Query 029263
Match_columns 196
No_of_seqs 119 out of 1395
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 8.4E-30 1.8E-34 207.4 18.0 151 3-186 118-275 (346)
2 KOG4211 Splicing factor hnRNP- 100.0 6E-30 1.3E-34 208.2 14.5 167 4-192 22-188 (510)
3 TIGR01645 half-pint poly-U bin 100.0 6.3E-29 1.4E-33 212.6 18.3 161 3-185 118-283 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-28 3.1E-33 202.0 19.2 184 3-187 100-350 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 4.4E-28 9.5E-33 205.5 19.3 161 3-184 100-264 (457)
6 KOG0117 Heterogeneous nuclear 100.0 9.3E-28 2E-32 193.3 15.6 180 4-192 95-337 (506)
7 TIGR01628 PABP-1234 polyadenyl 100.0 4E-27 8.8E-32 204.3 19.1 173 3-191 189-369 (562)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.4E-27 1.4E-31 192.2 18.9 150 3-185 14-170 (352)
9 TIGR01628 PABP-1234 polyadenyl 99.9 2.6E-26 5.7E-31 199.2 17.2 151 3-184 11-165 (562)
10 KOG0148 Apoptosis-promoting RN 99.9 1.8E-25 3.9E-30 170.1 14.2 159 5-186 75-238 (321)
11 KOG0145 RNA-binding protein EL 99.9 6.4E-25 1.4E-29 166.5 16.1 182 3-185 52-357 (360)
12 KOG1365 RNA-binding protein Fu 99.9 1E-25 2.3E-30 178.6 11.5 190 4-196 173-372 (508)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.3E-24 5E-29 185.0 17.8 178 3-184 186-373 (509)
14 KOG0144 RNA-binding protein CU 99.9 3.9E-25 8.6E-30 177.5 10.9 152 3-186 45-206 (510)
15 KOG0127 Nucleolar protein fibr 99.9 3.8E-24 8.3E-29 176.2 15.9 180 6-186 131-378 (678)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.1E-23 2.3E-28 179.6 17.9 179 3-185 287-479 (481)
17 KOG0127 Nucleolar protein fibr 99.9 3.6E-24 7.9E-29 176.3 12.5 179 4-189 17-199 (678)
18 TIGR01648 hnRNP-R-Q heterogene 99.9 9.2E-24 2E-28 180.6 14.6 146 3-186 69-222 (578)
19 TIGR01648 hnRNP-R-Q heterogene 99.9 8.5E-23 1.8E-27 174.7 16.4 151 3-188 149-309 (578)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.5E-22 3.4E-27 173.7 18.1 183 3-190 306-506 (509)
21 KOG0131 Splicing factor 3b, su 99.9 2.4E-23 5.2E-28 150.2 10.6 152 4-186 21-177 (203)
22 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 5E-22 1.1E-26 169.4 18.0 155 3-185 13-173 (481)
23 KOG0123 Polyadenylate-binding 99.9 3.1E-22 6.8E-27 164.0 15.7 147 3-191 9-158 (369)
24 TIGR01622 SF-CC1 splicing fact 99.9 2.4E-20 5.2E-25 158.3 22.2 185 3-191 197-453 (457)
25 KOG0124 Polypyrimidine tract-b 99.9 3.5E-22 7.7E-27 158.0 9.1 158 5-184 126-288 (544)
26 KOG0147 Transcriptional coacti 99.9 9E-22 2E-26 162.5 11.2 163 4-185 191-357 (549)
27 KOG4211 Splicing factor hnRNP- 99.9 1.7E-20 3.7E-25 153.3 14.3 179 4-185 115-357 (510)
28 KOG0110 RNA-binding protein (R 99.9 5E-21 1.1E-25 162.0 11.4 166 3-192 526-699 (725)
29 KOG4205 RNA-binding protein mu 99.8 2E-20 4.4E-25 148.9 8.9 160 4-190 18-180 (311)
30 KOG0123 Polyadenylate-binding 99.8 4.7E-19 1E-23 145.4 13.7 160 3-189 87-249 (369)
31 KOG0109 RNA-binding protein LA 99.8 2.9E-19 6.2E-24 137.6 9.5 136 2-185 12-149 (346)
32 KOG1365 RNA-binding protein Fu 99.8 1.3E-19 2.8E-24 144.1 6.9 175 3-194 71-251 (508)
33 PLN03134 glycine-rich RNA-bind 99.8 4.3E-18 9.2E-23 122.8 10.9 80 106-186 33-114 (144)
34 PF00076 RRM_1: RNA recognitio 99.7 4.6E-17 1E-21 102.8 8.2 69 110-179 1-70 (70)
35 KOG0146 RNA-binding protein ET 99.7 3.3E-16 7.1E-21 119.7 12.5 82 105-187 283-366 (371)
36 PF14259 RRM_6: RNA recognitio 99.7 1.5E-16 3.2E-21 100.9 8.6 69 110-179 1-70 (70)
37 PLN03120 nucleic acid binding 99.7 5E-16 1.1E-20 120.0 10.3 75 107-184 4-78 (260)
38 KOG0125 Ataxin 2-binding prote 99.7 6.2E-16 1.3E-20 121.1 9.9 84 103-188 92-176 (376)
39 TIGR01659 sex-lethal sex-letha 99.6 1.2E-15 2.6E-20 124.6 10.3 79 106-185 106-186 (346)
40 PLN03121 nucleic acid binding 99.6 2.2E-15 4.7E-20 114.8 10.1 76 106-184 4-79 (243)
41 KOG4206 Spliceosomal protein s 99.6 1.9E-14 4.2E-19 107.8 14.4 174 5-184 22-220 (221)
42 KOG0144 RNA-binding protein CU 99.6 7.6E-15 1.6E-19 118.7 12.6 78 105-183 422-501 (510)
43 KOG4307 RNA binding protein RB 99.6 1.1E-15 2.3E-20 129.7 7.9 184 4-188 323-516 (944)
44 KOG0122 Translation initiation 99.6 5.9E-15 1.3E-19 111.5 11.1 80 106-186 188-269 (270)
45 KOG0149 Predicted RNA-binding 99.6 2.4E-15 5.2E-20 113.1 6.9 77 108-184 13-89 (247)
46 KOG0110 RNA-binding protein (R 99.6 1.7E-14 3.7E-19 122.8 12.0 177 3-184 396-596 (725)
47 KOG0105 Alternative splicing f 99.6 6.6E-14 1.4E-18 101.9 12.9 155 5-174 19-176 (241)
48 KOG4212 RNA-binding protein hn 99.6 1.4E-13 3.1E-18 111.7 16.2 178 5-183 57-291 (608)
49 KOG0121 Nuclear cap-binding pr 99.6 9.7E-15 2.1E-19 100.1 7.0 77 106-183 35-113 (153)
50 KOG0114 Predicted RNA-binding 99.6 6.7E-14 1.4E-18 92.6 10.2 85 105-192 16-101 (124)
51 KOG0106 Alternative splicing f 99.6 1.9E-14 4.1E-19 108.6 8.4 160 1-186 10-171 (216)
52 smart00362 RRM_2 RNA recogniti 99.5 4.7E-14 1E-18 88.6 8.7 71 109-181 1-72 (72)
53 TIGR01645 half-pint poly-U bin 99.5 2E-14 4.4E-19 123.9 9.0 77 106-183 106-184 (612)
54 KOG0130 RNA-binding protein RB 99.5 3.4E-14 7.3E-19 98.3 7.1 78 105-183 70-149 (170)
55 KOG0147 Transcriptional coacti 99.5 3.3E-13 7.2E-18 112.2 14.3 182 3-189 289-531 (549)
56 PLN03213 repressor of silencin 99.5 8.6E-14 1.9E-18 114.6 10.5 78 105-186 8-88 (759)
57 KOG0148 Apoptosis-promoting RN 99.5 1.4E-13 3E-18 105.5 9.1 79 108-187 63-143 (321)
58 cd00590 RRM RRM (RNA recogniti 99.5 4.6E-13 1E-17 84.4 9.5 73 109-182 1-74 (74)
59 KOG0126 Predicted RNA-binding 99.5 6.4E-15 1.4E-19 106.7 0.2 77 106-183 34-112 (219)
60 smart00360 RRM RNA recognition 99.5 3.3E-13 7.1E-18 84.3 8.0 69 112-181 1-71 (71)
61 KOG0131 Splicing factor 3b, su 99.5 1.1E-13 2.3E-18 100.4 6.1 78 106-184 8-87 (203)
62 KOG0113 U1 small nuclear ribon 99.5 5E-13 1.1E-17 103.7 10.0 76 107-183 101-178 (335)
63 KOG4207 Predicted splicing fac 99.4 1.8E-13 4E-18 101.1 6.5 77 107-184 13-91 (256)
64 COG0724 RNA-binding proteins ( 99.4 7.4E-13 1.6E-17 103.8 9.5 77 107-184 115-193 (306)
65 PLN03134 glycine-rich RNA-bind 99.4 5.4E-13 1.2E-17 96.2 7.9 65 3-67 45-112 (144)
66 KOG0107 Alternative splicing f 99.4 7.2E-13 1.6E-17 95.6 8.0 74 107-185 10-84 (195)
67 KOG0111 Cyclophilin-type pepti 99.4 2.1E-13 4.6E-18 101.8 4.4 82 106-188 9-92 (298)
68 KOG0108 mRNA cleavage and poly 99.4 9.1E-13 2E-17 109.6 8.5 78 108-186 19-98 (435)
69 KOG0117 Heterogeneous nuclear 99.4 1.1E-11 2.4E-16 101.0 11.9 77 106-183 82-161 (506)
70 PF00076 RRM_1: RNA recognitio 99.4 4.2E-12 9.2E-17 79.8 7.6 61 2-62 8-70 (70)
71 KOG0145 RNA-binding protein EL 99.4 3.4E-12 7.4E-17 97.6 8.3 78 108-186 42-121 (360)
72 KOG1190 Polypyrimidine tract-b 99.4 1.9E-11 4.1E-16 98.7 12.9 171 2-184 308-489 (492)
73 KOG4212 RNA-binding protein hn 99.4 6.5E-12 1.4E-16 102.2 10.2 85 106-191 43-129 (608)
74 smart00361 RRM_1 RNA recogniti 99.3 7.1E-12 1.5E-16 79.4 6.6 58 6-63 2-69 (70)
75 KOG0105 Alternative splicing f 99.3 1.2E-11 2.7E-16 90.1 6.9 75 106-183 5-80 (241)
76 smart00361 RRM_1 RNA recogniti 99.3 2.4E-11 5.2E-16 76.9 7.5 59 121-180 2-69 (70)
77 PF14259 RRM_6: RNA recognitio 99.3 2.9E-11 6.2E-16 76.4 7.6 60 3-62 9-70 (70)
78 PF13893 RRM_5: RNA recognitio 99.3 3.2E-11 6.9E-16 72.9 6.9 55 124-183 1-56 (56)
79 PLN03120 nucleic acid binding 99.2 2.4E-11 5.2E-16 94.2 7.8 63 3-67 15-78 (260)
80 KOG0122 Translation initiation 99.2 2.5E-11 5.5E-16 92.0 6.9 66 2-67 199-267 (270)
81 PLN03121 nucleic acid binding 99.2 3.3E-11 7.2E-16 92.1 7.6 64 3-67 16-79 (243)
82 PF13893 RRM_5: RNA recognitio 99.2 8.4E-11 1.8E-15 71.0 7.6 54 9-65 1-55 (56)
83 KOG0124 Polypyrimidine tract-b 99.2 1.1E-11 2.4E-16 98.8 4.4 76 108-184 114-191 (544)
84 KOG1548 Transcription elongati 99.2 1.9E-09 4E-14 85.6 16.0 174 4-184 146-350 (382)
85 KOG0125 Ataxin 2-binding prote 99.2 2.9E-11 6.2E-16 95.2 5.6 63 6-69 110-174 (376)
86 COG0724 RNA-binding proteins ( 99.2 6.5E-10 1.4E-14 87.0 12.0 153 3-166 126-284 (306)
87 KOG0149 Predicted RNA-binding 99.2 4.3E-11 9.4E-16 90.3 5.0 62 4-65 24-87 (247)
88 KOG4208 Nucleolar RNA-binding 99.1 2.8E-10 6.1E-15 84.4 8.5 86 106-192 48-137 (214)
89 KOG4207 Predicted splicing fac 99.1 5.2E-11 1.1E-15 88.3 4.5 63 4-66 25-90 (256)
90 KOG1457 RNA binding protein (c 99.1 3.2E-09 6.9E-14 79.8 12.4 63 107-173 210-273 (284)
91 KOG0226 RNA-binding proteins [ 99.1 2.6E-10 5.7E-15 87.0 6.6 136 25-187 133-271 (290)
92 smart00360 RRM RNA recognition 99.1 5.1E-10 1.1E-14 69.6 6.9 61 3-63 7-70 (71)
93 KOG0120 Splicing factor U2AF, 99.1 1.1E-09 2.3E-14 92.2 10.8 178 3-189 300-495 (500)
94 KOG1190 Polypyrimidine tract-b 99.0 5.2E-09 1.1E-13 84.8 12.5 177 5-188 163-375 (492)
95 KOG0146 RNA-binding protein ET 99.0 1.1E-09 2.3E-14 84.4 8.2 87 106-194 18-108 (371)
96 KOG0533 RRM motif-containing p 99.0 9E-10 2E-14 85.1 7.8 78 108-186 84-162 (243)
97 KOG0121 Nuclear cap-binding pr 99.0 6.2E-10 1.3E-14 76.6 5.4 61 4-64 48-111 (153)
98 KOG0120 Splicing factor U2AF, 99.0 6.1E-10 1.3E-14 93.7 6.4 148 30-187 221-370 (500)
99 smart00362 RRM_2 RNA recogniti 99.0 2.5E-09 5.3E-14 66.7 7.4 61 3-63 10-71 (72)
100 KOG0109 RNA-binding protein LA 99.0 7.8E-10 1.7E-14 86.0 5.0 71 108-186 3-74 (346)
101 KOG0128 RNA-binding protein SA 99.0 1.2E-10 2.5E-15 101.6 0.3 131 5-185 680-814 (881)
102 KOG1456 Heterogeneous nuclear 98.9 8.1E-08 1.8E-12 77.3 15.8 174 5-186 135-363 (494)
103 KOG0113 U1 small nuclear ribon 98.9 2.1E-09 4.6E-14 83.8 6.6 61 4-64 113-176 (335)
104 KOG4206 Spliceosomal protein s 98.9 3.6E-09 7.9E-14 79.6 7.5 77 107-186 9-90 (221)
105 KOG0107 Alternative splicing f 98.9 1.9E-09 4E-14 78.1 5.6 62 3-67 21-83 (195)
106 KOG0130 RNA-binding protein RB 98.9 1.5E-09 3.2E-14 75.5 4.6 66 2-67 82-150 (170)
107 KOG0153 Predicted RNA-binding 98.9 4.2E-09 9.2E-14 83.7 7.7 74 106-185 227-302 (377)
108 PLN03213 repressor of silencin 98.9 3.1E-09 6.7E-14 88.1 7.1 64 3-68 21-87 (759)
109 KOG0415 Predicted peptidyl pro 98.9 5.2E-09 1.1E-13 83.5 6.8 83 104-187 236-320 (479)
110 KOG0132 RNA polymerase II C-te 98.9 6.5E-09 1.4E-13 90.1 7.5 76 105-186 419-495 (894)
111 KOG4205 RNA-binding protein mu 98.9 2.2E-09 4.8E-14 86.0 4.4 83 106-189 5-88 (311)
112 KOG4307 RNA binding protein RB 98.9 1.1E-08 2.5E-13 87.7 8.7 75 108-182 868-943 (944)
113 cd00590 RRM RRM (RNA recogniti 98.9 1.7E-08 3.7E-13 63.1 7.6 62 3-64 10-73 (74)
114 KOG1548 Transcription elongati 98.8 1.5E-08 3.2E-13 80.6 7.9 79 106-184 133-219 (382)
115 KOG0111 Cyclophilin-type pepti 98.8 3.6E-09 7.7E-14 79.4 3.9 66 3-68 21-89 (298)
116 KOG0116 RasGAP SH3 binding pro 98.8 1.4E-08 3E-13 84.5 7.7 76 108-184 289-365 (419)
117 KOG0126 Predicted RNA-binding 98.8 3.4E-10 7.4E-15 82.4 -1.7 60 4-63 47-109 (219)
118 KOG4209 Splicing factor RNPS1, 98.8 1.2E-08 2.7E-13 78.8 6.4 77 106-183 100-177 (231)
119 KOG4210 Nuclear localization s 98.8 7E-09 1.5E-13 82.7 4.9 156 8-186 104-264 (285)
120 KOG4208 Nucleolar RNA-binding 98.7 2.9E-08 6.2E-13 73.8 6.4 67 3-69 60-130 (214)
121 KOG0129 Predicted RNA-binding 98.7 2.8E-07 6.1E-12 76.9 12.1 169 4-184 271-452 (520)
122 KOG1457 RNA binding protein (c 98.7 1.1E-07 2.3E-12 71.7 8.6 79 106-185 33-117 (284)
123 PF04059 RRM_2: RNA recognitio 98.7 4.6E-07 9.9E-12 60.5 10.0 82 108-189 2-90 (97)
124 KOG0108 mRNA cleavage and poly 98.7 4.8E-08 1E-12 81.7 6.3 64 4-67 30-96 (435)
125 KOG0114 Predicted RNA-binding 98.6 3.6E-07 7.8E-12 60.9 8.3 67 4-71 30-97 (124)
126 KOG1456 Heterogeneous nuclear 98.6 1.6E-06 3.5E-11 69.9 13.5 163 5-175 301-474 (494)
127 KOG4454 RNA binding protein (R 98.6 1.8E-08 3.9E-13 75.6 1.9 78 105-184 7-85 (267)
128 KOG4454 RNA binding protein (R 98.6 4.9E-08 1.1E-12 73.3 3.1 120 2-168 19-144 (267)
129 KOG0415 Predicted peptidyl pro 98.5 1.9E-07 4.2E-12 74.7 4.4 60 4-63 251-313 (479)
130 KOG4661 Hsp27-ERE-TATA-binding 98.4 1.7E-06 3.6E-11 73.3 9.2 81 105-186 403-485 (940)
131 KOG1995 Conserved Zn-finger pr 98.4 4.2E-07 9.1E-12 72.9 4.5 83 104-186 63-154 (351)
132 PF08777 RRM_3: RNA binding mo 98.4 2.3E-06 5E-11 58.3 7.3 78 108-191 2-85 (105)
133 KOG4660 Protein Mei2, essentia 98.3 1.2E-06 2.5E-11 73.9 5.0 71 104-179 72-143 (549)
134 PF11608 Limkain-b1: Limkain b 98.2 6.8E-06 1.5E-10 52.8 6.9 67 109-184 4-75 (90)
135 KOG0226 RNA-binding proteins [ 98.2 8.8E-07 1.9E-11 68.0 2.9 66 5-70 203-271 (290)
136 KOG4209 Splicing factor RNPS1, 98.2 1.9E-06 4.2E-11 66.7 4.4 64 4-67 113-178 (231)
137 KOG0106 Alternative splicing f 98.2 2.1E-06 4.5E-11 65.3 4.3 69 109-185 3-72 (216)
138 KOG0112 Large RNA-binding prot 98.2 1.9E-06 4E-11 76.3 4.4 142 4-185 384-530 (975)
139 KOG0132 RNA polymerase II C-te 98.2 4.3E-06 9.2E-11 73.1 6.3 61 3-67 432-493 (894)
140 KOG0128 RNA-binding protein SA 98.2 5.9E-08 1.3E-12 85.0 -5.1 150 7-179 587-740 (881)
141 KOG0533 RRM motif-containing p 98.1 6.6E-06 1.4E-10 63.8 6.3 69 2-70 93-163 (243)
142 KOG0151 Predicted splicing reg 98.1 1.5E-05 3.3E-10 69.2 8.5 79 105-184 172-255 (877)
143 KOG0153 Predicted RNA-binding 98.1 7.9E-06 1.7E-10 65.4 6.1 61 3-67 239-301 (377)
144 PF05172 Nup35_RRM: Nup53/35/4 98.0 2.8E-05 6.1E-10 52.3 6.4 77 107-184 6-90 (100)
145 KOG4661 Hsp27-ERE-TATA-binding 97.9 1.8E-05 3.9E-10 67.3 5.5 65 5-69 418-485 (940)
146 KOG0116 RasGAP SH3 binding pro 97.8 4.5E-05 9.8E-10 63.8 5.8 65 3-67 299-365 (419)
147 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.00013 2.7E-09 49.1 6.7 60 6-67 19-90 (100)
148 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00017 3.7E-09 42.7 4.1 41 5-49 13-53 (53)
149 PF08952 DUF1866: Domain of un 97.5 0.00042 9E-09 49.5 6.5 57 123-187 52-108 (146)
150 COG5175 MOT2 Transcriptional r 97.5 0.00049 1.1E-08 55.3 7.4 85 107-193 114-210 (480)
151 KOG4849 mRNA cleavage factor I 97.5 0.00012 2.6E-09 58.9 3.9 79 107-185 80-161 (498)
152 KOG0115 RNA-binding protein p5 97.5 0.00049 1.1E-08 53.2 6.7 73 108-181 32-109 (275)
153 KOG0129 Predicted RNA-binding 97.3 0.0012 2.7E-08 55.7 7.8 61 105-167 257-324 (520)
154 KOG4285 Mitotic phosphoprotein 97.2 0.00068 1.5E-08 53.6 5.4 62 8-73 212-274 (350)
155 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00088 1.9E-08 39.7 4.5 52 108-166 2-53 (53)
156 KOG2314 Translation initiation 97.1 0.00095 2.1E-08 57.0 5.6 84 106-192 57-148 (698)
157 PF10309 DUF2414: Protein of u 97.1 0.0047 1E-07 37.6 6.7 53 108-167 6-60 (62)
158 KOG4676 Splicing factor, argin 97.1 0.0014 3.1E-08 53.6 5.7 76 108-184 8-87 (479)
159 KOG4676 Splicing factor, argin 97.0 0.00031 6.8E-09 57.3 1.7 177 3-183 18-223 (479)
160 KOG2314 Translation initiation 97.0 0.00085 1.8E-08 57.3 4.1 52 8-59 80-133 (698)
161 KOG1855 Predicted RNA-binding 97.0 0.0013 2.8E-08 54.4 4.8 63 105-168 229-305 (484)
162 KOG1996 mRNA splicing factor [ 97.0 0.0017 3.7E-08 51.2 5.3 59 5-63 299-361 (378)
163 KOG3152 TBP-binding protein, a 96.9 0.0012 2.7E-08 51.0 3.7 71 106-177 73-157 (278)
164 KOG2202 U2 snRNP splicing fact 96.8 0.00072 1.6E-08 52.3 2.3 69 122-191 83-153 (260)
165 PF08675 RNA_bind: RNA binding 96.8 0.0047 1E-07 39.8 5.1 51 109-168 11-61 (87)
166 PF08777 RRM_3: RNA binding mo 96.7 0.0097 2.1E-07 40.5 6.6 61 3-67 12-78 (105)
167 PF08952 DUF1866: Domain of un 96.6 0.0094 2E-07 42.7 6.5 61 8-75 52-112 (146)
168 COG5175 MOT2 Transcriptional r 96.6 0.0053 1.2E-07 49.5 5.6 59 10-68 138-202 (480)
169 KOG4660 Protein Mei2, essentia 96.3 0.0029 6.3E-08 53.9 2.5 56 4-62 87-143 (549)
170 PF11608 Limkain-b1: Limkain b 96.3 0.016 3.4E-07 37.5 5.2 51 9-67 23-75 (90)
171 KOG4210 Nuclear localization s 96.2 0.0026 5.7E-08 51.0 1.8 65 2-66 195-261 (285)
172 KOG2202 U2 snRNP splicing fact 95.9 0.0052 1.1E-07 47.7 2.1 61 7-67 83-146 (260)
173 KOG2416 Acinus (induces apopto 95.8 0.028 6E-07 48.6 6.4 82 105-192 442-528 (718)
174 KOG1996 mRNA splicing factor [ 95.7 0.058 1.3E-06 42.9 7.1 79 110-190 284-371 (378)
175 KOG1995 Conserved Zn-finger pr 95.6 0.011 2.4E-07 48.0 3.0 68 2-69 76-154 (351)
176 KOG4285 Mitotic phosphoprotein 95.5 0.033 7.1E-07 44.4 5.4 80 107-193 197-277 (350)
177 PF04059 RRM_2: RNA recognitio 95.5 0.13 2.8E-06 34.4 7.3 53 5-57 14-71 (97)
178 PF11767 SET_assoc: Histone ly 95.4 0.12 2.7E-06 31.9 6.5 54 118-180 11-65 (66)
179 KOG2193 IGF-II mRNA-binding pr 95.2 0.0044 9.6E-08 51.3 -0.4 142 3-187 12-158 (584)
180 KOG2193 IGF-II mRNA-binding pr 95.2 0.044 9.5E-07 45.7 5.3 75 109-189 3-79 (584)
181 PF15023 DUF4523: Protein of u 95.2 0.094 2E-06 37.4 6.1 69 108-183 87-159 (166)
182 PF07576 BRAP2: BRCA1-associat 95.1 0.41 8.9E-06 32.8 9.2 68 107-175 13-81 (110)
183 KOG2135 Proteins containing th 95.1 0.012 2.7E-07 49.3 2.0 63 2-68 383-445 (526)
184 KOG0112 Large RNA-binding prot 94.6 0.008 1.7E-07 54.1 -0.4 80 103-183 368-448 (975)
185 KOG2135 Proteins containing th 94.2 0.027 5.9E-07 47.4 1.9 71 109-185 374-445 (526)
186 PF08675 RNA_bind: RNA binding 94.2 0.15 3.3E-06 32.9 4.8 44 3-52 19-62 (87)
187 PF07292 NID: Nmi/IFP 35 domai 93.0 0.25 5.3E-06 32.4 4.5 72 35-129 1-74 (88)
188 KOG0151 Predicted splicing reg 92.5 0.2 4.3E-06 44.5 4.5 61 5-65 187-253 (877)
189 PF10309 DUF2414: Protein of u 92.5 0.62 1.3E-05 28.4 5.4 44 2-50 14-60 (62)
190 KOG2591 c-Mpl binding protein, 92.3 0.54 1.2E-05 40.7 6.7 67 108-180 176-246 (684)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 92.1 0.21 4.6E-06 37.2 3.7 67 107-173 7-80 (176)
192 KOG1855 Predicted RNA-binding 91.8 0.15 3.2E-06 42.6 2.8 49 5-53 244-307 (484)
193 KOG2068 MOT2 transcription fac 91.8 0.055 1.2E-06 43.7 0.3 78 108-186 78-163 (327)
194 PF04847 Calcipressin: Calcipr 90.8 1.1 2.5E-05 33.6 6.5 60 120-185 8-70 (184)
195 PF03468 XS: XS domain; Inter 90.7 0.43 9.4E-06 33.0 3.9 58 108-168 9-76 (116)
196 KOG0115 RNA-binding protein p5 89.9 0.32 6.9E-06 38.0 2.9 49 3-51 42-91 (275)
197 KOG4410 5-formyltetrahydrofola 89.5 1.4 3.1E-05 35.1 6.2 47 108-159 331-377 (396)
198 KOG0804 Cytoplasmic Zn-finger 89.3 2.1 4.5E-05 36.3 7.3 68 107-175 74-142 (493)
199 KOG2253 U1 snRNP complex, subu 89.0 0.39 8.4E-06 42.3 3.0 68 106-182 39-107 (668)
200 KOG2891 Surface glycoprotein [ 87.3 2.8 6.1E-05 33.4 6.6 116 34-155 77-214 (445)
201 PF11767 SET_assoc: Histone ly 86.0 4.7 0.0001 24.8 5.8 52 3-61 11-63 (66)
202 PF15023 DUF4523: Protein of u 85.9 3.7 8.1E-05 29.5 6.0 48 9-61 107-154 (166)
203 PF03880 DbpA: DbpA RNA bindin 83.6 8.1 0.00018 24.1 6.4 59 117-183 11-74 (74)
204 KOG4849 mRNA cleavage factor I 80.0 2.5 5.5E-05 34.7 3.7 65 4-69 92-162 (498)
205 PF04847 Calcipressin: Calcipr 79.9 5.5 0.00012 29.9 5.3 59 5-67 8-69 (184)
206 KOG4574 RNA-binding protein (c 76.2 1.6 3.4E-05 39.9 1.6 76 109-190 300-378 (1007)
207 PF03880 DbpA: DbpA RNA bindin 74.7 15 0.00032 22.9 5.5 57 2-65 11-73 (74)
208 KOG2068 MOT2 transcription fac 71.6 2 4.4E-05 34.9 1.1 55 11-66 99-160 (327)
209 KOG4483 Uncharacterized conser 71.2 12 0.00026 31.5 5.5 57 106-168 390-446 (528)
210 KOG2591 c-Mpl binding protein, 69.8 10 0.00023 33.2 5.0 55 2-61 185-244 (684)
211 KOG3152 TBP-binding protein, a 68.9 1.7 3.6E-05 34.2 0.1 54 7-60 89-157 (278)
212 PF07292 NID: Nmi/IFP 35 domai 68.3 6.9 0.00015 25.6 2.9 32 152-183 1-34 (88)
213 KOG2318 Uncharacterized conser 67.3 26 0.00056 31.0 6.8 76 104-180 171-300 (650)
214 KOG4008 rRNA processing protei 64.2 7.3 0.00016 30.3 2.8 30 106-135 39-68 (261)
215 PF07576 BRAP2: BRCA1-associat 63.4 45 0.00097 22.8 6.5 54 5-59 26-82 (110)
216 PF14111 DUF4283: Domain of un 63.2 4.3 9.4E-05 28.9 1.4 77 32-134 55-132 (153)
217 PF03468 XS: XS domain; Inter 63.1 7.1 0.00015 27.0 2.3 50 3-54 28-79 (116)
218 PTZ00071 40S ribosomal protein 62.7 18 0.00039 25.6 4.3 44 3-47 35-86 (132)
219 KOG2891 Surface glycoprotein [ 62.1 6.1 0.00013 31.5 2.1 39 2-40 171-216 (445)
220 PRK01178 rps24e 30S ribosomal 60.8 23 0.00049 23.8 4.4 44 3-47 30-80 (99)
221 KOG4365 Uncharacterized conser 60.4 2 4.3E-05 36.4 -0.9 75 109-185 5-81 (572)
222 TIGR03636 L23_arch archaeal ri 57.9 39 0.00084 21.5 4.9 54 110-165 16-70 (77)
223 PF15513 DUF4651: Domain of un 57.7 21 0.00044 21.7 3.4 16 7-22 9-24 (62)
224 PF01282 Ribosomal_S24e: Ribos 57.1 19 0.00041 23.3 3.4 44 3-47 12-62 (84)
225 PF02714 DUF221: Domain of unk 53.8 34 0.00074 27.7 5.3 17 35-51 1-17 (325)
226 PRK14548 50S ribosomal protein 53.6 56 0.0012 21.2 5.1 54 111-166 24-78 (84)
227 PF10281 Ish1: Putative stress 52.1 11 0.00023 20.3 1.4 16 2-17 2-17 (38)
228 cd04908 ACT_Bt0572_1 N-termina 51.8 50 0.0011 19.7 6.3 49 122-173 16-64 (66)
229 KOG3424 40S ribosomal protein 51.7 54 0.0012 22.7 5.0 47 117-164 33-84 (132)
230 KOG4213 RNA-binding protein La 47.1 34 0.00074 25.6 3.7 52 7-60 124-178 (205)
231 PF08156 NOP5NT: NOP5NT (NUC12 47.0 8.5 0.00018 23.7 0.6 37 122-168 27-63 (67)
232 PF13046 DUF3906: Protein of u 40.5 34 0.00075 20.9 2.5 32 6-37 32-63 (64)
233 PF10567 Nab6_mRNP_bdg: RNA-re 40.2 63 0.0014 26.1 4.6 82 102-184 10-106 (309)
234 smart00596 PRE_C2HC PRE_C2HC d 35.1 66 0.0014 20.0 3.1 60 122-183 2-62 (69)
235 KOG4483 Uncharacterized conser 34.9 1.2E+02 0.0025 25.9 5.5 51 7-67 406-457 (528)
236 PF00398 RrnaAD: Ribosomal RNA 33.3 55 0.0012 25.8 3.4 23 107-129 97-119 (262)
237 COG0030 KsgA Dimethyladenosine 33.2 95 0.0021 24.7 4.6 26 108-133 96-121 (259)
238 PF03439 Spt5-NGN: Early trans 32.8 1E+02 0.0022 19.7 4.0 31 17-50 32-62 (84)
239 KOG4213 RNA-binding protein La 30.8 46 0.001 24.9 2.3 69 108-181 112-182 (205)
240 PF01071 GARS_A: Phosphoribosy 29.4 99 0.0021 23.4 4.0 51 120-174 25-77 (194)
241 PF05189 RTC_insert: RNA 3'-te 29.3 1.3E+02 0.0028 19.9 4.2 50 108-157 11-65 (103)
242 PF00276 Ribosomal_L23: Riboso 28.9 1.6E+02 0.0035 19.2 4.5 50 110-159 22-83 (91)
243 PF01071 GARS_A: Phosphoribosy 28.4 1.1E+02 0.0023 23.3 4.0 44 5-50 25-68 (194)
244 cd00281 DAP_dppA Peptidase M55 27.6 1.6E+02 0.0034 23.6 4.9 42 152-193 221-263 (265)
245 PF11823 DUF3343: Protein of u 27.2 1.1E+02 0.0023 18.8 3.3 18 151-168 3-20 (73)
246 PRK05772 translation initiatio 27.1 2.3E+02 0.0051 23.8 6.1 47 5-51 4-55 (363)
247 PF09707 Cas_Cas2CT1978: CRISP 26.3 1.6E+02 0.0035 19.1 4.0 46 110-158 28-73 (86)
248 PF14893 PNMA: PNMA 26.0 51 0.0011 27.3 2.0 23 108-130 19-41 (331)
249 COG1369 POP5 RNase P/RNase MRP 25.7 2.4E+02 0.0052 19.8 6.2 62 117-182 27-99 (124)
250 COG5193 LHP1 La protein, small 25.7 36 0.00078 28.7 1.1 59 108-167 175-244 (438)
251 PF07530 PRE_C2HC: Associated 25.6 1.6E+02 0.0035 18.0 3.8 60 122-183 2-62 (68)
252 PF08206 OB_RNB: Ribonuclease 25.1 53 0.0011 19.3 1.5 12 30-41 6-17 (58)
253 cd06398 PB1_Joka2 The PB1 doma 24.1 2.2E+02 0.0047 18.7 5.9 60 115-182 25-86 (91)
254 cd08770 DAP_dppA_3 Peptidase M 23.4 1.9E+02 0.0042 23.0 4.8 41 152-192 219-260 (263)
255 KOG1295 Nonsense-mediated deca 23.4 1E+02 0.0022 25.9 3.2 52 108-162 8-65 (376)
256 cd04909 ACT_PDH-BS C-terminal 23.2 1.7E+02 0.0037 17.2 5.6 51 121-172 15-68 (69)
257 PTZ00191 60S ribosomal protein 23.0 3E+02 0.0064 19.9 5.3 53 110-164 84-137 (145)
258 PF11411 DNA_ligase_IV: DNA li 22.9 70 0.0015 17.1 1.5 15 117-131 19-33 (36)
259 PRK03717 ribonuclease P protei 22.6 2.7E+02 0.0058 19.2 5.8 57 122-182 40-99 (120)
260 PF14026 DUF4242: Protein of u 22.2 2.1E+02 0.0046 17.9 5.2 63 109-171 2-69 (77)
261 KOG2144 Tyrosyl-tRNA synthetas 21.6 1.2E+02 0.0027 24.7 3.3 71 108-191 10-81 (360)
262 cd06257 DnaJ DnaJ domain or J- 21.5 83 0.0018 17.6 1.9 19 112-130 5-23 (55)
263 PTZ00338 dimethyladenosine tra 21.4 1.9E+02 0.0042 23.3 4.6 21 110-130 104-124 (294)
264 cd08663 DAP_dppA_1 Peptidase M 21.4 2.5E+02 0.0055 22.4 5.1 41 152-192 221-262 (266)
265 KOG4574 RNA-binding protein (c 20.7 54 0.0012 30.5 1.3 63 4-71 310-376 (1007)
266 PF02617 ClpS: ATP-dependent C 20.7 69 0.0015 20.3 1.5 73 106-182 5-82 (82)
267 PHA02762 hypothetical protein; 20.4 1.2E+02 0.0027 17.7 2.3 27 130-158 8-34 (62)
268 cd08769 DAP_dppA_2 Peptidase M 20.2 2.4E+02 0.0051 22.7 4.7 42 151-192 222-264 (270)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=8.4e-30 Score=207.41 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=129.6
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..||++|+++|+.||.|++|.+ .| .+|+++|||||+|.++++|++|| ++++..+.++.|.|..+.+..
T Consensus 118 ~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~--------- 188 (346)
T TIGR01659 118 DMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGG--------- 188 (346)
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccc---------
Confidence 4799999999999999999854 45 48999999999999999999999 589999999999996544210
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCC
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFAN 158 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~ 158 (196)
......+|||.|||+.+|+++|+++|++||.+. .+.++.+. +|+++|+|||+|.+
T Consensus 189 -----------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~-~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 189 -----------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIV-QKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred -----------------------cccccceeEEeCCCCcccHHHHHHHHHhcCCEE-EEEEeecCCCCccceEEEEEECC
Confidence 011235799999999999999999999999776 78888876 89999999999999
Q ss_pred HHHHHHHHHh-CCCccCC--eEEEEEECChH
Q 029263 159 AEDSKAAMAK-DRMTLGS--RYIELFPSSHE 186 (196)
Q Consensus 159 ~~~A~~Al~~-~g~~l~g--r~i~V~~~~~~ 186 (196)
.++|++|+.. |+..+.+ ++|+|.++...
T Consensus 245 ~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 245 REEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 9999999975 9998865 79999998754
No 2
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.97 E-value=6e-30 Score=208.15 Aligned_cols=167 Identities=34% Similarity=0.609 Sum_probs=147.9
Q ss_pred chHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhccccCC
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR 83 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~~~ 83 (196)
+|++||.+||+. +.|.++++...+|+..|.|||+|.+++|+++||+++...|+.|+|+|+.+...++.+.+....
T Consensus 22 at~~ei~~Ff~~-~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g---- 96 (510)
T KOG4211|consen 22 ATEKEILDFFSN-CGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGG---- 96 (510)
T ss_pred ccHHHHHHHHhc-CceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCC----
Confidence 699999999999 889998777788999999999999999999999999999999999999998776544332210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHH
Q 029263 84 GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 163 (196)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~ 163 (196)
........+|.|++||+.||++||.+||+...++.+.|.++.+..|++.|.|||.|++++.|+
T Consensus 97 -----------------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 97 -----------------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred -----------------CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHH
Confidence 001124568999999999999999999999999887788899999999999999999999999
Q ss_pred HHHHhCCCccCCeEEEEEECChHHHHHHH
Q 029263 164 AAMAKDRMTLGSRYIELFPSSHEEMDEAL 192 (196)
Q Consensus 164 ~Al~~~g~~l~gr~i~V~~~~~~~~~~~~ 192 (196)
.||..|...|+.|.|.|..++..|+..+.
T Consensus 160 ~Al~rhre~iGhRYIEvF~Ss~~e~~~~~ 188 (510)
T KOG4211|consen 160 IALGRHRENIGHRYIEVFRSSRAEVKRAA 188 (510)
T ss_pred HHHHHHHHhhccceEEeehhHHHHHHhhc
Confidence 99999999999999999999999998874
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=6.3e-29 Score=212.62 Aligned_cols=161 Identities=19% Similarity=0.222 Sum_probs=131.0
Q ss_pred CchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..|+++|+++|+.||.|.+|. +.| .+|+++|||||+|.+.++|++|| ++|+..++|+.|.|.......
T Consensus 118 ~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p--------- 188 (612)
T TIGR01645 118 ELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMP--------- 188 (612)
T ss_pred CCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccc---------
Confidence 468999999999999999985 455 48999999999999999999999 589999999999995322100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCC
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFAN 158 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~ 158 (196)
...+..+ ..........+|||+|||+++++++|+++|+.||.+. ++++..+. +|.++|||||+|.+
T Consensus 189 ----~a~~~~~--------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~-svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 189 ----QAQPIID--------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV-KCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred ----ccccccc--------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCee-EEEEEecCCCCCcCCeEEEEECC
Confidence 0000000 0001112346899999999999999999999999876 89998886 78899999999999
Q ss_pred HHHHHHHHHh-CCCccCCeEEEEEECCh
Q 029263 159 AEDSKAAMAK-DRMTLGSRYIELFPSSH 185 (196)
Q Consensus 159 ~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 185 (196)
.++|.+|+.. |+..|+|+.|+|..+..
T Consensus 256 ~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 256 LQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 9999999975 99999999999998763
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.4e-28 Score=201.95 Aligned_cols=184 Identities=15% Similarity=0.148 Sum_probs=131.5
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCC--eeEEEEEcChHH------H
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGR--RYVEVFRSKRQE------Y 71 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~--~~i~v~~~~~~~------~ 71 (196)
..|+++|+++|+.||.|..+.+ .+ .+|.++|||||+|.+.++|+.|| .+|+..+.+ +.|.|..+.... +
T Consensus 100 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~ 179 (352)
T TIGR01661 100 TMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGL 179 (352)
T ss_pred cCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhc
Confidence 4589999999999999998743 44 47899999999999999999999 689988876 566775543221 1
Q ss_pred HHHHhhccc--cCCCC-C--------------------C-----------------------CCCCCCCCC--------C
Q 029263 72 YKAIANEVS--DVRGG-S--------------------P-----------------------HRSIPRAKS--------H 97 (196)
Q Consensus 72 ~~~~~~~~~--~~~~~-~--------------------~-----------------------~~~~~~~~~--------~ 97 (196)
......... ..+.. + . ....+.... .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
T TIGR01661 180 LSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAG 259 (352)
T ss_pred CchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccC
Confidence 000000000 00000 0 0 000000000 0
Q ss_pred CCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCC
Q 029263 98 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS 175 (196)
Q Consensus 98 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~g 175 (196)
.........+.+|||+|||+++++++|+++|++||.+. +++++.+. +|.++|||||+|.+.++|.+|+.. ||..|+|
T Consensus 260 ~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~-~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 260 AQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQ-NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence 00001122345799999999999999999999999877 79999888 999999999999999999999975 9999999
Q ss_pred eEEEEEECChHH
Q 029263 176 RYIELFPSSHEE 187 (196)
Q Consensus 176 r~i~V~~~~~~~ 187 (196)
|.|+|.+++.++
T Consensus 339 r~i~V~~~~~~~ 350 (352)
T TIGR01661 339 RVLQVSFKTNKA 350 (352)
T ss_pred eEEEEEEccCCC
Confidence 999999997654
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=4.4e-28 Score=205.54 Aligned_cols=161 Identities=20% Similarity=0.236 Sum_probs=131.6
Q ss_pred CchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~ 80 (196)
..|+++|+++|+.||.|.+|. +.| .+|+++|||||+|.+.++|.+||.+++..+.|++|.|..............
T Consensus 100 ~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~--- 176 (457)
T TIGR01622 100 KARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAA--- 176 (457)
T ss_pred CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcc---
Confidence 468999999999999999985 455 489999999999999999999999999999999999865442211000000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCH
Q 029263 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANA 159 (196)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~ 159 (196)
... ........+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.
T Consensus 177 ---------------~~~--~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~-~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 177 ---------------THQ--PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIE-DVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred ---------------ccc--CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCccceEEEEEECCH
Confidence 000 00011257899999999999999999999999776 78888877 679999999999999
Q ss_pred HHHHHHHH-hCCCccCCeEEEEEECC
Q 029263 160 EDSKAAMA-KDRMTLGSRYIELFPSS 184 (196)
Q Consensus 160 ~~A~~Al~-~~g~~l~gr~i~V~~~~ 184 (196)
++|.+|+. +||..|+|+.|.|.++.
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 99999997 49999999999999975
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=9.3e-28 Score=193.26 Aligned_cols=180 Identities=17% Similarity=0.218 Sum_probs=136.0
Q ss_pred chHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHH-Hhccccc-CCeeEEEEEcC------------
Q 029263 4 PQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNM-GRRYVEVFRSK------------ 67 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l-~~~~i~v~~~~------------ 67 (196)
..|+||..+|++.|+|.++. ++| .+|.++|||||.|.++++|+.|| ++|+..+ .|+.|.|+.+.
T Consensus 95 ~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK 174 (506)
T KOG0117|consen 95 VFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPK 174 (506)
T ss_pred ccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCc
Confidence 47899999999999999995 567 49999999999999999999999 5788876 46777775542
Q ss_pred ---hHHHHHHHhhccc-----------cCCCC--------------------------------CCCCCCCCCCCCCCCC
Q 029263 68 ---RQEYYKAIANEVS-----------DVRGG--------------------------------SPHRSIPRAKSHDEGK 101 (196)
Q Consensus 68 ---~~~~~~~~~~~~~-----------~~~~~--------------------------------~~~~~~~~~~~~~~~~ 101 (196)
+.+....+..... +.... .+-.+|..+..... .
T Consensus 175 ~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~d-e 253 (506)
T KOG0117|consen 175 TKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPD-E 253 (506)
T ss_pred cccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCC-h
Confidence 3334443333211 00000 11113332222211 2
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 029263 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 180 (196)
Q Consensus 102 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V 180 (196)
+.+...+.|||+||+.++|++.|+++|+.||.++ .|+.++| ||||+|.++++|.+||.. ||+.|.|..|.|
T Consensus 254 d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ve-RVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEv 325 (506)
T KOG0117|consen 254 DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVE-RVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEV 325 (506)
T ss_pred hhhhheeeeeeeccchhhhHHHHHHHHHhccceE-Eeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEE
Confidence 3566678999999999999999999999999877 7776655 999999999999999976 999999999999
Q ss_pred EECChHHHHHHH
Q 029263 181 FPSSHEEMDEAL 192 (196)
Q Consensus 181 ~~~~~~~~~~~~ 192 (196)
+||++.+-++.-
T Consensus 326 tLAKP~~k~k~~ 337 (506)
T KOG0117|consen 326 TLAKPVDKKKKE 337 (506)
T ss_pred EecCChhhhccc
Confidence 999998766553
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=4e-27 Score=204.27 Aligned_cols=173 Identities=16% Similarity=0.233 Sum_probs=139.0
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHH-HhcccccC----CeeEEEEEcChHHHHHH-H
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMG----RRYVEVFRSKRQEYYKA-I 75 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~----~~~i~v~~~~~~~~~~~-~ 75 (196)
.+|+++|+++|+.||.|.++. +.+.+|+++|||||+|.+.++|.+|+ .+++..+. ++.+.|........... .
T Consensus 189 ~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~ 268 (562)
T TIGR01628 189 SVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAEL 268 (562)
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHH
Confidence 479999999999999999985 45779999999999999999999999 58999998 88888866543322111 1
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEE
Q 029263 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 155 (196)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~ 155 (196)
........ ........+..|||+|||+++|+++|+++|+.||.+. +++++.+.+|.++|+|||+
T Consensus 269 ~~~~~~~~---------------~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~-~~~i~~d~~g~~~g~gfV~ 332 (562)
T TIGR01628 269 RRKFEELQ---------------QERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEIT-SAKVMLDEKGVSRGFGFVC 332 (562)
T ss_pred HhhHHhhh---------------hhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeE-EEEEEECCCCCcCCeEEEE
Confidence 11000000 0001122456799999999999999999999999876 8999999999999999999
Q ss_pred eCCHHHHHHHHHh-CCCccCCeEEEEEECChHHHHHH
Q 029263 156 FANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEA 191 (196)
Q Consensus 156 F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~~~~~~ 191 (196)
|.+.++|.+|+.. ||..++|++|.|.++.+++...+
T Consensus 333 f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~ 369 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRA 369 (562)
T ss_pred eCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHH
Confidence 9999999999975 99999999999999998765543
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=6.4e-27 Score=192.19 Aligned_cols=150 Identities=14% Similarity=0.216 Sum_probs=127.2
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..||+||+++|+.||.|.+|.+ .+ .+|+++|||||+|.+.++|.+|| .+++..++|+.|.|..+.+..
T Consensus 14 ~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~--------- 84 (352)
T TIGR01661 14 TMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS--------- 84 (352)
T ss_pred CCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccc---------
Confidence 4699999999999999999854 45 48999999999999999999999 589999999999996543110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCC
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFAN 158 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~ 158 (196)
......+|||+|||..+++++|+++|++||.+. .+.++.+. +|.++|+|||+|.+
T Consensus 85 -----------------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~~fv~f~~ 140 (352)
T TIGR01661 85 -----------------------DSIKGANLYVSGLPKTMTQHELESIFSPFGQII-TSRILSDNVTGLSKGVGFIRFDK 140 (352)
T ss_pred -----------------------cccccceEEECCccccCCHHHHHHHHhccCCEE-EEEEEecCCCCCcCcEEEEEECC
Confidence 011245799999999999999999999999766 67777665 78999999999999
Q ss_pred HHHHHHHHHh-CCCccCC--eEEEEEECCh
Q 029263 159 AEDSKAAMAK-DRMTLGS--RYIELFPSSH 185 (196)
Q Consensus 159 ~~~A~~Al~~-~g~~l~g--r~i~V~~~~~ 185 (196)
.++|+.|+.. ||..+.| ++|.|.++..
T Consensus 141 ~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~ 170 (352)
T TIGR01661 141 RDEADRAIKTLNGTTPSGCTEPITVKFANN 170 (352)
T ss_pred HHHHHHHHHHhCCCccCCCceeEEEEECCC
Confidence 9999999975 9999877 6789988753
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=2.6e-26 Score=199.18 Aligned_cols=151 Identities=19% Similarity=0.262 Sum_probs=129.2
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..||++|+++|++||.|.+|.+ .|. +++++|||||+|.+.++|++|| .+++..+.|+.|.|..+.+...
T Consensus 11 ~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~-------- 82 (562)
T TIGR01628 11 DVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPS-------- 82 (562)
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccc--------
Confidence 5799999999999999999854 454 7999999999999999999999 5788889999999966542110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCH
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~ 159 (196)
........|||+|||.++|+++|+++|+.||.+. +|++..+.+|+++|||||+|.+.
T Consensus 83 ----------------------~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~-~~~i~~~~~g~skg~afV~F~~~ 139 (562)
T TIGR01628 83 ----------------------LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNIL-SCKVATDENGKSRGYGFVHFEKE 139 (562)
T ss_pred ----------------------ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcc-eeEeeecCCCCcccEEEEEECCH
Confidence 0001234799999999999999999999999776 79999999999999999999999
Q ss_pred HHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 160 EDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 160 ~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
++|.+|+.. ||..+.|+.|.|....
T Consensus 140 e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 140 ESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred HHHHHHHHHhcccEecCceEEEeccc
Confidence 999999975 9999999999986543
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.8e-25 Score=170.12 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=127.3
Q ss_pred hHHHHHHHhcccCcceeE-EEecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 5 QVQVLCTIHHQLMDIVDV-LFVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v-~~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
+-++|++.|.+||+|.++ ++.|. +++++||+||-|.++++|+.|| +|||+-||+|.|+-..+++... .
T Consensus 75 ~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~-----e---- 145 (321)
T KOG0148|consen 75 DNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPS-----E---- 145 (321)
T ss_pred chHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCcc-----c----
Confidence 457999999999999997 45664 9999999999999999999999 7999999999998866654430 0
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHH
Q 029263 82 VRGGSPHRSIPRAKSHDEG-KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160 (196)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~ 160 (196)
.+.. +...+.- ......+.+|||+|++.-.|+++|++.|++||.+. .|++.++ +|||||.|.+.|
T Consensus 146 -~n~~-------~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~-EVRvFk~-----qGYaFVrF~tkE 211 (321)
T KOG0148|consen 146 -MNGK-------PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQ-EVRVFKD-----QGYAFVRFETKE 211 (321)
T ss_pred -cCCC-------CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcce-EEEEecc-----cceEEEEecchh
Confidence 0000 1111110 11234567899999999999999999999999665 6888754 689999999999
Q ss_pred HHHHHHHh-CCCccCCeEEEEEECChH
Q 029263 161 DSKAAMAK-DRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 161 ~A~~Al~~-~g~~l~gr~i~V~~~~~~ 186 (196)
.|..|+.. |+..++|..++.++.+..
T Consensus 212 aAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEeccccC
Confidence 99999965 999999999999998653
No 11
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=6.4e-25 Score=166.47 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=136.7
Q ss_pred CchHHHHHHHhcccCcceeE-EEecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHH--------
Q 029263 3 LPQVQVLCTIHHQLMDIVDV-LFVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEY-------- 71 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v-~~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~-------- 71 (196)
+-|+|+|+.+|++.|+|+++ ++.|+ +|.+-||+||-|-+++||++|+ .+||..|..+.|+|..+.+...
T Consensus 52 ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLY 131 (360)
T KOG0145|consen 52 NMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLY 131 (360)
T ss_pred ccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceE
Confidence 56899999999999999998 46676 9999999999999999999999 6899999999999976542210
Q ss_pred ------------HHHH----hhc-----------------------------------cccCCC----------------
Q 029263 72 ------------YKAI----ANE-----------------------------------VSDVRG---------------- 84 (196)
Q Consensus 72 ------------~~~~----~~~-----------------------------------~~~~~~---------------- 84 (196)
.+.+ ... .+....
T Consensus 132 vSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 132 VSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred EecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 0000 000 000000
Q ss_pred -----------CCCCCCCCCC-----C---------------CCC-------------CCCCCCCcccEEEEcCCCCCCC
Q 029263 85 -----------GSPHRSIPRA-----K---------------SHD-------------EGKDSAVHTGILRLRGLPFSAG 120 (196)
Q Consensus 85 -----------~~~~~~~~~~-----~---------------~~~-------------~~~~~~~~~~~l~v~nLp~~~t 120 (196)
.+|.+...++ . ... .-+.....++||||.||.++++
T Consensus 212 ~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~d 291 (360)
T KOG0145|consen 212 KTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDAD 291 (360)
T ss_pred ccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCch
Confidence 0000000000 0 000 0022334579999999999999
Q ss_pred HHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEECCh
Q 029263 121 KDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 121 ~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~~~ 185 (196)
|.-|+++|++||.+. +|++++|. +.+++|||||.+.+.++|-.|+. +||+.|++|.|+|+..+.
T Consensus 292 e~~LWQlFgpFGAv~-nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 292 ESILWQLFGPFGAVT-NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred HhHHHHHhCccccee-eEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 999999999999876 89999998 59999999999999999999995 599999999999998754
No 12
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=1e-25 Score=178.60 Aligned_cols=190 Identities=35% Similarity=0.567 Sum_probs=152.4
Q ss_pred chHHHHHHHhccc----CcceeEEEe-cCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhc
Q 029263 4 PQVQVLCTIHHQL----MDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE 78 (196)
Q Consensus 4 ~te~dl~~~F~~~----g~i~~v~~~-~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~ 78 (196)
.|+.|+.+||..- +..+.|+++ .++|+..|-|||.|..+++|+.||.+|++.||.|+|++|+++..++...+...
T Consensus 173 at~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~ 252 (508)
T KOG1365|consen 173 ATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNRE 252 (508)
T ss_pred cchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhh
Confidence 5889999999742 344567755 46999999999999999999999999999999999999999999998888776
Q ss_pred cccCCCCCCCC--CCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCcc--ceEEEEeCCCCCCceEEEE
Q 029263 79 VSDVRGGSPHR--SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFV 154 (196)
Q Consensus 79 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~--~~v~l~~~~~g~~~G~afV 154 (196)
........... -...+.... .......||.+++|||++|.++|..||..|.... ..|+++.+..|++.|.|||
T Consensus 253 ~s~pLi~~~~sp~~p~~p~~~~---p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFI 329 (508)
T KOG1365|consen 253 VSEPLIPGLTSPLLPGGPARLV---PPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFI 329 (508)
T ss_pred ccccccCCCCCCCCCCCccccC---CCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhh
Confidence 53221111100 000011111 1122367999999999999999999999998433 3589999999999999999
Q ss_pred EeCCHHHHHHHHHh-CCCccCCeEEEEEECChHHHHHHHHcCC
Q 029263 155 EFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRGR 196 (196)
Q Consensus 155 ~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~~~~~~~~~~~ 196 (196)
+|.+.++|.+|... +++...+|+|+|..++.+|+++++++++
T Consensus 330 qm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~vL~~g~ 372 (508)
T KOG1365|consen 330 QMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNEVLSGGL 372 (508)
T ss_pred hhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHHHHhcCc
Confidence 99999999999976 8777789999999999999999998874
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=2.3e-24 Score=185.02 Aligned_cols=178 Identities=14% Similarity=0.170 Sum_probs=123.4
Q ss_pred CchHHHHHHHhcccCcce--------eEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIV--------DVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 74 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~--------~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~ 74 (196)
..|+++|++||+.|+... .++.....++.+|||||+|.+.++|..||.+++..+.|+.|.|..... +...
T Consensus 186 ~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~--~~~~ 263 (509)
T TIGR01642 186 EFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHD--YIPV 263 (509)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccc--cCCc
Confidence 469999999999752211 011111234568999999999999999999999999999998854321 1000
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEE
Q 029263 75 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAF 153 (196)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~af 153 (196)
....... ....+.....................+|||+|||+.+|+++|+++|+.||.+. .+.++.+. +|.++||||
T Consensus 264 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~af 341 (509)
T TIGR01642 264 PQITPEV-SQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK-AFNLIKDIATGLSKGYAF 341 (509)
T ss_pred cccCCCC-CCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEecCCCCCcCeEEE
Confidence 0000000 00000000000000001111223457899999999999999999999999776 78888775 899999999
Q ss_pred EEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 154 VEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 154 V~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
|+|.+.++|..|+.. ||..|+|+.|.|.++.
T Consensus 342 v~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 342 CEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred EEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 999999999999964 9999999999999974
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3.9e-25 Score=177.53 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=127.0
Q ss_pred CchHHHHHHHhcccCcceeE-EEecC-CCcccceEEEEeCCHHHHHHHH-Hhccc-ccC--CeeEEEEEcChHHHHHHHh
Q 029263 3 LPQVQVLCTIHHQLMDIVDV-LFVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQ-NMG--RRYVEVFRSKRQEYYKAIA 76 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v-~~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~-~l~--~~~i~v~~~~~~~~~~~~~ 76 (196)
.|||.||+++|++||.|.+| +++|+ +|.++||+||.|.+.++|.+|+ .+++. .|- ..+|.|.++..+..
T Consensus 45 t~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~e----- 119 (510)
T KOG0144|consen 45 TASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERE----- 119 (510)
T ss_pred cccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhh-----
Confidence 69999999999999999998 56776 9999999999999999999999 45443 443 35677766653321
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEe
Q 029263 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 156 (196)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F 156 (196)
-..+...|||+-|+..+||.+++++|+.||.++ .++|++|+.|.++|+|||+|
T Consensus 120 --------------------------r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ie-d~~ilrd~~~~sRGcaFV~f 172 (510)
T KOG0144|consen 120 --------------------------RIVEERKLFVGMLSKQCTENEVREIFSRFGHIE-DCYILRDPDGLSRGCAFVKF 172 (510)
T ss_pred --------------------------ccccchhhhhhhccccccHHHHHHHHHhhCccc-hhhheecccccccceeEEEE
Confidence 012356899999999999999999999999887 89999999999999999999
Q ss_pred CCHHHHHHHHHh-CCC-ccCC--eEEEEEECChH
Q 029263 157 ANAEDSKAAMAK-DRM-TLGS--RYIELFPSSHE 186 (196)
Q Consensus 157 ~~~~~A~~Al~~-~g~-~l~g--r~i~V~~~~~~ 186 (196)
.+.+-|..|+.. ||. .+.| .+|.|.++.++
T Consensus 173 stke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 173 STKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred ehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 999999999975 764 5554 78999999754
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3.8e-24 Score=176.21 Aligned_cols=180 Identities=19% Similarity=0.306 Sum_probs=129.6
Q ss_pred HHHHHHHhcccCcceeEEEe-cCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEc-ChHHHHHHH-------
Q 029263 6 VQVLCTIHHQLMDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS-KRQEYYKAI------- 75 (196)
Q Consensus 6 e~dl~~~F~~~g~i~~v~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~-~~~~~~~~~------- 75 (196)
++||+.+|+.||.|++|.|. ...|+-.|||||.|....+|..||+ .|+..++||+|.|-.+ ....|....
T Consensus 131 ~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~ 210 (678)
T KOG0127|consen 131 KPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSL 210 (678)
T ss_pred cHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhh
Confidence 46999999999999999766 4577777999999999999999995 7999999999998443 322221100
Q ss_pred hhcc----------ccCC--------CCCC--C-CCC-----------------------CCCCCCC----C--CCCCCC
Q 029263 76 ANEV----------SDVR--------GGSP--H-RSI-----------------------PRAKSHD----E--GKDSAV 105 (196)
Q Consensus 76 ~~~~----------~~~~--------~~~~--~-~~~-----------------------~~~~~~~----~--~~~~~~ 105 (196)
.... .+.. ..+. . .+. +....+. . -.+...
T Consensus 211 Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~ 290 (678)
T KOG0127|consen 211 KKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENIT 290 (678)
T ss_pred hhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhcccccccccc
Confidence 0000 0000 0000 0 000 0000000 0 012223
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh------CC-CccCCeE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK------DR-MTLGSRY 177 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~------~g-~~l~gr~ 177 (196)
.+.+|||+||||++|+++|.++|+.||.+. ++.|+.++ ||.++|.|||.|.++.+|..||.. .| ..|.||.
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~-ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVK-YAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccce-eEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 458999999999999999999999999876 77887777 999999999999999999999953 24 7889999
Q ss_pred EEEEECChH
Q 029263 178 IELFPSSHE 186 (196)
Q Consensus 178 i~V~~~~~~ 186 (196)
|.|+++-..
T Consensus 370 Lkv~~Av~R 378 (678)
T KOG0127|consen 370 LKVTLAVTR 378 (678)
T ss_pred Eeeeeccch
Confidence 999999654
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=1.1e-23 Score=179.57 Aligned_cols=179 Identities=16% Similarity=0.196 Sum_probs=124.6
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
..|+++|+++|+.||+|.+|.++.. .+|+|||+|.+.++|..|| .+|+..+.|+.|.|..+..............+
T Consensus 287 ~vt~~~L~~lF~~yG~V~~vki~~~---~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~ 363 (481)
T TIGR01649 287 KVNCDRLFNLFCVYGNVERVKFMKN---KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDD 363 (481)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcC
Confidence 4689999999999999999865421 3589999999999999999 58999999999999776533211000000000
Q ss_pred CCC--C-CCCCCCCCCCCCC--CCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCC-ccceEEEEeCCCCCCceEEEEE
Q 029263 82 VRG--G-SPHRSIPRAKSHD--EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL-SEDSIHITMNSDGRPTGEAFVE 155 (196)
Q Consensus 82 ~~~--~-~~~~~~~~~~~~~--~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~-~~~~v~l~~~~~g~~~G~afV~ 155 (196)
... . -......+..... ........+.+|||+|||+++|+++|+++|+.||. ....|++....++ .+|+|||+
T Consensus 364 ~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVe 442 (481)
T TIGR01649 364 GLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLE 442 (481)
T ss_pred CCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEE
Confidence 000 0 0000000000000 00011234578999999999999999999999996 2336666544444 68999999
Q ss_pred eCCHHHHHHHHHh-CCCccCCeE------EEEEECCh
Q 029263 156 FANAEDSKAAMAK-DRMTLGSRY------IELFPSSH 185 (196)
Q Consensus 156 F~~~~~A~~Al~~-~g~~l~gr~------i~V~~~~~ 185 (196)
|.+.++|..||.. |++.|.|+. |+|+.+++
T Consensus 443 F~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 443 WESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred cCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 9999999999975 999999985 99998864
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.6e-24 Score=176.32 Aligned_cols=179 Identities=18% Similarity=0.250 Sum_probs=134.9
Q ss_pred chHHHHHHHhcccCcceeEEEe-c-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhccc
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~-~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~ 80 (196)
.|.++|.++||.+|.|-.+.++ + ..+.++||+||.|+..+|+++|| +..+..++|+.|.|.++.+............
T Consensus 17 ~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~ 96 (678)
T KOG0127|consen 17 STGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGEN 96 (678)
T ss_pred cchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccc
Confidence 4788999999998888886544 3 36789999999999999999999 5788899999999977664432221111100
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHH
Q 029263 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160 (196)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~ 160 (196)
.. ..-+..++...........++|.|+|||+.|.+.+|+.+|+.||.+. .|.|++...|...|||||.|....
T Consensus 97 --~~----veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~-Ei~IP~k~dgklcGFaFV~fk~~~ 169 (678)
T KOG0127|consen 97 --KA----VEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVV-EIVIPRKKDGKLCGFAFVQFKEKK 169 (678)
T ss_pred --hh----hhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEE-EEEcccCCCCCccceEEEEEeeHH
Confidence 00 00000000000001112357999999999999999999999999665 599998888888899999999999
Q ss_pred HHHHHHHh-CCCccCCeEEEEEECChHHHH
Q 029263 161 DSKAAMAK-DRMTLGSRYIELFPSSHEEMD 189 (196)
Q Consensus 161 ~A~~Al~~-~g~~l~gr~i~V~~~~~~~~~ 189 (196)
+|..||.. |+..|+||+|-|.||-..+..
T Consensus 170 dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 170 DAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred HHHHHHHhccCceecCceeEEeeecccccc
Confidence 99999976 999999999999999766543
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=9.2e-24 Score=180.63 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=117.4
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHH-hcccccC-CeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMG-RRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~-~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..||++|+++|+.||.|.++. ++|.+|+++|||||+|.+.++|++||+ +|+..+. ++.+.|..+.
T Consensus 69 ~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~------------ 136 (578)
T TIGR01648 69 DLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV------------ 136 (578)
T ss_pred CCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc------------
Confidence 579999999999999999984 568899999999999999999999995 6777664 5655552221
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEe--CCCCCCceEEEEEeC
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFA 157 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~--~~~g~~~G~afV~F~ 157 (196)
...+|||+|||.++|+++|.++|+.++.....+.+.. ...++++|||||+|.
T Consensus 137 --------------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~ 190 (578)
T TIGR01648 137 --------------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYE 190 (578)
T ss_pred --------------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcC
Confidence 2468999999999999999999999863221333322 236788999999999
Q ss_pred CHHHHHHHHHh--C-CCccCCeEEEEEECChH
Q 029263 158 NAEDSKAAMAK--D-RMTLGSRYIELFPSSHE 186 (196)
Q Consensus 158 ~~~~A~~Al~~--~-g~~l~gr~i~V~~~~~~ 186 (196)
+.++|..|+.. + ...+.|+.|.|.++.++
T Consensus 191 s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~ 222 (578)
T TIGR01648 191 SHRAAAMARRKLMPGRIQLWGHVIAVDWAEPE 222 (578)
T ss_pred CHHHHHHHHHHhhccceEecCceEEEEeeccc
Confidence 99999999964 3 34688999999998764
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=8.5e-23 Score=174.73 Aligned_cols=151 Identities=21% Similarity=0.201 Sum_probs=117.6
Q ss_pred CchHHHHHHHhcccCc-ceeEEEe---cCCCcccceEEEEeCCHHHHHHHHH-hc--ccccCCeeEEEEEcChHHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMD-IVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQ-RN--RQNMGRRYVEVFRSKRQEYYKAI 75 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~-i~~v~~~---~~~g~~~G~afV~F~~~~~a~~Al~-~~--~~~l~~~~i~v~~~~~~~~~~~~ 75 (196)
..|+++|.+.|+.+++ ++++++. +..++++|||||+|.+.++|.+|++ ++ ...+.++.|.|....+...
T Consensus 149 ~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~---- 224 (578)
T TIGR01648 149 NKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEE---- 224 (578)
T ss_pred chhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccc----
Confidence 4689999999999764 5565543 2357899999999999999999994 43 2357788888865442210
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcC--CCccceEEEEeCCCCCCceEEE
Q 029263 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAF 153 (196)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~--g~~~~~v~l~~~~~g~~~G~af 153 (196)
..........+|||+|||+++|+++|+++|+.| |.+. .|.++ +||||
T Consensus 225 -----------------------~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~-rV~~~-------rgfAF 273 (578)
T TIGR01648 225 -----------------------VDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVE-RVKKI-------RDYAF 273 (578)
T ss_pred -----------------------ccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceE-EEEee-------cCeEE
Confidence 001112345789999999999999999999999 8665 56554 45999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeEEEEEECChHHH
Q 029263 154 VEFANAEDSKAAMA-KDRMTLGSRYIELFPSSHEEM 188 (196)
Q Consensus 154 V~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~~~~~~ 188 (196)
|+|.+.++|++|+. +|+..|+|+.|+|.++.+.+-
T Consensus 274 VeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 274 VHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred EEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 99999999999997 499999999999999987543
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=1.5e-22 Score=173.74 Aligned_cols=183 Identities=16% Similarity=0.174 Sum_probs=130.2
Q ss_pred CchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..|+++|+++|+.||.|..+. +.+ .+|.++|||||+|.+.++|..|| .+++..++++.|.|..+....... ..
T Consensus 306 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~----~~ 381 (509)
T TIGR01642 306 YLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQA----TI 381 (509)
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCC----Cc
Confidence 468999999999999999874 455 48999999999999999999999 589999999999997654211000 00
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCC----------CCHHHHHHHhhcCCCccceEEEEeCC----C
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFS----------AGKDDIMDFFKDFVLSEDSIHITMNS----D 145 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~----------~t~~~l~~~F~~~g~~~~~v~l~~~~----~ 145 (196)
.......+...................+.+|+|.||+.. ...++|+++|+.||.+. .|.|++.. +
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~-~v~i~~~~~~~~~ 460 (509)
T TIGR01642 382 DTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLI-NIVIPRPNGDRNS 460 (509)
T ss_pred cccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCee-EEEeeccCcCCCc
Confidence 000000000000000000000011224678999999642 12368999999999876 78887652 4
Q ss_pred CCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECChHHHHH
Q 029263 146 GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDE 190 (196)
Q Consensus 146 g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~~~~~ 190 (196)
+...|+|||+|.+.++|++|+.. ||..|+||.|.|.+.....+..
T Consensus 461 ~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~~ 506 (509)
T TIGR01642 461 TPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYKA 506 (509)
T ss_pred CCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhhc
Confidence 56689999999999999999975 9999999999999998887653
No 21
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=2.4e-23 Score=150.16 Aligned_cols=152 Identities=19% Similarity=0.231 Sum_probs=127.8
Q ss_pred chHHHHHHHhcccCcceeEEEe-cC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHhhccc
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~-~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~ 80 (196)
.|++-|.++|-.+|.|+++.+. |. +..++||||++|.+++||+.|++ +|...|.|++|.|..++..+.
T Consensus 21 vs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~--------- 91 (203)
T KOG0131|consen 21 VSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQK--------- 91 (203)
T ss_pred HHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccc---------
Confidence 5789999999999999998654 44 88899999999999999999997 688899999999977661110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCH
Q 029263 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANA 159 (196)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~ 159 (196)
....+..+||+||.+.+++..|.+.|+.||.+...=.+.+++ +|.++|+|||-|.+.
T Consensus 92 ----------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf 149 (203)
T KOG0131|consen 92 ----------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF 149 (203)
T ss_pred ----------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH
Confidence 011235799999999999999999999999654233566665 799999999999999
Q ss_pred HHHHHHHHh-CCCccCCeEEEEEECChH
Q 029263 160 EDSKAAMAK-DRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 160 ~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 186 (196)
+.+.+|+.. ||+.+++|+|+|+++.++
T Consensus 150 easd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 150 EASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred HHHHHHHHHhccchhcCCceEEEEEEec
Confidence 999999975 999999999999998654
No 22
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.89 E-value=5e-22 Score=169.36 Aligned_cols=155 Identities=12% Similarity=0.013 Sum_probs=119.3
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH---hcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ---RNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~---~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..||++|+++|+.||.|.++.+.. ++|+|||+|.+.++|++||+ .++..++|++|.|..+...+..
T Consensus 13 ~~te~~L~~~f~~fG~V~~v~i~~----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~------- 81 (481)
T TIGR01649 13 DVVEADLVEALIPFGPVSYVMMLP----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK------- 81 (481)
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEC----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc-------
Confidence 468999999999999999986653 45899999999999999996 3678899999999776532210
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCH
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~ 159 (196)
+... ............+|+|.||++.+|+++|+++|+.||.+. .|.+..+. .+|+|||+|.+.
T Consensus 82 ---~~~~----------~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~-~v~i~~~~---~~~~afVef~~~ 144 (481)
T TIGR01649 82 ---RDGN----------SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVL-RIVTFTKN---NVFQALVEFESV 144 (481)
T ss_pred ---cCCC----------CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEE-EEEEEecC---CceEEEEEECCH
Confidence 0000 000000111235799999999999999999999999876 77776543 247999999999
Q ss_pred HHHHHHHH-hCCCccCC--eEEEEEECCh
Q 029263 160 EDSKAAMA-KDRMTLGS--RYIELFPSSH 185 (196)
Q Consensus 160 ~~A~~Al~-~~g~~l~g--r~i~V~~~~~ 185 (196)
++|.+|+. +||..|.| +.|+|.+++.
T Consensus 145 ~~A~~A~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 145 NSAQHAKAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred HHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence 99999996 59999954 6899988865
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.1e-22 Score=164.05 Aligned_cols=147 Identities=20% Similarity=0.261 Sum_probs=131.7
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~ 80 (196)
..||..|.++|+++|.++++.+ .|. + +-|||||.|.++.||++|| ++|...+.|++|.+.++.+..
T Consensus 9 ~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~---------- 76 (369)
T KOG0123|consen 9 DVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP---------- 76 (369)
T ss_pred cCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC----------
Confidence 4689999999999999999864 466 5 9999999999999999999 689999999999996665221
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHH
Q 029263 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160 (196)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~ 160 (196)
..|||.||++++|..+|.++|+.||.+. +|++..+..| ++|| ||+|.+++
T Consensus 77 ---------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~il-S~kv~~~~~g-~kg~-FV~f~~e~ 126 (369)
T KOG0123|consen 77 ---------------------------SLVFIKNLDESIDNKSLYDTFSEFGNIL-SCKVATDENG-SKGY-FVQFESEE 126 (369)
T ss_pred ---------------------------ceeeecCCCcccCcHHHHHHHHhhcCee-EEEEEEcCCC-ceee-EEEeCCHH
Confidence 1299999999999999999999999777 8999999999 9999 99999999
Q ss_pred HHHHHHHh-CCCccCCeEEEEEECChHHHHHH
Q 029263 161 DSKAAMAK-DRMTLGSRYIELFPSSHEEMDEA 191 (196)
Q Consensus 161 ~A~~Al~~-~g~~l~gr~i~V~~~~~~~~~~~ 191 (196)
+|.+|+.+ ||..+.|+.|.|.+..+++++..
T Consensus 127 ~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~ 158 (369)
T KOG0123|consen 127 SAKKAIEKLNGMLLNGKKIYVGLFERKEEREA 158 (369)
T ss_pred HHHHHHHHhcCcccCCCeeEEeeccchhhhcc
Confidence 99999987 99999999999999988877654
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.87 E-value=2.4e-20 Score=158.28 Aligned_cols=185 Identities=17% Similarity=0.137 Sum_probs=129.1
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHH----HHH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYY----KAI 75 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~----~~~ 75 (196)
..|+++|+++|+.||.|..|. +.+. +|.++|||||+|.+.++|.+|| .+++..+.|+.|.|..+...... ...
T Consensus 197 ~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~ 276 (457)
T TIGR01622 197 NITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTF 276 (457)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhh
Confidence 578999999999999999985 4454 6799999999999999999999 58999999999999764321100 000
Q ss_pred hhccc----------------------cC---CCCCCCCCC--------------C--CC-------------CCCCCCC
Q 029263 76 ANEVS----------------------DV---RGGSPHRSI--------------P--RA-------------KSHDEGK 101 (196)
Q Consensus 76 ~~~~~----------------------~~---~~~~~~~~~--------------~--~~-------------~~~~~~~ 101 (196)
..... .. ...-++... . .+ .......
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (457)
T TIGR01622 277 EDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPST 356 (457)
T ss_pred ccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcc
Confidence 00000 00 000000000 0 00 0000000
Q ss_pred CCCCcccEEEEcCCCCCCC----------HHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CC
Q 029263 102 DSAVHTGILRLRGLPFSAG----------KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DR 170 (196)
Q Consensus 102 ~~~~~~~~l~v~nLp~~~t----------~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g 170 (196)
.....+.+|+|.||....+ .+||++.|++||.+. .|.+.. ..+.|++||+|.+.++|.+|+.. ||
T Consensus 357 ~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~-~v~v~~---~~~~G~~fV~F~~~e~A~~A~~~lnG 432 (457)
T TIGR01622 357 NNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV-HIYVDT---KNSAGKIYLKFSSVDAALAAFQALNG 432 (457)
T ss_pred cCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee-EEEEeC---CCCceeEEEEECCHHHHHHHHHHhcC
Confidence 0123568999999965544 368999999999775 566652 35679999999999999999975 99
Q ss_pred CccCCeEEEEEECChHHHHHH
Q 029263 171 MTLGSRYIELFPSSHEEMDEA 191 (196)
Q Consensus 171 ~~l~gr~i~V~~~~~~~~~~~ 191 (196)
..++||.|.|.+...+.|..+
T Consensus 433 r~f~gr~i~~~~~~~~~~~~~ 453 (457)
T TIGR01622 433 RYFGGKMITAAFVVNDVYDMS 453 (457)
T ss_pred cccCCeEEEEEEEcHHHHHhh
Confidence 999999999999999888654
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=3.5e-22 Score=157.99 Aligned_cols=158 Identities=20% Similarity=0.249 Sum_probs=126.5
Q ss_pred hHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 5 QVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
-||-|+..|.+||.|.+|. .-|+ +|+++|||||+|+-+|.|..|+ ++|+.+||||.|+|.....-.....+-...
T Consensus 126 ~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~v-- 203 (544)
T KOG0124|consen 126 REDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMV-- 203 (544)
T ss_pred chHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHH--
Confidence 4789999999999999984 3465 9999999999999999999999 689999999999995433111000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHH
Q 029263 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAE 160 (196)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~ 160 (196)
.+....-.+|||..+.++.+++||+..|+.||.+. .+.|-+++ .+.++||+|++|.+..
T Consensus 204 -------------------qeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~-~C~LAr~pt~~~HkGyGfiEy~n~q 263 (544)
T KOG0124|consen 204 -------------------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV-KCQLARAPTGRGHKGYGFIEYNNLQ 263 (544)
T ss_pred -------------------HHHHHhhheEEeeecCCCccHHHHHHHHHhhccee-eEEeeccCCCCCccceeeEEecccc
Confidence 00111236899999999999999999999999766 79999988 4569999999999999
Q ss_pred HHHHHHH-hCCCccCCeEEEEEECC
Q 029263 161 DSKAAMA-KDRMTLGSRYIELFPSS 184 (196)
Q Consensus 161 ~A~~Al~-~~g~~l~gr~i~V~~~~ 184 (196)
+-..|+. +|-..|||.+|+|..+.
T Consensus 264 s~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 264 SQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred chHHHhhhcchhhcccceEeccccc
Confidence 8888886 49999999999997663
No 26
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.87 E-value=9e-22 Score=162.48 Aligned_cols=163 Identities=22% Similarity=0.250 Sum_probs=130.8
Q ss_pred chHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 4 PQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
.++-||.+||+.+|.|.+|+ |.|. +++++|.|||+|.+.+....||.+.|+.+.|-+|.|.+...+.-. .+...
T Consensus 191 ~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr--~a~~s-- 266 (549)
T KOG0147|consen 191 NPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNR--AANAS-- 266 (549)
T ss_pred CCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHH--HHhcc--
Confidence 35679999999999999995 5564 899999999999999999999999999999999988665433211 11000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHH
Q 029263 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAE 160 (196)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~ 160 (196)
.+ ...+....+-..|||+||.++.|+++|+.+|++||-++ .|.+.+|. +|.++|||||+|.+.+
T Consensus 267 --------~a------~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie-~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 267 --------PA------LQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIE-NVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred --------cc------ccccccccchhhhhhcccccCchHHHHhhhccCcccce-eeeeccccccccccCcceEEEecHH
Confidence 00 00000111112399999999999999999999999887 89999887 9999999999999999
Q ss_pred HHHHHHH-hCCCccCCeEEEEEECCh
Q 029263 161 DSKAAMA-KDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 161 ~A~~Al~-~~g~~l~gr~i~V~~~~~ 185 (196)
+|..|+. +||..|.||.|.|...+.
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeee
Confidence 9999985 599999999999988753
No 27
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.85 E-value=1.7e-20 Score=153.25 Aligned_cols=179 Identities=36% Similarity=0.559 Sum_probs=138.4
Q ss_pred chHHHHHHHhcccCcceeE---EEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhccc
Q 029263 4 PQVQVLCTIHHQLMDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v---~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~ 80 (196)
-|++||.+||++ .+|+.. ++++..|++.|.|||+|++.+.|+.||.+|...++.|.|+|++++..++.....+...
T Consensus 115 cte~dI~~FFaG-L~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~ 193 (510)
T KOG4211|consen 115 CTEEDIVEFFAG-LEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDG 193 (510)
T ss_pred CcHHHHHHHhcC-CcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhcccccc
Confidence 489999999999 999874 4678899999999999999999999999999999999999999999888665422110
Q ss_pred --------c----CCC-------CCC-----C-----------------------------CCCCCCCC--CCC-----C
Q 029263 81 --------D----VRG-------GSP-----H-----------------------------RSIPRAKS--HDE-----G 100 (196)
Q Consensus 81 --------~----~~~-------~~~-----~-----------------------------~~~~~~~~--~~~-----~ 100 (196)
. .+. ..+ . +....+.. ... .
T Consensus 194 ~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~ 273 (510)
T KOG4211|consen 194 RVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGD 273 (510)
T ss_pred ccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCccc
Confidence 0 000 000 0 00000000 000 0
Q ss_pred -CCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEE
Q 029263 101 -KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179 (196)
Q Consensus 101 -~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~ 179 (196)
......+.++++++||+.+++.+|..+|++.... .|.+-..++|+.+|.|+|+|.|.++|..||.+++..++.|.|.
T Consensus 274 ~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~--~v~i~ig~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVE 351 (510)
T KOG4211|consen 274 YGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY--RVHIEIGPDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVE 351 (510)
T ss_pred ccCCCCCCceeeecCCCccCCCcchhhhcCCCCce--eEEEEeCCCCccCCcceeecccchhhHhhhccCCcccCcceee
Confidence 0112223689999999999999999999997654 5888888999999999999999999999999999999999999
Q ss_pred EEECCh
Q 029263 180 LFPSSH 185 (196)
Q Consensus 180 V~~~~~ 185 (196)
..+...
T Consensus 352 lFln~~ 357 (510)
T KOG4211|consen 352 LFLNGA 357 (510)
T ss_pred ecccCC
Confidence 988754
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.85 E-value=5e-21 Score=162.03 Aligned_cols=166 Identities=20% Similarity=0.264 Sum_probs=130.7
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecCCCc----ccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHh
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHKNNK----FTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIA 76 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~~g~----~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~ 76 (196)
..|.++|..+|+..|.|.++.| ..+++. +.|||||+|.++++|+.|++ ++|+.|+|..|.|..+...+ .
T Consensus 526 ~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~-----~ 600 (725)
T KOG0110|consen 526 DTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKP-----A 600 (725)
T ss_pred ccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcc-----c
Confidence 3578999999999999999843 444443 55999999999999999995 68899999999987666111 0
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeC-CCCCCceEEEEE
Q 029263 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDGRPTGEAFVE 155 (196)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~-~~g~~~G~afV~ 155 (196)
...+ ...........|.|+||||.++..+|+++|+.||-+. +|+|+.. ..+.++|||||+
T Consensus 601 ~~~g------------------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlk-svRlPKK~~k~a~rGF~Fv~ 661 (725)
T KOG0110|consen 601 STVG------------------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLK-SVRLPKKIGKGAHRGFGFVD 661 (725)
T ss_pred cccc------------------cccccccccceeeeeccchHHHHHHHHHHHhccccee-eeccchhhcchhhccceeee
Confidence 0000 0000111245799999999999999999999999665 7999876 467789999999
Q ss_pred eCCHHHHHHHHHh-CCCccCCeEEEEEECChHHHHHHH
Q 029263 156 FANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEAL 192 (196)
Q Consensus 156 F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~~~~~~~ 192 (196)
|-++.+|.+|+.. ..++|.||.|.+.|++....-+++
T Consensus 662 f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~~e~~ 699 (725)
T KOG0110|consen 662 FLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNTMEAL 699 (725)
T ss_pred ccCcHHHHHHHHhhcccceechhhheehhccchHHHHH
Confidence 9999999999964 899999999999999877665554
No 29
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.83 E-value=2e-20 Score=148.92 Aligned_cols=160 Identities=19% Similarity=0.294 Sum_probs=134.8
Q ss_pred chHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 4 PQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
.|++.|+++|+.||+|.++.+ .|+ +|+++||+||+|++.+...++|......++++.|++.++.+.+....
T Consensus 18 ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~------- 90 (311)
T KOG4205|consen 18 TTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTK------- 90 (311)
T ss_pred ccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCcccccc-------
Confidence 588999999999999999754 454 89999999999999999999998888889999999987764431000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHH
Q 029263 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAE 160 (196)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~ 160 (196)
......+..|||++||+.+++++++++|++||.+. .+.++.|. +.+++||+||.|.+.+
T Consensus 91 -------------------~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~-~~~~~~d~~~~~~rgFgfv~~~~e~ 150 (311)
T KOG4205|consen 91 -------------------VGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVA-DVVIMYDKTTSRPRGFGFVTFDSED 150 (311)
T ss_pred -------------------cccccceeEEEecCcCCCCchHHHhhhhhccceeE-eeEEeecccccccccceeeEecccc
Confidence 00011467899999999999999999999999665 45555555 8999999999999999
Q ss_pred HHHHHHHhCCCccCCeEEEEEECChHHHHH
Q 029263 161 DSKAAMAKDRMTLGSRYIELFPSSHEEMDE 190 (196)
Q Consensus 161 ~A~~Al~~~g~~l~gr~i~V~~~~~~~~~~ 190 (196)
.+.+++.+....|.|+.+.|..|.+.++..
T Consensus 151 sVdkv~~~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 151 SVDKVTLQKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ccceecccceeeecCceeeEeeccchhhcc
Confidence 999999999999999999999999988765
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.7e-19 Score=145.36 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=133.9
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~ 80 (196)
..+..+|.++|+.||+|+++.+ .+.+| ++|| ||+|+++++|++|| ++||..+.++.|-|....+.++.......
T Consensus 87 ~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-- 162 (369)
T KOG0123|consen 87 SIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-- 162 (369)
T ss_pred ccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc--
Confidence 3567899999999999999964 56787 9999 99999999999999 57999999999999777765542211100
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHH
Q 029263 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160 (196)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~ 160 (196)
....-..+++.|++.+.+++.|..+|..+|.+. ++.++.+..|.++||+||.|.+++
T Consensus 163 ----------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~-s~~v~~~~~g~~~~~gfv~f~~~e 219 (369)
T KOG0123|consen 163 ----------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSIT-SVAVMRDSIGKSKGFGFVNFENPE 219 (369)
T ss_pred ----------------------hhhhhhhhheeccccccchHHHHHhhcccCcce-EEEEeecCCCCCCCccceeecChh
Confidence 111223589999999999999999999999876 889999999999999999999999
Q ss_pred HHHHHHHh-CCCccCCeEEEEEECChHHHH
Q 029263 161 DSKAAMAK-DRMTLGSRYIELFPSSHEEMD 189 (196)
Q Consensus 161 ~A~~Al~~-~g~~l~gr~i~V~~~~~~~~~ 189 (196)
+|..|+.. |+..+++..+.|..+...-.+
T Consensus 220 ~a~~av~~l~~~~~~~~~~~V~~aqkk~e~ 249 (369)
T KOG0123|consen 220 DAKKAVETLNGKIFGDKELYVGRAQKKSER 249 (369)
T ss_pred HHHHHHHhccCCcCCccceeecccccchhh
Confidence 99999976 999999999999999774333
No 31
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.80 E-value=2.9e-19 Score=137.64 Aligned_cols=136 Identities=16% Similarity=0.185 Sum_probs=117.9
Q ss_pred CCchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHhhccc
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~ 80 (196)
+..++++|+.+|.+||+|+++.|+. -||||..+++..|+.||. +++..|.|..|.|..+...
T Consensus 12 ~~~~~~elr~lFe~ygkVlECDIvK------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK----------- 74 (346)
T KOG0109|consen 12 REATEQELRSLFEQYGKVLECDIVK------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK----------- 74 (346)
T ss_pred cccchHHHHHHHHhhCceEeeeeec------ccceEEeecccccHHHHhhcccceecceEEEEEecccc-----------
Confidence 4578999999999999999985542 299999999999999996 8999999999999776622
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHH
Q 029263 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 160 (196)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~ 160 (196)
.....+|+|+||.+.||.+++++.|+++|.+. .+.|+++ |+||+|...+
T Consensus 75 -----------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpvi-ecdivkd-------y~fvh~d~~e 123 (346)
T KOG0109|consen 75 -----------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVI-ECDIVKD-------YAFVHFDRAE 123 (346)
T ss_pred -----------------------CCCccccccCCCCccccCHHHhhhhcccCCce-eeeeecc-------eeEEEEeecc
Confidence 11345799999999999999999999999665 5788854 9999999999
Q ss_pred HHHHHHHh-CCCccCCeEEEEEECCh
Q 029263 161 DSKAAMAK-DRMTLGSRYIELFPSSH 185 (196)
Q Consensus 161 ~A~~Al~~-~g~~l~gr~i~V~~~~~ 185 (196)
+|..|+.. |++.+.|++++|.+++.
T Consensus 124 da~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 124 DAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred chHHHHhcccccccccceeeeeeecc
Confidence 99999964 99999999999999864
No 32
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.79 E-value=1.3e-19 Score=144.12 Aligned_cols=175 Identities=33% Similarity=0.563 Sum_probs=138.9
Q ss_pred CchHHHHHHHhcccCcceeE--EE-ecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDV--LF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v--~~-~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
-+++++|..||.. ..|..- .+ .+..|+..|+|.|.|.+.|.-+.|+++++..+++++|+|+.++.++.........
T Consensus 71 q~Sd~~ia~ff~g-l~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s 149 (508)
T KOG1365|consen 71 QSSDQDIARFFKG-LNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTS 149 (508)
T ss_pred CcccCCHHHHHhh-hhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCcc
Confidence 4678999999988 777762 23 3568899999999999999999999999999999999999988665422111000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhc---CCCccceEEEEeCCCCCCceEEEEEe
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEF 156 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~---~g~~~~~v~l~~~~~g~~~G~afV~F 156 (196)
. .+.... ....--+|.+++|||+||+.|+.+||.+ .+...+.|-++...+|+.+|.|||.|
T Consensus 150 -----------~-e~~~fl----sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 150 -----------N-EAAPFL----SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred -----------c-cCCCCC----CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 0 000000 1112357889999999999999999963 23222368888889999999999999
Q ss_pred CCHHHHHHHHHhCCCccCCeEEEEEECChHHHHHHHHc
Q 029263 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 194 (196)
Q Consensus 157 ~~~~~A~~Al~~~g~~l~gr~i~V~~~~~~~~~~~~~~ 194 (196)
..+++|..||.+|...||-|+|++.-++..|++++++|
T Consensus 214 a~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr 251 (508)
T KOG1365|consen 214 ACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNR 251 (508)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHh
Confidence 99999999999999999999999999999999999876
No 33
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=4.3e-18 Score=122.76 Aligned_cols=80 Identities=24% Similarity=0.407 Sum_probs=73.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
.+.+|||+|||+++|+++|+++|++||.+. .+.++.+. +|+++|||||+|.+.++|++|+.. |+..|+|+.|+|.++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVV-DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 456899999999999999999999999776 78888776 899999999999999999999974 999999999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 754
No 34
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=4.6e-17 Score=102.85 Aligned_cols=69 Identities=35% Similarity=0.568 Sum_probs=64.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEE
Q 029263 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIE 179 (196)
Q Consensus 110 l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~ 179 (196)
|||+|||.++|+++|+++|++||.+. .+.+..+.++.++|+|||+|.+.++|++|+. +||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIE-SIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEE-EEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcc-cccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999875 7888887899999999999999999999998 599999999986
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=3.3e-16 Score=119.74 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=72.7
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
.++.-|||..||.+.++.+|.+.|-+||.+. +.++..|. |+.++.|+||.|+++.+|+.|+.. ||..||=++|+|.+
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhiv-SaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIV-SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhcccccee-eeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 4567899999999999999999999999666 56666565 999999999999999999999976 99999999999988
Q ss_pred CChHH
Q 029263 183 SSHEE 187 (196)
Q Consensus 183 ~~~~~ 187 (196)
..+++
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 77665
No 36
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.69 E-value=1.5e-16 Score=100.86 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=62.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 029263 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 179 (196)
Q Consensus 110 l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~ 179 (196)
|||+|||+++++++|+++|+.+|.+. .+.+..++.|.++|+|||+|.++++|.+|+.. ++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~-~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVE-KVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEE-EEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcc-eEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999765 89999888899999999999999999999987 88999999985
No 37
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.67 E-value=5e-16 Score=120.03 Aligned_cols=75 Identities=16% Similarity=0.298 Sum_probs=69.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
.++|||+|||+.+|+++|+++|+.||.+. .|.|+.+.. ++|||||+|.++++|+.||.+||..|+||.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~-~V~I~~d~~--~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIE-YVEMQSENE--RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeecCC--CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 46899999999999999999999999876 899987753 5799999999999999999889999999999999985
No 38
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=6.2e-16 Score=121.09 Aligned_cols=84 Identities=24% Similarity=0.340 Sum_probs=76.2
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 103 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
.....++|+|.|+||..-+.||+..|++||.+. +|.|+.++.| ++|||||+|++.+||++|-.+ ||..+.||+|+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vl-dVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVL-DVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCcee-eEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 344568999999999999999999999999776 7999999887 899999999999999999976 9999999999999
Q ss_pred ECChHHH
Q 029263 182 PSSHEEM 188 (196)
Q Consensus 182 ~~~~~~~ 188 (196)
.++..-+
T Consensus 170 ~ATarV~ 176 (376)
T KOG0125|consen 170 NATARVH 176 (376)
T ss_pred ccchhhc
Confidence 9987643
No 39
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=1.2e-15 Score=124.57 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=72.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+++|+++|+++|+.||.+. .|+|+.|. +|+++|||||+|.++++|++|+. +|+..|.+++|+|.++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~-~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPIN-TCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 457899999999999999999999999776 78998885 89999999999999999999996 4999999999999987
Q ss_pred Ch
Q 029263 184 SH 185 (196)
Q Consensus 184 ~~ 185 (196)
.+
T Consensus 185 ~p 186 (346)
T TIGR01659 185 RP 186 (346)
T ss_pred cc
Confidence 65
No 40
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.63 E-value=2.2e-15 Score=114.83 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=70.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
.+++|||+||++.+|+++|++||+.||.+. +|.|+++ +...|+|||+|.++++|+.|+.+||..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~-~V~I~~D--~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIE-HVEIIRS--GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeE-EEEEecC--CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 468999999999999999999999999887 8999887 566789999999999999999999999999999999854
No 41
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.63 E-value=1.9e-14 Score=107.80 Aligned_cols=174 Identities=17% Similarity=0.186 Sum_probs=118.7
Q ss_pred hHHHHHH----HhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC-hHHHHHHHhhc
Q 029263 5 QVQVLCT----IHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK-RQEYYKAIANE 78 (196)
Q Consensus 5 te~dl~~----~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~-~~~~~~~~~~~ 78 (196)
..++|+. +|+.||+|++|... ++.+.+|.|||.|.+.+.|..|+ .++|..+.|++|.+..+. +.+........
T Consensus 22 ~~~elkrsL~~LFsqfG~ildI~a~-kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~ 100 (221)
T KOG4206|consen 22 KKDELKRSLYLLFSQFGKILDISAF-KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGT 100 (221)
T ss_pred cHHHHHHHHHHHHHhhCCeEEEEec-CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCce
Confidence 3456666 99999999998743 57788999999999999999999 689999999999995543 33332221111
Q ss_pred cccC--C------C-CCCCCCCCCC-------CCCCC-CCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEE
Q 029263 79 VSDV--R------G-GSPHRSIPRA-------KSHDE-GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 141 (196)
Q Consensus 79 ~~~~--~------~-~~~~~~~~~~-------~~~~~-~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~ 141 (196)
.... + . .+...+.++. .-... .......+.++|+.|||..++.+.+..+|++|.--. .|+++
T Consensus 101 ~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~k-eir~i 179 (221)
T KOG4206|consen 101 FVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFK-EIRLI 179 (221)
T ss_pred eccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccc-eeEec
Confidence 1000 0 0 0000000000 00000 122355678999999999999999999999996333 48887
Q ss_pred eCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccC-CeEEEEEECC
Q 029263 142 MNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLG-SRYIELFPSS 184 (196)
Q Consensus 142 ~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~-gr~i~V~~~~ 184 (196)
... .|.|||+|.+...|..|.+. .+..+- .-.+.|..++
T Consensus 180 ~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 180 PPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred cCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 543 45899999999999999864 766665 6777777654
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=7.6e-15 Score=118.72 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=69.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
.++.-+|+.+||.+.-+.+|-+.|.+||.+. +..+..|+ ||.++-|+||.|++..+|..||.. ||..+++++++|-+
T Consensus 422 peGanlfiyhlPqefgdq~l~~~f~pfG~Vl-sakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 422 PEGANLFIYHLPQEFGDQDLIATFQPFGGVL-SAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCccceeeeeCchhhhhHHHHHHhcccccee-EEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 4556799999999999999999999999776 55555554 999999999999999999999976 99999999999987
Q ss_pred C
Q 029263 183 S 183 (196)
Q Consensus 183 ~ 183 (196)
.
T Consensus 501 k 501 (510)
T KOG0144|consen 501 K 501 (510)
T ss_pred e
Confidence 5
No 43
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.62 E-value=1.1e-15 Score=129.71 Aligned_cols=184 Identities=16% Similarity=0.031 Sum_probs=140.3
Q ss_pred chHHHHHHHhcccCcceeE-E-EecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 4 PQVQVLCTIHHQLMDIVDV-L-FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v-~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
..+.|+++||-+ ..|..+ + +....+...|-++|.|....++++|+++|...+-.|++.+.+....+|..+.......
T Consensus 323 ~~~nd~rkfF~g-~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~ 401 (944)
T KOG4307|consen 323 NDFNDGRKFFPG-RNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGAPPFQAGV 401 (944)
T ss_pred cccchhhhhcCc-ccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccCccccccC
Confidence 456799999988 667665 2 2333555588999999999999999999999999999999998877775433222111
Q ss_pred C---CCC--CCCCCCCCCCCCCCC--CCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEE
Q 029263 82 V---RGG--SPHRSIPRAKSHDEG--KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154 (196)
Q Consensus 82 ~---~~~--~~~~~~~~~~~~~~~--~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV 154 (196)
. .+. .++...+++.....+ ......+.+|||..||+.+++.++.++|...-.+++.|.|.+-++++.++.|||
T Consensus 402 ~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv 481 (944)
T KOG4307|consen 402 PPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFV 481 (944)
T ss_pred CCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhh
Confidence 0 011 111111111111111 122345789999999999999999999999888888899999999999999999
Q ss_pred EeCCHHHHHHHHHh-CCCccCCeEEEEEECChHHH
Q 029263 155 EFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEM 188 (196)
Q Consensus 155 ~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~~~ 188 (196)
.|..++++..|+.+ +...++.|.|+|..++.++|
T Consensus 482 ~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 482 AFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred eeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 99999999888887 99999999999999999988
No 44
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=5.9e-15 Score=111.46 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=74.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
...+|.|.|||.++++++|+++|.+||.+. .|.|.+|+ ||.++|||||.|.++++|.+|+.. ||+-+++=.|+|.++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~-rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPIT-RVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccc-eeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 456899999999999999999999999776 89999888 999999999999999999999975 999999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
+|.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 874
No 45
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=2.4e-15 Score=113.07 Aligned_cols=77 Identities=23% Similarity=0.353 Sum_probs=69.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
.+|||+|||+.++.++|+++|++||.+.+.|.|....+|+++|||||+|++.+.|.+|+.-..-.|+||+-.+.|+.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 47999999999999999999999997775666666669999999999999999999999877789999999988875
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=122.80 Aligned_cols=177 Identities=20% Similarity=0.200 Sum_probs=115.5
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHH-----Hh
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKA-----IA 76 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~-----~~ 76 (196)
+.+.++|...|..||.|..|++. +.|. .|+|+|.++.+|+.|. .+....+..-++-+......-.... ..
T Consensus 396 ~t~~~elt~~F~~fG~i~rvllp-~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~ 471 (725)
T KOG0110|consen 396 GTLSEELTEAFLRFGEIGRVLLP-PGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLS 471 (725)
T ss_pred ccccHHHHHHhhcccccceeecC-cccc---eeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccc
Confidence 35678999999999999999644 6554 4999999999999999 4666666555543333221111100 00
Q ss_pred hcc-ccCCCCCCCC----CCCCC--CC-----CCCCCCCCCcccE-EEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeC
Q 029263 77 NEV-SDVRGGSPHR----SIPRA--KS-----HDEGKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 143 (196)
Q Consensus 77 ~~~-~~~~~~~~~~----~~~~~--~~-----~~~~~~~~~~~~~-l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~ 143 (196)
... ......+..+ ..+-. .. +...........+ |||+||++++|.+++..+|...|.+. ++.|...
T Consensus 472 ~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~Vl-S~~I~kk 550 (725)
T KOG0110|consen 472 AESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVL-SIEISKK 550 (725)
T ss_pred cccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEE-EEEEecc
Confidence 000 0000000000 00000 00 0000001111223 99999999999999999999999776 7777655
Q ss_pred CCCC----CceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 144 SDGR----PTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 144 ~~g~----~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
+++. +.|||||+|.++++|++|+.. +|+.|.|..|.|.++-
T Consensus 551 kd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 551 KDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred ccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 5443 569999999999999999976 9999999999999985
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=6.6e-14 Score=101.85 Aligned_cols=155 Identities=19% Similarity=0.157 Sum_probs=107.9
Q ss_pred hHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhccccCC
Q 029263 5 QVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR 83 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~~~ 83 (196)
-|.||.++|.+||.|.+|-++++.| ..+||||+|++.-||+.|| -+++..+++-.+.|.....-. .....+
T Consensus 19 RekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr-------~s~~~~ 90 (241)
T KOG0105|consen 19 REKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR-------SSSDRR 90 (241)
T ss_pred hhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC-------cccccc
Confidence 3679999999999999998777665 4579999999999999999 589999999998985544110 000111
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHH
Q 029263 84 GG-SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 162 (196)
Q Consensus 84 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A 162 (196)
+. +.......+....-..+.-....+|.|++||++.+++||+++....|.+. ...+.+| |++.|+|...++-
T Consensus 91 G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvC-fadv~rD------g~GvV~~~r~eDM 163 (241)
T KOG0105|consen 91 GSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVC-FADVQRD------GVGVVEYLRKEDM 163 (241)
T ss_pred cccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCee-eeeeecc------cceeeeeeehhhH
Confidence 10 00000000000111122334567899999999999999999999988665 3344443 4899999999999
Q ss_pred HHHHHh-CCCccC
Q 029263 163 KAAMAK-DRMTLG 174 (196)
Q Consensus 163 ~~Al~~-~g~~l~ 174 (196)
+.|+.. +.+.+.
T Consensus 164 kYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 164 KYAVRKLDDQKFR 176 (241)
T ss_pred HHHHHhhcccccc
Confidence 999965 555443
No 48
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.58 E-value=1.4e-13 Score=111.69 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=129.8
Q ss_pred hHHHHHHHhcc-cCcceeE-EEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHh---hc
Q 029263 5 QVQVLCTIHHQ-LMDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIA---NE 78 (196)
Q Consensus 5 te~dl~~~F~~-~g~i~~v-~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~---~~ 78 (196)
-++||+++|.. .|+|.-| ++.|.+|+++|||.|+|+++|.+++|++ +|+..+.+|++.|......+...... ..
T Consensus 57 rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g 136 (608)
T KOG4212|consen 57 RWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDG 136 (608)
T ss_pred hhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeecc
Confidence 46899999965 4677777 5789999999999999999999999995 78999999999997766443221111 10
Q ss_pred cc---------cCC--------------CCCCCCCCCCCC------CC--------------------CCCCC-CCCccc
Q 029263 79 VS---------DVR--------------GGSPHRSIPRAK------SH--------------------DEGKD-SAVHTG 108 (196)
Q Consensus 79 ~~---------~~~--------------~~~~~~~~~~~~------~~--------------------~~~~~-~~~~~~ 108 (196)
.. ..+ ...+.++.-+.. .. .+... .++.-.
T Consensus 137 ~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~ 216 (608)
T KOG4212|consen 137 GGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHN 216 (608)
T ss_pred CcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccc
Confidence 00 000 000000000000 00 00011 223345
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
.+||.||.+.+....|++.|.-.|.++ +|.+-.|+.|.++|+|.++|.++-+|..|+.+ ++.-+..++..+.+.
T Consensus 217 k~fvanl~~~vg~~kL~qvfgmAGkv~-~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 217 KVFVANLDYKVGNKKLKQVFGMAGKVQ-SVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred eeeeeccccccchHHHHHHhccceeee-eeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 799999999999999999999888765 89999999999999999999999999999987 888888888888773
No 49
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=9.7e-15 Score=100.09 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=69.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
.+.+|||+||++.+||++|.++|+.+|.+. .|.+-.|. +..+=||+||+|-++++|+.||.. ||+.|..|+|+|.+.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~ir-riiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIR-RIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchh-eeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 457999999999999999999999999876 67776666 667889999999999999999986 999999999999886
No 50
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=6.7e-14 Score=92.56 Aligned_cols=85 Identities=24% Similarity=0.391 Sum_probs=73.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
..+..|||+|||+++|.++..++|+.||.+. .|++-. +..-+|.|||.|++-.+|++|+.. +|..+.+++|.|-+-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~Ir-QIRiG~--~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIR-QIRIGN--TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceE-EEEecC--ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 4568999999999999999999999999765 566543 345679999999999999999975 999999999999999
Q ss_pred ChHHHHHHH
Q 029263 184 SHEEMDEAL 192 (196)
Q Consensus 184 ~~~~~~~~~ 192 (196)
.+.+..+.+
T Consensus 93 q~~~~~~~~ 101 (124)
T KOG0114|consen 93 QPEDAFKLM 101 (124)
T ss_pred CHHHHHHHH
Confidence 988766554
No 51
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.9e-14 Score=108.59 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=115.2
Q ss_pred CCCchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 1 MELPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 1 ~~~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
++.+.+.||..||.+||.+.++.++. ||+||+|.+.-+|..|+ .+++..|++-.+.|........
T Consensus 10 ~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~-------- 75 (216)
T KOG0106|consen 10 PYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR-------- 75 (216)
T ss_pred CCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeeccccccc--------
Confidence 35678999999999999999987553 68999999999999999 6899988876655543331110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCH
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~ 159 (196)
.++.+++.+- .+ ..............+.|.|++-.+.+++|.+.|+++|.+. ...+ ..++|||+|.+.
T Consensus 76 --~~g~~~~g~r-~~-~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~-~~~~-------~~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 76 --GRGRPRGGDR-RS-DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVT-YVDA-------RRNFAFVEFSEQ 143 (216)
T ss_pred --ccCCCCCCCc-cc-hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCc-hhhh-------hccccceeehhh
Confidence 0011111000 00 0000111233457899999999999999999999999665 2222 456999999999
Q ss_pred HHHHHHHHh-CCCccCCeEEEEEECChH
Q 029263 160 EDSKAAMAK-DRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 160 ~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 186 (196)
++|..|+.+ ++..+.|+.|++......
T Consensus 144 ~da~ra~~~l~~~~~~~~~l~~~~~~~d 171 (216)
T KOG0106|consen 144 EDAKRALEKLDGKKLNGRRISVEKNSRD 171 (216)
T ss_pred hhhhhcchhccchhhcCceeeecccCcc
Confidence 999999986 999999999999655443
No 52
>smart00362 RRM_2 RNA recognition motif.
Probab=99.55 E-value=4.7e-14 Score=88.56 Aligned_cols=71 Identities=31% Similarity=0.528 Sum_probs=64.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
+|+|+|||..+++++|+++|++||.+. .+.+..+. +.++|+|||+|.+.++|.+|+.. ++..+.|+.|+|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~-~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIE-SVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEE-EEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999999765 67777766 78899999999999999999976 9999999999873
No 53
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.54 E-value=2e-14 Score=123.87 Aligned_cols=77 Identities=25% Similarity=0.372 Sum_probs=70.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+++++++|+++|+.||.+. +|+++.|. +|+++|||||+|.+.++|.+|+.. ||..|+||.|+|...
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~-sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIK-SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEE-EEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 346899999999999999999999999776 79998886 899999999999999999999975 999999999999754
No 54
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=3.4e-14 Score=98.32 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=73.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
-++++|||.|+...+|+++|.+.|..||.+. +|.|-+|. +|..+|||+|+|.+.++|++|+.. ||..|.|.+|.|.+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiK-NihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIK-NIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhccccc-ceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 4679999999999999999999999999776 89997776 999999999999999999999975 99999999999998
Q ss_pred C
Q 029263 183 S 183 (196)
Q Consensus 183 ~ 183 (196)
+
T Consensus 149 ~ 149 (170)
T KOG0130|consen 149 C 149 (170)
T ss_pred E
Confidence 7
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.52 E-value=3.3e-13 Score=112.21 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=119.4
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChH-HHHHH----
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQ-EYYKA---- 74 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~-~~~~~---- 74 (196)
+.||++|+.+|++||.|..|. .+|. +|.++||+||+|.+.++|++|+ ++|+..|-|+.|+|...+.. +...+
T Consensus 289 Nite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~ 368 (549)
T KOG0147|consen 289 NITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQ 368 (549)
T ss_pred CchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccc
Confidence 579999999999999999985 4565 9999999999999999999998 68999999999998654311 11000
Q ss_pred Hhhc----cc----------------cCCCCCCCCCCCC---------------C-CC--CCCC----CCCCCcccEEEE
Q 029263 75 IANE----VS----------------DVRGGSPHRSIPR---------------A-KS--HDEG----KDSAVHTGILRL 112 (196)
Q Consensus 75 ~~~~----~~----------------~~~~~~~~~~~~~---------------~-~~--~~~~----~~~~~~~~~l~v 112 (196)
.... .+ +..+..-.+.|.. . .. ...+ +.....+.|+.+
T Consensus 369 ~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL 448 (549)
T KOG0147|consen 369 FDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLL 448 (549)
T ss_pred cccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHH
Confidence 0000 00 0000000000000 0 00 0000 011145678889
Q ss_pred cCC--CCCCCH--------HHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 113 RGL--PFSAGK--------DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 113 ~nL--p~~~t~--------~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
+|| |.+.|+ +|+.+-.+++|-+. +|..|++ +.|+-||.|.+.+.|..|+.. ||.-+.||.|+.+
T Consensus 449 ~nMFdpstete~n~d~eI~edV~Eec~k~g~v~---hi~vd~n--s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~ 523 (549)
T KOG0147|consen 449 SNMFDPSTETEPNWDQEIREDVIEECGKHGKVC---HIFVDKN--SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAK 523 (549)
T ss_pred hhcCCcccccCcchhhHHHHHHHHHHHhcCCee---EEEEccC--CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEE
Confidence 998 222221 46667778888653 4444432 338999999999999999976 9999999999998
Q ss_pred ECChHHHH
Q 029263 182 PSSHEEMD 189 (196)
Q Consensus 182 ~~~~~~~~ 189 (196)
+-..+.+.
T Consensus 524 ~~~~~~Y~ 531 (549)
T KOG0147|consen 524 YLPLERYH 531 (549)
T ss_pred Eeehhhhh
Confidence 87655544
No 56
>PLN03213 repressor of silencing 3; Provisional
Probab=99.52 E-value=8.6e-14 Score=114.57 Aligned_cols=78 Identities=15% Similarity=0.284 Sum_probs=69.9
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCH--HHHHHHHHh-CCCccCCeEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA--EDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~--~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
..+.+|||+||++.+|++||+..|..||.+. .|.|+ ..+| +|||||+|.+. .++.+|+.. ||..+.||.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVk-dVEIp-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVD-AVEFV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEe-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3457899999999999999999999999887 88888 4577 99999999987 688999975 9999999999999
Q ss_pred ECChH
Q 029263 182 PSSHE 186 (196)
Q Consensus 182 ~~~~~ 186 (196)
.|.+.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99765
No 57
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.4e-13 Score=105.52 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=73.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECCh
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 185 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 185 (196)
.-|||..|...++-++|++.|.+||.+. ..++++|. |++++|||||-|-+.++|+.|+.. ||.-|++|.|+..++++
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS-~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVS-DAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccc-cceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4699999999999999999999999776 67888887 999999999999999999999975 99999999999999988
Q ss_pred HH
Q 029263 186 EE 187 (196)
Q Consensus 186 ~~ 187 (196)
+-
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 64
No 58
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.48 E-value=4.6e-13 Score=84.41 Aligned_cols=73 Identities=30% Similarity=0.481 Sum_probs=66.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
+|+|+|||..+++++|+++|+.+|.+. .+.+..++.+.+.|+|||+|.+.++|..|+.. ++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~-~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVE-SVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEE-EEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999765 78888887778899999999999999999976 99999999999863
No 59
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=6.4e-15 Score=106.75 Aligned_cols=77 Identities=18% Similarity=0.351 Sum_probs=70.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHH-HhCCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAM-AKDRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al-~~~g~~l~gr~i~V~~~ 183 (196)
.+..|||+|||+..||.||...|++||.+. .|.|++|+ ||+++||||+.|++.-+-.-|+ ++||..|.||.|+|.=.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~v-dinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIV-DINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceE-EEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 456899999999999999999999999766 79999998 9999999999999999999999 46999999999999744
No 60
>smart00360 RRM RNA recognition motif.
Probab=99.47 E-value=3.3e-13 Score=84.31 Aligned_cols=69 Identities=26% Similarity=0.490 Sum_probs=61.8
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 112 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 112 v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
|+|||..+++++|+++|++||.+. .+.+..++ ++.++|+|||+|.+.++|..|+.. ++..++|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~-~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIE-SVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEe-EEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999665 67777766 689999999999999999999976 9999999999873
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.46 E-value=1.1e-13 Score=100.45 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=72.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
...+|||+||+..++++-|+++|-+.|.+. ++++++|. +..++|||||+|.++++|+.|++. |...|.||+|+|..+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv-~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVV-NLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCcee-eeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 456899999999999999999999999776 79999988 778999999999999999999987 999999999999999
Q ss_pred C
Q 029263 184 S 184 (196)
Q Consensus 184 ~ 184 (196)
+
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 62
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=5e-13 Score=103.74 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=71.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
=.||||.-|++.++|..|+..|+.||.+. .|+|+.+. +|+++|||||+|.+.-+-.+|... +|.+|+|+.|-|.+-
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~Ik-rirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIK-RIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcce-eEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 46899999999999999999999999887 89999996 999999999999999999999976 999999999999875
No 63
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.45 E-value=1.8e-13 Score=101.14 Aligned_cols=77 Identities=21% Similarity=0.364 Sum_probs=71.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
-..|.|-||.+-+|.++|..+|++||.+- .|.|+.|. |+.++|||||.|....+|+.||.. +|.+|+|+.|+|.+|.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vg-DVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVG-DVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCccc-ceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45799999999999999999999999664 69999998 999999999999999999999975 9999999999998774
No 64
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=7.4e-13 Score=103.84 Aligned_cols=77 Identities=23% Similarity=0.470 Sum_probs=72.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
..+|||+|||+.+|+++|.++|..||.+. .|.+..+. +|.++|+|||+|.+.++|..|+.. ++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~-~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVK-RVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCcee-EEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 58999999999999999999999999875 78998885 999999999999999999999987 9999999999999964
No 65
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.43 E-value=5.4e-13 Score=96.21 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=58.2
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..||++|+++|++||.|.++. +.|. +|+++|||||+|.+.++|+.|| ++|+..++++.|.|..+.
T Consensus 45 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 45 GTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 468999999999999999984 4454 8999999999999999999999 589999999999997765
No 66
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=7.2e-13 Score=95.63 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=64.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEECCh
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~~~ 185 (196)
...|||+||+..+++.||...|..||.+- +|-+-. .+.|||||+|+++-||+.|+. +||..|.|..|+|.+++-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lr-svWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLR-SVWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcce-eEEEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 56899999999999999999999999765 454444 466799999999999999996 599999999999999864
No 67
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.1e-13 Score=101.76 Aligned_cols=82 Identities=26% Similarity=0.312 Sum_probs=74.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
..++|||++|...+|+.-|.+.|-+||.+. .|.++.|. +++++|||||+|.-.+||.+|+. +|+..|-||.|+|.++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~-dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIK-DIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchh-hcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 457999999999999999999999999765 79998886 89999999999999999999995 5999999999999999
Q ss_pred ChHHH
Q 029263 184 SHEEM 188 (196)
Q Consensus 184 ~~~~~ 188 (196)
.|...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 87643
No 68
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=9.1e-13 Score=109.63 Aligned_cols=78 Identities=17% Similarity=0.402 Sum_probs=72.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECCh
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 185 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 185 (196)
..|||+|+||++++++|..+|+..|.+. +++++.|. +|+++||||++|.+.++|..|+.. ||..++||+|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~-s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVL-SFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccc-eeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7899999999999999999999999776 79999887 999999999999999999999976 99999999999999864
Q ss_pred H
Q 029263 186 E 186 (196)
Q Consensus 186 ~ 186 (196)
.
T Consensus 98 ~ 98 (435)
T KOG0108|consen 98 R 98 (435)
T ss_pred c
Confidence 4
No 69
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.1e-11 Score=101.02 Aligned_cols=77 Identities=17% Similarity=0.334 Sum_probs=69.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCcc-CCeEEEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTL-GSRYIELFP 182 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l-~gr~i~V~~ 182 (196)
.+.-|||+.||.++.|++|.-+|+..|.+- .++|++|+ +|.++|||||+|.+.++|+.|+.. |++.| .|+.|.|.+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~-elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIY-ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhcccee-eEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 456799999999999999999999999666 69999995 999999999999999999999975 88877 588888877
Q ss_pred C
Q 029263 183 S 183 (196)
Q Consensus 183 ~ 183 (196)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 6
No 70
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.36 E-value=4.2e-12 Score=79.83 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=54.5
Q ss_pred CCchHHHHHHHhcccCcceeEEEe-cCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEE
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVE 62 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~ 62 (196)
...|+++|+++|+.||.|..+.+. +.+++++|+|||+|.+.++|.+|++ +++..++++.|+
T Consensus 8 ~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 8 PDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp TTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 457999999999999999888544 4799999999999999999999995 899999999874
No 71
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=3.4e-12 Score=97.59 Aligned_cols=78 Identities=19% Similarity=0.324 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECCh
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 185 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 185 (196)
.-|.|.=||...|.++++.+|+..|.++ +++|++|+ +|.+.||+||-|.+++||++|++- ||..|..+.|.|+++.+
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiE-ScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIE-SCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhccccee-eeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 4588999999999999999999999988 99999999 999999999999999999999975 99999999999999865
Q ss_pred H
Q 029263 186 E 186 (196)
Q Consensus 186 ~ 186 (196)
.
T Consensus 121 S 121 (360)
T KOG0145|consen 121 S 121 (360)
T ss_pred C
Confidence 3
No 72
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.35 E-value=1.9e-11 Score=98.69 Aligned_cols=171 Identities=16% Similarity=0.178 Sum_probs=119.4
Q ss_pred CCchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhccc
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~ 80 (196)
|.-|.|-|-.+|+-||.|..|.|....+ --|.|++.+...|+-|+ .++|.++.|+.|+|..+.........+. +
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~eg--q 382 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREG--Q 382 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCC--C
Confidence 3468899999999999999996654333 35999999999999999 6899999999999988765443211111 1
Q ss_pred cCCCCCCC---C-----CCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEE
Q 029263 81 DVRGGSPH---R-----SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 152 (196)
Q Consensus 81 ~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~a 152 (196)
+.++-... . ..++.+.... .-+.+.++++.|+|.+++|++++.+|..-|......... ++.+-+|
T Consensus 383 ~d~glT~dy~~spLhrfkkpgsKN~~n---i~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kma 455 (492)
T KOG1190|consen 383 EDQGLTKDYGNSPLHRFKKPGSKNYQN---IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMA 455 (492)
T ss_pred ccccccccCCCCchhhccCcccccccc---cCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCccee
Confidence 11110000 0 0011111111 123457899999999999999999999887543122221 2344589
Q ss_pred EEEeCCHHHHHHHHHh-CCCccCCe-EEEEEECC
Q 029263 153 FVEFANAEDSKAAMAK-DRMTLGSR-YIELFPSS 184 (196)
Q Consensus 153 fV~F~~~~~A~~Al~~-~g~~l~gr-~i~V~~~~ 184 (196)
++.+.+.++|..|+-. |...+++. -|+|+.++
T Consensus 456 l~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 456 LPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred ecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 9999999999999965 88999876 89998875
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.35 E-value=6.5e-12 Score=102.19 Aligned_cols=85 Identities=19% Similarity=0.372 Sum_probs=74.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhc-CCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~-~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
..+.+|+.|+||++.+++|+++|.. .|.++ .|.|+.|..|+++|+|.|+|++++.+++|+.. |.+.+.||+|.|+-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~-yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVE-YVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceE-eeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3456999999999999999999964 56776 89999999999999999999999999999976 999999999999877
Q ss_pred ChHHHHHH
Q 029263 184 SHEEMDEA 191 (196)
Q Consensus 184 ~~~~~~~~ 191 (196)
-.++..++
T Consensus 122 ~d~q~~~~ 129 (608)
T KOG4212|consen 122 HDEQRDQY 129 (608)
T ss_pred Cchhhhhh
Confidence 55555444
No 74
>smart00361 RRM_1 RNA recognition motif.
Probab=99.31 E-value=7.1e-12 Score=79.37 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=50.8
Q ss_pred HHHHHHHhc----ccCcceeEE--Eec-CC--CcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEE
Q 029263 6 VQVLCTIHH----QLMDIVDVL--FVH-KN--NKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEV 63 (196)
Q Consensus 6 e~dl~~~F~----~~g~i~~v~--~~~-~~--g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v 63 (196)
++||+++|+ .||.|.++. +.+ .+ |+++|+|||.|.+.++|.+|+ .+|+..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 689999999 999999873 444 35 899999999999999999999 58999999998865
No 75
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.2e-11 Score=90.13 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=64.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||.++-+.+|+++|-+||.+. .|.|.... .+.+||||+|+++-+|+.|+.- +|+.++|..|+|.++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~-~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIR-EIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceE-EEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999654 45554332 3457999999999999999976 999999999999987
No 76
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=2.4e-11 Score=76.92 Aligned_cols=59 Identities=19% Similarity=0.360 Sum_probs=50.5
Q ss_pred HHHHHHHhh----cCCCccceEE-EEeCC-C--CCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 029263 121 KDDIMDFFK----DFVLSEDSIH-ITMNS-D--GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 180 (196)
Q Consensus 121 ~~~l~~~F~----~~g~~~~~v~-l~~~~-~--g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V 180 (196)
+++|+++|+ .||.+. +|. ++.++ + |.++|+|||+|.+.++|.+|+.. ||..+.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~-~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVG-KINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCee-EEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999999 999776 564 55444 4 89999999999999999999975 999999999986
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.27 E-value=2.9e-11 Score=76.35 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=50.4
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHHhc-ccccCCeeEE
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQRN-RQNMGRRYVE 62 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~-~~~l~~~~i~ 62 (196)
..|++||+++|+.||.|.++. +.+++|.++|+|||+|.+.++|.+|++.+ +..++|+.|.
T Consensus 9 ~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 9 STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 468999999999999988884 45667999999999999999999999764 5889998764
No 78
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.25 E-value=3.2e-11 Score=72.90 Aligned_cols=55 Identities=27% Similarity=0.431 Sum_probs=46.7
Q ss_pred HHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 124 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 124 l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
|.++|++||.+. .|.+.... +|+|||+|.+.++|..|+.. ||..++|++|+|.+|
T Consensus 1 L~~~f~~fG~V~-~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVK-KIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EE-EEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEE-EEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999776 67666443 58999999999999999975 999999999999875
No 79
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.25 E-value=2.4e-11 Score=94.23 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=56.3
Q ss_pred CchHHHHHHHhcccCcceeEEEe-cCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~-~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..||+||++||+.||+|.+|.+. +. .++|||||+|.++++|+.||.+++..|+++.|.|.++.
T Consensus 15 ~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 15 KATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 47999999999999999999654 43 35799999999999999999999999999999998765
No 80
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.5e-11 Score=91.97 Aligned_cols=66 Identities=18% Similarity=0.049 Sum_probs=57.8
Q ss_pred CCchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
|..+|+||+++|.+||.|..|. ..| .+|.++|||||.|.++++|.+|| .+||.-+++-.+.|..+.
T Consensus 199 ed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 199 EDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred cccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 5678999999999999999984 345 49999999999999999999999 589998888888886655
No 81
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=3.3e-11 Score=92.11 Aligned_cols=64 Identities=9% Similarity=0.079 Sum_probs=57.0
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..||+||++||+.||+|.+|.+... +...|+|||+|.++++|+.||.++|..|.+++|.|.+..
T Consensus 16 ~tTE~dLrefFS~~G~I~~V~I~~D-~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 16 KATEKDVYDFFSHCGAIEHVEIIRS-GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEecC-CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4799999999999999999965432 456789999999999999999999999999999998866
No 82
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.22 E-value=8.4e-11 Score=71.01 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=46.6
Q ss_pred HHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEE
Q 029263 9 LCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFR 65 (196)
Q Consensus 9 l~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~ 65 (196)
|.++|++||+|.++.+.... +|+|||+|.+.++|..|+ .+|+..++|++|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68999999999999766443 589999999999999999 5899999999999864
No 83
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.1e-11 Score=98.83 Aligned_cols=76 Identities=26% Similarity=0.399 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
.+|||+.+.|...|+.|+..|.+||.+. +|.+.-|+ ||+++|||||+|+-++.|.-|+.. ||..||||.|.|...+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIK-SInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIK-SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcc-eeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4799999999999999999999999776 88888777 999999999999999999999965 9999999999998654
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.20 E-value=1.9e-09 Score=85.64 Aligned_cols=174 Identities=17% Similarity=0.239 Sum_probs=117.2
Q ss_pred chHHHHHHHhcccCccee--------EEEe-cCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChH---H
Q 029263 4 PQVQVLCTIHHQLMDIVD--------VLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQ---E 70 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~--------v~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~---~ 70 (196)
.|-+++.++|++||-|.. |.++ +..|+.+|=|.+.|-..++++.|++ +++..+.|..|.|..+.=+ +
T Consensus 146 iT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge 225 (382)
T KOG1548|consen 146 ITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGE 225 (382)
T ss_pred ccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccC
Confidence 478899999999887753 4444 6789999999999999999999996 6999999999999765411 0
Q ss_pred HHHHHhhc--cccCC----CCCCCCCCCCCCCCCCCCCCCCcccEEEEcCC----CCCCC-------HHHHHHHhhcCCC
Q 029263 71 YYKAIANE--VSDVR----GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL----PFSAG-------KDDIMDFFKDFVL 133 (196)
Q Consensus 71 ~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL----p~~~t-------~~~l~~~F~~~g~ 133 (196)
+....... ..+.+ .....-+|.... ....-.....+|.++|| .+..+ +++|++--+.||.
T Consensus 226 ~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~---~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~ 302 (382)
T KOG1548|consen 226 YDASKKEKGKCKDKKKLKKQQQKLLDWRPDR---DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQ 302 (382)
T ss_pred cCcccccccccccHHHHHHHHHhhcccCCCc---cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 00000000 00000 000000111000 11122345678999998 23444 3566666789998
Q ss_pred ccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 134 ~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
+. +|.+.. ..+.|.+-|.|.+.++|..|++. +|+.++||.|+-++..
T Consensus 303 v~-~vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 303 VR-KVVVYD---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred cc-eEEEec---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 76 555542 35778999999999999999986 9999999999987763
No 85
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=2.9e-11 Score=95.19 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=56.2
Q ss_pred HHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChH
Q 029263 6 VQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 6 e~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~ 69 (196)
|.||+..|.+||.|+||- |.+.+| +|||+||.|++.+||++|- ++|+..+.||.|+|..++.+
T Consensus 110 dpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 110 DPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 679999999999999994 455554 9999999999999999999 78999999999999887744
No 86
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=6.5e-10 Score=87.05 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=98.5
Q ss_pred CchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcCh--HHHHHHHhh
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR--QEYYKAIAN 77 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~--~~~~~~~~~ 77 (196)
..|+++|.++|..||.|..+. ..+ .+|.++|+|||+|.+.++|..|++ +++..+.++.|.|..... ......
T Consensus 126 ~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--- 202 (306)
T COG0724 126 DVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSEL--- 202 (306)
T ss_pred CCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccccccccccc---
Confidence 358999999999999998875 446 489999999999999999999995 677999999999977542 000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCC-CCceEEEEEe
Q 029263 78 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG-RPTGEAFVEF 156 (196)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g-~~~G~afV~F 156 (196)
... ..... .................+++.+++...+..++..+|..+|.+. .+.+.....+ ......++.+
T Consensus 203 -----~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 203 -----SNN-LDASF-AKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIV-RASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred -----ccc-cchhh-hccccccccccccccceeeccccccccchhHHHHhccccccce-eeeccCCCCCcccccccccch
Confidence 000 00000 0000111112234457899999999999999999999999653 3444433322 2333444444
Q ss_pred CCHHHHHHHH
Q 029263 157 ANAEDSKAAM 166 (196)
Q Consensus 157 ~~~~~A~~Al 166 (196)
.....+..++
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 4334444433
No 87
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=4.3e-11 Score=90.31 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=54.4
Q ss_pred chHHHHHHHhcccCcceeE-EEecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEE
Q 029263 4 PQVQVLCTIHHQLMDIVDV-LFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 65 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v-~~~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~ 65 (196)
.+.++|+++|+.||+|+++ +|.|+ +|+++||+||.|.+.+.|.+|++.....++||.-.+..
T Consensus 24 T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 24 THKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred cchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 3578999999999999996 56675 99999999999999999999999988999998765543
No 88
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.14 E-value=2.8e-10 Score=84.37 Aligned_cols=86 Identities=23% Similarity=0.411 Sum_probs=72.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCC-CccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g-~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
....+++..+|.-..+.+|..+|.+|| .+. .+++.++. ||.++|||||+|++++.|+-|-. +|++.|+|+.|.+..
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~-r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVT-RFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeE-EEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 346799999999999999999999995 443 56665665 99999999999999999988875 599999999999999
Q ss_pred CChH-HHHHHH
Q 029263 183 SSHE-EMDEAL 192 (196)
Q Consensus 183 ~~~~-~~~~~~ 192 (196)
.-++ ..+..+
T Consensus 127 mppe~~v~~~~ 137 (214)
T KOG4208|consen 127 MPPEQKVEKNL 137 (214)
T ss_pred eCchhhhhhhh
Confidence 9888 444443
No 89
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.14 E-value=5.2e-11 Score=88.28 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=56.8
Q ss_pred chHHHHHHHhcccCcceeEEEe-cC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEc
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRS 66 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~-~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~ 66 (196)
.|.++|+.+|++||.|.||.|. |. ++.++|||||.|....||+.|+ .++|.+|+|+.+.|.-+
T Consensus 25 Tspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 25 TSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred CCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 5789999999999999999765 54 9999999999999999999999 58999999999988544
No 90
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.09 E-value=3.2e-09 Score=79.79 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=49.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCcc
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTL 173 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l 173 (196)
..+|||-||.++|||++|+.+|+.|.--. +--++.+.|.+ .|||+|..-+.|..||. +.|..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~--~l~~~~~~g~~--vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFH--ILKIRARGGMP--VAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCce--EEEEecCCCcc--eEeecHHHHHHHHHHHHHhhccee
Confidence 35899999999999999999999985322 33345555655 89999999999999995 466554
No 91
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.09 E-value=2.6e-10 Score=86.99 Aligned_cols=136 Identities=20% Similarity=0.203 Sum_probs=102.5
Q ss_pred ecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCC
Q 029263 25 VHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDS 103 (196)
Q Consensus 25 ~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (196)
.+.-+.-.++||+.|...+.-.++- +.++++++.+.|+....+ .|..+ +. .+-
T Consensus 133 ~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt----------------------swedP--sl--~ew 186 (290)
T KOG0226|consen 133 RDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT----------------------SWEDP--SL--AEW 186 (290)
T ss_pred hcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc----------------------ccCCc--cc--ccC
Confidence 4556677889999998888777776 457777777765543222 11100 00 111
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
.....+||++.|.-+++.+-|-..|..|-... ..++++++ +|+++||+||-|.++.++.+||.. ||..+|+|+|.+.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~-~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQ-KAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchh-hccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 23457899999999999999999999987554 46677776 999999999999999999999976 9999999999987
Q ss_pred ECChHH
Q 029263 182 PSSHEE 187 (196)
Q Consensus 182 ~~~~~~ 187 (196)
.+.-++
T Consensus 266 kS~wke 271 (290)
T KOG0226|consen 266 KSEWKE 271 (290)
T ss_pred hhhHHh
Confidence 775554
No 92
>smart00360 RRM RNA recognition motif.
Probab=99.09 E-value=5.1e-10 Score=69.57 Aligned_cols=61 Identities=23% Similarity=0.213 Sum_probs=52.2
Q ss_pred CchHHHHHHHhcccCcceeEEEe-cC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEE
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEV 63 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~-~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v 63 (196)
..|+++|+++|+.||.|..+.+. +. ++.++|+|||+|.+.++|..|++ +++..++++.+.|
T Consensus 7 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 7 DVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred ccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 46899999999999999888543 43 68999999999999999999994 6778888888766
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.1e-09 Score=92.24 Aligned_cols=178 Identities=19% Similarity=0.214 Sum_probs=117.9
Q ss_pred CchHHHHHHHhcccCcceeE-EEec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDV-LFVH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v-~~~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..++++++++...||.+..- ++.| .+|.++||||-+|.+.--...|+ .+||..++++.+.|..+...........
T Consensus 300 ~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~-- 377 (500)
T KOG0120|consen 300 YLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNF-- 377 (500)
T ss_pred ccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccC--
Confidence 46889999999997777664 3444 47999999999999999999999 6899999999888854432211100000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCC--CCC-CCH-------HHHHHHhhcCCCccceEEEEeC-C---C
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL--PFS-AGK-------DDIMDFFKDFVLSEDSIHITMN-S---D 145 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL--p~~-~t~-------~~l~~~F~~~g~~~~~v~l~~~-~---~ 145 (196)
. ......+.-..... ......+.+|.+.|+ |.+ ..+ ++++.-+++||.+. +|.+++. . .
T Consensus 378 ----~-~~~~~~~~i~~~~~-q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~-~v~ipr~~~~~~~ 450 (500)
T KOG0120|consen 378 ----N-ISQSQVPGIPLLMT-QMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVR-SVEIPRPYPDENP 450 (500)
T ss_pred ----C-ccccccccchhhhc-ccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCcee-EEecCCCCCCCCc
Confidence 0 00000000000000 011224456666665 111 111 34555667888776 7888766 2 4
Q ss_pred CCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECChHHHH
Q 029263 146 GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMD 189 (196)
Q Consensus 146 g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~~~~ 189 (196)
....|--||+|.+.+++++|+.. +|.++.||.|-.++..+..+.
T Consensus 451 ~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~ 495 (500)
T KOG0120|consen 451 VPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYH 495 (500)
T ss_pred CCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhh
Confidence 45678999999999999999975 999999999999999877654
No 94
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.04 E-value=5.2e-09 Score=84.82 Aligned_cols=177 Identities=18% Similarity=0.209 Sum_probs=111.2
Q ss_pred hHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEE--EEEcChHHHHHHHhh----
Q 029263 5 QVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVE--VFRSKRQEYYKAIAN---- 77 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~--v~~~~~~~~~~~~~~---- 77 (196)
|-|-|..+|+.||.|..|+...++... .|.|+|.+...|..|- .++|+.+...... +--+.-...+.....
T Consensus 163 slDVLHqvFS~fG~VlKIiTF~Knn~F--QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSR 240 (492)
T KOG1190|consen 163 SLDVLHQVFSKFGFVLKIITFTKNNGF--QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSR 240 (492)
T ss_pred EHHHHHHHHhhcceeEEEEEEecccch--hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccc
Confidence 557899999999999998744443222 5999999999999997 5777776543322 211110000000000
Q ss_pred -ccccCC-CC----------------CCCCCC-CCC-----C--CCCCCCCCCC-cccEEEEcCCC-CCCCHHHHHHHhh
Q 029263 78 -EVSDVR-GG----------------SPHRSI-PRA-----K--SHDEGKDSAV-HTGILRLRGLP-FSAGKDDIMDFFK 129 (196)
Q Consensus 78 -~~~~~~-~~----------------~~~~~~-~~~-----~--~~~~~~~~~~-~~~~l~v~nLp-~~~t~~~l~~~F~ 129 (196)
...... .+ .+.... +.+ . ....++.... .+..|.|.||- +.+|.+-|.-+|+
T Consensus 241 DyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFg 320 (492)
T KOG1190|consen 241 DYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFG 320 (492)
T ss_pred cccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHh
Confidence 000000 00 000000 000 0 0000111111 24678888875 6799999999999
Q ss_pred cCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECChHHH
Q 029263 130 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEM 188 (196)
Q Consensus 130 ~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~~~ 188 (196)
-||.+. .|+|+..+. --|+|.+.+...|+-|+.. +|..|.|++|+|++++...+
T Consensus 321 vYGdVq-RVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 321 VYGDVQ-RVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred hhcceE-EEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 999886 888887642 3599999999999999975 99999999999999976543
No 95
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=1.1e-09 Score=84.40 Aligned_cols=87 Identities=23% Similarity=0.305 Sum_probs=73.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCC-ccC--CeEEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRM-TLG--SRYIELF 181 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~-~l~--gr~i~V~ 181 (196)
..+.|||+=|...-.|+|++.+|.+||.++ .+.+++..+|.++|+|||+|.+..+|..|+.. ||. .+- ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~-e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIE-ECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcc-eeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 457899999999999999999999999876 78999999999999999999999999999975 764 443 4789999
Q ss_pred ECChHHHHHHHHc
Q 029263 182 PSSHEEMDEALSR 194 (196)
Q Consensus 182 ~~~~~~~~~~~~~ 194 (196)
+++.+.- +.+||
T Consensus 97 ~ADTdkE-R~lRR 108 (371)
T KOG0146|consen 97 FADTDKE-RTLRR 108 (371)
T ss_pred eccchHH-HHHHH
Confidence 9966543 33443
No 96
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.04 E-value=9e-10 Score=85.09 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECChH
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 186 (196)
..|+|.|||+.++.+||+++|..||... .+.+-+++.|.+.|.|-|.|...+||.+|+.. |+..|+|+++.+.++...
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~-r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELK-RVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccce-EEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 5799999999999999999999998443 67778889999999999999999999999976 999999999999887654
No 97
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=6.2e-10 Score=76.63 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=54.2
Q ss_pred chHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEE
Q 029263 4 PQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVF 64 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~ 64 (196)
.||++|-++|+.||.|..|++ .| .+..+.||+||+|.+.++|+.||+ .+++.|+.++|.+-
T Consensus 48 ttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 48 TTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred ecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 589999999999999999753 34 477899999999999999999996 69999999999883
No 98
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=6.1e-10 Score=93.66 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=107.6
Q ss_pred cccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCcccE
Q 029263 30 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 109 (196)
Q Consensus 30 ~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (196)
..+.|||++|.+.++|..|+..++..+.|++..+...+.......+-..... ...-...+. ..........
T Consensus 221 ~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~--~~~~~~~~~-------~t~~~~~~~k 291 (500)
T KOG0120|consen 221 LEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQ--LGKVGLLPA-------STDVPDSPNK 291 (500)
T ss_pred ccccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhcc--ccccCCccc-------ccCcccccch
Confidence 3456999999999999999999999999998888655422211111111000 000000000 0112234567
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECChHH
Q 029263 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 187 (196)
Q Consensus 110 l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~~ 187 (196)
+||.|||...++++++++.+.||... ...++.+. +|.++||||.+|.++.....|+.- ||..++++.|.|..+-...
T Consensus 292 i~v~~lp~~l~~~q~~Ell~~fg~lk-~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 292 IFVGGLPLYLTEDQVKELLDSFGPLK-AFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred hhhccCcCccCHHHHHHHHHhcccch-hheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 99999999999999999999999654 67777776 799999999999999999999964 9999999999998875443
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.00 E-value=2.5e-09 Score=66.67 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=51.7
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEE
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEV 63 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v 63 (196)
..++++|+++|+.||.+..+.+....+.++|+|||+|.+.++|..|++ +++..+.++.|.|
T Consensus 10 ~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 10 DVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred cCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 468899999999999999885543237889999999999999999995 6778888888776
No 100
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.97 E-value=7.8e-10 Score=85.97 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=63.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEECChH
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~~~~ 186 (196)
..|||+|||..+++++|+.+|++||.+. .+.|+++ ||||+.++...|+.|+. +|++.|+|..|.|..++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVl-ECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVL-ECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceE-eeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 3689999999999999999999999665 5888855 99999999999999997 6999999999999988644
No 101
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.2e-10 Score=101.56 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=108.1
Q ss_pred hHHHHHHHhcccCcceeEEE--ecCCCcccceEEEEeCCHHHHHHHHHhc-ccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 5 QVQVLCTIHHQLMDIVDVLF--VHKNNKFTGEAFCVLGYPLQVDFALQRN-RQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~--~~~~g~~~G~afV~F~~~~~a~~Al~~~-~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
.+.||...|+.++.+..+.+ ...+++.+|.||++|..++++.+|+..+ +..++
T Consensus 680 ~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------------------------ 735 (881)
T KOG0128|consen 680 SEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------------------------ 735 (881)
T ss_pred cCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh------------------------
Confidence 56789999988776665532 3347889999999999999999999654 43333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHH
Q 029263 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161 (196)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~ 161 (196)
...|+|+|.|+.+|.++++.+++.+|.+. +.+++....|+++|.|+|.|.++.+
T Consensus 736 -------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~-~~~~vt~r~gkpkg~a~v~y~~ea~ 789 (881)
T KOG0128|consen 736 -------------------------KISVAISGPPFQGTKEELKSLASKTGNVT-SLRLVTVRAGKPKGKARVDYNTEAD 789 (881)
T ss_pred -------------------------hhhhheeCCCCCCchHHHHhhccccCCcc-ccchhhhhccccccceeccCCCcch
Confidence 11489999999999999999999999876 6778888899999999999999999
Q ss_pred HHHHHHh-CCCccCCeEEEEEECCh
Q 029263 162 SKAAMAK-DRMTLGSRYIELFPSSH 185 (196)
Q Consensus 162 A~~Al~~-~g~~l~gr~i~V~~~~~ 185 (196)
|.+++.. +...+..+.+.|.++.+
T Consensus 790 ~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 790 ASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhcccchhhhhhhcCccccccCC
Confidence 9999976 88888888888777655
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.95 E-value=8.1e-08 Score=77.27 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=116.8
Q ss_pred hHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCee--EE----------EEEcChHHH
Q 029263 5 QVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRY--VE----------VFRSKRQEY 71 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~--i~----------v~~~~~~~~ 71 (196)
|-|-|..+...+|.|..|.|..++|- .|.|+|++.+.|++|- .+||..+.... ++ |.+..+..|
T Consensus 135 tvDVly~Icnp~GkVlRIvIfkkngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~Dtw 211 (494)
T KOG1456|consen 135 TVDVLYTICNPQGKVLRIVIFKKNGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTW 211 (494)
T ss_pred chhhhhhhcCCCCceEEEEEEeccce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccc
Confidence 66788999999999999988877875 7999999999999999 57888775332 22 333333333
Q ss_pred HHHHhhcc---ccCCC-----CCC--C----CCCCC-----------------CCCC-----C----CCCCCCCcccEEE
Q 029263 72 YKAIANEV---SDVRG-----GSP--H----RSIPR-----------------AKSH-----D----EGKDSAVHTGILR 111 (196)
Q Consensus 72 ~~~~~~~~---~~~~~-----~~~--~----~~~~~-----------------~~~~-----~----~~~~~~~~~~~l~ 111 (196)
.-.+.... ++.+. +.+ . ..+.+ +... . .+......+..+.
T Consensus 212 DyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmM 291 (494)
T KOG1456|consen 212 DYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMM 291 (494)
T ss_pred cccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEE
Confidence 21111110 00000 000 0 00000 0000 0 0012233456789
Q ss_pred EcCCCCC-CCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECChH
Q 029263 112 LRGLPFS-AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 112 v~nLp~~-~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 186 (196)
|.+|... .+-+.|-.+|..||.++ .|++++.+. |.|.|++.+....++|+.. |+..+-|..|.|..++..
T Consensus 292 VyGLdh~k~N~drlFNl~ClYGNV~-rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 292 VYGLDHGKMNCDRLFNLFCLYGNVE-RVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred EEeccccccchhhhhhhhhhcCcee-eEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 9999864 67799999999999887 888887654 5999999999999999975 888889999999888643
No 103
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=2.1e-09 Score=83.79 Aligned_cols=61 Identities=15% Similarity=0.037 Sum_probs=54.9
Q ss_pred chHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEE
Q 029263 4 PQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVF 64 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~ 64 (196)
.+|.+|+..|+.||.|..|. +.| .+|+++|||||+|+.+-+...|- +.++..|+++.|.|-
T Consensus 113 T~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 113 TSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred ccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 58999999999999999985 556 49999999999999999999999 579999999988773
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.94 E-value=3.6e-09 Score=79.62 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=67.1
Q ss_pred ccEEEEcCCCCCCCHHHHHH----HhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 107 TGILRLRGLPFSAGKDDIMD----FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~----~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
+.+|||.||...+..++|+. +|++||.+ +.|+.-++.+.+|-|||.|.+.+.|-.|+.. +|..+-|++++|-
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~i---ldI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKI---LDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCe---EEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999998 99999965 3455556788999999999999999999965 9999999999999
Q ss_pred ECChH
Q 029263 182 PSSHE 186 (196)
Q Consensus 182 ~~~~~ 186 (196)
+|...
T Consensus 86 yA~s~ 90 (221)
T KOG4206|consen 86 YAKSD 90 (221)
T ss_pred cccCc
Confidence 98543
No 105
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=1.9e-09 Score=78.15 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=55.2
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
.+|+.||...|+.||.+.+|++.. ++.|||||+|+++-||+.|+ .+++..++|..|.|..++
T Consensus 21 ~a~k~eLE~~F~~yG~lrsvWvAr---nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 21 RATKRELERAFSKYGPLRSVWVAR---NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CcchHHHHHHHHhcCcceeEEEee---cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 578999999999999999997653 46789999999999999999 589999999988987765
No 106
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=1.5e-09 Score=75.48 Aligned_cols=66 Identities=12% Similarity=0.027 Sum_probs=58.0
Q ss_pred CCchHHHHHHHhcccCcceeEE--EecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~--~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
|-+||+||.+.|..||+|..+. +...+|..+|||.|+|++.++|++|+ .+|+..|-+..|.|-.|.
T Consensus 82 eEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 82 EEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred cchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 5689999999999999999974 33469999999999999999999999 689999999988885554
No 107
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=4.2e-09 Score=83.67 Aligned_cols=74 Identities=24% Similarity=0.289 Sum_probs=65.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh--CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK--DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~--~g~~l~gr~i~V~~~ 183 (196)
.-.+|||+||-..+++.+|+++|-+||.+. +|.+.. .+|+|||+|.+.+.|+.|... |...+.|++|.|.|+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeir-si~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIR-SIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCee-eEEeec-----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 347899999999999999999999999887 777764 345999999999999999864 888999999999999
Q ss_pred Ch
Q 029263 184 SH 185 (196)
Q Consensus 184 ~~ 185 (196)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 77
No 108
>PLN03213 repressor of silencing 3; Provisional
Probab=98.92 E-value=3.1e-09 Score=88.12 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=57.3
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCH--HHHHHHH-HhcccccCCeeEEEEEcCh
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYP--LQVDFAL-QRNRQNMGRRYVEVFRSKR 68 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~--~~a~~Al-~~~~~~l~~~~i~v~~~~~ 68 (196)
..|++||+.+|+.||.|.+|.|...+| +|||||+|.+. .++.+|| .+|+....|+.|+|..+.+
T Consensus 21 dVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 21 SVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 468999999999999999997666677 89999999987 6899999 6899999999999988764
No 109
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.2e-09 Score=83.49 Aligned_cols=83 Identities=23% Similarity=0.237 Sum_probs=74.2
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
.++.+.|||=-|-+-+|.+||.-+|+.||.+. ++.+++|. +|.+..||||+|.+.++.++|.-+ ++..|..|.|+|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~-sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIV-SCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccce-eeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 45568999999999999999999999999776 78888876 999999999999999999999954 9999999999999
Q ss_pred ECChHH
Q 029263 182 PSSHEE 187 (196)
Q Consensus 182 ~~~~~~ 187 (196)
.+..-.
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 885443
No 110
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.87 E-value=6.5e-09 Score=90.09 Aligned_cols=76 Identities=22% Similarity=0.432 Sum_probs=68.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
-.++||+|++||-++++.||..+|+.||.+. +|.+. .++|+|||++.++.+|.+||.+ +...+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiq-Si~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQ-SIILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccce-eEeec-----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 4568999999999999999999999999887 78776 4788999999999999999976 999999999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.-.
T Consensus 493 ~g~ 495 (894)
T KOG0132|consen 493 VGK 495 (894)
T ss_pred ccC
Confidence 543
No 111
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.87 E-value=2.2e-09 Score=86.01 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=72.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
+...||+++|++.+|++.|+++|++||.+. .+.+++|+ +++++||+||+|.+++...++|...-..|.||.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~-d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVT-DCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCcee-eEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 456899999999999999999999999776 45566665 8999999999999999999999887789999999999987
Q ss_pred hHHHH
Q 029263 185 HEEMD 189 (196)
Q Consensus 185 ~~~~~ 189 (196)
+.+..
T Consensus 84 ~r~~~ 88 (311)
T KOG4205|consen 84 SREDQ 88 (311)
T ss_pred Ccccc
Confidence 76543
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.86 E-value=1.1e-08 Score=87.74 Aligned_cols=75 Identities=33% Similarity=0.586 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
+.|.|.|+|++++-+||.+||..|....++|.+.+.+.|.++|.|.|.|+++++|.+|.. ++++.|.+|.|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 479999999999999999999999988889999999999999999999999999999995 599999999999876
No 113
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.86 E-value=1.7e-08 Score=63.13 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=52.3
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEE
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVF 64 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~ 64 (196)
..++++|+++|+.||.|..+. ..++.+.++|+|||+|.+.++|..|++ .++..+.++.+.|.
T Consensus 10 ~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 10 DVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred ccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 357899999999999998875 445566789999999999999999994 67777888888774
No 114
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.83 E-value=1.5e-08 Score=80.65 Aligned_cols=79 Identities=14% Similarity=0.273 Sum_probs=70.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccce-------EEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS-------IHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRY 177 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~-------v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~ 177 (196)
.+..|||.|||.++|-+++.++|+.||++... |+|.++..|..+|-|++.|--.+++.-|+.. ++..|+|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 34569999999999999999999999955422 7888899999999999999999999999987 999999999
Q ss_pred EEEEECC
Q 029263 178 IELFPSS 184 (196)
Q Consensus 178 i~V~~~~ 184 (196)
|+|..|.
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9998773
No 115
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.6e-09 Score=79.37 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=58.0
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcCh
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKR 68 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~ 68 (196)
--||.-|...|-+||.|.+|.+ .| .+++++|||||+|...|||..|| .+|...|.||.|.|..+.+
T Consensus 21 eVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 21 EVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred HHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 3578889999999999999954 45 59999999999999999999999 6899999999999976653
No 116
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.82 E-value=1.4e-08 Score=84.46 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=62.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEE-eCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT-MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~-~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
..|||+|||++++.++|+++|..||.+. ...|. +...+....||||+|.+.++++.|+..+-..++++.|.|..-.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik-~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIK-EGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhccccc-ccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 4599999999999999999999999555 33332 2233444499999999999999999999999999999997653
No 117
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=3.4e-10 Score=82.40 Aligned_cols=60 Identities=23% Similarity=0.195 Sum_probs=54.6
Q ss_pred chHHHHHHHhcccCcceeE-EEecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEE
Q 029263 4 PQVQVLCTIHHQLMDIVDV-LFVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEV 63 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v-~~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v 63 (196)
-||.||.-+||.||+|++| ++.|. ||+++||||+-|++.-+.-.|+ .+||..+.||.|.|
T Consensus 47 LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 47 LTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred ccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 4788999999999999999 46664 9999999999999999888899 68999999999998
No 118
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.80 E-value=1.2e-08 Score=78.84 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=70.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
....++++|+.+.+|.++++..|+.||.+. .|.++.+. .|.++|||||+|.+.+.++.|+.+|+..|.|+.|.|++.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~-~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGIN-RVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCcc-ceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 456899999999999999999999999765 67888777 667999999999999999999999999999999999875
No 119
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.79 E-value=7e-09 Score=82.68 Aligned_cols=156 Identities=18% Similarity=0.158 Sum_probs=109.5
Q ss_pred HHHHHhcccCcceeEE-Ee-cCCCcccceEEEEeCCHHHHHHHHHhcccc-cCCeeEEEEEcChHHHHHHHhhccccCCC
Q 029263 8 VLCTIHHQLMDIVDVL-FV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQN-MGRRYVEVFRSKRQEYYKAIANEVSDVRG 84 (196)
Q Consensus 8 dl~~~F~~~g~i~~v~-~~-~~~g~~~G~afV~F~~~~~a~~Al~~~~~~-l~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 84 (196)
++..++...|..++.. +. .....++|++.+.|...+.+..||++.+.. +.++.+..-...... . +
T Consensus 104 ~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~----~-------~- 171 (285)
T KOG4210|consen 104 EDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRG----L-------R- 171 (285)
T ss_pred cccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccccc----c-------c-
Confidence 4667777777777753 33 457789999999999999999999888763 333332221111000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccEEE-EcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHH
Q 029263 85 GSPHRSIPRAKSHDEGKDSAVHTGILR-LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDS 162 (196)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A 162 (196)
........ ......++| |.||++.+++++|+.+|..+|.+. .++++.++ +|.+.|+|+|.|.....+
T Consensus 172 ---------~~n~~~~~-~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~-~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 172 ---------PKNKLSRL-SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEIT-SVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred ---------ccchhccc-ccCccccceeecccccccchHHHhhhccCcCcce-eeccCCCCCccchhhhhhhhhhhchhH
Confidence 00000000 111233455 999999999999999999999776 67776655 899999999999999999
Q ss_pred HHHHHhCCCccCCeEEEEEECChH
Q 029263 163 KAAMAKDRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 163 ~~Al~~~g~~l~gr~i~V~~~~~~ 186 (196)
..|+..+...++++++.+....+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 241 KLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred HHHhhcccCcccCcccccccCCCC
Confidence 888866778899999998776543
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.74 E-value=2.9e-08 Score=73.83 Aligned_cols=67 Identities=12% Similarity=0.006 Sum_probs=54.9
Q ss_pred CchHHHHHHHhcccCccee-EEE-ec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChH
Q 029263 3 LPQVQVLCTIHHQLMDIVD-VLF-VH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~-v~~-~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~ 69 (196)
|-.+..+..+|.+|++.+. +.+ .+ .||+++|||||+|++++.|..|- .||+..|.++.+.+.-..+.
T Consensus 60 g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 60 GFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred chhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 3457889999999866655 444 33 59999999999999999999999 58999999998888766655
No 121
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=2.8e-07 Score=76.94 Aligned_cols=169 Identities=14% Similarity=0.082 Sum_probs=104.4
Q ss_pred chHHHHHHHhcccCcceeEEE--e--cCCCcccc---eEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHh
Q 029263 4 PQVQVLCTIHHQLMDIVDVLF--V--HKNNKFTG---EAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~--~--~~~g~~~G---~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~ 76 (196)
-||+.|...|..||.+.--.- . ...-.++| |+|+.|+++..+..-|..=-...++.++.|...+-.....
T Consensus 271 ise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~k~k~V--- 347 (520)
T KOG0129|consen 271 ITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTIKDKEV--- 347 (520)
T ss_pred ccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEecCcccccce---
Confidence 589999999999887643111 1 11122455 9999999999888865331112223333332222111000
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhh-cCCCccceEEEEeC-CCCCCceEEEE
Q 029263 77 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK-DFVLSEDSIHITMN-SDGRPTGEAFV 154 (196)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~-~~g~~~~~v~l~~~-~~g~~~G~afV 154 (196)
...++.-... .-...........+||||++||.-.+.++|-.+|+ -||.|. .+-|-.| +-+-++|-|-|
T Consensus 348 -QIrPW~laDs-------~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~-yaGIDtD~k~KYPkGaGRV 418 (520)
T KOG0129|consen 348 -QIRPWVLADS-------DFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVL-YVGIDTDPKLKYPKGAGRV 418 (520)
T ss_pred -eEEeeEeccc-------hhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceE-EEEeccCcccCCCCCccee
Confidence 0000000000 00000111233468999999999999999999998 688776 6888777 57889999999
Q ss_pred EeCCHHHHHHHHHhCCCccC----CeEEEEEECC
Q 029263 155 EFANAEDSKAAMAKDRMTLG----SRYIELFPSS 184 (196)
Q Consensus 155 ~F~~~~~A~~Al~~~g~~l~----gr~i~V~~~~ 184 (196)
+|.+.....+|+..--..|. .++|+|++.-
T Consensus 419 tFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 419 TFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred eecccHHHHHHHhhheEEEeccccceeeeeccee
Confidence 99999999999976433333 3577777664
No 122
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.70 E-value=1.1e-07 Score=71.74 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=63.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC--CCCCceEEEEEeCCHHHHHHHHHh-CCCccC---CeEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS--DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG---SRYIE 179 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~--~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~---gr~i~ 179 (196)
.-++|||.+||-++...+|..+|..|---+ ...|..-. ..-.+-+|||+|.+..+|.+|+.. ||..++ +..|+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYE-gslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYE-GSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCcc-ceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 458999999999999999999999985444 34444332 223557999999999999999976 999986 89999
Q ss_pred EEECCh
Q 029263 180 LFPSSH 185 (196)
Q Consensus 180 V~~~~~ 185 (196)
+.+++.
T Consensus 112 iElAKS 117 (284)
T KOG1457|consen 112 IELAKS 117 (284)
T ss_pred eeehhc
Confidence 999854
No 123
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.67 E-value=4.6e-07 Score=60.52 Aligned_cols=82 Identities=12% Similarity=0.172 Sum_probs=66.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcC-CCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccC----CeEEEE
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG----SRYIEL 180 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~-g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~----gr~i~V 180 (196)
.+|.++|+|-..|.++|.+++... ...-+-+.|+.|. ++.+.|||||-|.+++.|.+-... +|..+. .+..+|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 379999999999999999999653 3333567888876 788999999999999999988876 998885 677888
Q ss_pred EECChHHHH
Q 029263 181 FPSSHEEMD 189 (196)
Q Consensus 181 ~~~~~~~~~ 189 (196)
.+|.-...+
T Consensus 82 ~yAriQG~~ 90 (97)
T PF04059_consen 82 SYARIQGKD 90 (97)
T ss_pred ehhHhhCHH
Confidence 888654333
No 124
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.66 E-value=4.8e-08 Score=81.73 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=57.5
Q ss_pred chHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 4 PQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
+||++|.++|++.|.|.++. +.|+ +|+++||||++|.+.++|..|+ .+|+..++||.++|....
T Consensus 30 ~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 30 GSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred ccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 68999999999999999985 4565 9999999999999999999999 579999999999996544
No 125
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=3.6e-07 Score=60.87 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=56.2
Q ss_pred chHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHH
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEY 71 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~ 71 (196)
-|.+++.++|.+||.|..|.+=. +..-+|.|||.|++-.||.+|+ ++++..+.++++.|........
T Consensus 30 ITseemydlFGkyg~IrQIRiG~-~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 30 ITSEEMYDLFGKYGTIRQIRIGN-TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDA 97 (124)
T ss_pred ccHHHHHHHhhcccceEEEEecC-ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHH
Confidence 47889999999999999997643 3345789999999999999999 6899999999999866655443
No 126
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.62 E-value=1.6e-06 Score=69.92 Aligned_cols=163 Identities=17% Similarity=0.227 Sum_probs=107.6
Q ss_pred hHHHHHHHhcccCcceeEEEe-cCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhccccC
Q 029263 5 QVQVLCTIHHQLMDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 82 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~-~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~~ 82 (196)
+-+-|-++|=-||.|..|.++ .+. |.|.|++.+....++|+ .+|+..+-|..+.|+.+...-.... ..-.-
T Consensus 301 N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~-~pflL-- 373 (494)
T KOG1456|consen 301 NCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPV-QPFLL-- 373 (494)
T ss_pred chhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccC-Cceec--
Confidence 346678888889999999655 444 58999999999999999 6888888888888877663321110 10000
Q ss_pred CCCCCC------CCCCCCCCCC--CCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEE
Q 029263 83 RGGSPH------RSIPRAKSHD--EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154 (196)
Q Consensus 83 ~~~~~~------~~~~~~~~~~--~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV 154 (196)
..+++. +..++-.... ....-...+.+|+.-|.|..+||+.+..+|...+....+|++..-++-++ --+.+
T Consensus 374 pDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserS-ssGll 452 (494)
T KOG1456|consen 374 PDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERS-SSGLL 452 (494)
T ss_pred CCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccccccc-cccee
Confidence 000000 0000000000 00112235678999999999999999999988775555677754443332 24899
Q ss_pred EeCCHHHHHHHHHh-CCCccCC
Q 029263 155 EFANAEDSKAAMAK-DRMTLGS 175 (196)
Q Consensus 155 ~F~~~~~A~~Al~~-~g~~l~g 175 (196)
+|++.++|..||.+ |-+.+.+
T Consensus 453 Efe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 453 EFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred eeehHHHHHHHHHHhccccccC
Confidence 99999999999976 8777654
No 127
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=1.8e-08 Score=75.56 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=70.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
+..++|||.||-..++++-|.++|-+.|.+. .|.|+.+.++..+ ||||.|.++.+..-|+++ ||..|.++.|+|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~-kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVY-KVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceE-EEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4568999999999999999999999999776 6888888888888 999999999999999998 999999999999875
Q ss_pred C
Q 029263 184 S 184 (196)
Q Consensus 184 ~ 184 (196)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 3
No 128
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=4.9e-08 Score=73.29 Aligned_cols=120 Identities=15% Similarity=0.120 Sum_probs=94.8
Q ss_pred CCchHHHHHHHhcccCcceeEEEec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
++.||+-|.++|-..|.|+.|.|.+ .+++.+ ||||.|+++-....|++ +|+..+.++++.+..-
T Consensus 19 ~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r------------- 84 (267)
T KOG4454|consen 19 SGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR------------- 84 (267)
T ss_pred hhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc-------------
Confidence 5678999999999988889997764 577777 99999999999999997 5888888888776321
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcC----CCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEE
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG----LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 155 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----Lp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~ 155 (196)
.++ |...++++.+...|+.-|.++ .+++..+.+|+++-++|++
T Consensus 85 --------------------------------~G~shapld~r~~~ei~~~v~s~a~p~~-~~R~~~~~d~rnrn~~~~~ 131 (267)
T KOG4454|consen 85 --------------------------------CGNSHAPLDERVTEEILYEVFSQAGPIE-GVRIPTDNDGRNRNFGFVT 131 (267)
T ss_pred --------------------------------cCCCcchhhhhcchhhheeeecccCCCC-CccccccccCCccCccchh
Confidence 222 455677888888888888665 6888888889999999998
Q ss_pred eCCHHHHHHHHHh
Q 029263 156 FANAEDSKAAMAK 168 (196)
Q Consensus 156 F~~~~~A~~Al~~ 168 (196)
+-..-..-.++..
T Consensus 132 ~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 132 YQRLCAVPFALDL 144 (267)
T ss_pred hhhhhcCcHHhhh
Confidence 8766555666644
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.9e-07 Score=74.68 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=55.3
Q ss_pred chHHHHHHHhcccCcceeE-EEec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEE
Q 029263 4 PQVQVLCTIHHQLMDIVDV-LFVH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEV 63 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v-~~~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v 63 (196)
.|++||.-+||.||.|+++ +|.| ++|-+--||||+|++.++++.|. +|++..++.+.|.|
T Consensus 251 TtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 251 TTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 5889999999999999987 4565 59999999999999999999998 89999999999998
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.42 E-value=1.7e-06 Score=73.34 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=67.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
..++-|.|.+|...+-..||+.+|++||-+. ..+++.+- +--.+.|+||++.+..+|.+||.. |.+.|.||.|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVv-GAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVV-GAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhccee-ceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3456799999999999999999999999665 55666543 333567999999999999999975 99999999999988
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
++-+
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 7543
No 131
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.37 E-value=4.2e-07 Score=72.86 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=70.3
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccc-------eEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccC
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED-------SIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG 174 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~-------~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~ 174 (196)
.....+|||.+||.++++++|.++|.+++++.- .|.|-++. |+.++|.|.|.|.++..|++|+.. ++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445678999999999999999999999985431 14444444 999999999999999999999976 999999
Q ss_pred CeEEEEEECChH
Q 029263 175 SRYIELFPSSHE 186 (196)
Q Consensus 175 gr~i~V~~~~~~ 186 (196)
|..|.|+++...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999988654
No 132
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.36 E-value=2.3e-06 Score=58.29 Aligned_cols=78 Identities=24% Similarity=0.417 Sum_probs=46.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh---C---CCccCCeEEEEE
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK---D---RMTLGSRYIELF 181 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~---~---g~~l~gr~i~V~ 181 (196)
.+|++.|++..++.++|++.|+.||.+. .|.+. .|.. .|+|.|.+++.|+.|+.. . +..+.+..+++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~-yVD~~---~G~~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVA-YVDFS---RGDT--EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EE-EEE-----TT-S--EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcc-eEEec---CCCC--EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4789999999999999999999999543 44443 3333 799999999999999953 4 568889999999
Q ss_pred ECChHHHHHH
Q 029263 182 PSSHEEMDEA 191 (196)
Q Consensus 182 ~~~~~~~~~~ 191 (196)
+-..++-..+
T Consensus 76 vLeGeeE~~Y 85 (105)
T PF08777_consen 76 VLEGEEEEEY 85 (105)
T ss_dssp ---HHHHHHH
T ss_pred ECCCHHHHHH
Confidence 8876655554
No 133
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=1.2e-06 Score=73.94 Aligned_cols=71 Identities=25% Similarity=0.417 Sum_probs=61.4
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 179 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~ 179 (196)
....++|+|-|||.++++++|..+|+.||.+. .|+... ..+|..||+|-+.-+|++|++. ++..+.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir-~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIR-EIRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchh-hhhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 44568999999999999999999999999776 366544 3567999999999999999976 99999998887
No 134
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.25 E-value=6.8e-06 Score=52.79 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=45.0
Q ss_pred EEEEcCCCCCCCHHH----HHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 109 ILRLRGLPFSAGKDD----IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~----l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
.|+|.|||-+.+... |++++..+|-.. +.+. .|.|+|.|.+++.|.+|... +|..+-|+.|.|+..
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV--l~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV--LSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--E--EE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEE--EEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 589999999998865 557777888533 2322 35899999999999999965 999999999999987
Q ss_pred C
Q 029263 184 S 184 (196)
Q Consensus 184 ~ 184 (196)
.
T Consensus 75 ~ 75 (90)
T PF11608_consen 75 P 75 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 135
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.22 E-value=8.8e-07 Score=67.99 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=50.7
Q ss_pred hHHHHHHHhcccCcceeE-EEec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHH
Q 029263 5 QVQVLCTIHHQLMDIVDV-LFVH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQE 70 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v-~~~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~ 70 (196)
|++-|-..|++|-..... .+.| .+|+++||+||-|.+..|+..|+ ++++.++|.++|+...+...+
T Consensus 203 nd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 203 NDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 445555666664444433 2344 59999999999999999999999 799999999999987766554
No 136
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.19 E-value=1.9e-06 Score=66.70 Aligned_cols=64 Identities=14% Similarity=0.030 Sum_probs=54.5
Q ss_pred chHHHHHHHhcccCcceeE-EEecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 4 PQVQVLCTIHHQLMDIVDV-LFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v-~~~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
.|-+++...|+.||.|..+ +.+|. .|+++|||||+|.+.+.+..|+++++..+.++.|.|....
T Consensus 113 ~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 113 VTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred cccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 3555699999999999876 34454 6789999999999999999999999999999999986544
No 137
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=2.1e-06 Score=65.29 Aligned_cols=69 Identities=23% Similarity=0.365 Sum_probs=59.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEECCh
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~~~ 185 (196)
.+||++||+.+.+.+|..||..||-+. .+.+. .||+||+|.+..+|.-|+. +|+..|.|-.+.|.++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~-d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIP-DADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccc-cceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 589999999999999999999999655 45444 3699999999999999996 499999888888888764
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.17 E-value=1.9e-06 Score=76.30 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=108.4
Q ss_pred chHHHHHHHhcccCcceeEEEecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
-|+.+|+..|..+|.+.+|.|..+ -+.-.-||||.|.+.+.+-.|. ++.+..++...+.+....
T Consensus 384 l~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~-------------- 449 (975)
T KOG0112|consen 384 LTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ-------------- 449 (975)
T ss_pred hhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc--------------
Confidence 478899999999999999876644 4555569999999999998887 667776654433321111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHH
Q 029263 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161 (196)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~ 161 (196)
.....+..+++++|+..+....+...|..||.+. .+....|.+ ||+|.|.++..
T Consensus 450 --------------------~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir----~Idy~hgq~--yayi~yes~~~ 503 (975)
T KOG0112|consen 450 --------------------PKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIR----IIDYRHGQP--YAYIQYESPPA 503 (975)
T ss_pred --------------------cccccceeeccCCCCCCChHHHHHHHhhccCcce----eeecccCCc--ceeeecccCcc
Confidence 0122456799999999999999999999999754 333444555 99999999999
Q ss_pred HHHHHHh-CCCccCC--eEEEEEECCh
Q 029263 162 SKAAMAK-DRMTLGS--RYIELFPSSH 185 (196)
Q Consensus 162 A~~Al~~-~g~~l~g--r~i~V~~~~~ 185 (196)
|+.|+.- -|.-|+| +.|.|.++..
T Consensus 504 aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 504 AQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred chhhHHHHhcCcCCCCCcccccccccC
Confidence 9999964 8888875 7899998854
No 139
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.16 E-value=4.3e-06 Score=73.08 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=53.1
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
+.+|+||.++|+.||+|.+|++.. ++|||||.+....+|.+|| ++.+..+.++.|+|..+.
T Consensus 432 ~v~e~dL~~~feefGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 432 NVTEQDLANLFEEFGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred hhhHHHHHHHHHhcccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 468999999999999999997653 5679999999999999999 578888999999886554
No 140
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=5.9e-08 Score=85.05 Aligned_cols=150 Identities=15% Similarity=0.087 Sum_probs=108.7
Q ss_pred HHHHHHhcccCcceeEEEec-CCCcccc-eEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhccccCCC
Q 029263 7 QVLCTIHHQLMDIVDVLFVH-KNNKFTG-EAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 84 (196)
Q Consensus 7 ~dl~~~F~~~g~i~~v~~~~-~~g~~~G-~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 84 (196)
+..+..|.+++.|..|.+.+ ....+.+ +++++++...+++.|....+.-++++...|....+.+.....
T Consensus 587 e~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~--------- 657 (881)
T KOG0128|consen 587 EIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENF--------- 657 (881)
T ss_pred HhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCchhhhhcc---------
Confidence 36678899988888886654 3333333 899999999999999988888888887777555543310000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEE-eCCCCCCceEEEEEeCCHHHHH
Q 029263 85 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT-MNSDGRPTGEAFVEFANAEDSK 163 (196)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~-~~~~g~~~G~afV~F~~~~~A~ 163 (196)
...+.......++|++||++.+.+.+|...|.++|.+. .+++. .-.+++.+|.|+|.|..++++.
T Consensus 658 -------------kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e-~vqi~~h~n~~~~rG~~Y~~F~~~~~~~ 723 (881)
T KOG0128|consen 658 -------------KVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIE-VVQIVIHKNEKRFRGKAYVEFLKPEHAG 723 (881)
T ss_pred -------------CcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhh-hHHHHHHhhccccccceeeEeecCCchh
Confidence 00001112345799999999999999999999999766 55554 3347889999999999999999
Q ss_pred HHHHh-CCCccCCeEEE
Q 029263 164 AAMAK-DRMTLGSRYIE 179 (196)
Q Consensus 164 ~Al~~-~g~~l~gr~i~ 179 (196)
+|+.. +++.++...+.
T Consensus 724 aaV~f~d~~~~gK~~v~ 740 (881)
T KOG0128|consen 724 AAVAFRDSCFFGKISVA 740 (881)
T ss_pred hhhhhhhhhhhhhhhhh
Confidence 99987 66666643333
No 141
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.14 E-value=6.6e-06 Score=63.84 Aligned_cols=69 Identities=10% Similarity=-0.005 Sum_probs=59.3
Q ss_pred CCchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHH
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQE 70 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~ 70 (196)
.+.+++||+++|..|+++..+. -++++|++.|.|=|.|...+||..|+ +.++..++|++|.+.......
T Consensus 93 ~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 93 YGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred cCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 3567899999999988777774 47899999999999999999999999 578999999999987665443
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.11 E-value=1.5e-05 Score=69.18 Aligned_cols=79 Identities=20% Similarity=0.195 Sum_probs=66.5
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEE--eCC--CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT--MNS--DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 179 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~--~~~--~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~ 179 (196)
+.+.-|||.||++.++++.|...|+.||.+. +|+++ +.. ..+.+-+|||-|-+..||++|+.. +|..+.++.+.
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPla-svKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLA-SVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCccc-ceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3456799999999999999999999999665 66654 332 455667999999999999999975 99999999999
Q ss_pred EEECC
Q 029263 180 LFPSS 184 (196)
Q Consensus 180 V~~~~ 184 (196)
+.++.
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 98874
No 143
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.10 E-value=7.9e-06 Score=65.38 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=51.4
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHh--cccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR--NRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~--~~~~l~~~~i~v~~~~ 67 (196)
.-+|+||+++|-+||+|..+.+... +|+|||+|.+++.|+.|.+. +...+.|+.|.|....
T Consensus 239 ~v~e~dIrdhFyqyGeirsi~~~~~----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 239 EVLEQDIRDHFYQYGEIRSIRILPR----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred chhHHHHHHHHhhcCCeeeEEeecc----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 4589999999999999999876643 35999999999999999954 7778899999997544
No 144
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.99 E-value=2.8e-05 Score=52.28 Aligned_cols=77 Identities=12% Similarity=0.217 Sum_probs=51.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeC-------CCCCCceEEEEEeCCHHHHHHHHHhCCCccCCe-EE
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-------SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR-YI 178 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~-------~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr-~i 178 (196)
...|.|-|.|+. ....|.+.|+.||.+.+...+..+ +.-.....-.|+|.++.+|.+||+.||..++|. .+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 457999999988 667788999999965533312111 111123478899999999999999999999885 55
Q ss_pred EEEECC
Q 029263 179 ELFPSS 184 (196)
Q Consensus 179 ~V~~~~ 184 (196)
-|.+.+
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 576663
No 145
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.92 E-value=1.8e-05 Score=67.28 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=54.0
Q ss_pred hHHHHHHHhcccCcceeEEEe-c-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChH
Q 029263 5 QVQVLCTIHHQLMDIVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~-~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~ 69 (196)
--.||+++|++||.|+-..++ + .+-..+.|+||.+.+.++|.++| .++.+.|-|+.|.|..+...
T Consensus 418 RAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 418 RATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred hhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 357999999999999986433 2 34446789999999999999999 68999999999999877644
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.79 E-value=4.5e-05 Score=63.77 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=54.2
Q ss_pred CchHHHHHHHhcccCcceeE--EEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDV--LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v--~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
.+|+.+|+++|..||.|... ....+.+++.+||||+|.+.+++..||+.+-..++++.+.|....
T Consensus 299 da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 299 DATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred CCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 46788999999999999885 334445666699999999999999999999889999998886543
No 147
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.78 E-value=0.00013 Score=49.13 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=44.8
Q ss_pred HHHHHHHhcccCcceeEE--E---------ecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEE-EEEcC
Q 029263 6 VQVLCTIHHQLMDIVDVL--F---------VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVE-VFRSK 67 (196)
Q Consensus 6 e~dl~~~F~~~g~i~~v~--~---------~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~-v~~~~ 67 (196)
...|.+.|++||+|++.. . ..+.|. .+-.|.|+++.+|.+||.+||..++|..|- |.++.
T Consensus 19 ~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~--NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 19 SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG--NWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp HHHHHHHHHCCS-EECEEGGG----------E-CCT--TEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-H
T ss_pred HHHHHHHHHhcceEEEeecccccccccccccCCCCC--CEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEcH
Confidence 457889999999999864 1 112333 389999999999999999999999987755 55553
No 148
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.53 E-value=0.00017 Score=42.72 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=33.3
Q ss_pred hHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH
Q 029263 5 QVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL 49 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al 49 (196)
..++|..+|+.||+|+++.+.. ..-+.||.|.++.+|++||
T Consensus 13 ~~~~vl~~F~~fGeI~~~~~~~----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 13 LAEEVLEHFASFGEIVDIYVPE----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHHHhcCCEEEEEcCC----CCcEEEEEECCHHHHHhhC
Confidence 3467888999999999976552 1238999999999999996
No 149
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.51 E-value=0.00042 Score=49.50 Aligned_cols=57 Identities=12% Similarity=0.256 Sum_probs=43.7
Q ss_pred HHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECChHH
Q 029263 123 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 187 (196)
Q Consensus 123 ~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~~~~ 187 (196)
+|.+.|..||.+. -|++.. +.=.|+|.+-.+|-+|+.++|..++|+.|+|++.++.-
T Consensus 52 ~ll~~~~~~Gevv-LvRfv~-------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVV-LVRFVG-------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-EC-EEEEET-------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceE-EEEEeC-------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccH
Confidence 6778888999644 455553 25899999999999999999999999999999997653
No 150
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.49 E-value=0.00049 Score=55.27 Aligned_cols=85 Identities=14% Similarity=0.347 Sum_probs=62.7
Q ss_pred ccEEEEcCCCCCCCHHHH------HHHhhcCCCccceEEEEeCC-----CCCCceEEEEEeCCHHHHHHHHHh-CCCccC
Q 029263 107 TGILRLRGLPFSAGKDDI------MDFFKDFVLSEDSIHITMNS-----DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG 174 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l------~~~F~~~g~~~~~v~l~~~~-----~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~ 174 (196)
..-+||-+||+.+..++. .++|++||-+. .|.+-+.- +..+-| .||+|.+.+||.+|+.. +|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~-KIvvNkkt~s~nst~~h~g-vYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIK-KIVVNKKTSSLNSTASHAG-VYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhcccee-EEEecccccccccccccce-EEEEecchHHHHHHHHHhcccccc
Confidence 457899999998777762 38999999654 23332111 122222 49999999999999987 999999
Q ss_pred CeEEEEEECChHHHHHHHH
Q 029263 175 SRYIELFPSSHEEMDEALS 193 (196)
Q Consensus 175 gr~i~V~~~~~~~~~~~~~ 193 (196)
||.|+.++.+.+=--.++|
T Consensus 192 Gr~lkatYGTTKYCtsYLR 210 (480)
T COG5175 192 GRVLKATYGTTKYCTSYLR 210 (480)
T ss_pred CceEeeecCchHHHHHHHc
Confidence 9999999998775555554
No 151
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.48 E-value=0.00012 Score=58.87 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=63.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCcc-ceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSE-DSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~-~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
..|+||+||-+.+|++||.+.+...|+.. -.+++..+. +|+++|||+|...+....++-|.. ..+.|.|+.=.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 46899999999999999999998888432 013443333 899999999999999888999986 888999988777766
Q ss_pred Ch
Q 029263 184 SH 185 (196)
Q Consensus 184 ~~ 185 (196)
.+
T Consensus 160 NK 161 (498)
T KOG4849|consen 160 NK 161 (498)
T ss_pred ch
Confidence 54
No 152
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.46 E-value=0.00049 Score=53.21 Aligned_cols=73 Identities=26% Similarity=0.312 Sum_probs=59.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-h-CCC---ccCCeEEEEE
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-K-DRM---TLGSRYIELF 181 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~-~g~---~l~gr~i~V~ 181 (196)
..|+|.||+.-+..+.+.+-|+.||.++ ...++.|..|++.|.++|.|.....|..|+. + ++. ...+++.-|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e-~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIE-RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccc-hheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 4699999999999999999999999887 5556677789999999999999999998885 4 333 3345555543
No 153
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0012 Score=55.69 Aligned_cols=61 Identities=16% Similarity=0.305 Sum_probs=49.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC----CCCCce---EEEEEeCCHHHHHHHHH
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS----DGRPTG---EAFVEFANAEDSKAAMA 167 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~----~g~~~G---~afV~F~~~~~A~~Al~ 167 (196)
.....|||++||++++|+.|...|..||.+. |.|+... .-.++| |+|+.|+++.+....+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~--VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK--VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE--eecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 3457899999999999999999999999765 7787432 222566 99999999888877664
No 154
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.00068 Score=53.63 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=51.7
Q ss_pred HHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCee-EEEEEcChHHHHH
Q 029263 8 VLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRY-VEVFRSKRQEYYK 73 (196)
Q Consensus 8 dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~-i~v~~~~~~~~~~ 73 (196)
-|...|+.||+|+++... .+|+ +-+|.|.++.+|.+||.+|+..|++.. |.|.+|.......
T Consensus 212 ~vL~~F~~cG~Vvkhv~~-~ngN---wMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDksvi~ 274 (350)
T KOG4285|consen 212 IVLNLFSRCGEVVKHVTP-SNGN---WMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKSVIN 274 (350)
T ss_pred HHHHHHHhhCeeeeeecC-CCCc---eEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHHHhc
Confidence 467899999999998744 4554 899999999999999999999998865 6789988766544
No 155
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.21 E-value=0.00088 Score=39.66 Aligned_cols=52 Identities=15% Similarity=0.389 Sum_probs=38.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHH
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al 166 (196)
..|-|.|.|+...+ .+..+|..||.+. .+.+. ...-..+|.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~-~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIV-DIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEE-EEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 46889998877664 4556888999765 44444 22337999999999999985
No 156
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.00095 Score=56.98 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=62.3
Q ss_pred cccEEEEcCCCCCCC------HHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccC-CeE
Q 029263 106 HTGILRLRGLPFSAG------KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLG-SRY 177 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t------~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~-gr~ 177 (196)
...+|+|-|+|---. ..-|.++|+.+|-+. ...++.++.|..+|+.|++|++..+|+.|+.. ||+.|. +-.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~v-n~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIV-NMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhcccc-ceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 346899999985322 234668999999554 67888888888999999999999999999965 998885 444
Q ss_pred EEEEECChHHHHHHH
Q 029263 178 IELFPSSHEEMDEAL 192 (196)
Q Consensus 178 i~V~~~~~~~~~~~~ 192 (196)
..|. +-.++++++
T Consensus 136 f~v~--~f~d~eky~ 148 (698)
T KOG2314|consen 136 FFVR--LFKDFEKYE 148 (698)
T ss_pred EEee--hhhhHHHhc
Confidence 4443 345555554
No 157
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.06 E-value=0.0047 Score=37.65 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=43.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcC--CCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 167 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~--g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~ 167 (196)
..|+|+|+ .+.+.+||+.+|..| ......|.|+.|.. |=|.|.+.+.|.+||.
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS------cNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDTS------CNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCCc------EEEEECCHHHHHHHHH
Confidence 47999999 668889999999998 12223689997753 8899999999999985
No 158
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.06 E-value=0.0014 Score=53.60 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=60.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCC----CCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD----GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~----g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
..|.|.||.+++|.++++.+|+..|-++ .+.|..... .-..-.|||.|.+...+..|--+..+.+-++.|.|-++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~-elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIP-ELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccc-cccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 4899999999999999999999999665 466543221 12345899999999999999888667777888888776
Q ss_pred C
Q 029263 184 S 184 (196)
Q Consensus 184 ~ 184 (196)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 159
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.02 E-value=0.00031 Score=57.31 Aligned_cols=177 Identities=12% Similarity=-0.014 Sum_probs=109.9
Q ss_pred CchHHHHHHHhcccCcceeEEEec-----CCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcCh--HHHH---
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVH-----KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR--QEYY--- 72 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~-----~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~--~~~~--- 72 (196)
.+|.+++.++|.-.|+|.++.++- .---..-.|||.|.+...+..|-.+-++.+-++.+.|.+... .++.
T Consensus 18 sat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af 97 (479)
T KOG4676|consen 18 SATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAF 97 (479)
T ss_pred hhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHH
Confidence 468899999999889998874431 111234589999999999999999988888888777755432 1221
Q ss_pred HHHhhccccCCCCCCCCCCCCC--------------CCCCCCC-----CCCCcccEEEEcCCCCCCCHHHHHHHhhcCCC
Q 029263 73 KAIANEVSDVRGGSPHRSIPRA--------------KSHDEGK-----DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 133 (196)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~-----~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~ 133 (196)
..++....-.+.-++..-.+.. ..+..+. ....-..+++|.+|+-.+...++.+.|..+|.
T Consensus 98 ~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Ge 177 (479)
T KOG4676|consen 98 VELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGE 177 (479)
T ss_pred HhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcch
Confidence 2222221111111111000000 0000000 01112367999999999999999999999986
Q ss_pred ccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 134 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 134 ~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
+. ..++- .|...-++-|.|....+...|+..+|..+.-+-..+.+.
T Consensus 178 v~-ya~~a---sk~~s~~c~~sf~~qts~~halr~~gre~k~qhsr~ai~ 223 (479)
T KOG4676|consen 178 VS-YAHTA---SKSRSSSCSHSFRKQTSSKHALRSHGRERKRQHSRRAII 223 (479)
T ss_pred hh-hhhhh---ccCCCcchhhhHhhhhhHHHHHHhcchhhhhhhhhhhhc
Confidence 54 33332 344445677999999999999998887765433333333
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.00085 Score=57.27 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=45.0
Q ss_pred HHHHHhcccCcceeEEE-ecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCe
Q 029263 8 VLCTIHHQLMDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRR 59 (196)
Q Consensus 8 dl~~~F~~~g~i~~v~~-~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~ 59 (196)
-|..+|+++|+|+.+.+ .+..|..+|+.|++|.+..+|..|+ .+||..|+.+
T Consensus 80 vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 80 VLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred HHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 46789999999999754 4888889999999999999999999 5799988754
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.98 E-value=0.0013 Score=54.43 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=52.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeC---C---CCCC--------ceEEEEEeCCHHHHHHHHHh
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN---S---DGRP--------TGEAFVEFANAEDSKAAMAK 168 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~---~---~g~~--------~G~afV~F~~~~~A~~Al~~ 168 (196)
-..++|.+.|||.+-.-+.|.++|+.+|.+. +|+|+.- + .|.+ +-+|+|+|...+.|.+|..+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~Ik-sIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIK-SIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhccccee-eeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 3568999999999988899999999999876 8998765 2 3333 34799999999999999876
No 162
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.97 E-value=0.0017 Score=51.25 Aligned_cols=59 Identities=12% Similarity=0.009 Sum_probs=45.8
Q ss_pred hHHHHHHHhcccCcceeEEEe-cCCC--cccceEEEEeCCHHHHHHHH-HhcccccCCeeEEE
Q 029263 5 QVQVLCTIHHQLMDIVDVLFV-HKNN--KFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEV 63 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~-~~~g--~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v 63 (196)
-|+++++-+++||.|..|+|. .++. .-.---||+|+..++|.+|+ .+||.++|||.+.-
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 367889999999999998644 3211 11123699999999999999 79999999998654
No 163
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.86 E-value=0.0012 Score=51.04 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=56.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-C--------CCCce----EEEEEeCCHHHHHHHHH-hCCC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D--------GRPTG----EAFVEFANAEDSKAAMA-KDRM 171 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~--------g~~~G----~afV~F~~~~~A~~Al~-~~g~ 171 (196)
....||++++|+..+..-|+++|+.||.+- .|.|.... . |.+.+ .|.|+|.+...|++... +|+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVG-RvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVG-RVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccc-eEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 457999999999999999999999999765 77775443 2 33333 46699999999987775 4999
Q ss_pred ccCCeE
Q 029263 172 TLGSRY 177 (196)
Q Consensus 172 ~l~gr~ 177 (196)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999975
No 164
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.84 E-value=0.00072 Score=52.33 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=52.3
Q ss_pred HHHHHHhh-cCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECChHHHHHH
Q 029263 122 DDIMDFFK-DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEA 191 (196)
Q Consensus 122 ~~l~~~F~-~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~~~~~~ 191 (196)
+|+...|+ +||.++ .+.+..+---...|-++|.|...++|++|+.. |+..+.|++|...++-...+.++
T Consensus 83 Ed~f~E~~~kygEie-e~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea 153 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIE-ELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREA 153 (260)
T ss_pred HHHHHHHHHHhhhhh-hhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhh
Confidence 45555555 788665 44444433334678899999999999999976 99999999999999876666654
No 165
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.76 E-value=0.0047 Score=39.78 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=39.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~ 168 (196)
..+|. .|...-..||.++|++||-+. |.++.|. -|||...+.+.|..|+..
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~--VsWi~dT------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY--VSWINDT------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE--EEEECTT------EEEEEECCCHHHHHHHHH
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE--EEEEcCC------cEEEEeecHHHHHHHHHH
Confidence 44555 999999999999999999865 8888653 499999999999998865
No 166
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.67 E-value=0.0097 Score=40.46 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=33.7
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHh---c---ccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR---N---RQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~---~---~~~l~~~~i~v~~~~ 67 (196)
..|-++|++.|+.|+.|.-|.+.. |. ..|||.|.+.++|++|++. . +..+.+..+.+....
T Consensus 12 ~~~re~iK~~f~~~g~V~yVD~~~--G~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 12 PTSREDIKEAFSQFGEVAYVDFSR--GD--TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp S--HHHHHHHT-SS--EEEEE--T--T---SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---
T ss_pred CcCHHHHHHHHHhcCCcceEEecC--CC--CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECC
Confidence 456889999999988666554433 32 2799999999999999953 2 335667666665544
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.63 E-value=0.0094 Score=42.66 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=44.9
Q ss_pred HHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHH
Q 029263 8 VLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75 (196)
Q Consensus 8 dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~ 75 (196)
+|-+.|+.||+++=|.+.. +.-+|.|.+-+.|-+||.+++..++|+.+.|...++ +|....
T Consensus 52 ~ll~~~~~~GevvLvRfv~------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp-dW~~~l 112 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP-DWLKGL 112 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----------
T ss_pred HHHHHHHhCCceEEEEEeC------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc-cHHHHH
Confidence 6788899999887776654 358999999999999999999999999999987663 343333
No 168
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.59 E-value=0.0053 Score=49.48 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=44.8
Q ss_pred HHHhcccCcceeEEEecCC---Ccccce--EEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcCh
Q 029263 10 CTIHHQLMDIVDVLFVHKN---NKFTGE--AFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKR 68 (196)
Q Consensus 10 ~~~F~~~g~i~~v~~~~~~---g~~~G~--afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~ 68 (196)
.++|..||.|..|.+..++ ....+- .||.|.+.|||.+|| +-++..++||.++....+.
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTT 202 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTT 202 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCch
Confidence 4799999999998654322 111122 499999999999999 6799999999988765553
No 169
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.27 E-value=0.0029 Score=53.93 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=45.6
Q ss_pred chHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEE
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVE 62 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~ 62 (196)
-|+++|..+|+.||+|..|. .+-..+|..||+|-+.-+|+.|+ +++++.+.++.|.
T Consensus 87 Vsn~~L~~~f~~yGeir~ir---~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 87 VSNDTLLRIFGAYGEIREIR---ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CCHHHHHHHHHhhcchhhhh---cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 47899999999999999964 22345678999999999999999 5788877766555
No 170
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.26 E-value=0.016 Score=37.50 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=32.8
Q ss_pred HHHHhcccC-cceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 9 LCTIHHQLM-DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 9 l~~~F~~~g-~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
|+.++.-|| .|.+|. | |.|+|.|.+.+.|++|.+ +++...-|+.|.|.-..
T Consensus 23 L~qLsdNCGGkVl~v~-----~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 23 LRQLSDNCGGKVLSVS-----G---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHHHTTT--EEE-------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred HHHHhhccCCEEEEEe-----C---CEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 566666775 444432 2 589999999999999995 78888888888885543
No 171
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.18 E-value=0.0026 Score=50.98 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=53.5
Q ss_pred CCchHHHHHHHhcccCcceeEEEe--cCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEc
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~~~--~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~ 66 (196)
...|+++|+.+|..|+.|..+.+. ..+|.++|+|||.|.+..++..|+......++++++.+...
T Consensus 195 f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 195 FSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEED 261 (285)
T ss_pred cccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccC
Confidence 346899999999999999998654 35999999999999999999999966566677787777443
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.87 E-value=0.0052 Score=47.66 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=47.0
Q ss_pred HHHHHHhc-ccCcceeEEEec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 7 QVLCTIHH-QLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 7 ~dl~~~F~-~~g~i~~v~~~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
+||-..|+ +||+|.++.+.+ .--+-.|-+||.|...++|++|+ .+|+..+.|++|....+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 56666666 789998874443 23345788999999999999999 579999999998764443
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.84 E-value=0.028 Score=48.63 Aligned_cols=82 Identities=10% Similarity=0.107 Sum_probs=66.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhh-cCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCcc---CCeEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFK-DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL---GSRYIE 179 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~-~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l---~gr~i~ 179 (196)
..+..|+|.||-.-.|.-+|+.++. ..|++++. |+. +-+..|||.|.+.++|.+-... ||..+ +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 4467999999999999999999998 55666633 442 2344699999999999888854 88876 689999
Q ss_pred EEECChHHHHHHH
Q 029263 180 LFPSSHEEMDEAL 192 (196)
Q Consensus 180 V~~~~~~~~~~~~ 192 (196)
+.+....++.++.
T Consensus 516 adf~~~deld~hr 528 (718)
T KOG2416|consen 516 ADFVRADELDKHR 528 (718)
T ss_pred eeecchhHHHHHh
Confidence 9999999998774
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.65 E-value=0.058 Score=42.86 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=55.3
Q ss_pred EEEcCC--CCCCC---HHHHHHHhhcCCCccceEEEEeCCCCCC---ceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEE
Q 029263 110 LRLRGL--PFSAG---KDDIMDFFKDFVLSEDSIHITMNSDGRP---TGEAFVEFANAEDSKAAMA-KDRMTLGSRYIEL 180 (196)
Q Consensus 110 l~v~nL--p~~~t---~~~l~~~F~~~g~~~~~v~l~~~~~g~~---~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V 180 (196)
|.++|+ +-.++ ++++++..++||.+. .|.|...+ +.+ .---||+|...++|.+|+- +||..+|||.+.-
T Consensus 284 lllrnmVg~gevd~elede~keEceKyg~V~-~viifeip-~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 284 LLLRNMVGAGEVDEELEDETKEECEKYGKVG-NVIIFEIP-SQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHhhhhcCcccccHHHHHHHHHHHHhhccee-eEEEEecC-CCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 445554 23333 357888899999665 45444333 111 2247999999999999995 5999999999998
Q ss_pred EECChHHHHH
Q 029263 181 FPSSHEEMDE 190 (196)
Q Consensus 181 ~~~~~~~~~~ 190 (196)
.+...+.+..
T Consensus 362 ~Fyn~ekfs~ 371 (378)
T KOG1996|consen 362 CFYNLEKFSN 371 (378)
T ss_pred eeccHHhhhh
Confidence 8887776653
No 175
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.61 E-value=0.011 Score=47.96 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=55.6
Q ss_pred CCchHHHHHHHhcccCccee--------EEEe-c-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChH
Q 029263 2 ELPQVQVLCTIHHQLMDIVD--------VLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~--------v~~~-~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~ 69 (196)
+..|+++|.++|..|+.|-. |.++ + .|+..+|-|.|.|.+...|+.|+. .++..+.++.|+|..+...
T Consensus 76 d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 76 DSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERR 154 (351)
T ss_pred ccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhc
Confidence 46789999999999776631 3233 3 599999999999999999999996 6888898999999776644
No 176
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.55 E-value=0.033 Score=44.36 Aligned_cols=80 Identities=9% Similarity=0.142 Sum_probs=60.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCC-eEEEEEECCh
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS-RYIELFPSSH 185 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~g-r~i~V~~~~~ 185 (196)
...|-|.++|+..+ .-|..+|+.||.+. ..+. ++.-.+=+|.|.+..+|.+||.+||+.|+| -.|-|..++.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vv---khv~---~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVV---KHVT---PSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeee---eeec---CCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 45688889987654 45778899999764 2222 233348899999999999999999999976 5677888887
Q ss_pred HHHHHHHH
Q 029263 186 EEMDEALS 193 (196)
Q Consensus 186 ~~~~~~~~ 193 (196)
+.+....+
T Consensus 270 ksvi~~sn 277 (350)
T KOG4285|consen 270 KSVINGSN 277 (350)
T ss_pred HHHhcccc
Confidence 77766554
No 177
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.45 E-value=0.13 Score=34.39 Aligned_cols=53 Identities=21% Similarity=0.112 Sum_probs=37.3
Q ss_pred hHHHHHHHhccc-Cccee-E-EEec-CCCcccceEEEEeCCHHHHHHHH-HhcccccC
Q 029263 5 QVQVLCTIHHQL-MDIVD-V-LFVH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMG 57 (196)
Q Consensus 5 te~dl~~~F~~~-g~i~~-v-~~~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~ 57 (196)
|.++|.+++... .+-.| + +..| .++.+.|||||-|.+++.|.+-. ..+|....
T Consensus 14 t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 14 TQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred CHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 567777777552 22233 3 3345 58899999999999999999877 45666654
No 178
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.38 E-value=0.12 Score=31.89 Aligned_cols=54 Identities=9% Similarity=0.275 Sum_probs=44.3
Q ss_pred CCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 029263 118 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 180 (196)
Q Consensus 118 ~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V 180 (196)
.++-++++.-+..|+-. ++..+++| =||.|.+..+|+++... ||+.+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~----~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD----RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc----eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999863 45567676 78999999999999976 999888877654
No 179
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.20 E-value=0.0044 Score=51.34 Aligned_cols=142 Identities=14% Similarity=0.144 Sum_probs=100.0
Q ss_pred CchHHHHHHHhcccCcce-eEEEecCCCcccceEEEEeCCHHHHHHHHHh-ccc-ccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIV-DVLFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQ-NMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~-~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~-~~~-~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..|..||..+|.. ..+- +--++- ..|||||...+..-|.+|++. +++ .+-|..+++...-+..
T Consensus 12 ~~~psdl~svfg~-ak~~~~g~fl~----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk--------- 77 (584)
T KOG2193|consen 12 QVTPSDLESVFGD-AKIPGSGQFLV----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK--------- 77 (584)
T ss_pred CCChHHHHHHhcc-ccCCCCcceee----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH---------
Confidence 4577899999987 4332 211121 237999999999999999964 444 4667777774333211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEE-eCCCCCCceEEEEEeCC
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT-MNSDGRPTGEAFVEFAN 158 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~-~~~~g~~~G~afV~F~~ 158 (196)
...+.+-++|+|+...++-+..+...||.++ ++..+ .+.. .-.-=|+|.+
T Consensus 78 -------------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve-~~eqvnt~~e---tavvnvty~~ 128 (584)
T KOG2193|consen 78 -------------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVE-NCEQVNTDSE---TAVVNVTYSA 128 (584)
T ss_pred -------------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHh-HhhhhccchH---HHHHHHHHHH
Confidence 1234478999999999999999999999887 44332 3321 1123368888
Q ss_pred HHHHHHHHHh-CCCccCCeEEEEEECChHH
Q 029263 159 AEDSKAAMAK-DRMTLGSRYIELFPSSHEE 187 (196)
Q Consensus 159 ~~~A~~Al~~-~g~~l~gr~i~V~~~~~~~ 187 (196)
.+.+..|+.. +|..|.+.-+.|.+.-.++
T Consensus 129 ~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 129 QQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred HHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 9999999976 9999999999998874443
No 180
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.20 E-value=0.044 Score=45.65 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=58.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CC-CccCCeEEEEEECChH
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DR-MTLGSRYIELFPSSHE 186 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g-~~l~gr~i~V~~~~~~ 186 (196)
.+|+.||.+.++..|+..+|....+....-.|+ ..|||||.+.+..-|.+|+.. +| ..+.|.++.|..+-++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 589999999999999999998765433122233 247999999999999999975 54 5889999999877655
Q ss_pred HHH
Q 029263 187 EMD 189 (196)
Q Consensus 187 ~~~ 189 (196)
..+
T Consensus 77 kqr 79 (584)
T KOG2193|consen 77 KQR 79 (584)
T ss_pred HHH
Confidence 443
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.16 E-value=0.094 Score=37.39 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=51.1
Q ss_pred cEEEEc----CCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 108 GILRLR----GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 108 ~~l~v~----nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
.+|.|+ |+.+.-+-..+...++.||.+. +|.+.- +..|.|.|++..+|..|++.=.....|+.++.++-
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~-SVT~cG------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsWq 159 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQ-SVTLCG------RQSAVVVFKDITSACKAVSAFQSRAPGTMFQCSWQ 159 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcc-eeeecC------CceEEEEehhhHHHHHHHHhhcCCCCCceEEeecc
Confidence 356664 5555555566777788999876 887763 33699999999999999987444677888877664
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.15 E-value=0.41 Score=32.78 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=48.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCC
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS 175 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~g 175 (196)
...+.+...|+..+-++|..+.+.+-.....++++++... ++=.++++|.+.++|..=... ||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3455556666777777887666776533336888877542 555789999999999887766 9988763
No 183
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.14 E-value=0.012 Score=49.34 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=54.7
Q ss_pred CCchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcCh
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 68 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~ 68 (196)
++.|-.+|..+|..||+|.++.+.+. .--|.|.|.+..+|-+|-.-++..|++|.|+|+....
T Consensus 383 glnt~a~ln~hfA~fG~i~n~qv~~~----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 383 GLNTIADLNPHFAQFGEIENIQVDYS----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred CCchHhhhhhhhhhcCccccccccCc----hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 57889999999999999999876544 2259999999999999998999999999999987763
No 184
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.63 E-value=0.008 Score=54.09 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=62.7
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 103 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
+...+.+||++||+..+++.+|+..|..+|.++ .|.|..-.-+.-.-||||.|-+...+-+|... .+..|+.-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve-~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVE-EVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhcccc-ccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 345578999999999999999999999999776 67776554444556999999999988888854 7777766565555
Q ss_pred EC
Q 029263 182 PS 183 (196)
Q Consensus 182 ~~ 183 (196)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 54
No 185
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.22 E-value=0.027 Score=47.39 Aligned_cols=71 Identities=28% Similarity=0.374 Sum_probs=55.5
Q ss_pred EEEEcCCCCCC-CHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECCh
Q 029263 109 ILRLRGLPFSA-GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 109 ~l~v~nLp~~~-t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~~ 185 (196)
.+-+.-.|+.. |-.+|-..|.+||.++ .|.+-+.. --|.|+|.+..+|-.|-..++..|+||.|.|.|.++
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~-n~qv~~~~-----~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIE-NIQVDYSS-----LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccc-cccccCch-----hhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 34455555554 4479999999999776 66654432 249999999999988888899999999999999765
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.20 E-value=0.15 Score=32.92 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=33.1
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 52 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~ 52 (196)
.|-..||.++|+.||.|.=-.|.| + -|||....++.|..|+...
T Consensus 19 eWK~~DI~qlFspfG~I~VsWi~d-T-----SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 19 EWKTSDIYQLFSPFGQIYVSWIND-T-----SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp T--HHHHHHHCCCCCCEEEEEECT-T-----EEEEEECCCHHHHHHHHHH
T ss_pred HhhhhhHHHHhccCCcEEEEEEcC-C-----cEEEEeecHHHHHHHHHHh
Confidence 466789999999988775444444 3 5999999999999988543
No 187
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.04 E-value=0.25 Score=32.40 Aligned_cols=72 Identities=14% Similarity=0.067 Sum_probs=45.9
Q ss_pred EEEEeCCHHHHHHHHHh--cccccCCeeEEEEEcChHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEE
Q 029263 35 AFCVLGYPLQVDFALQR--NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 112 (196)
Q Consensus 35 afV~F~~~~~a~~Al~~--~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 112 (196)
|.|.|....=|+.-+++ +.-.+++..+.|....-... . .... +-....+.++|.|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~------~---------------~~k~--qv~~~vs~rtVlv 57 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLG------H---------------LQKF--QVFSGVSKRTVLV 57 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecC------C---------------ceEE--EEEEcccCCEEEE
Confidence 78999999999999865 55566776665533320000 0 0000 0001234578999
Q ss_pred cCCCCCCCHHHHHHHhh
Q 029263 113 RGLPFSAGKDDIMDFFK 129 (196)
Q Consensus 113 ~nLp~~~t~~~l~~~F~ 129 (196)
.|||...++++|++..+
T Consensus 58 sgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 58 SGIPDVLDEEELRDKLE 74 (88)
T ss_pred eCCCCCCChhhheeeEE
Confidence 99999999999987654
No 188
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=92.54 E-value=0.2 Score=44.52 Aligned_cols=61 Identities=8% Similarity=0.010 Sum_probs=48.8
Q ss_pred hHHHHHHHhcccCcceeEEEe--c---CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEE
Q 029263 5 QVQVLCTIHHQLMDIVDVLFV--H---KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFR 65 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~--~---~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~ 65 (196)
+|+.|..-|..||.+..|.|+ . ...+.+-||||-|-+..||++|+ .+++..+.++.+++..
T Consensus 187 ~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 187 DENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred cHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 688999999999999887544 1 13445569999999999999999 5789888888777643
No 189
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.46 E-value=0.62 Score=28.39 Aligned_cols=44 Identities=7% Similarity=0.015 Sum_probs=32.6
Q ss_pred CCchHHHHHHHhcccC---cceeEEEecCCCcccceEEEEeCCHHHHHHHHH
Q 029263 2 ELPQVQVLCTIHHQLM---DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ 50 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g---~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~ 50 (196)
+.-+.+||+.+|..|. .+..|-..|.+ -|=|.|.+.+.|.+||.
T Consensus 14 d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 14 DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred CCCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 3456779999999972 44567434333 38899999999999994
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.33 E-value=0.54 Score=40.71 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=47.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCcc-ceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh---CCCccCCeEEEE
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSE-DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK---DRMTLGSRYIEL 180 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~-~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~---~g~~l~gr~i~V 180 (196)
.+|.++-||.++-.++++.+|+.-.... .++.+-.+. -=||+|++..||+.|... .-+.|.|++|--
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4677899999999999999998633211 134433221 268999999999999853 456778877643
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.10 E-value=0.21 Score=37.17 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=40.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhc-CCCcc--ceEEEEeCC--C-CCCceEEEEEeCCHHHHHHHHHh-CCCcc
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKD-FVLSE--DSIHITMNS--D-GRPTGEAFVEFANAEDSKAAMAK-DRMTL 173 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~-~g~~~--~~v~l~~~~--~-g~~~G~afV~F~~~~~A~~Al~~-~g~~l 173 (196)
...|.|++||++.|++++.+.+++ ++... ..+.-.... . -..-.-|||.|.+.+++..-... +|..+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 458999999999999999997776 44321 123211222 1 11234799999999997776655 87654
No 192
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=91.80 E-value=0.15 Score=42.62 Aligned_cols=49 Identities=10% Similarity=-0.090 Sum_probs=38.7
Q ss_pred hHHHHHHHhcccCcceeEEEecC-------CCcc--------cceEEEEeCCHHHHHHHHHhcc
Q 029263 5 QVQVLCTIHHQLMDIVDVLFVHK-------NNKF--------TGEAFCVLGYPLQVDFALQRNR 53 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~~~-------~g~~--------~G~afV~F~~~~~a~~Al~~~~ 53 (196)
.-+.|.++|+.||.|..|.|.++ .|.. +-+|+|+|+..+.|.+|.+.++
T Consensus 244 ~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 244 SYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred HHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 34789999999999999876654 2222 4689999999999999987643
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.78 E-value=0.055 Score=43.69 Aligned_cols=78 Identities=13% Similarity=0.348 Sum_probs=55.2
Q ss_pred cEEEEcCCCCCCCHHHHH---HHhhcCCCccceEEEEeCCC--CCC--ceEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 029263 108 GILRLRGLPFSAGKDDIM---DFFKDFVLSEDSIHITMNSD--GRP--TGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 179 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~---~~F~~~g~~~~~v~l~~~~~--g~~--~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~ 179 (196)
.-+||-+||.....+++. ++|.+||.+. .|.+-.+.. ... .--++|+|...++|..|+.. +|..+.|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~-ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKIN-KIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccce-EEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457788888775554443 6788888654 455544331 111 11389999999999999987 99999999988
Q ss_pred EEECChH
Q 029263 180 LFPSSHE 186 (196)
Q Consensus 180 V~~~~~~ 186 (196)
..+.+..
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8877655
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.81 E-value=1.1 Score=33.55 Aligned_cols=60 Identities=8% Similarity=0.141 Sum_probs=40.9
Q ss_pred CHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-C--CCccCCeEEEEEECCh
Q 029263 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-D--RMTLGSRYIELFPSSH 185 (196)
Q Consensus 120 t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~--g~~l~gr~i~V~~~~~ 185 (196)
..+.|+++|..++... ....+. +-+=..|.|.+.++|.+|... + +..+.|..++|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~-~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPV-QFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS--EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCce-EEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4588999999998543 343332 233589999999999999976 8 8999999999988743
No 195
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=90.71 E-value=0.43 Score=32.98 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=33.0
Q ss_pred cEEEEcCCCCCC---------CHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHH-HHHHHHh
Q 029263 108 GILRLRGLPFSA---------GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED-SKAAMAK 168 (196)
Q Consensus 108 ~~l~v~nLp~~~---------t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~-A~~Al~~ 168 (196)
.++.|.|+|-.. +.+.|.+.|..|.... ++.+.+..| +.|+++|+|...-. -..|+.+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k--v~~l~~~~g-h~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK--VKPLYGKQG-HTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE--EEEEEETTE-EEEEEEEE--SSHHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce--eEECcCCCC-CcEEEEEEECCChHHHHHHHHH
Confidence 467777876443 4578999999988755 776666654 78999999998433 3555544
No 196
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.91 E-value=0.32 Score=38.03 Aligned_cols=49 Identities=18% Similarity=0.060 Sum_probs=42.8
Q ss_pred CchHHHHHHHhcccCccee-EEEecCCCcccceEEEEeCCHHHHHHHHHh
Q 029263 3 LPQVQVLCTIHHQLMDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 51 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~-v~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 51 (196)
..+-|.+.+-|+.||.|.. |.++|..|+..|.++|.|...-.|.+|+.+
T Consensus 42 ~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 42 GASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred hhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHH
Confidence 3566889999999999987 567888999999999999999999999964
No 197
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=89.54 E-value=1.4 Score=35.09 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=38.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCH
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~ 159 (196)
.-|+|.|||.++--.||+..+...+.+.-++.|. -+.|-||.+|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCc
Confidence 4599999999999999999999888666455554 2567899999874
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.35 E-value=2.1 Score=36.33 Aligned_cols=68 Identities=15% Similarity=0.272 Sum_probs=55.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCC
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS 175 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~g 175 (196)
+..|+|-.+|-..|..||..|...+--....|++++|..+ ++=..+|+|++..+|..=... ||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999999999988633347999996532 333588999999999998865 9988764
No 199
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.03 E-value=0.39 Score=42.31 Aligned_cols=68 Identities=7% Similarity=0.030 Sum_probs=56.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
...++||+|+.+.+..+-++.+...+|.+. +. ++.. |||..|....-+.+|+.+ +...++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~-s~--kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVP-SW--KRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcch-hh--hhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 456899999999999999999999999765 32 2221 899999999999999876 88889888887755
No 200
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=87.34 E-value=2.8 Score=33.39 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=59.9
Q ss_pred eEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhccccCCCCCCCCCCC----CCCCCCCCCCCCCcccE
Q 029263 34 EAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP----RAKSHDEGKDSAVHTGI 109 (196)
Q Consensus 34 ~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 109 (196)
.-||.|+..-.-.-.++..-.+++|..|++..-...--........ +. +...+|. ..+.... --+.....+
T Consensus 77 id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eaki-df---psrhdwdd~fm~~kdmde-mkpgerpdt 151 (445)
T KOG2891|consen 77 IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKI-DF---PSRHDWDDFFMDAKDMDE-MKPGERPDT 151 (445)
T ss_pred cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcC-CC---CcccchHHHHhhhhhhhc-cCCCCCCCc
Confidence 5788888766555455666677788887774432111111111111 00 0111111 0000111 011223467
Q ss_pred EEEcCCCC------------CCCHHHHHHHhhcCCCccceEEEEeCC------CCCCceEEEEE
Q 029263 110 LRLRGLPF------------SAGKDDIMDFFKDFVLSEDSIHITMNS------DGRPTGEAFVE 155 (196)
Q Consensus 110 l~v~nLp~------------~~t~~~l~~~F~~~g~~~~~v~l~~~~------~g~~~G~afV~ 155 (196)
|++.+||- -.+++-|...|+.||.+. .|.|+..+ +|+..|.-|-.
T Consensus 152 i~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir-~vdipicdplr~~mn~kisgiq~~g 214 (445)
T KOG2891|consen 152 IHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIR-NVDIPICDPLREEMNGKISGIQFHG 214 (445)
T ss_pred eeecCCcceeeeecccccccCChHHHHHHHHHHhccce-ecCCcccchhHHHhcCccccceeec
Confidence 88888872 257789999999999665 56654332 67765544433
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.98 E-value=4.7 Score=24.85 Aligned_cols=52 Identities=4% Similarity=-0.056 Sum_probs=38.2
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeE
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYV 61 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i 61 (196)
..|-+|++..+..| .-.+|+ .|.+| =||.|.+..+|+++.. .++..+.+..|
T Consensus 11 ~~~v~d~K~~Lr~y-~~~~I~-~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY-RWDRIR-DDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcC-CcceEE-ecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 35678899999883 344554 66665 5999999999999994 57776655444
No 202
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.91 E-value=3.7 Score=29.46 Aligned_cols=48 Identities=10% Similarity=-0.045 Sum_probs=35.5
Q ss_pred HHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeE
Q 029263 9 LCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYV 61 (196)
Q Consensus 9 l~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i 61 (196)
|-..++.||.|.+|...- + -.|.|.|.+..+|.+|+...+....|.-+
T Consensus 107 V~~~Ls~fGpI~SVT~cG---r--qsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 107 VIQRLSVFGPIQSVTLCG---R--QSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred HHHHHHhcCCcceeeecC---C--ceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 445568899999986553 2 26999999999999999776655555443
No 203
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.60 E-value=8.1 Score=24.13 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHhhcC-CCccceE---EEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 117 FSAGKDDIMDFFKDF-VLSEDSI---HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 117 ~~~t~~~l~~~F~~~-g~~~~~v---~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
..++..+|..++... |+....| .+... |+||+-.. +.|..++.. ++..+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 567888999999766 5444333 33322 89999865 467777865 999999999999875
No 204
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=79.96 E-value=2.5 Score=34.68 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=44.8
Q ss_pred chHHHHHHHhcccCccee---EE-Ee-cCCCcccceEEEEeCCHHHHHHHHHh-cccccCCeeEEEEEcChH
Q 029263 4 PQVQVLCTIHHQLMDIVD---VL-FV-HKNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~---v~-~~-~~~g~~~G~afV~F~~~~~a~~Al~~-~~~~l~~~~i~v~~~~~~ 69 (196)
.|++||.+...+ ..+.+ +. +- ..+|.++|||.|...+....+.-++. ..+.+-|..-.|..+.+.
T Consensus 92 TTD~DL~~A~~S-~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~NK~ 162 (498)
T KOG4849|consen 92 TTDADLLKALQS-TGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYNKT 162 (498)
T ss_pred eccHHHHHHHHh-hhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccchh
Confidence 477888888877 33433 42 22 35999999999999999988888864 455565555556555433
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=79.93 E-value=5.5 Score=29.88 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=39.9
Q ss_pred hHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hc--ccccCCeeEEEEEcC
Q 029263 5 QVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RN--RQNMGRRYVEVFRSK 67 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~--~~~l~~~~i~v~~~~ 67 (196)
..+.|+++|..++.+........= +=..|.|.+.++|.+|.. ++ +..+.|..+.++-..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 457899999998888886544322 238999999999999984 56 677888888886553
No 206
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=76.24 E-value=1.6 Score=39.89 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=60.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCcc--CCeEEEEEECCh
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL--GSRYIELFPSSH 185 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l--~gr~i~V~~~~~ 185 (196)
..++.|.+-..+-.-|-.+++.||.+. ++..+++.+ .|.|.|.+.+.|..|+.. +|+.+ -|-+.+|..++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~-s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVA-SAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchh-hheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 455667777888889999999999776 565555544 699999999999999965 87755 588899999988
Q ss_pred HHHHH
Q 029263 186 EEMDE 190 (196)
Q Consensus 186 ~~~~~ 190 (196)
.+|.+
T Consensus 374 ~~~~e 378 (1007)
T KOG4574|consen 374 LPMYE 378 (1007)
T ss_pred ccccc
Confidence 77653
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=74.72 E-value=15 Score=22.92 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=31.9
Q ss_pred CCchHHHHHHHhcccCccee-----EEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEE
Q 029263 2 ELPQVQVLCTIHHQLMDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFR 65 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~-----v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~ 65 (196)
++.+..+|..++...++|.. |.+.+ -|+||+-... .|..++ .+++..+.|+.+.|..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 46677888888877666653 33333 2899998876 477777 5688999999988865
No 208
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=71.57 E-value=2 Score=34.93 Aligned_cols=55 Identities=7% Similarity=-0.045 Sum_probs=38.3
Q ss_pred HHhcccCcceeEEEe-cC-----CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEc
Q 029263 11 TIHHQLMDIVDVLFV-HK-----NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 66 (196)
Q Consensus 11 ~~F~~~g~i~~v~~~-~~-----~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~ 66 (196)
++|..||.|..|.+. +. .|... -++|.|...++|..||. -++..+.++.++.+..
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~lka~~g 160 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRALKASLG 160 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhhHHhhC
Confidence 578888999998643 22 22222 28999999999999995 4777777766554433
No 209
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.16 E-value=12 Score=31.46 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=46.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~ 168 (196)
....|-|.++|...--+||...|+.|+..-=.|.|+.|. .||-.|.+.-.|..||.+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhc
Confidence 345788999999999999999999997433247777553 499999999999999976
No 210
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=69.76 E-value=10 Score=33.20 Aligned_cols=55 Identities=9% Similarity=0.196 Sum_probs=37.7
Q ss_pred CCchHHHHHHHhcc--cCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHh---cccccCCeeE
Q 029263 2 ELPQVQVLCTIHHQ--LMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR---NRQNMGRRYV 61 (196)
Q Consensus 2 ~~~te~dl~~~F~~--~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~---~~~~l~~~~i 61 (196)
|+...++|+.+|+. |-.++++-+...+ -=||.|++..||+.|.+. --+.+-|++|
T Consensus 185 ettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 185 ETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 56778999999977 5566666544322 269999999999998653 2333445544
No 211
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=68.92 E-value=1.7 Score=34.16 Aligned_cols=54 Identities=13% Similarity=0.018 Sum_probs=40.6
Q ss_pred HHHHHHhcccCcceeEEEe--cCC--------Ccc----cceEEEEeCCHHHHHHHH-HhcccccCCee
Q 029263 7 QVLCTIHHQLMDIVDVLFV--HKN--------NKF----TGEAFCVLGYPLQVDFAL-QRNRQNMGRRY 60 (196)
Q Consensus 7 ~dl~~~F~~~g~i~~v~~~--~~~--------g~~----~G~afV~F~~~~~a~~Al-~~~~~~l~~~~ 60 (196)
.-|+++|+.||+|-.|.+. +.. |.+ --.|+|+|.+.-.|.... .+|+..+||+.
T Consensus 89 ~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 89 VRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 4689999999999888653 112 222 235789999999999855 68999998764
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=68.32 E-value=6.9 Score=25.61 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=26.3
Q ss_pred EEEEeCCHHHHHHHHHh--CCCccCCeEEEEEEC
Q 029263 152 AFVEFANAEDSKAAMAK--DRMTLGSRYIELFPS 183 (196)
Q Consensus 152 afV~F~~~~~A~~Al~~--~g~~l~gr~i~V~~~ 183 (196)
|+|+|..+.-|.+.+.+ +...++++.+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 78999999999999976 677888888777653
No 213
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.31 E-value=26 Score=31.01 Aligned_cols=76 Identities=22% Similarity=0.220 Sum_probs=54.4
Q ss_pred CCcccEEEEcCCCCC-CCHHHHHHHhhcC---C-CccceEEEEeCC-----------CCC--------------------
Q 029263 104 AVHTGILRLRGLPFS-AGKDDIMDFFKDF---V-LSEDSIHITMNS-----------DGR-------------------- 147 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~-~t~~~l~~~F~~~---g-~~~~~v~l~~~~-----------~g~-------------------- 147 (196)
...+++|.|=||.+. +.-.||..+|+.| | .+. +|.|.... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsil-SV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSIL-SVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCcee-EEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 345689999999976 7779999999876 3 333 66665432 222
Q ss_pred ---------------Cc--eEEEEEeCCHHHHHHHHH-hCCCccCCeEEEE
Q 029263 148 ---------------PT--GEAFVEFANAEDSKAAMA-KDRMTLGSRYIEL 180 (196)
Q Consensus 148 ---------------~~--G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V 180 (196)
.. =||.|+|.+...|.+... |+|..+...-..+
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 01 189999999999999885 6999987654443
No 214
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=64.24 E-value=7.3 Score=30.31 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=27.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCcc
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSE 135 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~ 135 (196)
...++|+-|+|..+|++-|..+.+.+|.+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhh
Confidence 457999999999999999999999998655
No 215
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=63.42 E-value=45 Score=22.76 Aligned_cols=54 Identities=6% Similarity=-0.101 Sum_probs=37.1
Q ss_pred hHHHHHHHhcccCcceeE-EE-ecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCe
Q 029263 5 QVQVLCTIHHQLMDIVDV-LF-VHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRR 59 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v-~~-~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~ 59 (196)
+-++|..+.+.+...++. .+ .|.. .++=-+.+.|.+.++|..-- +.||+.+..-
T Consensus 26 ~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 26 PSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred cHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 456777676776655554 33 3433 25556899999999999987 5788887643
No 216
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=63.20 E-value=4.3 Score=28.86 Aligned_cols=77 Identities=9% Similarity=-0.009 Sum_probs=51.7
Q ss_pred cceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCcccEEE
Q 029263 32 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 111 (196)
Q Consensus 32 ~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 111 (196)
.|+..+.|.+++|+.+++....-.+++..+.+.+..+..- .. .........-|.
T Consensus 55 ~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~------------------------~~--~~~~~~~~vWVr 108 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFN------------------------PS--EVKFEHIPVWVR 108 (153)
T ss_pred CCeEEEEEEeccceeEEEecccccccccchhhhhhccccc------------------------cc--ccceeccchhhh
Confidence 3689999999999999997766667777666655441110 00 000111234688
Q ss_pred EcCCCCC-CCHHHHHHHhhcCCCc
Q 029263 112 LRGLPFS-AGKDDIMDFFKDFVLS 134 (196)
Q Consensus 112 v~nLp~~-~t~~~l~~~F~~~g~~ 134 (196)
+.|||.. -+++-++++-+.+|.+
T Consensus 109 i~glP~~~~~~~~~~~i~~~iG~~ 132 (153)
T PF14111_consen 109 IYGLPLHLWSEEILKAIGSKIGEP 132 (153)
T ss_pred hccCCHHHhhhHHHHHHHHhcCCe
Confidence 9999987 6677888888888854
No 217
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.11 E-value=7.1 Score=26.96 Aligned_cols=50 Identities=14% Similarity=0.025 Sum_probs=28.5
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCH-HHHHHHHHhccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYP-LQVDFALQRNRQ 54 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~-~~a~~Al~~~~~ 54 (196)
+.+.+.|++.|+.|. ..++. +.+.. .+.|+|.|+|.+- .....|+...+.
T Consensus 28 g~~~~~l~~~l~~f~-p~kv~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~l~~~ 79 (116)
T PF03468_consen 28 GMSNEELLDKLAEFN-PLKVKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMRLEKH 79 (116)
T ss_dssp ---SHHHHHHHHH----SEEEEEEETT-EEEEEEEEE--SSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhcC-CceeEECcCCC-CCcEEEEEEECCChHHHHHHHHHHHH
Confidence 345678999999954 44553 45555 4789999999874 445556655333
No 218
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=62.68 E-value=18 Score=25.57 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=29.3
Q ss_pred CchHHHHHHHhcccCccee---EEE---ec--CCCcccceEEEEeCCHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIVD---VLF---VH--KNNKFTGEAFCVLGYPLQVDF 47 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~---v~~---~~--~~g~~~G~afV~F~~~~~a~~ 47 (196)
+|+-.||++-++....|.+ |++ .. ..|.+.|||.| |++.+.|.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 6888999999988655432 222 22 36788888887 666665544
No 219
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=62.12 E-value=6.1 Score=31.54 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=28.1
Q ss_pred CCchHHHHHHHhcccCcceeEE--Eec-----CCCcccceEEEEeC
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVL--FVH-----KNNKFTGEAFCVLG 40 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~--~~~-----~~g~~~G~afV~F~ 40 (196)
++|+|+-|+..|..||+|..|. +.| -+|+..|.-|-.|.
T Consensus 171 dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg 216 (445)
T KOG2891|consen 171 DLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFG 216 (445)
T ss_pred cCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccc
Confidence 5799999999999999997763 334 36777665444443
No 220
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=60.82 E-value=23 Score=23.75 Aligned_cols=44 Identities=11% Similarity=0.003 Sum_probs=28.4
Q ss_pred CchHHHHHHHhcccCcce-e-EEEe---c--CCCcccceEEEEeCCHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIV-D-VLFV---H--KNNKFTGEAFCVLGYPLQVDF 47 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~-~-v~~~---~--~~g~~~G~afV~F~~~~~a~~ 47 (196)
+|+..||++-+....+.. + |++. . ..|.+.|||.| |++.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 678889998887743322 3 3222 2 36778888887 677776655
No 221
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.40 E-value=2 Score=36.36 Aligned_cols=75 Identities=12% Similarity=-0.097 Sum_probs=56.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECCh
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 185 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 185 (196)
..|+..||...+++++.-+|..+|+++ .+.+.+.. .|...-.+||+-.+ .+|..+++. ..+.+.|..++|.++..
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~-~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIIS-MEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhHhhcccccccchhhhhccCCccee-eccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 467889999999999999999999876 66665444 44455678887654 566777754 66777888888888743
No 222
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=57.86 E-value=39 Score=21.48 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=37.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHH
Q 029263 110 LRLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 165 (196)
Q Consensus 110 l~v~nLp~~~t~~~l~~~F~~-~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~A 165 (196)
-|+-..+..+|..+|++.++. |++...+|....-+.+ ---|||++.....|...
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEI 70 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHH
Confidence 456667899999999999987 6755546655544322 22599999887777554
No 223
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=57.73 E-value=21 Score=21.73 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=13.3
Q ss_pred HHHHHHhcccCcceeE
Q 029263 7 QVLCTIHHQLMDIVDV 22 (196)
Q Consensus 7 ~dl~~~F~~~g~i~~v 22 (196)
++||++||..|+|.-+
T Consensus 9 ~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVL 24 (62)
T ss_pred HHHHHHHHhcCcEEEE
Confidence 5899999998888654
No 224
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=57.15 E-value=19 Score=23.30 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=28.1
Q ss_pred CchHHHHHHHhcccCccee--EE---Eec--CCCcccceEEEEeCCHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIVD--VL---FVH--KNNKFTGEAFCVLGYPLQVDF 47 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~--v~---~~~--~~g~~~G~afV~F~~~~~a~~ 47 (196)
+|+..||++-++...++.. |+ +.. ..|.+.|||.| |++.+.+.+
T Consensus 12 Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 12 TPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp S--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 5788999999988655522 32 233 35677888887 777776665
No 225
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=53.84 E-value=34 Score=27.69 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=15.7
Q ss_pred EEEEeCCHHHHHHHHHh
Q 029263 35 AFCVLGYPLQVDFALQR 51 (196)
Q Consensus 35 afV~F~~~~~a~~Al~~ 51 (196)
|||.|++..+|..|++.
T Consensus 1 aFVtF~~~~~a~~~~q~ 17 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQL 17 (325)
T ss_pred CEEEECCHHHHHHHHHH
Confidence 79999999999999973
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=53.55 E-value=56 Score=21.16 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=38.7
Q ss_pred EEcCCCCCCCHHHHHHHhhc-CCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHH
Q 029263 111 RLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 166 (196)
Q Consensus 111 ~v~nLp~~~t~~~l~~~F~~-~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al 166 (196)
|+--.+..+|+.+|++.++. ||....+|..+.-+.| .--|||++....+|....
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHH
Confidence 44556789999999999987 6855556766554432 225999999888886654
No 227
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=52.06 E-value=11 Score=20.27 Aligned_cols=16 Identities=6% Similarity=-0.301 Sum_probs=14.0
Q ss_pred CCchHHHHHHHhcccC
Q 029263 2 ELPQVQVLCTIHHQLM 17 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g 17 (196)
+.|++++|++++..+|
T Consensus 2 dtWs~~~L~~wL~~~g 17 (38)
T PF10281_consen 2 DTWSDSDLKSWLKSHG 17 (38)
T ss_pred CCCCHHHHHHHHHHcC
Confidence 6799999999999855
No 228
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=51.84 E-value=50 Score=19.66 Aligned_cols=49 Identities=8% Similarity=0.195 Sum_probs=33.1
Q ss_pred HHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCcc
Q 029263 122 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 173 (196)
Q Consensus 122 ~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l 173 (196)
.+|.++|...|+...++..... +. ++.--+.+.+.+.|.++|..+|..+
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~--~~-~~~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADT--SE-FGILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEec--CC-CCEEEEEECCHHHHHHHHHHCCCEE
Confidence 6888999998864435554332 22 4666677777878888888776543
No 229
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=51.66 E-value=54 Score=22.71 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHhhc-CCCccceEEEEeC----CCCCCceEEEEEeCCHHHHHH
Q 029263 117 FSAGKDDIMDFFKD-FVLSEDSIHITMN----SDGRPTGEAFVEFANAEDSKA 164 (196)
Q Consensus 117 ~~~t~~~l~~~F~~-~g~~~~~v~l~~~----~~g~~~G~afV~F~~~~~A~~ 164 (196)
.+++.+||++-... |-...+.|.+..- ..|++.|||.| |.+.+.|..
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 67888999987765 4444445544321 27889999986 666555543
No 230
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=47.07 E-value=34 Score=25.60 Aligned_cols=52 Identities=13% Similarity=-0.015 Sum_probs=34.8
Q ss_pred HHHHHHhcccCcceeEEEe-cCCC--cccceEEEEeCCHHHHHHHHHhcccccCCee
Q 029263 7 QVLCTIHHQLMDIVDVLFV-HKNN--KFTGEAFCVLGYPLQVDFALQRNRQNMGRRY 60 (196)
Q Consensus 7 ~dl~~~F~~~g~i~~v~~~-~~~g--~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~ 60 (196)
++|.+|-+ +.+..|... ..++ ..+|--||.|.+.++|.+.++......+.+.
T Consensus 124 ~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~e 178 (205)
T KOG4213|consen 124 DDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETE 178 (205)
T ss_pred HHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchH
Confidence 44555554 566666433 2233 6789999999999999998876655544443
No 231
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=47.05 E-value=8.5 Score=23.73 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh
Q 029263 122 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168 (196)
Q Consensus 122 ~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~ 168 (196)
++|++.|..++....-|++. +|..|.+.++|..++..
T Consensus 27 ~~v~~~~~~~~~f~k~vkL~----------aF~pF~s~~~ALe~~~a 63 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKLK----------AFSPFKSAEEALENANA 63 (67)
T ss_pred HHHHHHHcCHHHHhhhhhhh----------hccCCCCHHHHHHHHHH
Confidence 68888888765333234544 99999999999777654
No 232
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=40.54 E-value=34 Score=20.87 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=21.0
Q ss_pred HHHHHHHhcccCcceeEEEecCCCcccceEEE
Q 029263 6 VQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFC 37 (196)
Q Consensus 6 e~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV 37 (196)
|.+|..+|-+--+|.++.+.-+..-.+|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 45677777664678887665444445677777
No 233
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.24 E-value=63 Score=26.15 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=56.9
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC--------CCCCceEEEEEeCCHHHHH----HHHH--
Q 029263 102 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS--------DGRPTGEAFVEFANAEDSK----AAMA-- 167 (196)
Q Consensus 102 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~--------~g~~~G~afV~F~~~~~A~----~Al~-- 167 (196)
.+...++.|...|+..+++--.+...|-.||.++ +|.++.+. .-...--..+-|-+.+.+- ..++
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIE-SiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIE-SIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCcee-EEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999999998 99998654 1223345677887766542 2221
Q ss_pred -hCCCccCCeEEEEEECC
Q 029263 168 -KDRMTLGSRYIELFPSS 184 (196)
Q Consensus 168 -~~g~~l~gr~i~V~~~~ 184 (196)
.=.+.|....|.|+..+
T Consensus 89 sEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHhcCCcceeEEEEE
Confidence 12456667777766653
No 234
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=35.14 E-value=66 Score=20.02 Aligned_cols=60 Identities=23% Similarity=0.238 Sum_probs=40.3
Q ss_pred HHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 122 DDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 122 ~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
.+|.+-|...|.....|+-+... ++.+--.=+|+.....+-.. -++-+.|+|+.|.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecC
Confidence 46888899989655456655554 35566677888776543333 23667889999988654
No 235
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.95 E-value=1.2e+02 Score=25.85 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=37.0
Q ss_pred HHHHHHhcccCcc-eeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 7 QVLCTIHHQLMDI-VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 7 ~dl~~~F~~~g~i-~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
+||...|+.|++- .+|..+|.+ .||-.|++.-.|..||.+ +.-++++.+..
T Consensus 406 eDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~-----kh~~lKiRpLa 457 (528)
T KOG4483|consen 406 EDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL-----KHDWLKIRPLA 457 (528)
T ss_pred HHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhc-----cCceEEeeehh
Confidence 4777788887543 568778766 599999999999999955 34455665543
No 236
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=33.31 E-value=55 Score=25.76 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhh
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFK 129 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~ 129 (196)
...++|+|||+.++..-|.+++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45789999999999999999997
No 237
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=33.21 E-value=95 Score=24.72 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=21.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCC
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVL 133 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~ 133 (196)
....|.||||+++-.-|..+++..-.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~ 121 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFI 121 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCc
Confidence 35679999999999999999986443
No 238
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=32.82 E-value=1e+02 Score=19.70 Aligned_cols=31 Identities=13% Similarity=0.211 Sum_probs=21.5
Q ss_pred CcceeEEEecCCCcccceEEEEeCCHHHHHHHHH
Q 029263 17 MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ 50 (196)
Q Consensus 17 g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~ 50 (196)
.+|.++...+ .-+||-|||=.+++++..|++
T Consensus 32 l~I~Si~~~~---~lkGyIyVEA~~~~~V~~ai~ 62 (84)
T PF03439_consen 32 LNIYSIFAPD---SLKGYIYVEAERESDVKEAIR 62 (84)
T ss_dssp ----EEEE-T---TSTSEEEEEESSHHHHHHHHT
T ss_pred CceEEEEEeC---CCceEEEEEeCCHHHHHHHHh
Confidence 3455555443 367999999999999999995
No 239
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=30.76 E-value=46 Score=24.93 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=40.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCC--CCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG--RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g--~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~ 181 (196)
+++|.. |-...-++|.+|-+ |-+. .|.+-....+ .-+|--||+|.+.++|.+.+..+......+.|..+
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~-nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~r~ 182 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGH-NVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELKRS 182 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccce-EeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHHHH
Confidence 456666 33333344555544 3322 3333322233 46889999999999999988776665555555443
No 240
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=29.37 E-value=99 Score=23.43 Aligned_cols=51 Identities=14% Similarity=0.302 Sum_probs=34.7
Q ss_pred CHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh--CCCccC
Q 029263 120 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK--DRMTLG 174 (196)
Q Consensus 120 t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~--~g~~l~ 174 (196)
+.++..++...++... +.+..| |...|-+.+...+.++|..|+.. ....++
T Consensus 25 ~~~~A~~~l~~~~~p~--~ViKad--Gla~GKGV~i~~~~~eA~~~l~~~~~~~~fg 77 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY--VVIKAD--GLAAGKGVVIADDREEALEALREIFVDRKFG 77 (194)
T ss_dssp SHHHHHHHHHHHSSSE--EEEEES--SSCTTTSEEEESSHHHHHHHHHHHHTSSTTC
T ss_pred CHHHHHHHHHhcCCCc--eEEccC--CCCCCCEEEEeCCHHHHHHHHHHhccccccC
Confidence 5678888888776432 344444 56666667777999999999953 545554
No 241
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=29.29 E-value=1.3e+02 Score=19.87 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=29.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEe-----CCCCCCceEEEEEeC
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM-----NSDGRPTGEAFVEFA 157 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~-----~~~g~~~G~afV~F~ 157 (196)
...|+.|||..+-+..+...-..+......+.+.. ...+.+.|++.+-+.
T Consensus 11 g~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 11 GIAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 35689999999999776654443321111344443 346777887776553
No 242
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=28.91 E-value=1.6e+02 Score=19.16 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=32.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CCCccceEEEEeCC-----CCCCc------eEEEEEeCCH
Q 029263 110 LRLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNS-----DGRPT------GEAFVEFANA 159 (196)
Q Consensus 110 l~v~nLp~~~t~~~l~~~F~~-~g~~~~~v~l~~~~-----~g~~~------G~afV~F~~~ 159 (196)
-++-..|..+|..+|++.++. ||+...+|...... .|... --|+|++...
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~ 83 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEG 83 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTT
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCC
Confidence 355567889999999999976 67555456554332 33322 2577777654
No 243
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=28.43 E-value=1.1e+02 Score=23.27 Aligned_cols=44 Identities=9% Similarity=-0.015 Sum_probs=28.5
Q ss_pred hHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH
Q 029263 5 QVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ 50 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~ 50 (196)
+.++.+++...+.... ++ ...+|...|-+.+...+.++|..|+.
T Consensus 25 ~~~~A~~~l~~~~~p~-~V-iKadGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VV-IKADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EE-EEESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eE-EccCCCCCCCEEEEeCCHHHHHHHHH
Confidence 3456666666644434 22 23456666677888899999999984
No 244
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=27.55 E-value=1.6e+02 Score=23.60 Aligned_cols=42 Identities=19% Similarity=0.062 Sum_probs=35.0
Q ss_pred EEEEeCCHHHHHHHHHhCCCc-cCCeEEEEEECChHHHHHHHH
Q 029263 152 AFVEFANAEDSKAAMAKDRMT-LGSRYIELFPSSHEEMDEALS 193 (196)
Q Consensus 152 afV~F~~~~~A~~Al~~~g~~-l~gr~i~V~~~~~~~~~~~~~ 193 (196)
.=|+|.+...|..|....+.. ++++.|+..-.+..++.++++
T Consensus 221 l~v~f~~~~~Ad~~~~~Pgv~r~d~~tv~~~~~~~~~~~~~~~ 263 (265)
T cd00281 221 LEVEFKDPARAYRKSFYPGCEWIAGSTVRLEVSDWFEVLRALL 263 (265)
T ss_pred EEEEECCHHHHHHhccCCCeEEECCEEEEEecCCHHHHHHHHh
Confidence 558999999999998886665 999999998888888877654
No 245
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.19 E-value=1.1e+02 Score=18.85 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.0
Q ss_pred EEEEEeCCHHHHHHHHHh
Q 029263 151 EAFVEFANAEDSKAAMAK 168 (196)
Q Consensus 151 ~afV~F~~~~~A~~Al~~ 168 (196)
+.+|.|.|..+|.+|-..
T Consensus 3 ~~~i~F~st~~a~~~ek~ 20 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKL 20 (73)
T ss_pred eEEEEECCHHHHHHHHHH
Confidence 689999999999877753
No 246
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=27.11 E-value=2.3e+02 Score=23.76 Aligned_cols=47 Identities=9% Similarity=0.072 Sum_probs=36.6
Q ss_pred hHHHHHHHhcccCcce-----eEEEecCCCcccceEEEEeCCHHHHHHHHHh
Q 029263 5 QVQVLCTIHHQLMDIV-----DVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 51 (196)
Q Consensus 5 te~dl~~~F~~~g~i~-----~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 51 (196)
|-.+++++|.+-.... .+.+.|.+..+.-+-||+..+.+++..||+.
T Consensus 4 ~~~~~~~~~~~~~~~i~~~~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~ 55 (363)
T PRK05772 4 TVKEVKELFKPKLLPIIWKDNTLTLLDQSLLPFETVYVDLKTVEEVALAIRN 55 (363)
T ss_pred hHHHHHHHhCCCCceEEecCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHh
Confidence 6678999998733221 1456788888888999999999999999953
No 247
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=26.27 E-value=1.6e+02 Score=19.14 Aligned_cols=46 Identities=7% Similarity=-0.020 Sum_probs=29.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCC
Q 029263 110 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 158 (196)
Q Consensus 110 l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~ 158 (196)
|||+|++..+-+.-...+-+..+. .++.+...... ..||+|-+..+
T Consensus 28 VyVg~~s~rVRe~lW~~v~~~~~~--G~a~m~~~~~n-eqG~~~~t~G~ 73 (86)
T PF09707_consen 28 VYVGNVSARVRERLWERVTEWIGD--GSAVMVWSDNN-EQGFDFRTLGD 73 (86)
T ss_pred cEEcCCCHHHHHHHHHHHHhhCCC--ccEEEEEccCC-CCCEEEEEeCC
Confidence 899999877766544444444333 23555544444 88999988743
No 248
>PF14893 PNMA: PNMA
Probab=26.00 E-value=51 Score=27.25 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhc
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKD 130 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~ 130 (196)
+.|.|.++|.+|++++|++.+..
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHH
Confidence 56999999999999999987753
No 249
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=25.69 E-value=2.4e+02 Score=19.75 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=34.9
Q ss_pred CCCCHHHHH--------HHhhcCCCccceEEEEeCCCCCCceEEEEEeCC--HHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 117 FSAGKDDIM--------DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN--AEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 117 ~~~t~~~l~--------~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~--~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
..++..++. ++|+.+|...-...++....- .|.|+|.... .+.+.+||.+ . .++|.++.|-.
T Consensus 27 ~~i~~~~l~~~I~~s~l~llG~~gta~~~~~lv~~~~~--t~~GIvrc~R~~~~~v~aAL~l~~--~~~g~rv~I~~ 99 (124)
T COG1369 27 EEITRGELVRLIRRSLLSLLGDVGTAKANPRLVKYYFS--TGTGIVRCRREYVDLVRAALMLAR--EVNGKRVIIVV 99 (124)
T ss_pred ccCChhHHHHHHHHHHHHHcCcccccccceeEEEEecc--CCceEEEEechhHHHHHHHHHHHH--HhCCceEEEEE
Confidence 456666555 455566644323455433311 4567766654 6678888887 5 56665555543
No 250
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=25.67 E-value=36 Score=28.72 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=45.7
Q ss_pred cEEEEcCCCCCCCHH--------HHHHHhhcCC--CccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH
Q 029263 108 GILRLRGLPFSAGKD--------DIMDFFKDFV--LSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA 167 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~--------~l~~~F~~~g--~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~ 167 (196)
+.+|+.+.+...+.+ ++...|.+++ ... .|..-++. ....+|--|++|.....|++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~-~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPS-QIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChh-hccchhhhhhccccCcccccccChHHHHHHhc
Confidence 567777777666655 9999999853 333 57776666 66788889999999999999984
No 251
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=25.57 E-value=1.6e+02 Score=18.03 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 122 DDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 122 ~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
++|.+-|...|.....|.-+... ++.+.-.-||+.+...+...++ +-..|+|+.|.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecC
Confidence 57888888888544355555554 6677778888888765533332 556788999988654
No 252
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=25.07 E-value=53 Score=19.33 Aligned_cols=12 Identities=17% Similarity=0.146 Sum_probs=8.7
Q ss_pred cccceEEEEeCC
Q 029263 30 KFTGEAFCVLGY 41 (196)
Q Consensus 30 ~~~G~afV~F~~ 41 (196)
+++|||||.-.+
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 467899999887
No 253
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=24.09 E-value=2.2e+02 Score=18.65 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHhhcCCCcc-ceEEE-EeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEE
Q 029263 115 LPFSAGKDDIMDFFKDFVLSE-DSIHI-TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182 (196)
Q Consensus 115 Lp~~~t~~~l~~~F~~~g~~~-~~v~l-~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~ 182 (196)
+.+..=.+.|.+.|+ +.. ..+.+ -.|..| -+|.+.+..+-..|+..+...-...+|++++
T Consensus 25 ~~~~~L~~kI~~~f~---l~~~~~~~l~Y~Dedg-----d~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v 86 (91)
T cd06398 25 LNMDGLREKVEELFS---LSPDADLSLTYTDEDG-----DVVTLVDDNDLTDAIQYFCSGSRLNPLRIDV 86 (91)
T ss_pred CCHHHHHHHHHHHhC---CCCCCcEEEEEECCCC-----CEEEEccHHHHHHHHHHHhccCCCceEEEEE
Confidence 344444456666664 221 23555 345566 8999999999999997643333445555543
No 254
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=23.40 E-value=1.9e+02 Score=23.04 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=32.9
Q ss_pred EEEEeCCHHHHHHHHHhCCCc-cCCeEEEEEECChHHHHHHH
Q 029263 152 AFVEFANAEDSKAAMAKDRMT-LGSRYIELFPSSHEEMDEAL 192 (196)
Q Consensus 152 afV~F~~~~~A~~Al~~~g~~-l~gr~i~V~~~~~~~~~~~~ 192 (196)
-=|+|.+...|..+....+.. ++++.|+..-.+..++.+.+
T Consensus 219 l~v~f~~~~~Ad~~~~~Pgv~r~d~~tv~~~~~~~~~~~~~~ 260 (263)
T cd08770 219 LEVKYKDHKEAYRASFYPGATQVDGYTIRFETADYFDVLRFL 260 (263)
T ss_pred EEEEECCHHHHHHhccCCCeEEECCEEEEEecCCHHHHHHHH
Confidence 558999999999988776655 89999988888877777654
No 255
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=23.36 E-value=1e+02 Score=25.94 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=37.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeC---C---CCCCceEEEEEeCCHHHH
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN---S---DGRPTGEAFVEFANAEDS 162 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~---~---~g~~~G~afV~F~~~~~A 162 (196)
..|.|.+||+..+++++.+-..+|.. .+.+... . ....-+.|+|-|..+.+.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~---~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv 65 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPE---HVNWEFFAKADESLRNHKYSRAYINFKNPEDV 65 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCcc---ccchheeccccccchhhhhhhhhhccccHHHH
Confidence 46889999999999999988888542 3333221 1 122366899999998884
No 256
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.20 E-value=1.7e+02 Score=17.18 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCH---HHHHHHHHhCCCc
Q 029263 121 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA---EDSKAAMAKDRMT 172 (196)
Q Consensus 121 ~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~---~~A~~Al~~~g~~ 172 (196)
-.+|..+|..+|....++.......+ ..+...+.+..+ +.+..+|..+|..
T Consensus 15 L~~l~~~l~~~~i~i~~~~~~~~~~~-~~~~~~i~v~~~~~~~~~~~~L~~~G~~ 68 (69)
T cd04909 15 IAEVTQILGDAGISIKNIEILEIREG-IGGILRISFKTQEDRERAKEILKEAGYE 68 (69)
T ss_pred HHHHHHHHHHcCCCceeeEeEEeecC-CcEEEEEEECCHHHHHHHHHHHHHcCCc
Confidence 46788999998854434443332212 345667777654 4445555556653
No 257
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.02 E-value=3e+02 Score=19.87 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=36.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CCCccceEEEEeCCCCCCceEEEEEeCCHHHHHH
Q 029263 110 LRLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 164 (196)
Q Consensus 110 l~v~nLp~~~t~~~l~~~F~~-~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~ 164 (196)
-|+--.+..++..+|++.++. |++....|..+..+.|.. -|||.+....+|..
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aid 137 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALD 137 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHH
Confidence 445556789999999999986 675444565555444322 58999987776543
No 258
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=22.95 E-value=70 Score=17.14 Aligned_cols=15 Identities=13% Similarity=0.463 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHhhcC
Q 029263 117 FSAGKDDIMDFFKDF 131 (196)
Q Consensus 117 ~~~t~~~l~~~F~~~ 131 (196)
-++++++|++.|...
T Consensus 19 ~Dtd~~~Lk~vF~~i 33 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRI 33 (36)
T ss_dssp S---HHHHHHHHHCS
T ss_pred ccCCHHHHHHHHHHh
Confidence 468899999999874
No 259
>PRK03717 ribonuclease P protein component 2; Provisional
Probab=22.56 E-value=2.7e+02 Score=19.22 Aligned_cols=57 Identities=7% Similarity=0.050 Sum_probs=32.2
Q ss_pred HHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCC--HHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 122 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN--AEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 122 ~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~--~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
+.+.++|+.+|...-...++.. ...+|.|+|.-.. .+.+.+||.+ + .++|+++.+..
T Consensus 40 ~av~~~fGd~G~~~~~~~li~f--~~~t~~gIlRc~R~~~~~v~aAL~li~--~i~~~~v~ir~ 99 (120)
T PRK03717 40 EASLSTLGELGTARAKPWFIKF--DEKTQTGIVRCDRKHVEELRFALTLVT--EINGSKAIIRT 99 (120)
T ss_pred HHHHHHcChhhhccccceEEEE--eCCCCEEEEEcCchhHHHHHHHHHHHH--hCCCeeEEEEE
Confidence 3455678888754322333322 1225678888766 4467778766 5 34566655543
No 260
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=22.20 E-value=2.1e+02 Score=17.92 Aligned_cols=63 Identities=11% Similarity=0.168 Sum_probs=35.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCc--c-ceEEEEeCCCCCCceEEEEEe--CCHHHHHHHHHhCCC
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLS--E-DSIHITMNSDGRPTGEAFVEF--ANAEDSKAAMAKDRM 171 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~--~-~~v~l~~~~~g~~~G~afV~F--~~~~~A~~Al~~~g~ 171 (196)
.+-.++||..+|.++|.+.-.....+ . ..|+++..--....|-.|+.| .+++...++-...|.
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG~ 69 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRAGL 69 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHcCC
Confidence 35678999989999999887653211 1 146666443222223344444 445554554444543
No 261
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=21.63 E-value=1.2e+02 Score=24.70 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=50.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCC-ceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECChH
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP-TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~-~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~~~ 186 (196)
..|.-+||-.-..+++|++++..-.+ .+.|-..+||++ -+| ||-...-.+-..| |+.++|.+|.-.
T Consensus 10 ~~lItrnlqE~lgee~lk~iL~er~l---~~YwGtaptGrpHiay-~vpm~kiadflkA---------GC~VtIl~AD~h 76 (360)
T KOG2144|consen 10 YKLITRNLQEVLGEEELKNILAERAL---KCYWGTAPTGRPHIAY-FVPMMKIADFLKA---------GCEVTILFADLH 76 (360)
T ss_pred HHHHHHHHHHHhCHHHHHHHHhccCc---eeeecCCCCCCcceee-eeehhHHHHHHhc---------CCeEEEEehHHH
Confidence 34556788888899999999987222 467777778874 556 7777666565555 899999998765
Q ss_pred HHHHH
Q 029263 187 EMDEA 191 (196)
Q Consensus 187 ~~~~~ 191 (196)
.+...
T Consensus 77 A~LdN 81 (360)
T KOG2144|consen 77 AFLDN 81 (360)
T ss_pred HHHhc
Confidence 55443
No 262
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=21.47 E-value=83 Score=17.60 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=16.4
Q ss_pred EcCCCCCCCHHHHHHHhhc
Q 029263 112 LRGLPFSAGKDDIMDFFKD 130 (196)
Q Consensus 112 v~nLp~~~t~~~l~~~F~~ 130 (196)
|-||+..++.++|+.-|..
T Consensus 5 vLgl~~~~~~~~ik~~y~~ 23 (55)
T cd06257 5 ILGVPPDASDEEIKKAYRK 23 (55)
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 5678899999999998876
No 263
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=21.44 E-value=1.9e+02 Score=23.30 Aligned_cols=21 Identities=5% Similarity=0.320 Sum_probs=18.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhc
Q 029263 110 LRLRGLPFSAGKDDIMDFFKD 130 (196)
Q Consensus 110 l~v~nLp~~~t~~~l~~~F~~ 130 (196)
+.|.||||.++...|..+++.
T Consensus 104 ~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 104 VCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred EEEecCCcccCcHHHHHHHhc
Confidence 678999999999999999864
No 264
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=21.36 E-value=2.5e+02 Score=22.43 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=32.8
Q ss_pred EEEEeCCHHHHHHHHHhCCCc-cCCeEEEEEECChHHHHHHH
Q 029263 152 AFVEFANAEDSKAAMAKDRMT-LGSRYIELFPSSHEEMDEAL 192 (196)
Q Consensus 152 afV~F~~~~~A~~Al~~~g~~-l~gr~i~V~~~~~~~~~~~~ 192 (196)
-=|+|.+...|..|....|.. ++++.|+..-.+..++.+.+
T Consensus 221 l~i~f~~~~~Ad~~~~~Pgv~r~d~~tV~~~~~~~~e~~~~~ 262 (266)
T cd08663 221 LEIEFANTAQADLAALVPGVERIGGRTVRFTADDMAEAYRAF 262 (266)
T ss_pred EEEEECCHHHHHHhhcCCCeEEeCCEEEEEeCCCHHHHHHHH
Confidence 458999999999988886665 89998888877777776654
No 265
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=20.68 E-value=54 Score=30.53 Aligned_cols=63 Identities=13% Similarity=-0.001 Sum_probs=46.2
Q ss_pred chHHHHHHHhcccCcceeEEE-ecCCCcccceEEEEeCCHHHHHHHH-Hhccccc--CCeeEEEEEcChHHH
Q 029263 4 PQVQVLCTIHHQLMDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNM--GRRYVEVFRSKRQEY 71 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~-~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l--~~~~i~v~~~~~~~~ 71 (196)
-|-.-|..+|++||.+.+++. .+-+ -|.|+|.+.+.|-.|+ .+.|..+ -|-+.+|..+...++
T Consensus 310 ~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 310 LTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred chHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 355678899999999999874 4444 5999999999999999 4666654 455666655544444
No 266
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=20.66 E-value=69 Score=20.27 Aligned_cols=73 Identities=12% Similarity=-0.012 Sum_probs=37.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceE---EEEeCCCCCCceEEEEEeCCHHHHHHHHH-h-CCCccCCeEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI---HITMNSDGRPTGEAFVEFANAEDSKAAMA-K-DRMTLGSRYIEL 180 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v---~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~-~g~~l~gr~i~V 180 (196)
..+.|.+.|=+...=+.-+..+-.-+|...+.. .+.- ...|.|.|...+.+.|+.... + ......|.||++
T Consensus 5 ~~~~vvL~NDe~ht~~~Vi~~L~~~~~~s~~~A~~~a~~v----~~~G~avv~~~~~e~ae~~~~~l~~~g~~~~~PL~~ 80 (82)
T PF02617_consen 5 DMYRVVLWNDEVHTFEQVIDVLRRVFGCSEEQARQIAMEV----HREGRAVVGTGSREEAEEYAEKLQRAGRDSGHPLRA 80 (82)
T ss_dssp -EEEEEEE--SSSBHHHHHHHHHHHC---HHHHHHHHHHH----HHHSEEEEEEEEHHHHHHHHHHHHHHHHHTT---EE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH----hHcCCEeeeeCCHHHHHHHHHHHHHHhhccCCCeEE
Confidence 346788888655554444444444445333111 1111 145689999999998877664 3 333777888887
Q ss_pred EE
Q 029263 181 FP 182 (196)
Q Consensus 181 ~~ 182 (196)
+.
T Consensus 81 ti 82 (82)
T PF02617_consen 81 TI 82 (82)
T ss_dssp EE
T ss_pred eC
Confidence 63
No 267
>PHA02762 hypothetical protein; Provisional
Probab=20.41 E-value=1.2e+02 Score=17.71 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=16.2
Q ss_pred cCCCccceEEEEeCCCCCCceEEEEEeCC
Q 029263 130 DFVLSEDSIHITMNSDGRPTGEAFVEFAN 158 (196)
Q Consensus 130 ~~g~~~~~v~l~~~~~g~~~G~afV~F~~ 158 (196)
.||... |.+.+....+-.|.|||+-.-
T Consensus 8 ~fgnli--i~~~rs~~ks~eg~afvtigi 34 (62)
T PHA02762 8 DFGNLI--IEFKRNVEKSFEGEAFVTIGI 34 (62)
T ss_pred CCccEE--EEEecCccccccccEEEEEeE
Confidence 455433 444444456677899988653
No 268
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=20.18 E-value=2.4e+02 Score=22.66 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=34.5
Q ss_pred EEEEEeCCHHHHHHHHHhCC-CccCCeEEEEEECChHHHHHHH
Q 029263 151 EAFVEFANAEDSKAAMAKDR-MTLGSRYIELFPSSHEEMDEAL 192 (196)
Q Consensus 151 ~afV~F~~~~~A~~Al~~~g-~~l~gr~i~V~~~~~~~~~~~~ 192 (196)
..=|+|.+...|..|....+ ..++++.|+..-.+..++.+++
T Consensus 222 ~l~v~f~~~~~Ad~~~~~P~v~r~d~~tV~~~~~~~~~~~~~~ 264 (270)
T cd08769 222 ELEVEFRDTLMADVVELLPGVERLDGRTVRYVAESYKDAYKAI 264 (270)
T ss_pred EEEEEECCHHHHHHHhcCCCeEEECCEEEEEeCCCHHHHHHHH
Confidence 34589999999999888855 4689999999888888887765
Done!