPPEHGRPQDSRAESEKPTNQKEPTTCHT--VKLRGAPFNVTEKNVTEFLAP 311
Query: 131 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
L +I I N+ G TG FV+F++ E+ K A+ +R +G RYIE+F
Sbjct: 312 --LKPVAIRIVRNAHGNKTGYIFVDFSSEEEVKKALKCNREYMGGRYIEVF 360
>gi|195583688|ref|XP_002081648.1| GD25607 [Drosophila simulans]
gi|194193657|gb|EDX07233.1| GD25607 [Drosophila simulans]
Length = 628
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F E A+ +
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ +S E+
Sbjct: 340 HKHHIGTRYIEVYRASGED 358
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 16/83 (19%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 334 DMALKRHKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 377
Query: 106 HTGILRLRGLPFSAGKDDIMDFF 128
I+R+RGLP+ A ++DFF
Sbjct: 378 AQVIIRMRGLPYDATAKQVLDFF 400
>gi|354491414|ref|XP_003507850.1| PREDICTED: RNA-binding protein 12B-A-like [Cricetulus griseus]
Length = 850
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 103 SAVH--TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
SA H G+ L GLPF AG +I FFK + + +HI G GEAF+ FA E
Sbjct: 6 SAGHYCCGLSSLLGLPFIAGPGEIPHFFKGLTIPDGGVHII----GGKVGEAFIIFATDE 61
Query: 161 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
D++ A+++ + +ELF SS EM + + R
Sbjct: 62 DARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMKR 97
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 166 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAVVKFASCIDASGGLKCH 223
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 224 RSFMGSRFIEVMQGSEQQWIE 244
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 16/182 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK-----AIA 76
+ H + + G+A + L+ +R MG R++EV + Q++ + A
Sbjct: 193 IFLKHHDGRNNGDAVVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAAKG 252
Query: 77 NEVSDVRGG--SPHRSIP----RAKSHDEG----KDSAVHTGILRLRGLPFSAGKDDIMD 126
+V +R SP R + R ++H + + + L L+ L S K D+ +
Sbjct: 253 GDVPCMRAEEHSPSRGMNDRYFRKRTHSKSPRRTRSRSPLGFYLHLKNLSLSIDKRDLRN 312
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
FFKD L+ + I + D R T AFV F N +D A+ + L R + + P S +
Sbjct: 313 FFKDTDLTNEQIKF-LYKDERRTRYAFVMFKNLKDYNTALGLHKTVLQYRPVFIDPISRK 371
Query: 187 EM 188
+M
Sbjct: 372 QM 373
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK- 168
+++ LPF A ++I+DFF + + DS+ I N G P GEA + N ++ AA+ +
Sbjct: 776 VKIMNLPFKANANEILDFFHGYKVIPDSVSIQYNEQGLPIGEAIIAMINYNEAIAAIKEL 835
Query: 169 DRMTLGSRYIEL 180
+ +G R ++L
Sbjct: 836 NGRPVGPRKVKL 847
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAK 168
+ +R PF K ++ FF DF L E+ I++ + G GEA V F + E + KA
Sbjct: 412 IYIRNFPFDVTKVEVQKFFVDFSLVENDIYLLYDDKGVGLGEALVRFKSEEQAMKAERLN 471
Query: 169 DRMTLGSRYI 178
R LG+ +
Sbjct: 472 RRRFLGTEVL 481
>gi|395512126|ref|XP_003760295.1| PREDICTED: RNA-binding protein 12B [Sarcophilus harrisii]
Length = 745
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+SA +D++ FF + D + + + GR G+ V+FA + D+ + +
Sbjct: 169 LFLRGLPYSATEDEVRAFFPGLCV--DGVILLKHPTGRNNGDCLVKFATSHDALGGLQRH 226
Query: 170 RMTLGSRYIELFPSSHEEM 188
R +GSR++E+ P+S ++
Sbjct: 227 RHYMGSRFVEVSPASEQQW 245
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM++
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + R
Sbjct: 60 SGGFIKDSPVELFLSSKTEMQNTIEMKR 87
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 23/187 (12%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-----IA 76
+L H + G+ LQR+R MG R+VEV + Q++ I
Sbjct: 196 ILLKHPTGRNNGDCLVKFATSHDALGGLQRHRHYMGSRFVEVSPASEQQWIDCGGSVDIK 255
Query: 77 NEV---SDVRGGSPHRSIPRAKSHDEGKDSAV------------HTGILRLRGLPFSAGK 121
+EV S+ R SP R I A S + + + + L+ L S K
Sbjct: 256 DEVHFRSEER--SPQRGINDAHSKKRSRSKSPRRVKRRSRSPHKYGFYVHLKNLSLSVEK 313
Query: 122 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
DI +FF+D L+ D I + D + TG AFV F D +A+A + L R + +
Sbjct: 314 RDIKNFFRDTDLASDQIKF-LYKDQKRTGSAFVMFKTLRDYNSALALHKFILFHRQVLID 372
Query: 182 PSSHEEM 188
P S + M
Sbjct: 373 PISKKTM 379
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM--A 167
+++ LPF A ++I+DFF + + +S+ I N G P GEA V N +++ AA+
Sbjct: 671 IKIMNLPFKANVNEILDFFHGYGVIPESVSIQYNDQGLPLGEAIVAMVNYDEAMAAINDL 730
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 731 NDR-PVGPRKVKL 742
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 12/175 (6%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ F++K+ K TG AF + + AL ++ + R V + ++ K I
Sbjct: 330 IKFLYKDQKRTGSAFVMFKTLRDYNSALALHKFILFHRQVLIDPISKKTMLKFIEC-YEK 388
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTG---ILRLRGLPFSAGKDDIMDFFKDFVLSE 135
R GS R P K++ EG H+G + +R PF K ++ FF F + E
Sbjct: 389 KRSGSVGRERPGHIPEKNYREG-----HSGPKLCIYIRNFPFDVTKVEVQKFFAGFSIDE 443
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
D +++ + G GEA V+F + E + A + +R + L S E+M E
Sbjct: 444 DDVYLLYDDKGVGLGEALVKFKSEEQAMKAESLNRRRFLGTEVLLRLISEEQMQE 498
>gi|12851402|dbj|BAB29027.1| unnamed protein product [Mus musculus]
Length = 723
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A E
Sbjct: 70 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTATEG 129
Query: 80 SDV-----RGGSPHRSIP----RAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDF 127
D SP R I R +SH + + + + + L+ L + K D+ +
Sbjct: 130 GDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRARSRSPLGFYVHLKNLSLNTNKRDLRNL 189
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ D I D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 190 FRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKE 248
Query: 188 M 188
M
Sbjct: 249 M 249
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + + DGR G+A V+FA+ D+ +
Sbjct: 43 LFLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 100
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 101 RSFMGSRFIEVMQGSEQQWIE 121
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ FV+K+ + T AF + + AL ++ + R V + R+E + I
Sbjct: 200 IKFVYKDERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIEC-YEK 258
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S + P K EG + + +R LPF K ++ FF DF L ED I
Sbjct: 259 KRPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 318
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 319 YLLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQE 370
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 90 SIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
S P AK + + V I+ ++ LPF A +I+DFF + + DS+ + N G
Sbjct: 627 SFPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGL 686
Query: 148 PTGEAFVEFANAEDSKAAM 166
P GEA V N ++ AA+
Sbjct: 687 PIGEAIVAMTNYNEALAAV 705
>gi|431917851|gb|ELK17082.1| RNA-binding protein 12B [Pteropus alecto]
Length = 965
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 45 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGDVGEAFIIFATDEDARRAISR 100
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 101 SGGFIKDSSVELFLSSKAEMQKTIEMKR 128
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 891 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 950
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 951 NDR-PVGPRKVKL 962
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ ++D+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 197 LFLRGLPYLVNENDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 254
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 255 RSFMGSRFIEVMQGSEQQWIE 275
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ H + + G+A + L+ +R MG R++EV + Q++ + + + +
Sbjct: 224 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGSAIKE 283
Query: 82 ------VRGGSPHRSIP----RAKSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
SP R + R +SH + L L+ L S K D+ +F
Sbjct: 284 GDIPLRTEEHSPLRGVNDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSINKRDLKNF 343
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
FKD L+ + I + D R T AFV F +D A+ + L R + + P S ++
Sbjct: 344 FKDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVLVDPVSRKQ 402
Query: 188 M 188
M
Sbjct: 403 M 403
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 170
+R PF K ++ FF DF L ED I++ + G GEA V+F + E + KA R
Sbjct: 443 IRNFPFDVTKVEVQKFFADFSLEEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRR 502
Query: 171 MTLGSRYI 178
LG+ +
Sbjct: 503 RFLGTEVL 510
>gi|308485032|ref|XP_003104715.1| hypothetical protein CRE_24036 [Caenorhabditis remanei]
gi|308257413|gb|EFP01366.1| hypothetical protein CRE_24036 [Caenorhabditis remanei]
Length = 974
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP +A D+ FF + + ++HI G GE FV FA+ ED++ AM +
Sbjct: 4 IIRLKNLPITAAASDVRTFFSGLKIPDGAVHII----GGDEGEVFVGFASDEDARIAMTR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALS 193
DR + I L SS E + ++
Sbjct: 60 DRSLIHGAEIRLLLSSKSEQNSVIT 84
Score = 35.8 bits (81), Expect = 9.5, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
+L G P +D++DFF D+ +SI I DG TGE + + E+++ A
Sbjct: 899 VLTCNGFPKDVTLEDVVDFFIDYEPDRNSIRIRRGEDGVMTGECMLACMSPENARRA 955
>gi|159164255|pdb|2DNN|A Chain A, Solution Structure Of Rna Binding Domain In Rna-Binding
Protein 12
Length = 109
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 19 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 76
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 77 RMLMIQRYVEVSPATERQWVAA 98
>gi|91094045|ref|XP_968644.1| PREDICTED: similar to CG7879 CG7879-PA [Tribolium castaneum]
gi|270003124|gb|EEZ99571.1| hypothetical protein TcasGA2_TC001555 [Tribolium castaneum]
Length = 779
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
+ T + L LP +I DFF D + IH+ N G TG+AF EF ED+
Sbjct: 550 LDTDCINLTRLPLQTNNIEIADFFSDIGVRPTKIHLMSNRMGF-TGQAFCEFKTKEDAAQ 608
Query: 165 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
A+ KD + G + + P EEM+ L +
Sbjct: 609 ALKKDNSSFGPNIVSVQPFPREEMEHILQQ 638
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP+SA DI FF + E +HI G G+AF+ F+ ED++ A A+
Sbjct: 4 IIRLQNLPWSANALDIRQFFHGLSIPEGGVHIV----GGEQGDAFIAFSTDEDARQAFAR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ + I L SS EM + + R
Sbjct: 60 NNGKIKEIQISLMLSSRTEMQKVIEAAR 87
>gi|149412787|ref|XP_001509129.1| PREDICTED: RNA-binding protein 12B-like [Ornithorhynchus anatinus]
Length = 692
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPVDIRHFFSGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSC 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ IELF SS EM + R
Sbjct: 60 SGGFIKDSLIELFLSSKTEMQNTIEMSR 87
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 24/188 (12%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-----IA 76
+L H N + G+ F LQR+R MG R+VE+ + +Q++ + +
Sbjct: 192 ILLKHHNGRNNGDGFVKFATSHDALGGLQRHRHYMGPRFVEISPASQQQWVECGGGPDLE 251
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAV----------------HTGILRLRGLPFSAG 120
EV +R S RS PR + K + H + L+ L S
Sbjct: 252 MEVGRIR--SKERSPPRGMNDLRLKKRSRSRSPRRLRTRSRSPRGHGFYVHLKNLSLSTE 309
Query: 121 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180
K DI FF++ L+ + I + D + T AFV F D A+ + L R + +
Sbjct: 310 KKDIKAFFRNIDLTSNQIKF-LYKDQKRTRSAFVMFKTPRDYNEALCLHKAVLRQRPVHI 368
Query: 181 FPSSHEEM 188
P S + M
Sbjct: 369 DPISKKTM 376
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L L G+P+S + ++ FF L D + + + +GR G+ FV+FA + D+ + +
Sbjct: 165 LFLHGMPYSVTEGEVHAFFSG--LRVDGVILLKHHNGRNNGDGFVKFATSHDALGGLQRH 222
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
R +G R++E+ P+S ++ E
Sbjct: 223 RHYMGPRFVEISPASQQQWVEC 244
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM--A 167
+++R LPF A ++I+DFF + + +S+ I +N G P+G+A V + +++ AA+
Sbjct: 618 IKIRNLPFKATVNEILDFFHGYRVIPESVSIQLNEQGLPSGDAIVAMTDYDEAVAAVDEL 677
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 678 NDR-PVGPRKVKL 689
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ F++K+ K T AF + P + AL ++ + +R V + ++ K I
Sbjct: 327 IKFLYKDQKRTRSAFVMFKTPRDYNEALCLHKAVLRQRPVHIDPISKKTMLKFIDAYEGR 386
Query: 82 VRGGSPHRSIPRA---KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
G + P+A +S+ EG + +R PF K ++ FF F + E+ +
Sbjct: 387 GLGAADRERPPQAVPDRSYREGYPGPRLC--IYIRNFPFDVTKIEVQKFFAGFSVEEEDV 444
Query: 139 HITMNSDGRPTGEAFVEF 156
++ + G GEA V F
Sbjct: 445 YLLYDDKGVGLGEALVRF 462
>gi|417405481|gb|JAA49451.1| Putative conserved secreted protein precursor [Desmodus rotundus]
Length = 976
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPADIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 902 IKIMNLPFKANVNEILDFFHGYRIIPDSVRIQYNEQGLPTGEAIVAMVNYNEAMAAIKDL 961
Query: 168 KDRMTLGSRYIEL 180
DR +G R + L
Sbjct: 962 NDR-PVGPRKVRL 973
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 170
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA R
Sbjct: 404 MRNFPFDVTKVEVQKFFADFSLNEDDIYLLYDDKGVGLGEALVKFTSEEQAMKAERLNRR 463
Query: 171 MTLGS 175
LG+
Sbjct: 464 RFLGT 468
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+ H + + G+A + L+ +R MG R++EV + Q++ + ++
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGSTSKE 243
Query: 80 SDVRGGSPHRSIPRA-----------KSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDF 127
D+ + S PR S G + L+ L S K D+ +F
Sbjct: 244 GDIPMRTEEHSPPRGINDRHFRKRSHSRSPRRTRSRSPLGFYVHLKNLSLSINKRDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ + I + D R T AFV F +D A+ + L R + + P S ++
Sbjct: 304 FRDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVLVDPISRKQ 362
Query: 188 M 188
M
Sbjct: 363 M 363
>gi|432117035|gb|ELK37602.1| Heterogeneous nuclear ribonucleoprotein H [Myotis davidii]
Length = 188
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 125 MDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
M F L+ +HI ++ DGR TGEA VEFA ED+ AAM+KD+ + RY+EL S+
Sbjct: 53 MTFIIFSPLNPVRVHIAISPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELLNST 112
>gi|74096255|ref|NP_001027771.1| swan [Ciona intestinalis]
gi|31324620|gb|AAP48572.1| swan [Ciona intestinalis]
Length = 1075
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+ LP +AG DI FF + + +HI +DG AF+ F+ ED++ AM +
Sbjct: 6 VIRLKHLPLAAGTFDIRQFFSGLRIPDGGVHIIGGTDG----TAFILFSTDEDARQAMMR 61
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
D + + I+L SSH EM +
Sbjct: 62 DGQHVRATAIKLMLSSHTEMKTVI 85
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
+ ++R+ PF+ ++ + FF DF + D I GR +G FV+F+NA+D+ A
Sbjct: 627 QSCLVRIANSPFNCTEEAVRKFFSDFSIPHDGIQFVYKG-GRRSGHIFVKFSNADDAVKA 685
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDE 190
+D + R + + SS +M E
Sbjct: 686 ALRDNQRMMGRNVLVGQSSVAQMKE 710
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 11/161 (6%)
Query: 37 CVLGYPLQVDF--ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG-SPHRSIPR 93
C++ + VD ALQ++R+ +G R++ + S +++ +R G S RS
Sbjct: 108 CLIKFKTVVDKEDALQKDRKYLGGRFIRITTSSERQWLLVSTQSCETIRPGESRKRSKTI 167
Query: 94 AKSHDEGKDSAVHTGI-----LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR- 147
S + K S + + + +RGLP +A + FF + + + I +DG+
Sbjct: 168 TSSENTPKRSRALSPLKNENCVEVRGLPQNADYHIMSGFFSGLNIVDGGLFI--ENDGKI 225
Query: 148 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
G AFVEFA D K A+ +D + + + + S + M
Sbjct: 226 CKGRAFVEFAAYADYKNALVRDGDMIDGKQVRVIGLSRQNM 266
Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 36/59 (61%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+++ L + ++D+++FF F DS+ + + G+PTG+ + F + E ++AA+A+
Sbjct: 1001 VKMSNLSYDITREDLLEFFSGFDPLPDSVQLMYSQGGKPTGDGVISFPHIEPARAAIAQ 1059
>gi|417405465|gb|JAA49443.1| Putative rna-binding protein rrm superfamily [Desmodus rotundus]
Length = 968
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR + K + G
Sbjct: 335 TGYVFVDFSSEEEVKKALKCNREYMGGRYIEVFREQNVPIAKGTLKTSAKPWQG------ 388
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F F LSE +H ++S +P
Sbjct: 389 -RTLGENEEEEDLADSGRLFVRNLPYTSTEEDLEQLFSKFGPLSE--LHYPIDSLTKKPK 445
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 446 GFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 481
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++++F L +I I N+ G TG FV+F++ E+ K A+
Sbjct: 297 TVKLRGAPFNVTEKNVLEFLAP--LKPAAIRIVRNAHGNKTGYVFVDFSSEEEVKKALKC 354
Query: 169 DRMTLGSRYIELF 181
+R +G RYIE+F
Sbjct: 355 NREYMGGRYIEVF 367
>gi|410923148|ref|XP_003975044.1| PREDICTED: probable RNA-binding protein 19-like [Takifugu rubripes]
Length = 941
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 11/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG + L QV+ AL++N+ +G RY+EVFR E K D R R+
Sbjct: 343 TGYVYVDLHSAEQVEAALKKNKDYIGGRYIEVFRVDNSEKAK------RDKRDREVDRNF 396
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF-KDFVLSEDSIHITMNSDGRPT- 149
R DE ++ +G L +R LP++ ++++ + F K LSE +H ++S + T
Sbjct: 397 TRTLKEDEEEEDVAESGRLFVRNLPYTCTEEELKELFAKHGPLSE--LHFPIDSLTKKTK 454
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AF+ + E++ AA+A+ D R + L PS+
Sbjct: 455 GFAFITYMIPENAVAALAQLDGHVFQGRMLHLLPST 490
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG+PF+ + I +F L +I I N G TG +V+ +AE +AA+ K
Sbjct: 305 TVKLRGVPFNVKELQIREFMTP--LKPAAIRIGKNDSGNRTGYVYVDLHSAEQVEAALKK 362
Query: 169 DRMTLGSRYIELF 181
++ +G RYIE+F
Sbjct: 363 NKDYIGGRYIEVF 375
>gi|440797920|gb|ELR18994.1| fibronectin type III domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 740
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+ +DI FF ++ + + I +N DGRPTG+ FV FA+A+ + A+
Sbjct: 681 VVKMRGLPWEVTPEDIARFFATLDIAPEGVSIALNFDGRPTGDGFVCFASADHATLAL 738
>gi|444525890|gb|ELV14185.1| RNA-binding protein 12B [Tupaia chinensis]
Length = 1012
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG D+ FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDGGVHII----GGEVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ + +ELF SS EM + + R
Sbjct: 60 SGGLIKNSSVELFLSSKAEMQKTIEMKR 87
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 18/182 (9%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ H + + G+A + L+ +R MG R++EV + Q++ N V +
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIDLGGNAVKE 243
Query: 82 VRGGSPHRSIP-----------RAKSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMD 126
G P RS R SH + S L L+ LP S K D+ +
Sbjct: 244 --GDVPVRSEEQSPKGINDRHFRKWSHSKSPRSTRSRSPLGFYVHLKNLPLSINKRDLRN 301
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
FF+D L+ + I + D R T AFV F +D A++ + L R + + P S +
Sbjct: 302 FFRDTDLANEQIRF-LYKDERRTRYAFVTFKTLKDYNTALSLHKTVLQYRPVHVDPVSRK 360
Query: 187 EM 188
+M
Sbjct: 361 QM 362
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 938 IKIMNLPFKANVNEILDFFHGYRIVPDSVSIQYNDQGLPTGEAIVAMINYNEAMAAIKDL 997
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 998 NDR-PVGPRKVKL 1009
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEM 188
R +GSR+IE+ S ++
Sbjct: 215 RSFMGSRFIEVMQGSEQQW 233
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ F++K+ + T AF + AL ++ + R V V R++ K IA
Sbjct: 313 IRFLYKDERRTRYAFVTFKTLKDYNTALSLHKTVLQYRPVHVDPVSRKQMLKFIAC-YEK 371
Query: 82 VRGGSPHRSIP--RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
R GS + P + + + S I +R PF K ++ FF DF L+E+ I+
Sbjct: 372 KRPGSVEKERPGHLLQKYSQQNYSGQKLCIY-IRNFPFDVTKVEVQKFFADFSLAEEDIY 430
Query: 140 ITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYI 178
+ + G GEA V+F + E + KA R LG+ +
Sbjct: 431 LLYDDKGVGLGEALVKFKSEEQAVKAERLNRRRFLGTEVL 470
>gi|348588498|ref|XP_003480003.1| PREDICTED: RNA-binding protein 12B-like [Cavia porcellus]
Length = 850
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGDIGEAFIIFATDEDARRAICR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 101 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
+ S L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+
Sbjct: 148 RPSKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCI 205
Query: 161 DSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
D+ + R +GSR+IE+ S + E
Sbjct: 206 DASGGLKCHRSFMGSRFIEVMQGSERQWIE 235
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 776 VKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 835
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 836 NDR-PVGPRKVKL 847
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ H + + G+A + L+ +R MG R++EV + +++ + + +
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSERQWIEFGGDAIEK 243
Query: 82 ------VRGGSPHRSIP----RAKSHDEGK---DSAVHTGI-LRLRGLPFSAGKDDIMDF 127
G SP R + R +SH + S G + L+ L + K D+ +F
Sbjct: 244 GEIPMRTEGHSPPRGVNDRHFRKRSHSKSPRRTRSRSPVGFYVHLKNLSLNVSKRDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ + I + R T AFV F +D K A+ + L R + + P S ++
Sbjct: 304 FRDIDLTNEQIRFLYKDEKR-TRYAFVTFKTQKDYKTALGFHKTILQHRPVHVDPVSKKQ 362
Query: 188 M 188
M
Sbjct: 363 M 363
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 15/165 (9%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR-SKRQ------EYYKA 74
+ F++K+ K T AF AL ++ + R V V SK+Q Y K
Sbjct: 314 IRFLYKDEKRTRYAFVTFKTQKDYKTALGFHKTILQHRPVHVDPVSKKQMLKFIESYEKK 373
Query: 75 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 134
+ R G H S ++ G+ ++ +R PF K ++ FF DF L+
Sbjct: 374 RPGSIEKERSG--HVSQKYSQEGYSGQKLCIY-----IRNFPFDVTKVEVQKFFADFSLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAED-SKAAMAKDRMTLGSRYI 178
ED I++ + G GEA V+F + E +KA R LG+ +
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQATKAERLNRRRFLGTEVL 471
>gi|395730677|ref|XP_003775769.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Pongo abelii]
Length = 352
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 114 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 173
GLP+ A K DI + F L+ +H M R TG+A V+FA E++ AA ++DR+++
Sbjct: 238 GLPYKATKSDIYNLFSPPNLAR--VHTEMGPHERVTGKADVKFATQEEAVAATSRDRVSM 295
Query: 174 GSRYIELF 181
RY+ELF
Sbjct: 296 WHRYMELF 303
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 26 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 85
H+ + +GEAF LG + AL+++R++MG R + VF+S E +
Sbjct: 48 HRXGRQSGEAFVELGXEENIKMALEKDRESMGHRRIAVFKSHXTEVSWVLKK-------- 99
Query: 86 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 135
HR A S + G L LRGL K++I+ FF VL E
Sbjct: 100 --HRGPNSAGSANYGF-------ALELRGLASGCXKEEIVQFFS--VLXE 138
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
++RL G + +D D + + + H + GR +GEAFVE E+ K A
Sbjct: 12 VVRLHGPSWPCSVEDAQDVLSNCTMPHRAAGEFH-PHHRXGRQSGEAFVELGXEENIKMA 70
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ KDR ++G R I +F S E+ L + R
Sbjct: 71 LEKDRESMGHRRIAVFKSHXTEVSWVLKKHR 101
>gi|119612105|gb|EAW91699.1| RNA binding motif protein 12B [Homo sapiens]
Length = 707
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 5/165 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYI 178
ED I++ + G GEA V+F + E + KA R LG+ +
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGTEVL 471
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|156401535|ref|XP_001639346.1| predicted protein [Nematostella vectensis]
gi|156226474|gb|EDO47283.1| predicted protein [Nematostella vectensis]
Length = 90
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 101 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI--HITMNSDGRPTGEAFVEFAN 158
+D + I+R+ GLPF + K D+ FF ++ + H + + G+ TG AFV F +
Sbjct: 9 QDQEATSTIVRMFGLPFESSKRDLYKFFNGLKIASIDLLKHKSGKNQGKNTGVAFVVFKS 68
Query: 159 AEDSKAAMAKDRMTLGSRYIEL 180
D+ A+ DR +G RYIEL
Sbjct: 69 NNDASKALKMDRSYIGHRYIEL 90
>gi|440906208|gb|ELR56498.1| Putative RNA-binding protein 19 [Bos grunniens mutus]
Length = 947
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K + + + HT ++LRG PF+ + ++M+F L +I + N+ G TG FV
Sbjct: 286 KPASQKEPTTPHT--VKLRGAPFNVTEKNVMEFLAP--LKPAAIRVVRNAHGNKTGYVFV 341
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F++ E+ + A+ +R +G RYIE+F
Sbjct: 342 DFSSEEEVRKALKCNREYMGGRYIEVF 368
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR + KA G P +
Sbjct: 336 TGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNVPAAKAPLK-----NGAKPWQGW 390
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
+ H+E +D A +G L +R LP+++ ++D+ F + +SE +H ++S +P
Sbjct: 391 TLGE-HEEEEDLA-DSGRLFVRNLPYTSSEEDLEKLFSRYGPVSE--LHYPIDSLTKKPK 446
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 447 GFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 482
>gi|443700255|gb|ELT99307.1| hypothetical protein CAPTEDRAFT_198265, partial [Capitella teleta]
Length = 141
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEF-ANAEDSKAAM 166
+RLRGLPF A DI+ F + S +H+ N+ G P+GEAF++ ++A +
Sbjct: 12 IRLRGLPFEATVTDILTFLGEHSRSIVFQGVHMVYNAQGTPSGEAFIQMDSDASAESTTL 71
Query: 167 AKDRMTLGS----RYIELFPSSHEEMDEALSRG 195
K R + S RYIE+ S E+M+ L+ G
Sbjct: 72 NKHRKFMISNNKKRYIEVLQCSGEDMNLVLTSG 104
>gi|194214277|ref|XP_001492007.2| PREDICTED: probable RNA-binding protein 19 [Equus caballus]
Length = 962
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 11/104 (10%)
Query: 85 GSPHRS--IPRAKSHDE-----GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS 137
G P RS P A++ E + + HT ++LRG PF+ + ++++F L +
Sbjct: 268 GIPSRSRKPPEARAETERPAHQKEPTTPHT--VKLRGAPFNVTEKNVVEFLAP--LKPVA 323
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
I I N+ G TG FV+F++ E+ K A+ +R +G RYIE+F
Sbjct: 324 IRIVRNAHGNKTGYVFVDFSSEEEVKKALKCNREYMGGRYIEVF 367
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K + G + +
Sbjct: 335 TGYVFVDFSSEEEVKKALKCNREYMGGRYIEVFREKN----------IPTAEGPPKNSAK 384
Query: 92 P---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DG 146
P R +E ++ +G L +R LP+++ ++++ F + LSE +H ++
Sbjct: 385 PWQGRTLGENEEEEDLADSGRLFVRNLPYTSTEEELEQLFSRYGPLSE--LHYPIDGLTK 442
Query: 147 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
+P G AFV F E + A A+ D R + + PS+
Sbjct: 443 KPKGFAFVTFMFPEHAVRAYAEVDGQVFQGRMLHVLPST 481
>gi|324500976|gb|ADY40441.1| RNA-binding protein 12 [Ascaris suum]
Length = 1088
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ LP SA DI FF + + ++HI G P G+AF+ FA ED++ AM
Sbjct: 4 IIRLQRLPLSANAADIRTFFAGLRIPDGAVHIV----GGPEGDAFIGFATDEDARQAMRY 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ + + + L SS EM+ +++ R
Sbjct: 60 NDRRIHDQRVRLLLSSRVEMEAVIAKAR 87
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++ G P +D+ FF F L E S+ I ++ DG TGE + +++ A+
Sbjct: 1008 VISCHGFPPDVTINDVAQFFDKFSLIESSVRIKLDDDGNSTGECLLAVGTPQEAAKAV 1065
>gi|350592780|ref|XP_003483535.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Sus
scrofa]
Length = 161
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 138 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184
+HI + +DGR TGEA VEF ED+ AAM+KD+ + RYIELF +S
Sbjct: 38 VHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNS 84
>gi|395818217|ref|XP_003782532.1| PREDICTED: RNA-binding protein 12B isoform 3 [Otolemur garnettii]
Length = 996
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 14 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGKIGEAFIIFATDEDARRAISR 69
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
+ +ELF SS EM + +
Sbjct: 70 SGGFIKDSSVELFLSSKAEMQKTI 93
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ H + + G+A + L+ +R MG R++EV + Q++ + N V +
Sbjct: 194 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 253
Query: 82 V------RGGSPHRSIP----RAKSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
+ SP R I R +SH + L L+ L S K DI +F
Sbjct: 254 LDVPVRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSINKRDIRNF 313
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F D L+ + I + D R T AFV F +D A+ + L R + + P S ++
Sbjct: 314 FSDIDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVYIDPVSRKQ 372
Query: 188 M 188
M
Sbjct: 373 M 373
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 167 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 224
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 225 RSFMGSRFIEVMQGSEQQWIE 245
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 922 IKVMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 981
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 982 NDR-PVGPRKVKL 993
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ F++K+ + T AF + + AL ++ + R V + R++ K I
Sbjct: 324 IRFLYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVYIDPVSRKQMLKFIEC-YEK 382
Query: 82 VRGGSPHRSIPR--AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
R GS + P A+ + E S+ I +R PF K ++ FF DF L+ED I+
Sbjct: 383 KRPGSVEKERPGHVAQKYSEEGHSSQKLCIY-IRNFPFDVTKVEVQKFFADFSLAEDDIY 441
Query: 140 ITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
+ + G GEA V+F + E + KA R LG+
Sbjct: 442 LLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 478
>gi|351713473|gb|EHB16392.1| RNA-binding protein 12B [Heterocephalus glaber]
Length = 959
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGDIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 101 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
+ S L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+
Sbjct: 148 RPSKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCI 205
Query: 161 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
D+ + R +GSR+IE+ S ++ E
Sbjct: 206 DASGGLKCHRSFMGSRFIEVMQGSEQQWIEC 236
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
S+ +++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++
Sbjct: 878 SSGRVTPVKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEA 937
Query: 163 KAAMA--KDRMTLGSRYIEL 180
AA+ DR +G R ++L
Sbjct: 938 MAAIKDLNDR-PVGPRKVKL 956
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 19/183 (10%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ H + + G+A + L+ +R MG R++EV + Q++ + + V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIECGGDAVK- 242
Query: 82 VRGGSPHR----SIPR------------AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIM 125
+G P R S PR +KS + + + L+ L + K D+
Sbjct: 243 -KGEIPMRAEEHSPPRGLNDRHFRKRTHSKSPRRTRSRSPVGFYVHLKNLSLNVSKRDLR 301
Query: 126 DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185
+FF+D L+ + I + R T AFV F +D A+ + L R I + P S
Sbjct: 302 NFFRDIDLTNEQIRFLYKDEKR-TRYAFVTFKTLKDYNTALGFHKTVLQHRPIHIDPVSK 360
Query: 186 EEM 188
++M
Sbjct: 361 KQM 363
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ F++K+ K T AF + AL ++ + R + + +++ K I
Sbjct: 314 IRFLYKDEKRTRYAFVTFKTLKDYNTALGFHKTVLQHRPIHIDPVSKKQMLKFIECYEKK 373
Query: 82 VRGGS--PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
GGS RS ++ + + S I +R PF K ++ FF DF L+ED I+
Sbjct: 374 RPGGSIDKERSGHVSQKYSQEGYSGQKLCIY-IRNFPFDVTKVEVQKFFADFSLAEDDIY 432
Query: 140 ITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
+ + G GEA V+F + E + KA R LG+
Sbjct: 433 LLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 469
>gi|426247328|ref|XP_004017438.1| PREDICTED: probable RNA-binding protein 19 [Ovis aries]
Length = 916
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-IANEVSDVRGGSPHRS 90
TG F +V AL+ NR+ MG RY+EVFR + KA + N +G R+
Sbjct: 291 TGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNVPAAKAPLKNGAKPWQG----RT 346
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRP 148
+ H+E +D A +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 347 L---GEHEEEEDLA-DSGRLFVRNLPYTSSEEDLEKLFSRYGPLSE--LHYPIDSLTKKP 400
Query: 149 TGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 401 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 437
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
+ K ++M+F L +I I N+ G TG FV+F++ E+ + A+ +R +G RY
Sbjct: 262 APAKKNVMEFLAP--LKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRY 319
Query: 178 IELF 181
IE+F
Sbjct: 320 IEVF 323
>gi|345790896|ref|XP_543410.3| PREDICTED: probable RNA-binding protein 19 [Canis lupus familiaris]
Length = 970
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-IANEVSDVRGGSPHRS 90
TG F ++ AL+ NR+ MG RY+E+FR K K + N +G
Sbjct: 336 TGYIFVDFRSEEEIKQALKCNREYMGGRYIEIFREKNVPTTKGPLKNSAKPWQG------ 389
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRP 148
R +E ++ +G L +R LP+++ ++D+ F F LSE +H ++S +P
Sbjct: 390 --RTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSE--LHYPIDSLTKKP 445
Query: 149 TGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 446 KGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPST 482
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++++F L +I I N+ G TG FV+F + E+ K A+
Sbjct: 298 TVKLRGAPFNVTEKNVLEFLAP--LRPVAIRIVRNAHGNKTGYIFVDFRSEEEIKQALKC 355
Query: 169 DRMTLGSRYIELF 181
+R +G RYIE+F
Sbjct: 356 NREYMGGRYIEIF 368
>gi|395818213|ref|XP_003782530.1| PREDICTED: RNA-binding protein 12B isoform 1 [Otolemur garnettii]
gi|395818215|ref|XP_003782531.1| PREDICTED: RNA-binding protein 12B isoform 2 [Otolemur garnettii]
Length = 986
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGKIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
+ +ELF SS EM + +
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTI 83
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ H + + G+A + L+ +R MG R++EV + Q++ + N V +
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 82 V------RGGSPHRSIP----RAKSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
+ SP R I R +SH + L L+ L S K DI +F
Sbjct: 244 LDVPVRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSINKRDIRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F D L+ + I + D R T AFV F +D A+ + L R + + P S ++
Sbjct: 304 FSDIDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVYIDPVSRKQ 362
Query: 188 M 188
M
Sbjct: 363 M 363
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 912 IKVMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 971
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 972 NDR-PVGPRKVKL 983
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ F++K+ + T AF + + AL ++ + R V + R++ K I
Sbjct: 314 IRFLYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVYIDPVSRKQMLKFIEC-YEK 372
Query: 82 VRGGSPHRSIPR--AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
R GS + P A+ + E S+ I +R PF K ++ FF DF L+ED I+
Sbjct: 373 KRPGSVEKERPGHVAQKYSEEGHSSQKLCIY-IRNFPFDVTKVEVQKFFADFSLAEDDIY 431
Query: 140 ITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
+ + G GEA V+F + E + KA R LG+
Sbjct: 432 LLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
>gi|379642961|ref|NP_001243849.1| RNA-binding protein 12B [Equus caballus]
Length = 976
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
S+ +++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++
Sbjct: 895 SSGRVTPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEA 954
Query: 163 KAAMA--KDRMTLGSRYIEL 180
AA+ DR +G R ++L
Sbjct: 955 VAAIKDLNDR-PVGPRKVKL 973
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+ H + + G+A + L+ +R MG R++EV + Q++ + A +
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGKAVKE 243
Query: 80 SDV----RGGSPHRSIP----RAKSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
SDV SP R I R +SH + L L+ L S K D+ +F
Sbjct: 244 SDVPMRTEKHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSINKRDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ + I + D R T AFV F +D A+ + L R + + P S ++
Sbjct: 304 FRDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVHIDPVSRKQ 362
Query: 188 M 188
M
Sbjct: 363 M 363
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 170
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA R
Sbjct: 404 IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRR 463
Query: 171 MTLGS 175
LG+
Sbjct: 464 RFLGT 468
>gi|170057361|ref|XP_001864450.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
gi|167876772|gb|EDS40155.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
Length = 1174
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 61 VEVFRSKRQEYYKAIANEVSDVRGGSPH--RSIPRAKSHDEGKDSAVHTGILRLRGLPFS 118
E RS++ A +N GG P R+ P H V IL + LPF
Sbjct: 1058 AESLRSQK----GAPSNSSQQSLGGGPGEMRTNPCLNDH------PVPGSILSMGNLPFR 1107
Query: 119 AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-AKDRMTLGSRY 177
A +DI+DFFK + ++ D + DGR TG+A V F + +D+ A+ +M +G R
Sbjct: 1108 ARNEDIVDFFKQYNITLDDVKRRYLPDGRSTGDAMVRFQSPQDAHRALETHQQMRIGGRE 1167
Query: 178 IELF 181
+ ++
Sbjct: 1168 LRMW 1171
Score = 35.8 bits (81), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 77 NEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 134
N DV GG P++ R +S +D+ D +++ L + G +I FF +S
Sbjct: 322 NSGGDV-GGPPNQQHYRQQSSIYDDEMDGQS----IKISNLETATGYGEIRRFFSGQAIS 376
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+ I + + +G+ TG A+V F + + AM+++ + +++ S E D+A+
Sbjct: 377 SNGIKMINDPNGKRTGVAYVRFLRKDAKRYAMSRNGQNMRRSAVKVESISDREFDDAI 434
>gi|311253626|ref|XP_003125614.1| PREDICTED: RNA-binding protein 12B [Sus scrofa]
Length = 986
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 912 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 971
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 972 NDR-PVGPRKVKL 983
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N +
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAMKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
D+ + S PR +SH + L L+ L S K D+ +F
Sbjct: 244 DDIPMRTEEHSQPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSINKRDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ + I + D R T AFV F +D A+ + L R + + P S ++
Sbjct: 304 FRDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVHIDPVSRKQ 362
Query: 188 M 188
M
Sbjct: 363 M 363
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 170
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA R
Sbjct: 404 IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGIGLGEALVKFKSEEQAMKAERLNRR 463
Query: 171 MTLGS 175
LG+
Sbjct: 464 RFLGT 468
>gi|30794154|ref|NP_083038.1| probable RNA-binding protein 19 [Mus musculus]
gi|73621449|sp|Q8R3C6.1|RBM19_MOUSE RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
gi|19343654|gb|AAH25619.1| RNA binding motif protein 19 [Mus musculus]
gi|21707580|gb|AAH34010.1| RNA binding motif protein 19 [Mus musculus]
gi|148687830|gb|EDL19777.1| RNA binding motif protein 19 [Mus musculus]
Length = 952
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 19/159 (11%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F L +V AL+ NR MG RY+EVFR K+ + G P +
Sbjct: 332 TGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTAR-----------GPPKSTT 380
Query: 92 P---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DG 146
P R +E ++ +G L +R L +++ ++D+ F + LSE +H ++S
Sbjct: 381 PWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--LHYPIDSLTK 438
Query: 147 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
+P G AFV F E + A A+ D R + + PS+
Sbjct: 439 KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 477
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++++F L +I I N+ G TG FV+ ++ E+ K A+
Sbjct: 294 TVKLRGAPFNVTEKNVIEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKC 351
Query: 169 DRMTLGSRYIELF 181
+R +G RYIE+F
Sbjct: 352 NRDYMGGRYIEVF 364
>gi|432106419|gb|ELK32212.1| RNA-binding protein 12B [Myotis davidii]
Length = 954
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG D+ FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDGGVHII----GGEMGEAFIIFATDEDARRAVSR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + L R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKILEMKR 87
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G A V+FA+ D+ +
Sbjct: 157 LFLRGLPYVVNEDDVRVFFSGLCV--DGVIFLKHDDGRNNGHAMVKFASCIDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEM 188
R +GSR+IE+ S ++
Sbjct: 215 RSYMGSRFIEVMQGSEQQW 233
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I G PTGEA V N ++ AA+
Sbjct: 880 IKIMNLPFKANVNEILDFFHGYRIIPDSVRIQYTEQGLPTGEAIVAMINYNEAMAAIKDL 939
Query: 168 KDRMTLGSRYIEL 180
DR +G R + L
Sbjct: 940 NDR-PVGPRKVRL 951
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 170
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA R
Sbjct: 404 IRNFPFDVTKAEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRR 463
Query: 171 MTLGS 175
LG+
Sbjct: 464 RFLGT 468
>gi|332238333|ref|XP_003268351.1| PREDICTED: RNA-binding protein 12B isoform 1 [Nomascus leucogenys]
gi|332238335|ref|XP_003268352.1| PREDICTED: RNA-binding protein 12B isoform 2 [Nomascus leucogenys]
gi|332238337|ref|XP_003268353.1| PREDICTED: RNA-binding protein 12B isoform 3 [Nomascus leucogenys]
gi|441647142|ref|XP_004090789.1| PREDICTED: RNA-binding protein 12B [Nomascus leucogenys]
gi|441647145|ref|XP_004090790.1| PREDICTED: RNA-binding protein 12B [Nomascus leucogenys]
Length = 1001
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GSP R P S ++ ++ + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSPERERPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I++ + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAVINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|426235843|ref|XP_004023424.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B-like [Ovis
aries]
Length = 983
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAVSR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 909 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 968
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 969 NDR-PVGPRKVKL 980
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEM 188
R +GSR+IE+ S ++
Sbjct: 215 RSFMGSRFIEVMQGSEKQW 233
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+ H + + G+A + L+ +R MG R++EV + +++ + +
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEKQWIDFGGTLIKE 243
Query: 80 SDVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
D+ + + PR +SH + A L L+ L S K D+ +F
Sbjct: 244 GDISMRTEEHTSPRGINDRHFRKRSHSKSPRRACSRSPLGFYVHLKNLSVSINKRDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ + I + D R T AFV F +D A+ + L R + + P S E+
Sbjct: 304 FRDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVYIDPVSREQ 362
Query: 188 M 188
M
Sbjct: 363 M 363
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 170
+R PF K ++ FF DF L+ED I + + G GEA V+F + E + KA R
Sbjct: 404 IRNFPFDVTKVEVQKFFADFSLAEDDICLLYDDKGVGLGEALVKFKSEEQAVKAERLNRR 463
Query: 171 MTLGS 175
LG+
Sbjct: 464 RFLGT 468
>gi|297683295|ref|XP_002819319.1| PREDICTED: RNA-binding protein 12B isoform 2 [Pongo abelii]
gi|297683297|ref|XP_002819320.1| PREDICTED: RNA-binding protein 12B isoform 3 [Pongo abelii]
gi|395739892|ref|XP_003777333.1| PREDICTED: RNA-binding protein 12B [Pongo abelii]
gi|395739895|ref|XP_003777334.1| PREDICTED: RNA-binding protein 12B [Pongo abelii]
Length = 1001
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GSP R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSPERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I++ + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|281343470|gb|EFB19054.1| hypothetical protein PANDA_014807 [Ailuropoda melanoleuca]
Length = 947
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 18/159 (11%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ +R+ MG RY+EVFR K V+ +G + +
Sbjct: 323 TGYIFVDFSSEEEVKQALKCHREYMGGRYIEVFREKN----------VTTAKGPPKNSAK 372
Query: 92 P---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DG 146
P R +E ++ +G L +R LP+++ ++D+ F F LSE +H ++S
Sbjct: 373 PWQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDLEQLFSKFGPLSE--LHYPIDSLTK 430
Query: 147 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
+P G AFV F E + A A+ D R + + PS+
Sbjct: 431 KPKGFAFVTFMFPEHAVRAYAEVDGQVFQGRMLHVLPST 469
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + + +F L +I I N+ G TG FV+F++ E+ K A+
Sbjct: 285 TVKLRGAPFNVTEKSVTEFLAP--LRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQALKC 342
Query: 169 DRMTLGSRYIELF 181
R +G RYIE+F
Sbjct: 343 HREYMGGRYIEVF 355
>gi|345793203|ref|XP_544177.3| PREDICTED: RNA-binding protein 12B [Canis lupus familiaris]
Length = 994
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
+ +ELF SS EM + +
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTI 83
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ H + + G+A + L+ +R MG R++EV + Q++ + N V +
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 82 V------RGGSPHRSIP----RAKSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
V SP R I R +SH + L L+ L S K D+ +F
Sbjct: 244 VDIPMRTEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSINKRDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ + I + D R T AFV F +D +A+ + L R + + P S ++
Sbjct: 304 FRDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNSALGLHKTVLQYRPVHIDPVSRKQ 362
Query: 188 M 188
M
Sbjct: 363 M 363
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
S+ +++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++
Sbjct: 913 SSGRVTPIKIMNLPFKANVNEILDFFHGYRILPDSVSIQYNEQGLPTGEAIVAMINYNEA 972
Query: 163 KAAMA--KDRMTLGSRYIEL 180
AA+ DR +G R ++L
Sbjct: 973 MAAIKDLNDR-PVGPRKVKL 991
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 170
+R PF K ++ FF DF L ED I++ + G GEA V+F E + KA R
Sbjct: 404 IRNFPFDVTKVEVQKFFADFSLGEDDIYLLYDDKGVGLGEALVKFKTEEQAVKAERLNRR 463
Query: 171 MTLGS 175
LG+
Sbjct: 464 RFLGT 468
>gi|26343509|dbj|BAC35411.1| unnamed protein product [Mus musculus]
Length = 521
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 13/156 (8%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F L +V AL+ NR MG RY+EVFR K+ + + +G
Sbjct: 332 TGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQG------- 384
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R L +++ ++D+ F + LSE +H ++S +P
Sbjct: 385 -RTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--LHYPIDSLTKKPK 441
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 442 GFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 477
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++++F L +I I N+ G TG FV+ ++ E+ K A+
Sbjct: 294 TVKLRGAPFNVTEKNVIEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKC 351
Query: 169 DRMTLGSRYIELF 181
+R +G RYIE+F
Sbjct: 352 NRDYMGGRYIEVF 364
>gi|440906243|gb|ELR56528.1| RNA-binding protein 12B [Bos grunniens mutus]
Length = 977
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAVSR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 903 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 962
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 963 NDR-PVGPRKVKL 974
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEM 188
R +GSR+IE+ S ++
Sbjct: 215 RSFMGSRFIEVMQGSEKQW 233
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ H + + G+A + L+ +R MG R++EV + +++ N + +
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEKQWIDFGGNLIKE 243
Query: 82 ------VRGGSPHRSIP----RAKSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
+P R I R +SH + L L+ L S K D+ +F
Sbjct: 244 GDISMRTEEHTPPRGINDRHFRKRSHSKSPRRTCSRSPLGFYVHLKNLSVSINKRDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ + I + D R T AFV F +D A+ + L R + + P S E+
Sbjct: 304 FRDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVYIDPVSREQ 362
Query: 188 M 188
M
Sbjct: 363 M 363
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 170
+R PF K ++ FF DF L+ED I + + G GEA V+F + E + KA R
Sbjct: 404 IRNFPFDVTKVEVQKFFADFSLAEDDICLLYDDKGVGLGEALVKFTSEEQAVKAERLNRR 463
Query: 171 MTLGS 175
LG+
Sbjct: 464 RFLGT 468
>gi|344295376|ref|XP_003419388.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein
19-like [Loxodonta africana]
Length = 1089
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++ +F L +I I NS G TG FV+F++ E+ K A+
Sbjct: 295 TVKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNSHGNKTGYIFVDFSSEEEVKKALKC 352
Query: 169 DRMTLGSRYIELF 181
+R +G RYIE+F
Sbjct: 353 NREYMGGRYIEVF 365
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K G P +
Sbjct: 333 TGYIFVDFSSEEEVKKALKCNREYMGGRYIEVFREKSSPTAKGPLK-----HGAKPWQG- 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++++ F + LSE +H ++S +P
Sbjct: 387 -RTLGENEEEEDLADSGRLFVRNLPYTSTEEELEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AF+ F E + A A+ D R + + PS+
Sbjct: 444 GFAFITFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 479
>gi|194673041|ref|XP_881008.3| PREDICTED: RNA-binding protein 12B isoform 4 [Bos taurus]
gi|297482529|ref|XP_002692866.1| PREDICTED: RNA-binding protein 12B [Bos taurus]
gi|296480442|tpg|DAA22557.1| TPA: RNA binding motif protein 12-like [Bos taurus]
Length = 984
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAVSR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 910 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 969
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 970 NDR-PVGPRKVKL 981
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEM 188
R +GSR+IE+ S ++
Sbjct: 215 RSFMGSRFIEVMQGSEKQW 233
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ H + + G+A + L+ +R MG R++EV + +++ N + +
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEKQWIDFGGNLIKE 243
Query: 82 ------VRGGSPHRSIP----RAKSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
+P R I R +SH + L L+ L S K D+ +F
Sbjct: 244 GDISMRTEEHTPPRGINDRHFRKRSHSKSPRRTCSRSPLGFYVHLKNLSVSINKRDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ + I + D R T AFV F +D A+ + L R + + P S E+
Sbjct: 304 FRDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVYIDPVSREQ 362
Query: 188 M 188
M
Sbjct: 363 M 363
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 170
+R PF K ++ FF DF L+ED I + + G GEA V+F + E + KA R
Sbjct: 404 IRNFPFDVTKVEVQKFFADFSLAEDDICLLYDDKGVGLGEALVKFKSEEQAVKAERLNRR 463
Query: 171 MTLGS 175
LG+
Sbjct: 464 RFLGT 468
>gi|432094975|gb|ELK26383.1| Putative RNA-binding protein 19 [Myotis davidii]
Length = 966
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 90 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 149
S + K + + S HT ++LRG PF+ + ++ +F L +I I N+ G T
Sbjct: 284 SAQKEKPAVQWEPSTPHT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKT 339
Query: 150 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
G FV+F++ E+ K A+ +R +G RYIE+F
Sbjct: 340 GYVFVDFSSEEEVKKALKCNREYMGGRYIEVF 371
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K S G R++
Sbjct: 339 TGYVFVDFSSEEEVKKALKCNREYMGGRYIEVFREKTVPVAKGPPKSSSKPWQG---RTL 395
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
+ ++ DS G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 396 GEDEEEEDLADS----GRLFVRNLPYTSTEEDLEKIFSKYGPLSE--LHYPIDSLTKKPK 449
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 450 GFAFVSFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 485
>gi|380786971|gb|AFE65361.1| RNA-binding protein 12B [Macaca mulatta]
Length = 1001
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 156 FLFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKC 213
Query: 169 DRMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 HRSFMGSRFIEVMQGSEQQWIE 235
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I++ + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|301762464|ref|XP_002916650.1| PREDICTED: RNA-binding protein 12B-like [Ailuropoda melanoleuca]
gi|281349037|gb|EFB24621.1| hypothetical protein PANDA_004747 [Ailuropoda melanoleuca]
Length = 985
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ H + + G+A + L+ +R MG R++EV + Q++ + N V +
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 82 V------RGGSPHRSIP----RAKSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
V SP R I R +SH + L L+ L S K D+ +F
Sbjct: 244 VDIPMRTEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSINKRDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ + I + D R T AFV F +D A+ + L R + + P S ++
Sbjct: 304 FRDTDLTNEQIRF-LYKDERRTRYAFVTFKTLKDYNTALGLHKTVLQYRPVHIDPVSKKQ 362
Query: 188 M 188
M
Sbjct: 363 M 363
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
S+ +++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++
Sbjct: 904 SSGRVTPIKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEA 963
Query: 163 KAAMA--KDRMTLGSRYIEL 180
AA+ DR +G R ++L
Sbjct: 964 MAAIKDLNDR-PVGPRKVKL 982
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+R PF K ++ FF DF L+ED I++ + G GEA V+F E + A +R
Sbjct: 404 IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGIGLGEALVKFKTEEQAVKAERLNRQ 463
Query: 172 TL 173
Sbjct: 464 RF 465
>gi|118401869|ref|XP_001033254.1| hypothetical protein TTHERM_00419990 [Tetrahymena thermophila]
gi|89287602|gb|EAR85591.1| hypothetical protein TTHERM_00419990 [Tetrahymena thermophila SB210]
Length = 1468
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDGRPTGEAFVEFANAEDSKAAM 166
GILR+RGLP+S +I +FFKDF + +D + N + + TGE+F+ N + + A
Sbjct: 1284 GILRIRGLPYSCKTKEIYEFFKDFEIVQDGVKRVYNYQEQKQTGESFIILKNKDQVREAK 1343
Query: 167 AK-DRMTLGSRYIELFPSSHEE 187
K + RYIE+F S E
Sbjct: 1344 QKLHGERIFQRYIEVFQSDPNE 1365
>gi|332830801|ref|XP_003311886.1| PREDICTED: RNA-binding protein 12B isoform 1 [Pan troglodytes]
gi|332830803|ref|XP_003339206.1| PREDICTED: RNA-binding protein 12B [Pan troglodytes]
gi|332830805|ref|XP_003311887.1| PREDICTED: RNA-binding protein 12B isoform 2 [Pan troglodytes]
gi|332830807|ref|XP_003311889.1| PREDICTED: RNA-binding protein 12B isoform 4 [Pan troglodytes]
gi|332830809|ref|XP_003311890.1| PREDICTED: RNA-binding protein 12B isoform 5 [Pan troglodytes]
gi|410041995|ref|XP_003951348.1| PREDICTED: RNA-binding protein 12B [Pan troglodytes]
gi|410222496|gb|JAA08467.1| RNA binding motif protein 12B [Pan troglodytes]
gi|410266932|gb|JAA21432.1| RNA binding motif protein 12B [Pan troglodytes]
gi|410301828|gb|JAA29514.1| RNA binding motif protein 12B [Pan troglodytes]
gi|410338931|gb|JAA38412.1| RNA binding motif protein 12B [Pan troglodytes]
Length = 1001
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ ++ + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I++ + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|426360209|ref|XP_004047340.1| PREDICTED: RNA-binding protein 12B isoform 1 [Gorilla gorilla
gorilla]
gi|426360211|ref|XP_004047341.1| PREDICTED: RNA-binding protein 12B isoform 2 [Gorilla gorilla
gorilla]
gi|426360213|ref|XP_004047342.1| PREDICTED: RNA-binding protein 12B isoform 3 [Gorilla gorilla
gorilla]
gi|426360215|ref|XP_004047343.1| PREDICTED: RNA-binding protein 12B isoform 4 [Gorilla gorilla
gorilla]
gi|426360217|ref|XP_004047344.1| PREDICTED: RNA-binding protein 12B isoform 5 [Gorilla gorilla
gorilla]
gi|426360219|ref|XP_004047345.1| PREDICTED: RNA-binding protein 12B isoform 6 [Gorilla gorilla
gorilla]
Length = 1001
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 987 NDR-PVGSRKVKL 998
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I++ + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAVKAERLNRRRFLGT 468
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|390465839|ref|XP_003733475.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Callithrix jacchus]
Length = 573
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+RG + DI + F L+ +HI M DGR T +A VEFA E++ AAM+KDR
Sbjct: 457 MRGCHAAETNSDIYNLFSP--LNPVRVHIEMGPDGRLTCKADVEFATWEEAGAAMSKDRA 514
Query: 172 TLGSRYIEL 180
+ RYIEL
Sbjct: 515 NMQHRYIEL 523
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 25/188 (13%)
Query: 2 ELPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYV 61
+ P + CTIHH + + EAF LG + A + M +
Sbjct: 199 DAPNLLSSCTIHHPAAXRAPATL--ERGGQSSEAFVELGSEDDIKMAXGKA---MVHWLI 253
Query: 62 EVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGK 121
EVF+S R E + R P S VH +GLP K
Sbjct: 254 EVFKSHRTEVSWVL-------------RKHPGPNSASSSNYRFVHX----HQGLPSGXHK 296
Query: 122 DDIMDFFKDFVLSEDSIHITMNSDGRPT-GEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180
+ + FF + D I T++ D R + E V A+ E ++ + K + G R +E+
Sbjct: 297 QETIQFFSELETVPDGI--TLSVDPRESLQEKLVLLASQELAEKVLXKPKERTGHRNMEV 354
Query: 181 FPSSHEEM 188
F S EE+
Sbjct: 355 FKSGQEEV 362
>gi|397500945|ref|XP_003821163.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B [Pan
paniscus]
Length = 1001
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I++ + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|355698096|gb|EHH28644.1| RNA-binding motif protein 12B [Macaca mulatta]
gi|355779824|gb|EHH64300.1| RNA-binding motif protein 12B [Macaca fascicularis]
gi|383409041|gb|AFH27734.1| RNA-binding protein 12B [Macaca mulatta]
Length = 1001
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I++ + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 156 FLFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKC 213
Query: 169 DRMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 HRSFMGSRFIEVMQGSEQQWIE 235
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|402878712|ref|XP_003903017.1| PREDICTED: RNA-binding protein 12B isoform 1 [Papio anubis]
gi|402878714|ref|XP_003903018.1| PREDICTED: RNA-binding protein 12B isoform 2 [Papio anubis]
Length = 1001
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I++ + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 156 FLFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKC 213
Query: 169 DRMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 HRSFMGSRFIEVMQGSEQQWIE 235
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|118722349|ref|NP_976324.2| RNA-binding protein 12B [Homo sapiens]
gi|215273872|sp|Q8IXT5.2|RB12B_HUMAN RecName: Full=RNA-binding protein 12B; AltName: Full=RNA-binding
motif protein 12B
Length = 1001
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I++ + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|25013120|gb|AAN71659.1| SD14463p [Drosophila melanogaster]
Length = 359
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 100 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 248 GNDIEYYT--IHMRGLPYTSFENDVFKFFE--PIRPANVRINYNKKGLHSGTADAYFDTY 303
Query: 160 EDSKAAMAKDRMTLGSRYIELF 181
EDS+ AM + R +GSRYIELF
Sbjct: 304 EDSQVAMKRHREQMGSRYIELF 325
>gi|297299765|ref|XP_002808531.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B-like
[Macaca mulatta]
Length = 1001
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I++ + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 156 FLFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKC 213
Query: 169 DRMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 HRSFMGSRFIEVMQGSEQQWIE 235
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|296226920|ref|XP_002759119.1| PREDICTED: RNA-binding protein 12B isoform 1 [Callithrix jacchus]
gi|296226922|ref|XP_002759120.1| PREDICTED: RNA-binding protein 12B isoform 2 [Callithrix jacchus]
gi|390475792|ref|XP_003735019.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
gi|390475794|ref|XP_003735020.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
gi|390475796|ref|XP_003735021.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
Length = 1001
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIDMKR 87
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVRFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ ++ + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I + + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDICLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
D+ S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDILRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVRFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|403295801|ref|XP_003938814.1| PREDICTED: RNA-binding protein 12B [Saimiri boliviensis
boliviensis]
Length = 1001
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIDMKR 87
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVRFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I++ + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
D+ S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDILRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVRFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>gi|431914230|gb|ELK15488.1| Putative RNA-binding protein 19 [Pteropus alecto]
Length = 949
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR MG RY+EVFR K K + G
Sbjct: 337 TGYIFVDFSSEEEVKKALKCNRDYMGGRYIEVFREKNVPTTKGPPKNSTKAWQG------ 390
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 391 -RTLGENEEEEDLADSGRLFVRNLPYTSSEEDLEKIFSRYGPLSE--LHYPIDSLTKKPK 447
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 448 GFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 483
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
S HT ++LRG PF+ + ++++F L +I I N+ G TG FV+F++ E+
Sbjct: 295 STPHT--VKLRGAPFNVTEKNVVEFLAP--LKPVAIRIVRNAHGNKTGYIFVDFSSEEEV 350
Query: 163 KAAMAKDRMTLGSRYIELF 181
K A+ +R +G RYIE+F
Sbjct: 351 KKALKCNRDYMGGRYIEVF 369
>gi|301779826|ref|XP_002925333.1| PREDICTED: probable RNA-binding protein 19-like [Ailuropoda
melanoleuca]
Length = 963
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 18/159 (11%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ +R+ MG RY+EVFR K V+ +G + +
Sbjct: 335 TGYIFVDFSSEEEVKQALKCHREYMGGRYIEVFREKN----------VTTAKGPPKNSAK 384
Query: 92 P---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DG 146
P R +E ++ +G L +R LP+++ ++D+ F F LSE +H ++S
Sbjct: 385 PWQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDLEQLFSKFGPLSE--LHYPIDSLTK 442
Query: 147 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
+P G AFV F E + A A+ D R + + PS+
Sbjct: 443 KPKGFAFVTFMFPEHAVRAYAEVDGQVFQGRMLHVLPST 481
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + + +F L +I I N+ G TG FV+F++ E+ K A+
Sbjct: 297 TVKLRGAPFNVTEKSVTEFLAP--LRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQALKC 354
Query: 169 DRMTLGSRYIELF 181
R +G RYIE+F
Sbjct: 355 HREYMGGRYIEVF 367
>gi|354466972|ref|XP_003495945.1| PREDICTED: probable RNA-binding protein 19 [Cricetulus griseus]
gi|344237019|gb|EGV93122.1| putative RNA-binding protein 19 [Cricetulus griseus]
Length = 954
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++ +F L +I I N+ G TG FV+ ++ E+ K A+
Sbjct: 294 TVKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKC 351
Query: 169 DRMTLGSRYIELF----PSSH 185
+R +G RYIE+F PS+H
Sbjct: 352 NREYMGGRYIEVFREKAPSAH 372
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F L +V AL+ NR+ MG RY+EVFR K + + + +G R++
Sbjct: 332 TGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREKAPSAHGPPKSSTTPWQG----RTL 387
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
H+E +D A +G L +R L +++ ++D+ F + LSE +H ++S +P
Sbjct: 388 ---GEHEEEEDLA-DSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--LHYPIDSLTKKPK 441
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AF+ F E + A A+ D R + + PS+
Sbjct: 442 GFAFITFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 477
>gi|405971235|gb|EKC36082.1| RNA-binding protein 12 [Crassostrea gigas]
Length = 487
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA-NAEDSKAAMAK 168
+ L+GLP DI F +++ IHI +S+GRP GEAFVEF+ N+E KA
Sbjct: 210 VHLQGLPPHVVAKDIAKLFDGIDIAQRGIHIVHDSNGRPLGEAFVEFSDNSECEKALNMP 269
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
DR + + L P EM + L + R
Sbjct: 270 DR-CIADHEVSLKPIPKSEMVDILKQIR 296
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
I++++GL + K D+++FFK ++++ IHI + R TG AF+E + D + A+
Sbjct: 75 IIQMKGLGINGKKVDVVEFFKGCEIAKNGEGIHIEYDIKNRCTGTAFIEMSTLSDFQTAL 134
Query: 167 AKDRMTLGSRYIELFPSS-------HEEMDEALS 193
D SR I + S HE M E ++
Sbjct: 135 TFDGKMFNSRLIRVSAGSLRDVEQLHERMREMMA 168
>gi|291407017|ref|XP_002719829.1| PREDICTED: RBD (RNA binding domain) protein family member
(rbd-1)-like [Oryctolagus cuniculus]
Length = 1025
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 25 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84
H N TG F +V AL+ NR+ MG RY+EVFR K K +
Sbjct: 302 AHGNK--TGYVFVDFSSEEEVKKALKCNREYMGGRYIEVFREKPVPATKGPQKSSTRPWQ 359
Query: 85 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMN 143
G R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++
Sbjct: 360 G-------RTLGENEEEEDLADSGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPID 410
Query: 144 S-DGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS--HEEMDEALSRG 195
S +P G AFV F E + KA D R + + PS+ E +EA + G
Sbjct: 411 SLTKKPKGFAFVTFMMPEHAVKAYAGVDGQVFQGRMLHVLPSTIKKEASEEADAPG 466
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 87 PHRSIPRAK-SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 145
P + P+ + S G++ G R P + + ++++F L +I I N+
Sbjct: 249 PTAATPQGRESGGAGQEPGAQPGHRRA---PEARAQKNVLEFLAP--LKPVAIRIVRNAH 303
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
G TG FV+F++ E+ K A+ +R +G RYIE+F
Sbjct: 304 GNKTGYVFVDFSSEEEVKKALKCNREYMGGRYIEVF 339
>gi|114051910|ref|NP_001039420.1| probable RNA-binding protein 19 [Bos taurus]
gi|88954099|gb|AAI14030.1| RNA binding motif protein 19 [Bos taurus]
Length = 920
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-IANEVSDVRGGSPHRS 90
TG F +V AL+ NR+ MG RY+EVFR + KA + N +G R+
Sbjct: 294 TGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNIPVAKAPLKNGAKPWQG----RT 349
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRP 148
+ H+E +D A +G L +R LP+++ ++D+ F + +SE +H ++S +P
Sbjct: 350 L---GEHEEEEDLA-DSGRLFVRNLPYTSSEEDLEKLFSRYGPVSE--LHYPIDSLTKKP 403
Query: 149 TGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 404 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 440
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
+ K ++M+F L +I I N+ G TG FV+F++ E+ + A+ +R +G RY
Sbjct: 265 APAKKNVMEFLAP--LKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRY 322
Query: 178 IELF 181
IE+F
Sbjct: 323 IEVF 326
>gi|355715636|gb|AES05391.1| RNA binding motif protein 19 [Mustela putorius furo]
Length = 823
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F L +V AL+ +R+ MG RY+EVFR K +A + G
Sbjct: 337 TGYIFVDLSSEEEVKQALRCHREYMGGRYIEVFREKNVPTAQAPLKSSARPWQG------ 390
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F F LSE +H ++S +P
Sbjct: 391 -RTLGENEEEEDLADSGRLFIRNLPYTSTEEDLEQLFSKFGPLSE--LHYPIDSLTKKPK 447
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 448 GFAFVTFMFPEHAVRAYAEVDGQVFQGRMLHVLPST 483
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 85 GSPHRS----IPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
GSP R+ + RA++ T ++LRG PF+ + ++ +F L +I
Sbjct: 270 GSPSRNETAGVARAEADKPATQKEPTTPYTVKLRGAPFNVTEKNVTEFLAP--LRPVAIR 327
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181
I N+ G TG FV+ ++ E+ K A+ R +G RYIE+F
Sbjct: 328 IVRNAHGNKTGYIFVDLSSEEEVKQALRCHREYMGGRYIEVF 369
>gi|296478475|tpg|DAA20590.1| TPA: RNA binding motif protein 19 [Bos taurus]
Length = 825
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-IANEVSDVRGGSPHRS 90
TG F +V AL+ NR+ MG RY+EVFR + KA + N +G R+
Sbjct: 294 TGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNIPVAKAPLKNGAKPWQG----RT 349
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRP 148
+ H+E +D A +G L +R LP+++ ++D+ F + +SE +H ++S +P
Sbjct: 350 L---GEHEEEEDLA-DSGRLFVRNLPYTSSEEDLEKLFSRYGPVSE--LHYPIDSLTKKP 403
Query: 149 TGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV F E + A A+ D R + + PS+
Sbjct: 404 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 440
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
+ K ++M+F L +I I N+ G TG FV+F++ E+ + A+ +R +G RY
Sbjct: 265 APAKKNVMEFLAP--LKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRY 322
Query: 178 IELF 181
IE+F
Sbjct: 323 IEVF 326
>gi|432874359|ref|XP_004072458.1| PREDICTED: probable RNA-binding protein 19-like [Oryzias latipes]
Length = 921
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 8/155 (5%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG + L +V+ AL++N+ +G RY+EVF+ + D + P +
Sbjct: 327 TGYVYVDLHSEEEVNKALKKNKDYIGGRYIEVFKVDH-----SGGKAKKDPKDKEPDFNF 381
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF-KDFVLSEDSIHITMNSDGRPTG 150
R DE ++ TG L +R LP++ ++DI + F K LSE I N +P G
Sbjct: 382 TRKLKEDEEEEDVSETGRLFVRNLPYTCTEEDIRELFSKHGPLSEVLFPID-NLTKKPKG 440
Query: 151 EAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
AFV + E++ A+A+ DR R + L PS+
Sbjct: 441 FAFVTYMIPENAVTALAQLDRHVFQGRMLHLLPST 475
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG+PFS + I +F L +I I N G+ TG +V+ + E+ A+ K
Sbjct: 289 TVKLRGVPFSVKEQQIKEFMTP--LRPAAIRIGKNESGQRTGYVYVDLHSEEEVNKALKK 346
Query: 169 DRMTLGSRYIELFPSSH 185
++ +G RYIE+F H
Sbjct: 347 NKDYIGGRYIEVFKVDH 363
>gi|159468195|ref|XP_001692268.1| hypothetical protein CHLREDRAFT_189395 [Chlamydomonas reinhardtii]
gi|158278454|gb|EDP04218.1| predicted protein [Chlamydomonas reinhardtii]
Length = 913
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 121 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180
+DDI FF + L I DGRP+G AF EF + E++ A++K+ +G RY+ L
Sbjct: 631 EDDIRQFFAPYDLK--GISFVYEPDGRPSGLAFAEFVSKEEALKALSKNGEYIGQRYVRL 688
Query: 181 FPSSHEEMDEALSRG 195
EM+E + G
Sbjct: 689 LHVPRAEMEEQVRLG 703
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 37/56 (66%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
+++RGLP+ + +I+ FF+ + D++ I ++ GRP+GEA++ F N +++ A
Sbjct: 818 IKIRGLPYGSSPSEILAFFQTYHFLPDTLQIGLDQLGRPSGEAWLSFTNPQEALRA 873
>gi|320166417|gb|EFW43316.1| hypothetical protein CAOG_01360 [Capsaspora owczarzaki ATCC 30864]
Length = 986
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 21/157 (13%)
Query: 14 HQLMDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY 72
Q+ +IVDV V K + G F P AL +RQ + R + Y
Sbjct: 709 EQIGNIVDVRLVRKPTGRSRGYGFVEFSSPEAAQKALALDRQPVLNRPM---------YV 759
Query: 73 KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 132
++ D G +P R V L +R L +DD++ F+ F
Sbjct: 760 SPSVDKPKDGDGPAPSRY----------AQDGVDPKTLFVRNLSSLCRRDDLVTTFEKFA 809
Query: 133 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
D + +T + DGR TG A+VEFAN ED+K A+A D
Sbjct: 810 KVVD-VRMTRHRDGRFTGRAYVEFANEEDAKLALAAD 845
Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 86 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 145
+P ++P +HD KD + + L F A ++ I F+ D + +
Sbjct: 670 APRFTLPEKHAHDVSKDPVT----VFVSNLDFKATEEMIRSQFEQIGNIVD-VRLVRKPT 724
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 189
GR G FVEF++ E ++ A+A DR + +R + + PS + D
Sbjct: 725 GRSRGYGFVEFSSPEAAQKALALDRQPVLNRPMYVSPSVDKPKD 768
>gi|326517396|dbj|BAK00065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGR 58
+DIVD L VHKN +F+GEAF V +Q +FAL RN++ R
Sbjct: 127 LDIVDCLLVHKNGRFSGEAFVVFPSSMQAEFALHRNKRESSR 168
Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 103 SAVHTGI-----LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
+ V++GI +RLRGLPF DI FF + + + ++ +GR +GEAFV F
Sbjct: 94 AGVNSGIQNFPAVRLRGLPFDCEDVDISKFFSGLDIVD---CLLVHKNGRFSGEAFVVFP 150
Query: 158 NAEDSKAAMAKDR 170
++ ++ A+ +++
Sbjct: 151 SSMQAEFALHRNK 163
>gi|324519617|gb|ADY47430.1| RNA-binding protein 12 [Ascaris suum]
Length = 218
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+ I+RL+ LP SA DI FF + + ++HI G P G AF+ FA D++ AM
Sbjct: 20 SWIIRLQRLPLSANAADIRTFFAGLRIPDGAVHIV----GGPEGNAFIGFATDVDARQAM 75
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ + + + L SS EM+ +++ R
Sbjct: 76 RYNDRRIHDQRVRLLLSSRVEMEAVIAKAR 105
>gi|68072615|ref|XP_678221.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56498618|emb|CAH97479.1| conserved hypothetical protein [Plasmodium berghei]
Length = 162
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 79 VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS--ED 136
+ ++RG S + I ++ V+ ++LRGLPF +D+I FF F LS ++
Sbjct: 37 LKNIRGFSEYGKI---------EEDKVNLPRIKLRGLPFDVSEDEIKKFFSAFKLSNQKN 87
Query: 137 SIHITMNSDGRPTGEAFVEFANAEDSKAA 165
IHI +PTG A+V F +AE+++ A
Sbjct: 88 PIHIIKGIKDKPTGHAYVYFDDAEEARNA 116
>gi|392332679|ref|XP_003752658.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 846
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++++F L +I I N+ G TG FV+ ++ E+ K A+
Sbjct: 295 TVKLRGAPFNVTEKNVLEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKC 352
Query: 169 DRMTLGSRYIELF 181
+R +G RYIE+F
Sbjct: 353 NREYMGGRYIEVF 365
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F L +V AL+ NR+ MG RY+EVFR K + S RG S
Sbjct: 333 TGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREK----------QASAARGAPKSSSA 382
Query: 92 P---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
P R E ++ +G L +R L +++ ++D+ F +
Sbjct: 383 PWQGRTLGEHEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAY 425
>gi|119627576|gb|EAX07171.1| hCG1641872, isoform CRA_b [Homo sapiens]
Length = 410
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 114 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 172
GLP A K DI + F L +HI M DGR TG+A VEFA E++ AA ++DR T
Sbjct: 198 GLPCKATKSDIYNLFSPSNLVR--VHIEMGPDGRVTGKADVEFATREEAVAATSRDRPT 254
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 146 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
GR +GEAF E + ED K A+ KDR ++G I +F S E
Sbjct: 35 GRQSGEAFAELGSEEDVKMALEKDRESMGHWRIAVFKSHRTE 76
>gi|159163875|pdb|2CQP|A Chain A, Solution Structure Of The Rna Binding Domain Of
Rna-Binding Protein 12
Length = 98
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 17 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 77 LNDR-PIGSRKVKL 89
>gi|349803597|gb|AEQ17271.1| putative rna binding motif protein 12 [Pipa carvalhoi]
Length = 77
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSS 184
T+ + L SS
Sbjct: 60 TGGTIKGSKVSLLLSS 75
>gi|157109923|ref|XP_001650880.1| heterogeneous nuclear ribonucleoprotein (hnrnp) [Aedes aegypti]
gi|108878855|gb|EAT43080.1| AAEL005441-PA, partial [Aedes aegypti]
Length = 948
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 97 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
HDE + + IL L LPF A ++++ +F+++ ++ + + DGRPTG+A V F
Sbjct: 859 HDENQPEPIRGNILCLGNLPFRAPNEELVGYFREYNITIEDVKRRYLPDGRPTGDAMVRF 918
Query: 157 ANAEDSKAAM 166
+ D++ AM
Sbjct: 919 QSGMDAQRAM 928
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
T + + L ++ + +I +FF S +HI N +GR GE VEF ++++++ +
Sbjct: 657 TTFIMITNLEYAMQESNIFEFFDQEGFSPKHVHILRNKNGRSMGECLVEFQSSQEAEETL 716
Query: 167 AKDRMTLGSR 176
+K +G R
Sbjct: 717 SKHGQVIGKR 726
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177
S G DD+ FF +S + I + + +GR TG A + F + + A+++D M L
Sbjct: 314 SDGHDDVRRFFHGQTISSNGIKMINDKNGRRTGVAMIRFLRKDGKRYALSRDGMRLRHSV 373
Query: 178 IELFPSSHEEMDEALSRGR 196
+++ + +E +EA+ R
Sbjct: 374 VKIESITDQEFEEAVDSYR 392
>gi|158428444|pdb|2EK6|A Chain A, Crystal Structure Of Human Rna-Binding Protein 12
gi|158428445|pdb|2EK6|B Chain B, Crystal Structure Of Human Rna-Binding Protein 12
gi|158428446|pdb|2EK6|C Chain C, Crystal Structure Of Human Rna-Binding Protein 12
gi|158428447|pdb|2EK6|D Chain D, Crystal Structure Of Human Rna-Binding Protein 12
Length = 95
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 17 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76
Query: 168 -KDRMTLGSRYIELF-PSS 184
DR +GSR ++L PSS
Sbjct: 77 LNDR-PIGSRKVKLSGPSS 94
>gi|149063465|gb|EDM13788.1| RNA binding motif protein 19 (predicted) [Rattus norvegicus]
Length = 451
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++++F L +I I N+ G TG FV+ ++ E+ K A+
Sbjct: 295 TVKLRGAPFNVTEKNVLEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKC 352
Query: 169 DRMTLGSRYIELF 181
+R +G RYIE+F
Sbjct: 353 NREYMGGRYIEVF 365
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F L +V AL+ NR+ MG RY+EVFR K + S RG S
Sbjct: 333 TGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREK----------QASAARGAPKSSSA 382
Query: 92 P---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 148
P R E ++ +G L +R L +++ ++D+ F + + S G P
Sbjct: 383 PWQGRTLGEHEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYG-DQGQCGCAYGSGGDP 441
Query: 149 TG 150
G
Sbjct: 442 AG 443
>gi|443715937|gb|ELU07669.1| hypothetical protein CAPTEDRAFT_49477, partial [Capitella teleta]
Length = 97
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
++L GLP+ A + DFF+ +++ IH+ N + TG +VEF + D A+AK+
Sbjct: 15 VKLDGLPYLANNVAVKDFFEGLEIAQRGIHLMHNDRHQCTGIGYVEFVTSADCDKAVAKN 74
Query: 170 RMTLGSRYI 178
+ +G R+I
Sbjct: 75 KEYMGKRFI 83
>gi|225690511|ref|NP_001070120.2| nucleolin [Danio rerio]
Length = 705
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
SDV+G S KS G+ + + +L + L FSA +D + F+ V SI
Sbjct: 437 SDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSVFEKAV----SIR 492
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAM 166
I N +GRP G AFVEF N EDSK A+
Sbjct: 493 IPQN-NGRPKGYAFVEFENVEDSKEAL 518
>gi|190339446|gb|AAI62643.1| Zgc:152810 protein [Danio rerio]
Length = 708
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
SDV+G S KS G+ + + +L + L FSA +D + F+ V SI
Sbjct: 440 SDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSVFEKAV----SIR 495
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAM 166
I N +GRP G AFVEF N EDSK A+
Sbjct: 496 IPQN-NGRPKGYAFVEFENVEDSKEAL 521
>gi|115313778|gb|AAI24136.1| Zgc:152810 [Danio rerio]
Length = 704
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
SDV+G S KS G+ + + +L + L FSA +D + F+ V SI
Sbjct: 436 SDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSVFEKAV----SIR 491
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAM 166
I N +GRP G AFVEF N EDSK A+
Sbjct: 492 IPQN-NGRPKGYAFVEFENVEDSKEAL 517
>gi|49618989|gb|AAT68079.1| nucleolin [Danio rerio]
Length = 667
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 139
SDV+G S KS G+ + + +L + L FSA +D + F+ V SI
Sbjct: 399 SDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSVFEKAV----SIR 454
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAM 166
I N +GRP G AFVEF N EDSK A+
Sbjct: 455 IPQN-NGRPKGYAFVEFENVEDSKEAL 480
>gi|85001419|ref|XP_955428.1| RNA-binding protein [Theileria annulata strain Ankara]
gi|65303574|emb|CAI75952.1| RNA-binding protein, putative [Theileria annulata]
Length = 959
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 58 RRYVEVFRSKRQEYYKA--IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
R+ VE + E +K+ I +SD++ S + +P G S + +L ++G+
Sbjct: 131 RKIVEAVTKETSEEHKSKQIQKFISDIQYVSKRKKLPSPP----GIYSPSYDALLYIKGI 186
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAKDRMTLG 174
PF A + D+ D+ K++ + S+ N +G TG+A+V N K A + T+G
Sbjct: 187 PFKATEKDVFDWLKNYDVV--SVVFIKNENGFFTGDAYVRCVNIGVRDKVAKEMENKTIG 244
Query: 175 SRYIELFPSSHEEMDEALSRG 195
RYI++F S E G
Sbjct: 245 GRYIQVFRVSENAYLEYYHSG 265
>gi|324497690|gb|ADY39495.1| putative RNA-binding protein [Hottentotta judaicus]
Length = 98
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELF 181
+LS + I + N DGRP GEA V F + D++ A+ K+R +G+RYIELF
Sbjct: 46 MLSPECIQLQRNGDGRPNGEALVTFPSRADAERAIQEKNRHNIGNRYIELF 96
>gi|410987464|ref|XP_004000021.1| PREDICTED: RNA-binding protein 12B [Felis catus]
Length = 999
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ H + + G+A + L+ +R MG R++EV + Q++ + N + +
Sbjct: 197 IFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAIKE 256
Query: 82 V------RGGSPHRSIP----RAKSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
V SP R I R +SH + L L+ L S K D+ +F
Sbjct: 257 VDIPMRIEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSINKRDLRNF 316
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ + I + D R T AFV F +D A+ + L R + + P S ++
Sbjct: 317 FRDTDLTNEQIRF-LYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVHIDPVSRKQ 375
Query: 188 M 188
M
Sbjct: 376 M 376
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 170 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 227
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 228 RSFMGSRFIEVMQGSEQQWIE 248
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 925 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 984
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 985 SDR-PVGPRKVKL 996
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP---------TGEAFVEFANA 159
++RL GLPF AG DI FF + + +HI G AF+ FA
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEVGEAFIIFCXXXXXXXAFIIFATD 63
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 196
ED++ A+++ + +ELF SS EM + + R
Sbjct: 64 EDARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMKR 100
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 170
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA R
Sbjct: 417 IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRR 476
Query: 171 MTLGS 175
LG+
Sbjct: 477 RFLGT 481
>gi|327269511|ref|XP_003219537.1| PREDICTED: RNA-binding protein 12B-like [Anolis carolinensis]
Length = 730
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 96 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 155
+H++ K S L +RG+P++A + DI+ FF L D I I + ++G G+ V+
Sbjct: 165 THNQFKTSNSDKLYLFIRGMPYTATEGDILAFFDG--LQVDGI-IMLKTNGVNNGDGLVK 221
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
FA D + +DR + +R+I ++ S+ E +++ +
Sbjct: 222 FATPTDCTRGLQRDRQYMRNRFIRIYRSNEETWIKSMGK 260
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI F + + ++IT G GEAFV F ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPADIRHLFSGLNIPDGGVYIT----GGEKGEAFVIFETDEDARQAMSY 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ + I F SS EM + R
Sbjct: 60 SERYIKNSRIGCFLSSKTEMQNVIELNR 87
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+++L+ +PF A ++I+DFF + + +S+ I N G P+GEA + N ++ A + +
Sbjct: 655 LIKLKNIPFQATPNEILDFFHGYKIIPESLSIQHNQYGLPSGEAVIALVNYNEAMAVVNE 714
Query: 169 --DRMTLGSRYIEL 180
DR LG R I L
Sbjct: 715 LNDR-PLGQRKIRL 727
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 87 PHRSIPRAKSHDEGKD-SAVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 143
P R R++S G S H G + ++ LPF K ++ FF+D + + I
Sbjct: 351 PRRITARSRSPLSGSSRSPPHNGEHYIHVKKLPFPIEKRELRAFFEDLDIPDSHITFLKI 410
Query: 144 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
D RP +A V F + D +A+ + L + I LFP S E +
Sbjct: 411 PDNRPNKDAVVMFRSMRDYYSALGYHKYPLRGQEILLFPISKEAV 455
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 171
+R P+ K ++ FF F +S IH+ + G GE V+F +D++ A + +R
Sbjct: 492 VRNFPYDVTKREVRTFFAGFNISNYDIHLLYDDKGIGLGETLVKFRTEDDARKAESLNRR 551
Query: 172 TLGSRYIELFPSSHEEMDE 190
+ L S ++M E
Sbjct: 552 RFLGTEVLLRCISEKQMKE 570
>gi|256071585|ref|XP_002572120.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645121|emb|CCD60182.1| heterogeneous nuclear ribonucleoprotein-related [Schistosoma
mansoni]
Length = 1068
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 132 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ +E I++ + D RPTG+AF+ F N + A+ + + LG RY+ELF +S EM
Sbjct: 481 MFNEQGIYLVVYPDQRPTGDAFILFCNDHIATKALIRHKDYLGDRYVELFKASPSEM 537
>gi|12856908|dbj|BAB30825.1| unnamed protein product [Mus musculus]
Length = 408
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 333 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 392
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 393 LNDR-PIGSRKVKL 405
>gi|392346882|ref|XP_003749658.1| PREDICTED: RNA-binding protein 12-like [Rattus norvegicus]
Length = 475
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 400 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 459
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 460 LNDR-PIGSRKVKL 472
>gi|320168072|gb|EFW44971.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 680
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GL ++ + DI++FF D + + + + S+ +G A+ E +A D AA+
Sbjct: 166 VIRLVGLAYAVTETDIVEFFSD-IPVKQVVVVQRRSEMHHSGVAYAELVSANDIAAALQM 224
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
L RY+E++PS HE + +AL
Sbjct: 225 HHRFLKGRYVEIYPSEHEHLVKAL 248
>gi|339236383|ref|XP_003379746.1| RNA-binding protein 12B-A [Trichinella spiralis]
gi|316977573|gb|EFV60658.1| RNA-binding protein 12B-A [Trichinella spiralis]
Length = 745
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL LP A DI D F + +I I G P GEAFV F A ++ A++
Sbjct: 4 VVRLCNLPPEARPVDISDLFCPLNIPSGNIFII----GGPMGEAFVTFGTASEADRALSY 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSR 194
D + ++++PSS +EM A+ R
Sbjct: 60 DGCIVMQDVVQIWPSSVQEMRNAVCR 85
>gi|307102453|gb|EFN50727.1| hypothetical protein CHLNCDRAFT_142539 [Chlorella variabilis]
Length = 515
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
I+ LRGLP A K+D++ F + L ++ IH+ GR EAFV F+N E+++ A
Sbjct: 9 IVVLRGLPTKASKEDVLAFLEGCGPLQQEQIHLVKPGGGRSHAEAFVAFSNMEEAQRACE 68
Query: 168 KDR----MTLGSRYIEL 180
D+ G RY+ +
Sbjct: 69 NDKNFFSPKFGERYVRV 85
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
++G+D GI+RL+GLP A D+M F + + +H+ S+ R + A V F
Sbjct: 210 EQGRD-----GIVRLKGLPTKATTGDVMAFLDGYRIKLGGVHVQPFSENRHSKIALVVFE 264
Query: 158 NAEDSKAAMAKDRMTLGSRY 177
AE++ A+ KDR G +
Sbjct: 265 TAEEATRALEKDRQPFGEAF 284
>gi|74199513|dbj|BAE41443.1| unnamed protein product [Mus musculus]
Length = 618
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ FV+K+ + T AF + + AL ++ + R V + R+E + I
Sbjct: 97 IKFVYKDERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIEC-YEK 155
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S + P K EG + + +R LPF K ++ FF DF L ED I
Sbjct: 156 KRPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 215
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
H+ + G GEA V F + E + A +R + L S E+M E
Sbjct: 216 HLLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQE 267
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 108 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ +A
Sbjct: 540 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSA 599
Query: 166 M 166
+
Sbjct: 600 V 600
>gi|167517425|ref|XP_001743053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778152|gb|EDQ91767.1| predicted protein [Monosiga brevicollis MX1]
Length = 1117
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+R+ GLPF A + +I+ FFK L + + + R +G AFV+FA + K A+ K
Sbjct: 429 TVRVLGLPFKAREPEIVGFFK--PLKPIDVRLLFDKRKRSSGRAFVDFATKPEWKKALEK 486
Query: 169 DRMTLGSRYIEL 180
+ +G RYIE+
Sbjct: 487 HKSKMGKRYIEV 498
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 20 VDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE 78
+DV L K + +G AF + AL++++ MG+RY+EV + + + I +
Sbjct: 454 IDVRLLFDKRKRSSGRAFVDFATKPEWKKALEKHKSKMGKRYIEVTAAIPE---RNIMQQ 510
Query: 79 VSDVRG-GSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VL 133
+ + P + P R + D G+ +G L +R LP++ +D++ + F+ F L
Sbjct: 511 IEKLEPEDKPKKDYPAPLRPEDEDIGE-----SGRLFVRNLPYACREDELRELFEAFGPL 565
Query: 134 SEDSIHITMNSDG-RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 186
SE +H+ ++ + +P G AF+ F E + A D R + + P+ H+
Sbjct: 566 SE--LHMPIDGETKKPKGFAFITFVLPEHASQAFQNLDNTIFQGRLLHVLPARHK 618
>gi|3970860|dbj|BAA34794.1| HRIHFB2091 [Homo sapiens]
Length = 376
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 301 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 360
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 361 LNDR-PIGSRKVKL 373
Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 34/56 (60%)
Query: 121 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176
K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R
Sbjct: 1 KMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 56
>gi|113931466|ref|NP_001039182.1| RNA binding motif protein 12B [Xenopus (Silurana) tropicalis]
gi|89271935|emb|CAJ81954.1| novel protein containing five RNA recognition motifs. (a.k.a. RRM,
RBD, or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 641
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 18/160 (11%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---------IANEVS--DVRGGSPH--RSIPRA 94
A++R+ Q MG V + S E+ K ++ EVS D + PH + +
Sbjct: 171 AVKRSGQQMGSTPVSLMLSDEAEWIKVGGVRARKRELSPEVSFDDRKKSVPHSRHELIKT 230
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
++ ++ VH L LP+ K DI F + + + I + G+ T E FV
Sbjct: 231 RARSPYEERFVH-----LINLPYDVSKRDIKVHFGNLAMKDSQITFLCDWSGKRTREGFV 285
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+F + + A A+ R SR +++ P S +M + ++R
Sbjct: 286 KFTSINQYRDACAQHRKEFCSRLVDVLPISERDMMDLIAR 325
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+++L+GL A DI FF + + + I+IT G GEAF+ F++ ED++ A++
Sbjct: 4 VIKLQGLSIEANSIDIRQFFSNLDIPKGYIYIT----GGKYGEAFIIFSSYEDARRAISY 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
L + + L SS EM AL
Sbjct: 60 SGRPLKNSSVHLSISSQAEMQRAL 83
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 28 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 87
+ K T E F Q A ++R+ R V+V ++ IA R S
Sbjct: 276 SGKRTREGFVKFTSINQYRDACAQHRKEFCSRLVDVLPISERDMMDLIARTGKKPRERSL 335
Query: 88 HRSIPRAKSHDE--GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 145
+ P+ S + GK ++ LR + K DI +FF F L E+ I + +++
Sbjct: 336 RKDSPKKCSQESNLGKGKCIY-----LRNFASNVTKPDIQNFFSGFSLKEEDIFLLYDNN 390
Query: 146 GRPTGEAFVEFANAEDSKAA 165
G GEA V F+ +++++
Sbjct: 391 GIGLGEALVVFSTEKEAEST 410
>gi|357631743|gb|EHJ79212.1| hypothetical protein KGM_15640 [Danaus plexippus]
Length = 895
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 92 PRAKSHDEG-KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 150
PR D +D +L + +PF A DDI+ FF DF L++D + N G+PTG
Sbjct: 802 PRDDEPDPALEDFGTPGCVLSMENVPFRATIDDILAFFSDFELTQDDVIRRYNERGQPTG 861
Query: 151 EAFVEFANAEDSKAAMAKDRMT 172
+A V F D+K A + ++
Sbjct: 862 DARVSFRTPFDAKRAQSSHNLS 883
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 157
D G D+ +L+L LP + DIM F DF L SI + R T A+VEF
Sbjct: 422 DTGDDNKTQFSVLKLIDLPHFVQEQDIMKAFSDFSLL--SIQLVDCRHNR-TKNAYVEFV 478
Query: 158 NAEDSKAAMA-KDRMTLGSRYIELFPSSHEE 187
+D+K A+ KD G R+ + P + EE
Sbjct: 479 KPDDAKIALERKDSYVFGRRHPAITPLTDEE 509
Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++GLP A I++F D IH+ ++++G P+G+ F EF +++++ A K
Sbjct: 629 MKGLPREATDRTIVNFLSDTGAVPARIHLMLDNNGLPSGDCFCEFRTSQEARQASTK 685
>gi|126324467|ref|XP_001378428.1| PREDICTED: probable RNA-binding protein 19 [Monodelphis domestica]
Length = 969
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++ +F L +I I N+ G TG FV+F + D + A+ +
Sbjct: 282 TVKLRGAPFNVTEQNVREFL--LPLKPMAIRIVRNAHGNKTGYVFVDFNSEGDVEKALKR 339
Query: 169 DRMTLGSRYIELF-------PSSHEEMDEALSRGR 196
++ +G RYIE+F +H++ ++ +GR
Sbjct: 340 NKDYMGGRYIEVFREKGTQGTPTHQKGNQKAWQGR 374
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 44/186 (23%)
Query: 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76
M I V H N TG F V+ AL+RN+ MG RY+EVFR K +
Sbjct: 307 MAIRIVRNAHGNK--TGYVFVDFNSEGDVEKALKRNKDYMGGRYIEVFREKGTQ------ 358
Query: 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVH---------------TGILRLRGLPFSAGK 121
G+P +H +G A +G L +R LP+++ +
Sbjct: 359 --------GTP--------THQKGNQKAWQGRELKEDEEEEDLADSGRLFVRNLPYTSTE 402
Query: 122 DDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYI 178
+D+ F + LSE +H ++ +P G AF+ F E + A A+ D R +
Sbjct: 403 EDLEKLFAKYGPLSE--VHYPIDGLTKKPKGFAFITFMFPEHAVKAYAEVDGQIFQGRML 460
Query: 179 ELFPSS 184
L PS+
Sbjct: 461 HLLPST 466
>gi|171848662|pdb|2EK1|A Chain A, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848663|pdb|2EK1|B Chain B, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848664|pdb|2EK1|C Chain C, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848665|pdb|2EK1|D Chain D, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848666|pdb|2EK1|E Chain E, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848667|pdb|2EK1|F Chain F, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848668|pdb|2EK1|G Chain G, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848669|pdb|2EK1|H Chain H, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
Length = 95
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 17 VIKVQNXPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGXPTGEAXVAFESRDEATAAVID 76
Query: 168 -KDRMTLGSRYIELF-PSS 184
DR +GSR ++L PSS
Sbjct: 77 LNDR-PIGSRKVKLSGPSS 94
>gi|327269587|ref|XP_003219575.1| PREDICTED: RNA-binding protein 12B-like [Anolis carolinensis]
Length = 730
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI F + + ++IT G GEAFV F ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPADIRHLFSGLNIPDGGVYIT----GGEKGEAFVIFETDEDARQAMSY 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ + I F SS EM + R
Sbjct: 60 SERYIKNSRIGCFLSSKTEMQNVIELNR 87
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 96 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 155
+H++ K S L +R +P++A +DDI+ FF L D + I + ++G G+ V+
Sbjct: 165 THNQFKTSNSDELYLFIRSMPYTATEDDIIAFFDG--LQVDGM-IMLKTNGVNNGDGLVK 221
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
FA D + +DR + R+I ++ S+ E +++ +
Sbjct: 222 FATPTDCTRGLQRDRQYMRHRFIRIYRSNEETWIKSMGK 260
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+++L+ +PF A ++I+DFF + + +S+ I N G P+GEA + N ++ A + +
Sbjct: 655 LIKLKNIPFRATPNEILDFFHGYKIIPESLSIQHNQYGLPSGEAVIALVNYNEAMAVVNE 714
Query: 169 --DRMTLGSRYIEL 180
DR +G R I L
Sbjct: 715 LNDR-PIGQRKIRL 727
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 87 PHRSIPRAKSHDEGKD-SAVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 143
P R R++S G S H G + ++ LPF K ++ FF+D + + I
Sbjct: 351 PRRITARSRSPLSGSSRSPPHNGEHYIHVKKLPFPIEKRELRAFFEDLDIPDSHITFLKI 410
Query: 144 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
D RP +A V F + D +A+ + L + I LFP E
Sbjct: 411 PDNRPNKDAVVMFRSMRDYYSALGYHKYPLRGQEILLFPIPKE 453
>gi|395513917|ref|XP_003761168.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein 19
[Sarcophilus harrisii]
Length = 954
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++ +F L +I I N+ G TG FV+F++ D + A+
Sbjct: 286 TVKLRGAPFNVTEQNVREFL--VPLKPVAIRIVRNAHGNKTGYVFVDFSSEGDVEKALKH 343
Query: 169 DRMTLGSRYIELF 181
++ +G RYIE+F
Sbjct: 344 NKEYMGGRYIEVF 356
Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 14/156 (8%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F V+ AL+ N++ MG RY+EVFR K ++ V G
Sbjct: 324 TGYVFVDFSSEGDVEKALKHNKEYMGGRYIEVFREKGPRVGPKPQDK--KVWQG------ 375
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R E ++ +G L +R LP+++ ++D+ F + LSE IH ++ +P
Sbjct: 376 -RELKEGEEEEDLADSGRLFVRNLPYTSTEEDLEKIFAKYGPLSE--IHYPIDGLTKKPK 432
Query: 150 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
G AFV + E + A A+ D R + + PS+
Sbjct: 433 GFAFVTYMFPEHAVKAFAEVDGQVFQGRMLHVLPST 468
>gi|211827892|gb|AAH27810.2| Rbm12 protein [Mus musculus]
Length = 368
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 293 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 352
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 353 LNDR-PIGSRKVKL 365
>gi|71026370|ref|XP_762861.1| hypothetical protein [Theileria parva strain Muguga]
gi|68349813|gb|EAN30578.1| hypothetical protein TP03_0737 [Theileria parva]
Length = 968
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 58 RRYVEVFRSKRQEYYK--AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 115
R+ VE + E ++ AI + D++ S + +P G S + +L L+G+
Sbjct: 131 RKMVEAVTKETSEDHRNLAIQKFIGDLQYVSRRKKLPTPP----GIYSPSYDALLYLKGI 186
Query: 116 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE-DSKAAMAKDRMTLG 174
PF A + D+ D+ K++ + S+ N +G TG+A+V N + K A + +G
Sbjct: 187 PFKATEKDVFDWLKNYDIV--SVIFIKNENGFFTGDAYVRCVNIQVRDKVAKEMENKRIG 244
Query: 175 SRYIELFPSSHEEMDEALSRG 195
+RYI++F S E G
Sbjct: 245 ARYIQVFRVSENAYLEYYHSG 265
>gi|320163441|gb|EFW40340.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 468
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 115 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 174
LPF A +DDI DFF+D + E I + RP G A+VEF +A D AA+ + L
Sbjct: 186 LPFDANRDDIADFFRDLNIKETRILGPREGEQRPRGIAYVEFGDANDLVAAIDRQGQELH 245
Query: 175 SRYIEL 180
R + +
Sbjct: 246 GRQLRI 251
>gi|348528569|ref|XP_003451789.1| PREDICTED: probable RNA-binding protein 19 [Oreochromis niloticus]
Length = 926
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS-DVRGGSPHRS 90
TG + L +V+ AL++N+ +G RY+EVFR A A + D + R+
Sbjct: 328 TGYVYVDLHSEEEVEKALKKNKDYIGGRYIEVFR------VDAFAGKNKRDGKEKETDRN 381
Query: 91 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 150
R DE ++ +G L +R LP++ ++DI + F D + RP G
Sbjct: 382 FSRKLKEDEEEEDVSESGRLFIRNLPYTCTEEDIKELFSKHGPLSDVLFPIDTLTKRPKG 441
Query: 151 EAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
AFV + E++ A+A+ D R + L PS+
Sbjct: 442 FAFVTYMIPENAVTALAQLDGHIFQGRMLHLLPST 476
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG+PF+ + I +F L ++ I N G TG +V+ + E+ + A+ K
Sbjct: 290 TVKLRGVPFNVKEKQIREFMTP--LKPAAVRIGKNESGNRTGYVYVDLHSEEEVEKALKK 347
Query: 169 DRMTLGSRYIELF 181
++ +G RYIE+F
Sbjct: 348 NKDYIGGRYIEVF 360
>gi|443715936|gb|ELU07668.1| hypothetical protein CAPTEDRAFT_80388, partial [Capitella teleta]
Length = 80
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+RL+ L +SA DI F + + +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRRLFHGLCIPDGGVHIV----GGENGDAFIAFSTDEDARKAMHM 59
Query: 169 DRMTLGSRYIELFPSSHEEM 188
D L I+L+ SS EM
Sbjct: 60 DGALLLQNPIKLYLSSKNEM 79
>gi|346321688|gb|EGX91287.1| pre-rRNA processing protein Mrd1, putative [Cordyceps militaris
CM01]
Length = 849
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 151
P+ + D ++ T L +R LP+SA +DD+ + F+ F D +H+ +N+ G G
Sbjct: 306 PQGQDKDSAAEAIAKTSRLFVRNLPYSATEDDLREEFEKFG-GVDEVHLPINAQGTSKGF 364
Query: 152 AFVEFANAEDSKAA-MAKDRMTLGSRYIELFPS 183
A + F A D+ AA A D T R I + P+
Sbjct: 365 AMMLFTKASDAVAAFQALDGSTFQGRIIHIIPA 397
>gi|340382973|ref|XP_003389992.1| PREDICTED: probable RNA-binding protein 19-like [Amphimedon
queenslandica]
Length = 660
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164
+HT +R+RGLP+ A + + FF LS +I + + R +G AFV+ + D K
Sbjct: 270 LHT--IRMRGLPYDASEKHVHKFFSPIQLS--NIRLLKDDRERCSGLAFVDVMSKTDLKE 325
Query: 165 AMAKDRMTLGSRYIEL 180
AM +++ +G RYIEL
Sbjct: 326 AMKRNKGRMGRRYIEL 341
>gi|349604808|gb|AEQ00256.1| RNA-binding protein 12B-like protein, partial [Equus caballus]
Length = 200
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
S+ +++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++
Sbjct: 119 SSGRVTPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEA 178
Query: 163 KAAMA--KDRMTLGSRYIEL 180
AA+ DR +G R ++L
Sbjct: 179 VAAIKDLNDR-PVGPRKVKL 197
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,077,147,588
Number of Sequences: 23463169
Number of extensions: 127248638
Number of successful extensions: 258497
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 940
Number of HSP's that attempted gapping in prelim test: 250973
Number of HSP's gapped (non-prelim): 5249
length of query: 196
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 61
effective length of database: 9,191,667,552
effective search space: 560691720672
effective search space used: 560691720672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.7 bits)