BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029263
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis
GN=HNRNPF PE=2 SV=3
Length = 415
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF
PE=1 SV=3
Length = 415
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>sp|Q794E4|HNRPF_RAT Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus
GN=Hnrnpf PE=1 SV=3
Length = 415
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>sp|Q9Z2X1|HNRPF_MOUSE Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf
PE=1 SV=3
Length = 415
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S DSA + G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>sp|Q5E9J1|HNRPF_BOVIN Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF
PE=2 SV=3
Length = 414
Score = 103 bits (258), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
CTIH + V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R
Sbjct: 34 CTIHD---GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHR 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + S P S D D G +RLRGLPF K++I+ FF
Sbjct: 91 TEMDWVLKH------------SGP--NSADTAND-----GFVRLRGLPFGCTKEEIIQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
>sp|B2RYJ8|ESRP2_RAT Epithelial splicing regulatory protein 2 OS=Rattus norvegicus
GN=Esrp2 PE=2 SV=1
Length = 716
Score = 100 bits (248), Expect = 8e-21, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 278 LCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 329
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++DF D +
Sbjct: 330 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLL 381
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 382 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 436
Score = 89.4 bits (220), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A
Sbjct: 380 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAA 439
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 440 SPLLPTLTAPLLPIPFPLAGGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 493
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ + E + AA + + + RY+E+ P S EEM L
Sbjct: 494 HGVHMVLNQQGRPSGDAFIQMMSVERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 553
Query: 195 G 195
G
Sbjct: 554 G 554
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 306
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 307 HKHHMGVRYIEVYKATGEE 325
>sp|Q8K0G8|ESRP2_MOUSE Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2
PE=2 SV=1
Length = 717
Score = 97.8 bits (242), Expect = 4e-20, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 279 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 330
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F D +
Sbjct: 331 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLL 382
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 383 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 89.0 bits (219), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A
Sbjct: 381 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAA 440
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 441 SPLLPTLTAPLLPIPFPLAGGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 494
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ + E + AA + + + RY+E+ P S EEM L
Sbjct: 495 HGVHMVLNQQGRPSGDAFIQMMSVERALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMG 554
Query: 195 G 195
G
Sbjct: 555 G 555
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>sp|Q9H6T0|ESRP2_HUMAN Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2
PE=1 SV=1
Length = 727
Score = 96.3 bits (238), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K +
Sbjct: 289 LCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVK--------I 340
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + R S ++ ILRLRGLPFSAG D++ F + +
Sbjct: 341 AGGTS-LEVARFLSRED-------QVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLL 392
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ DGRPTG+AF FA E ++AA+ + + LG RYIELF S+ E+ + L+R
Sbjct: 393 FVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 91.7 bits (226), Expect = 3e-18, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI---AN 77
+LFV H + + TG+AF + AL+R++ +G+RY+E+FRS E + + A+
Sbjct: 391 LLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAS 450
Query: 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSE 135
+P IP + G+D +RLRGLP++A +DI+ F + +
Sbjct: 451 GPLLPTLTAPLLPIPFPLAPGTGRDC------VRLRGLPYTATIEDILSFLGEAAADIRP 504
Query: 136 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSR 194
+H+ +N GRP+G+AF++ +AE + AA + + + RY+E+ P S EEM L
Sbjct: 505 HGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMG 564
Query: 195 G 195
G
Sbjct: 565 G 565
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ EE
Sbjct: 318 HKHHMGVRYIEVYKATGEE 336
>sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus
GN=Hnrnph1 PE=1 SV=3
Length = 449
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens
GN=HNRNPH1 PE=1 SV=4
Length = 449
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF K++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus
GN=Hnrnph2 PE=1 SV=1
Length = 449
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
V F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 VRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>sp|Q6AY09|HNRH2_RAT Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus
GN=Hnrnph2 PE=1 SV=1
Length = 449
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
V F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 VRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>sp|Q5RD26|HNRH2_PONAB Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii
GN=HNRNPH2 PE=2 SV=1
Length = 449
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens
GN=HNRNPH2 PE=1 SV=1
Length = 449
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>sp|Q3SZF3|HNRH2_BOVIN Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2
PE=2 SV=1
Length = 449
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+ F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + +
Sbjct: 43 IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP 102
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 140
+ S D D G +RLRGLPF K++I+ FF + + + +
Sbjct: 103 N--------------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL 143
Query: 141 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 144 PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSS 184
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>sp|Q8VHV7|HNRH1_RAT Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus
GN=Hnrnph1 PE=1 SV=2
Length = 449
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 10 CTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68
C I + I F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S
Sbjct: 34 CKIQNGAQGI---RFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN 90
Query: 69 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 128
E + + + S D D G +RLRGLPF +++I+ FF
Sbjct: 91 VEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGLPFGCSEEEIVQFF 131
Query: 129 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 132 SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEAL 192
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ +RGLP+ A ++DI +FF L+ +HI DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 169 DRMTLGSRYIELFPSS 184
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
>sp|Q5ZLR4|ESRP2_CHICK Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2
PE=2 SV=1
Length = 701
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 19/175 (10%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
L ++ + GEA Q D AL+R++ +MG RY+EV+++ +E+ K +
Sbjct: 258 LCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLK--------I 309
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 139
GG+ + + K++ V I+R+RGLPF+A ++D++ F ++ +
Sbjct: 310 AGGTSNEV-----AQFLSKENQV---IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLL 361
Query: 140 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
DGRPTG+AFV F+ E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 362 FVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + +S
Sbjct: 360 LLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNRYMS 419
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSI 138
+ I + +RLRGLP++AG DDI+DF D + +
Sbjct: 420 TPLIPTLPTPIIPVIPPPYTIATGSIRDCVRLRGLPYTAGIDDILDFMGDATADIKPHGV 479
Query: 139 HITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 195
H+ +N GRP+G+AF++ +A+ + A + + RY+E+F S EEM+ L G
Sbjct: 480 HMVLNQQGRPSGDAFIQMKSADKAFMVAQKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 537
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + + +N+ GR GEA V F N+E A+ +
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 286
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +GSRYIE++ ++ EE
Sbjct: 287 HKHHMGSRYIEVYKATGEE 305
>sp|Q8SQ27|RBM12_MACMU RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1
Length = 932
Score = 90.1 bits (222), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQSHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMMLNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 622
Query: 187 EMDE 190
+M E
Sbjct: 623 DMRE 626
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKL 929
>sp|Q9NTZ6|RBM12_HUMAN RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1
Length = 932
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKL 929
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 622
Query: 187 EMDE 190
+M E
Sbjct: 623 DMRE 626
>sp|Q5RBM8|RBM12_PONAB RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1
Length = 932
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A N + P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQK 418
Query: 102 DSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 859 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 918
Query: 168 -KDRMTLGSRYIELF 181
DR +GSR + L+
Sbjct: 919 LNDR-PIGSRKVNLY 932
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 17 MDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG ++ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------EMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186
F + + E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E
Sbjct: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 622
Query: 187 EMDE 190
+M E
Sbjct: 623 DMRE 626
>sp|Q3US41|ESRP1_MOUSE Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1
PE=2 SV=2
Length = 680
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 279 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 322
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 323 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 379
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 380 EYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNR 414
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 358 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEV-QQVLNRFS 416
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 417 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 466
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EE
Sbjct: 467 FSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 526
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 527 MNFVLMGG 534
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 285 HKHHMGTRYIEVYKATGED 303
>sp|Q6NXG1|ESRP1_HUMAN Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1
PE=1 SV=2
Length = 681
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+ K+
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KE 323
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANA 159
+ V I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA
Sbjct: 324 NQV---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E + + N S
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEV-QQVLNRFS 417
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P + +P D +RLRGLP++A +DI+DF +
Sbjct: 418 SAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIEDILDFLGE 467
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G+AF++ +A+ + AA + + RY+E+F S EE
Sbjct: 468 FATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 528 MNFVLMGG 535
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>sp|B2RYD2|ESRP1_RAT Epithelial splicing regulatory protein 1 OS=Rattus norvegicus
GN=Esrp1 PE=2 SV=2
Length = 677
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 280 DLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 326
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E +
Sbjct: 327 ---IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYA 383
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 384 QNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 23/187 (12%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA------ 74
+LFV + + + TG+AF + AL++++ +G+RY+E+FRS E +
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 418
Query: 75 ---IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 131
I + + P + +P D +RLRGLP++A +DI+DF +F
Sbjct: 419 APLIPLPTAPIIPVLPQQFVPPTNVRD----------CVRLRGLPYAATIEDILDFLGEF 468
Query: 132 V--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEM 188
+ +H+ +N GRP+G+AF++ + + + AA + T+ RY+E+F S EEM
Sbjct: 469 STDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEM 528
Query: 189 DEALSRG 195
+ L G
Sbjct: 529 NFVLMGG 535
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 286 HKHHMGTRYIEVYKATGED 304
>sp|Q8R4X3|RBM12_MOUSE RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3
Length = 992
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 11/156 (7%)
Query: 48 ALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGG---SPHRSIPRAKSHDEGK 101
AL+RNR M +RYVEV + +++ A I + S G P +++PR+KS K
Sbjct: 359 ALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQK 418
Query: 102 DS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156
S + H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF
Sbjct: 419 RSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
Query: 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 479 RNDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
+ + G+PFSA ++D+ +FF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 306 VSVHGMPFSAMENDVREFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 363
Query: 170 RMTLGSRYIELFPSSHEEMDEA 191
RM + RY+E+ P++ + A
Sbjct: 364 RMLMIQRYVEVSPATERQWVAA 385
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 167
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 917 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 976
Query: 168 -KDRMTLGSRYIEL 180
DR +GSR ++L
Sbjct: 977 LNDR-PIGSRKVKL 989
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 17 MDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY- 72
+DIV D +++ N K TGE F AL R++Q MG R+++V ++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512
Query: 73 ------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 126
K + N D R + EG+ S+ + +PFS K D++
Sbjct: 513 KIDMIRKRLQNFSYDQR---------ELVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQ 562
Query: 127 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
F + + E ++H+ ++++G+ G+A V+F +D+
Sbjct: 563 FLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDA 598
>sp|Q7ZY29|ESRP1_XENLA Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1
PE=2 SV=1
Length = 688
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 281 DLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 327
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I D RPTG+AFV FA E +
Sbjct: 328 ---IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYA 384
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 385 QNALKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + +N+ TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 360 ILFVTYPDNRPTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEV-QQVLNRYS 418
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P IP D +RLRGLP++A +DI++F +
Sbjct: 419 SAPLIPLPTPPIIPVLPQPFIPPVNVRD----------CIRLRGLPYAATIEDILEFLGE 468
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G++F++ +A+ + A K + T+ RY+E+F S EE
Sbjct: 469 FSADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAYLAAQKCHKKTMKDRYVEVFQCSAEE 528
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 529 MNFVLMGG 536
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ ++ E+
Sbjct: 287 HKHHMGNRYIEVYKATGED 305
>sp|Q6DEZ7|ESRP1_XENTR Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis
GN=esrp1 PE=2 SV=1
Length = 687
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 19/152 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V
Sbjct: 281 DLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV 327
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162
I+R+RGLPF+A ++++ FF ++ I D RPTG+AFV FA E +
Sbjct: 328 ---IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYA 384
Query: 163 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 385 QNALKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 25/188 (13%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + +N+ TG+AF + AL+++++ +G+RY+E+FRS E + + N S
Sbjct: 360 ILFVTYPDNRPTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEV-QQVLNRYS 418
Query: 81 DVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 130
P IP D +RLRGLP++A +DI++F +
Sbjct: 419 SAPLIPLPTPPIIPVLPQPFIPPVNVRD----------CIRLRGLPYAATIEDILEFLGE 468
Query: 131 FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 187
F + +H+ +N GRP+G++F++ +A+ + A K + T+ RY+E+F S EE
Sbjct: 469 FSADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAYLAAQKCHKKTMKDRYVEVFQCSAEE 528
Query: 188 MDEALSRG 195
M+ L G
Sbjct: 529 MNFVLMGG 536
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 169 DRMTLGSRYIELFPSSHEEM 188
+ +G+RYIE++ ++ E+
Sbjct: 287 HKHHMGNRYIEVYKATGEDF 306
>sp|Q7ZVR8|ESRP2_DANRE Epithelial splicing regulatory protein 2 OS=Danio rerio GN=esrp2
PE=2 SV=2
Length = 736
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D AL R++ +MG RY+EV+++ +E+ K +NEV+
Sbjct: 279 DMALDRHKHHMGSRYIEVYKATGEEFLKIAGGTSNEVAQFL------------------- 319
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANA 159
S + I+R+RGLPF+A D++ F D + DGRPTG+AFV FA
Sbjct: 320 SKENQMIIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACE 379
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 380 EYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 22 VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + + TG+AF + AL++++Q +G+RY+E+FRS E + + +S
Sbjct: 358 LLFVKYPDGRPTGDAFVLFACEEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNRYMS 417
Query: 81 DVRGGSPHRSIPRAKSHDE-GKDSAVHTG----ILRLRGLPFSAGKDDIMDFFKDFV--L 133
+ P S + TG +RLRGLP++A +DI++F + +
Sbjct: 418 TPLISTLPPPPPPMVSVPVLATPPFITTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDI 477
Query: 134 SEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192
+H+ +N GRP+G+AF++ +A+ + A + + RY+E+F S EEM L
Sbjct: 478 KPHGVHMVLNQQGRPSGDAFIQMKSADRAFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVL 537
Query: 193 SRG 195
G
Sbjct: 538 MGG 540
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 94 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 153
A S E DS ++R RGLP+ + DI FFK +++ + + +N+ GR GEA
Sbjct: 213 ACSKTEAVDSET---VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEAL 269
Query: 154 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
V F N+E A+ + + +GSRYIE++ ++ EE
Sbjct: 270 VRFINSEHRDMALDRHKHHMGSRYIEVYKATGEE 303
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 41/61 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
++R++GLP++AG DI+ FF+ + L DS+ + N G+ +GEA V F + + ++ A+A
Sbjct: 659 ALVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRAVA 718
Query: 168 K 168
+
Sbjct: 719 E 719
>sp|Q22708|SYM2_CAEEL RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2
SV=3
Length = 618
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 18/149 (12%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R+R + RY+EV YKA +E V GS S + + +
Sbjct: 236 DLALKRHRNFLLSRYIEV--------YKAGLDEFMHVATGS---------STEAMEFVSA 278
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
+ I+R+RGLP+ I FF+ L++ + IT +DGRPTG+AFV+F ED++
Sbjct: 279 NAIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFIT-RTDGRPTGDAFVQFETEEDAQQG 337
Query: 166 MAKDRMTLGSRYIELFPSSHEEMDEALSR 194
+ K R +G RYIELF S+ E+ + + R
Sbjct: 338 LLKHRQVIGQRYIELFKSTAAEVQQVVKR 366
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 22 VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LF+ + + + TG+AF L ++RQ +G+RY+E+F+S E + +
Sbjct: 310 ILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKR--C 367
Query: 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSI 138
++ SP + ++ KD +RLRGLP+ A I+ F DF ++ +
Sbjct: 368 NLINSSPAVANAVEAPEEKKKDC------VRLRGLPYEATVQHIVTFLGDFATMVKFQGV 421
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMA---KDRMTLG--SRYIELFPSSHEEMD 189
H+ N+ G P+GEAF++ N + + A A + M++G RYIE+F +S EE++
Sbjct: 422 HMVYNNQGHPSGEAFIQMINEQAASACAAGVHNNFMSVGKKKRYIEVFQASAEELN 477
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
+ R RGLP+ A + FF + I + ++S+GR GE V+F++ E A+ +
Sbjct: 182 VCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALKR 241
Query: 169 DRMTLGSRYIELFPSSHEE 187
R L SRYIE++ + +E
Sbjct: 242 HRNFLLSRYIEVYKAGLDE 260
>sp|A1L1G1|ESRP1_DANRE Epithelial splicing regulatory protein 1 OS=Danio rerio GN=esrp1
PE=2 SV=1
Length = 714
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 25/155 (16%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
D ALQR++ +MG RY+EV+++ +++ K +NEV+
Sbjct: 280 DLALQRHKHHMGGRYIEVYKATGEDFLKIAGGTSNEVASFL------------------- 320
Query: 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANA 159
S + I+R+RGLPF+A + ++ FF D I DGRPTG+AFV F+
Sbjct: 321 SRENQIIVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCE 380
Query: 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
E ++ A+ K + LG RYIELF S+ E+ + L++
Sbjct: 381 EHAQNALKKHKDMLGKRYIELFKSTAAEVQQVLNK 415
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 98/187 (52%), Gaps = 18/187 (9%)
Query: 22 VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80
+LFV + + TG+AF + AL++++ +G+RY+E+F+S E + + N+ S
Sbjct: 359 ILFVRFPDGRPTGDAFVLFSCEEHAQNALKKHKDMLGKRYIELFKSTAAEV-QQVLNKYS 417
Query: 81 DVR----GGSPHRSIPRAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFV- 132
SP S+ + +A G+ +RLRGLP+ A DI+ F ++
Sbjct: 418 SAPLIPVAPSPILSVVAPPTFV--PQTAAVPGVRDCVRLRGLPYDASIQDILVFLGEYGA 475
Query: 133 -LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM---TLGSRYIELFPSSHEEM 188
+ +H+ +N GRP+GEAF++ +AE +A +A R ++ RY+E+F S +E+
Sbjct: 476 DIKTHGVHMVLNHQGRPSGEAFIQMRSAE--RAFLAAQRCHKRSMKERYVEVFACSAQEV 533
Query: 189 DEALSRG 195
+ L G
Sbjct: 534 NIVLMGG 540
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++R RGLP+ + DI FF+ +++ + +N+ GR GEA V F + E A+ +
Sbjct: 226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQR 285
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G RYIE++ ++ E+
Sbjct: 286 HKHHMGGRYIEVYKATGED 304
>sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 PE=1 SV=2
Length = 479
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 93/207 (44%), Gaps = 43/207 (20%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 272 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 331
Query: 75 IANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAV 105
+ + SP + I K E AV
Sbjct: 332 VGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAV 391
Query: 106 HTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157
G L +RGLPF A DI++FF + ITM +S G+ TGEA V F
Sbjct: 392 DFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFD 447
Query: 158 NAEDSKAAMAKDRMTLGSRYIELFPSS 184
ED+ AAM KDR + RYIELF +S
Sbjct: 448 THEDAVAAMLKDRSHVQHRYIELFLNS 474
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 183 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 233
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS + G++RLRGLP+S + DI+DFF + + I M
Sbjct: 234 L----------MKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 281
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 282 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>sp|Q9BJZ5|FUSIL_DROME RNA-binding protein fusilli OS=Drosophila melanogaster GN=fus PE=2
SV=1
Length = 967
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 23/156 (14%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D AL+R++ ++G RY+EV+R+ +++ AIA GG A + + S
Sbjct: 334 DMALKRHKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKG 377
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKD-------FVLSEDSIHITMNSDGRPTGEAFVEFAN 158
I+R+RGLP+ A ++DFF + + + DGR TG+AFV FAN
Sbjct: 378 AQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAN 437
Query: 159 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 438 ETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 52/225 (23%)
Query: 22 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV- 79
VLFV K + + TG+AF + AL R+R+++G+RY+E+FRS E + + +
Sbjct: 417 VLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD 476
Query: 80 -SDVRGGSPHRSIP------------------RAKSHDEGKDSA---------------- 104
+ G H P + SH G A
Sbjct: 477 PKNYESGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQ 536
Query: 105 --VHTG----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 156
+ +G +RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++
Sbjct: 537 HLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM 596
Query: 157 ANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 195
+ E+S A+ R M G RYIE+F S ++M+ L+ G
Sbjct: 597 -DLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 640
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
I+R RGLP+ + DI FF+ +++ + + ++ GR GEA + F E A+ +
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 169 DRMTLGSRYIELFPSSHEE 187
+ +G+RYIE++ +S E+
Sbjct: 340 HKHHIGTRYIEVYRASGED 358
>sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 PE=1 SV=3
Length = 480
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 47/209 (22%)
Query: 17 MDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY-- 72
++IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E
Sbjct: 273 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 332
Query: 73 ------KAIAN-----------------EVS-DVRGGSPHRS-----IPR------AKSH 97
K IA+ EV+ D++ + S +P+ ++
Sbjct: 333 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 392
Query: 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 155
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 393 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 446
Query: 156 FANAEDSKAAMAKDRMTLGSRYIELFPSS 184
F ED+ AAM KDR + RYIELF +S
Sbjct: 447 FETHEDAVAAMLKDRSHVHHRYIELFLNS 475
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 23 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 184 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 234
Query: 83 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 142
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 235 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 282
Query: 143 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 188
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 283 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 329
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 167 AKDRMTLGSRYIELFPSSHEEMD 189
K RM +G RY+E++ ++E++D
Sbjct: 211 EKHRMYMGQRYVEVYEINNEDVD 233
>sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens
GN=HNRNPH3 PE=1 SV=2
Length = 346
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 168 KDRMTLGSRYIELFPSSHEEM 188
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 103 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 162 SKAAMAKDRMTLGSRYIELFPSS 184
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70
TGEAF + AL ++++ +G RY+E+FRS R E
Sbjct: 57 TGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSE 95
>sp|A8WPC5|SYM2_CAEBR RNA-binding protein sym-2 OS=Caenorhabditis briggsae GN=sym-2 PE=3
SV=2
Length = 634
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG--EAFVEFANAEDSKAAM 166
I+R+RGLP+ I FF+ L+E + IT +DGRPTG +AFV+F ED++ +
Sbjct: 286 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFIT-RTDGRPTGNCDAFVQFETEEDAQQGL 344
Query: 167 AKDRMTLGSRYIELFPSSHEEMDEALSR 194
K R +G RYIELF S+ E+ + + R
Sbjct: 345 LKHRQVIGQRYIELFKSTAAEVQQVVKR 372
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 17/149 (11%)
Query: 49 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 108
L ++RQ +G+RY+E+F+S E + + ++ +P + S ++ KD
Sbjct: 344 LLKHRQVIGQRYIELFKSTAAEVQQVVKR--CNLINSAPVVANAVEVSDEKKKDC----- 396
Query: 109 ILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+RLRGLP+ A I++F DF ++ +H+ N+ G P+GEAF++ +E + AA
Sbjct: 397 -VRLRGLPYEATVQHIVNFLGDFANMVKFQGVHMVYNNQGNPSGEAFIQMI-SEQAAAAT 454
Query: 167 A----KDRMTLG--SRYIELFPSSHEEMD 189
A + M +G RYIE+F SS EE++
Sbjct: 455 ASGVHNNFMCVGKKKRYIEVFQSSAEELN 483
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 95 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 155 EFANAEDSKAAMAKDRMTLGSRYIELF 181
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F +V AL+ NR+ MG RY+EVFR K K + G
Sbjct: 333 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG------ 386
Query: 92 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPT 149
R +E ++ +G L +R LP+++ ++D+ F + LSE +H ++S +P
Sbjct: 387 -RILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPK 443
Query: 150 GEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS 184
G AF+ F E + KA D R + + PS+
Sbjct: 444 GFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>sp|Q66JV4|R12BB_MOUSE RNA-binding protein 12B-B OS=Mus musculus GN=Rbm12b2 PE=1 SV=2
Length = 834
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A E
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTATEG 242
Query: 80 SDV-----RGGSPHRSIP----RAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDF 127
D SP R I R +SH + + + + + L+ L + K D+ +
Sbjct: 243 GDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRARSRSPLGFYVHLKNLSLNTNKRDLRNL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ D I D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ FV+K+ + T AF + + AL ++ + R V + R+E + I
Sbjct: 313 IKFVYKDERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIEC-YEK 371
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S + P K EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 432 YLLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQE 483
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 108 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ +A
Sbjct: 756 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSA 815
Query: 166 M 166
+
Sbjct: 816 V 816
>sp|Q80YR9|R12BA_MOUSE RNA-binding protein 12B-A OS=Mus musculus GN=Rbm12b1 PE=1 SV=2
Length = 836
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY--YKAIANEV 79
+L H + + G+A + L+ +R MG R++EV + Q++ + A E
Sbjct: 183 ILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTATEG 242
Query: 80 SDV-----RGGSPHRSIP----RAKSHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDF 127
D SP R I R +SH + + + + + L+ L + K D+ +
Sbjct: 243 GDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRARSRSPLGFYVHLKNLSLNTNKRDLRNL 302
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+D L+ D I D R T AFV F N +D A+ + L R + + P S +E
Sbjct: 303 FRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKE 361
Query: 188 M 188
M
Sbjct: 362 M 362
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81
+ FV+K+ + T AF + + AL ++ + R V + R+E + I
Sbjct: 313 IKFVYKDERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIEC-YEK 371
Query: 82 VRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 138
R S + P K EG + + +R LPF K ++ FF DF L ED I
Sbjct: 372 KRPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDI 431
Query: 139 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190
++ + G GEA V F + E + A +R + L S E+M E
Sbjct: 432 YLLCDDKGVGLGEALVRFKSEEQAMKAERLNRQRFLGIEVLLRLISEEQMQE 483
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 90 SIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 147
S P AK + + V I+ ++ LPF A +I+DFF + + DS+ + N G
Sbjct: 740 SFPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGL 799
Query: 148 PTGEAFVEFANAEDSKAAM 166
P GEA V N ++ AA+
Sbjct: 800 PIGEAIVAMTNYNEALAAV 818
>sp|Q5RFT7|RB12B_PONAB RNA-binding protein 12B OS=Pongo abelii GN=RBM12B PE=2 SV=1
Length = 761
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEAL 192
+ +ELF SS EM + +
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTI 83
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GSP R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSPERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYI 178
ED I++ + G GEA V+F + E + KA R LG+ +
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGTEVL 471
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV-- 79
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 80 SDVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 19/159 (11%)
Query: 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 91
TG F L +V AL+ NR MG RY+EVFR K+ + G P +
Sbjct: 332 TGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTAR-----------GPPKSTT 380
Query: 92 P---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DG 146
P R +E ++ +G L +R L +++ ++D+ F + LSE +H ++S
Sbjct: 381 PWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--LHYPIDSLTK 438
Query: 147 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184
+P G AFV F E + A A+ D R + + PS+
Sbjct: 439 KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 477
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++LRG PF+ + ++++F L +I I N+ G TG FV+ ++ E+ K A+
Sbjct: 294 TVKLRGAPFNVTEKNVIEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKC 351
Query: 169 DRMTLGSRYIELF 181
+R +G RYIE+F
Sbjct: 352 NRDYMGGRYIEVF 364
>sp|Q8IXT5|RB12B_HUMAN RNA-binding protein 12B OS=Homo sapiens GN=RBM12B PE=1 SV=2
Length = 1001
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 169 DRMTLGSRYIELFPSSHEEMDEALSRGR 196
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 18 DIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75
D+ D + F++K+ T AF + + AL ++ + R V + R++ K I
Sbjct: 308 DLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFI 367
Query: 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLS 134
A R GS R P S ++ + + +R PF K ++ FF DF+L+
Sbjct: 368 AR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLA 426
Query: 135 EDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGS 175
ED I++ + G GEA V+F + E + KA R LG+
Sbjct: 427 EDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGT 468
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L LRGLP+ +DD+ FF + D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 170 RMTLGSRYIELFPSSHEEMDE 190
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 167
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 168 KDRMTLGSRYIEL 180
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 22 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS- 80
+ H + + G+A + L+ +R MG R++EV + Q++ + N V
Sbjct: 184 IFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKE 243
Query: 81 -DVRGGSPHRSIPRA--------KSHDEGKDSAVHTGIL----RLRGLPFSAGKDDIMDF 127
DV S S PR +SH + L L+ L S + D+ +F
Sbjct: 244 GDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNF 303
Query: 128 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187
F+ L+++ I + R T AFV F +D A++ + L R + + P S ++
Sbjct: 304 FRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQ 362
Query: 188 MDEALSR 194
M + ++R
Sbjct: 363 MLKFIAR 369
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT-GEAFVEFANAE 160
D + +G L +R LPF+A D+I+ FF+ F + +HI ++ + + G AFV F++
Sbjct: 308 DQIMESGRLFIRNLPFAASGDEILAFFESFGTVK-QVHIPLDKQTKASKGLAFVSFSDPA 366
Query: 161 DSKAAM-AKDRMTLGSRYIELFPSSHEE 187
+ AA AKD T R + L P+ +++
Sbjct: 367 HALAAYRAKDGSTFQGRLLHLLPAVNKD 394
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 43 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD 102
L+V L + + G Y+E F+++ + + ++V G + KS E +
Sbjct: 395 LEVRLVLNKEGSSKGMAYIE-FKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQK 453
Query: 103 SA--VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160
+ L + L ++A ++ + + FK SI + N+ GRP G AFVEF AE
Sbjct: 454 GGGERESKTLIVNNLSYAASEETLQELFK----KATSIKMPQNNQGRPKGYAFVEFPTAE 509
Query: 161 DSKAAM 166
D+K A+
Sbjct: 510 DAKEAL 515
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAK 168
L + GLPFS K+++ D K +D + + N G+P G A+VE+ N ++ S+A M
Sbjct: 803 LFISGLPFSCTKEELEDICKAHGTVKD-LRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861
Query: 169 DRMTLGSRYIEL 180
D MT+ I++
Sbjct: 862 DGMTIRENVIKV 873
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAK 168
L + GLPFS K+++ + K +D + + N G+P G A+VE+ N ++ S+A M
Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKD-LRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861
Query: 169 DRMTLGSRYIEL 180
D MT+ I++
Sbjct: 862 DGMTIKENIIKV 873
>sp|Q5REG1|SART3_PONAB Squamous cell carcinoma antigen recognized by T-cells 3 OS=Pongo
abelii GN=SART3 PE=2 SV=1
Length = 981
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAK 168
L + GLPFS K+++ + K +D + + N G+P G A+VE+ N ++ S+A M
Sbjct: 821 LFISGLPFSCTKEELEEICKAHGTVKD-LRLVTNRAGKPKGLAYVEYENESQASQAVMKM 879
Query: 169 DRMTLGSRYIEL 180
D MT+ I++
Sbjct: 880 DGMTIKENVIKV 891
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 51 RNRQNMGRRYVEVFRSKRQEYYKAIA-NEVSDVRGGSPHRSIPRAKSHDEG--KDSAVHT 107
++ N G YVE S E KA+ + +++ G S KS + G K +
Sbjct: 357 KDGSNKGIAYVEF--SNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDS 414
Query: 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166
+L + L +SA +D + + F+ SI I N GR G AF+EF++AED+K AM
Sbjct: 415 KVLVVNNLSYSATEDSLREVFE----KATSIRIPQNQ-GRAKGFAFIEFSSAEDAKDAM 468
Score = 30.4 bits (67), Expect = 7.4, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 169
L ++ +P+S +++ + F++ I I DG G A+VEF+N +++ A+ +
Sbjct: 327 LFVKNIPYSTTVEELQEIFEN----AKDIRIPTGKDGSNKGIAYVEFSNEDEANKALEEK 382
Query: 170 R 170
+
Sbjct: 383 Q 383
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK- 168
L L L +SA K+ + + F+ I + N G+P G AF+EFA+ ED+K A+
Sbjct: 489 LVLSNLSYSATKETLEEVFEKATF----IKVPQNPHGKPKGYAFIEFASFEDAKEALNSC 544
Query: 169 DRMTLGSRYIEL 180
++M + R I L
Sbjct: 545 NKMEIEGRTIRL 556
Score = 30.8 bits (68), Expect = 5.6, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 46 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105
D A+ R R++ V ++ KA+ E++ ++ + + K D K A
Sbjct: 337 DLAVVDVRTGTNRKFGYVDFESAEDLEKAL--ELTGLKVFGNEIKLEKPKGRDSKKVRAA 394
Query: 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKA 164
T L + L F+ +D++ + F ED++ I + S DG+ G A++EF + D++
Sbjct: 395 RT--LLAKNLSFNITEDELKEVF------EDAMEIRLVSQDGKSKGIAYIEFKSEADAEK 446
Query: 165 AM-AKDRMTLGSRYIELF 181
+ K + R + L+
Sbjct: 447 NLEEKQGAEIDGRSVSLY 464
>sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17H9.04c PE=1 SV=1
Length = 604
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 147 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 191
+ TG FV FA+ ED+ A+A + LG R +E+ PSS + +D+A
Sbjct: 284 KSTGTGFVLFASHEDAADALAFNGYCLGDRMLEIIPSSTKVLDKA 328
>sp|Q99K48|NONO_MOUSE Non-POU domain-containing octamer-binding protein OS=Mus musculus
GN=Nono PE=1 SV=3
Length = 473
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 163
A H+ L +R LP + + + F F E ++ + ++ GRP+G+ VEF+ ++
Sbjct: 146 ACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV-VIVDDRGRPSGKGIVEFSGKPAAR 204
Query: 164 AAMAKDRMTLGSRYIELFPS--SHEEMDE 190
A+ DR + GS + FP + E MD+
Sbjct: 205 KAL--DRCSEGSFLLTTFPRPVTVEPMDQ 231
>sp|Q5FVM4|NONO_RAT Non-POU domain-containing octamer-binding protein OS=Rattus
norvegicus GN=Nono PE=2 SV=3
Length = 476
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 163
A H+ L +R LP + + + F F E ++ + ++ GRP+G+ VEF+ ++
Sbjct: 149 ACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV-VIVDDRGRPSGKGIVEFSGKPAAR 207
Query: 164 AAMAKDRMTLGSRYIELFPS--SHEEMDE 190
A+ DR + GS + FP + E MD+
Sbjct: 208 KAL--DRCSEGSFLLTTFPRPVTVEPMDQ 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,710,744
Number of Sequences: 539616
Number of extensions: 3134697
Number of successful extensions: 6921
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 6539
Number of HSP's gapped (non-prelim): 266
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)