Query 029263
Match_columns 196
No_of_seqs 119 out of 1395
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 16:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 1.8E-33 6.2E-38 211.4 18.7 163 3-192 24-189 (196)
2 3md3_A Nuclear and cytoplasmic 100.0 1.3E-32 4.3E-37 201.2 19.5 152 3-185 11-166 (166)
3 4f02_A Polyadenylate-binding p 100.0 1.4E-32 4.7E-37 210.1 19.1 157 3-191 26-186 (213)
4 2cjk_A Nuclear polyadenylated 100.0 9.9E-33 3.4E-37 202.4 11.7 150 3-186 14-166 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.5E-31 8.7E-36 194.9 17.0 148 3-183 14-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 4.4E-31 1.5E-35 193.2 18.1 148 3-183 13-167 (167)
7 2qfj_A FBP-interacting repress 100.0 1.4E-31 4.9E-36 203.9 14.5 162 3-186 39-205 (216)
8 2g4b_A Splicing factor U2AF 65 100.0 2.6E-31 8.7E-36 195.7 12.8 149 3-184 15-172 (172)
9 3nmr_A Cugbp ELAV-like family 100.0 2.2E-30 7.4E-35 191.0 17.7 150 3-184 14-175 (175)
10 2yh0_A Splicing factor U2AF 65 100.0 8.1E-31 2.8E-35 197.2 14.3 171 3-186 15-194 (198)
11 1fje_B Nucleolin RBD12, protei 100.0 2.2E-31 7.5E-36 196.9 10.8 148 3-185 24-173 (175)
12 3smz_A Protein raver-1, ribonu 100.0 3.9E-30 1.3E-34 204.1 17.9 158 3-190 106-268 (284)
13 2ghp_A U4/U6 snRNA-associated 100.0 8.4E-30 2.9E-34 202.9 13.3 158 3-186 128-291 (292)
14 2ghp_A U4/U6 snRNA-associated 100.0 9E-29 3.1E-33 196.9 15.8 144 3-187 52-198 (292)
15 3tyt_A Heterogeneous nuclear r 100.0 1.9E-28 6.5E-33 186.2 16.2 175 2-183 15-204 (205)
16 3smz_A Protein raver-1, ribonu 100.0 4.6E-28 1.6E-32 192.1 18.0 141 3-187 33-176 (284)
17 3sde_A Paraspeckle component 1 100.0 2.3E-28 7.8E-33 192.1 15.6 141 3-186 33-179 (261)
18 3pgw_A U1-A; protein-RNA compl 100.0 5E-28 1.7E-32 191.7 16.9 176 3-184 20-281 (282)
19 1qm9_A Polypyrimidine tract-bi 99.9 5.3E-27 1.8E-31 176.7 15.5 174 3-185 15-196 (198)
20 2adc_A Polypyrimidine tract-bi 99.9 1.4E-26 4.6E-31 178.6 14.4 173 3-185 46-227 (229)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.1E-24 3.6E-29 158.8 12.8 141 24-185 6-149 (158)
22 2dha_A FLJ20171 protein; RRM d 99.9 1.9E-23 6.5E-28 146.0 9.3 90 106-195 22-114 (123)
23 2db1_A Heterogeneous nuclear r 99.9 1E-22 3.5E-27 141.5 12.9 91 105-196 15-108 (118)
24 2hgl_A HNRPF protein, heteroge 99.9 1.2E-22 4.2E-27 144.2 11.2 90 105-195 42-134 (136)
25 2i2y_A Fusion protein consists 99.9 8.9E-23 3E-27 147.5 10.2 136 28-185 9-147 (150)
26 2dnn_A RNA-binding protein 12; 99.9 2.3E-22 7.7E-27 137.7 11.3 86 105-192 14-99 (109)
27 2cpy_A RNA-binding protein 12; 99.9 3.5E-22 1.2E-26 137.9 11.9 90 105-194 13-102 (114)
28 2lmi_A GRSF-1, G-rich sequence 99.9 1.3E-22 4.5E-27 138.5 9.4 90 105-195 9-101 (107)
29 4fxv_A ELAV-like protein 1; RN 99.9 4.5E-22 1.5E-26 134.0 10.4 80 105-185 17-98 (99)
30 1wg5_A Heterogeneous nuclear r 99.9 7.1E-23 2.4E-27 139.2 5.9 88 105-192 13-100 (104)
31 1wel_A RNA-binding protein 12; 99.9 7.3E-22 2.5E-26 138.3 10.8 88 105-192 23-110 (124)
32 2hgm_A HNRPF protein, heteroge 99.9 3.5E-22 1.2E-26 139.9 7.0 85 105-189 40-124 (126)
33 1wez_A HnRNP H', FTP-3, hetero 99.9 1.8E-21 6E-26 131.8 8.8 80 105-186 13-92 (102)
34 2lxi_A RNA-binding protein 10; 99.9 4.9E-22 1.7E-26 131.8 5.9 78 108-186 2-83 (91)
35 3s8s_A Histone-lysine N-methyl 99.8 1E-20 3.4E-25 129.8 11.7 82 106-188 5-88 (110)
36 2lkz_A RNA-binding protein 5; 99.8 1E-20 3.4E-25 126.4 9.3 77 108-184 10-93 (95)
37 1s79_A Lupus LA protein; RRM, 99.8 1.2E-20 4.1E-25 127.9 8.3 79 106-185 10-88 (103)
38 2wbr_A GW182, gawky, LD47780P; 99.8 2.9E-20 1E-24 120.8 9.7 80 107-192 7-87 (89)
39 2dgw_A Probable RNA-binding pr 99.8 3.9E-20 1.3E-24 122.4 10.5 79 106-186 9-87 (91)
40 3s7r_A Heterogeneous nuclear r 99.8 4.1E-20 1.4E-24 121.2 10.4 78 105-183 9-87 (87)
41 2do4_A Squamous cell carcinoma 99.8 7.7E-20 2.6E-24 123.1 11.9 81 105-186 15-96 (100)
42 3md1_A Nuclear and cytoplasmic 99.8 3.5E-20 1.2E-24 120.4 9.2 78 108-186 2-81 (83)
43 2cqc_A Arginine/serine-rich sp 99.8 8.4E-20 2.9E-24 121.6 11.3 81 104-185 12-94 (95)
44 2hgn_A Heterogeneous nuclear r 99.8 1.4E-21 4.9E-26 139.2 2.4 83 106-190 45-127 (139)
45 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.6E-20 1.9E-24 120.5 9.9 80 106-186 5-86 (87)
46 3ulh_A THO complex subunit 4; 99.8 7.1E-20 2.4E-24 124.7 10.5 80 104-184 26-106 (107)
47 2dgs_A DAZ-associated protein 99.8 8E-20 2.8E-24 122.7 10.3 81 105-186 8-89 (99)
48 2ywk_A Putative RNA-binding pr 99.8 6.9E-20 2.4E-24 122.1 9.9 79 105-184 14-93 (95)
49 3ns6_A Eukaryotic translation 99.8 1.7E-20 5.9E-25 126.5 6.9 83 106-189 5-96 (100)
50 2dng_A Eukaryotic translation 99.8 1.3E-19 4.4E-24 122.6 11.2 80 105-186 13-93 (103)
51 3p5t_L Cleavage and polyadenyl 99.8 1.7E-20 6E-25 124.0 6.6 79 108-187 2-84 (90)
52 2la6_A RNA-binding protein FUS 99.8 1.6E-19 5.6E-24 121.2 11.3 79 105-184 11-99 (99)
53 1whw_A Hypothetical protein ri 99.8 9.3E-20 3.2E-24 122.4 10.0 81 105-186 6-88 (99)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.3E-20 2.2E-24 119.7 8.9 78 106-184 6-85 (85)
55 2dnh_A Bruno-like 5, RNA bindi 99.8 1.8E-19 6.1E-24 122.3 11.1 80 106-186 14-97 (105)
56 2e5h_A Zinc finger CCHC-type a 99.8 1.9E-19 6.5E-24 119.7 10.9 79 105-184 14-94 (94)
57 2dgo_A Cytotoxic granule-assoc 99.8 2.7E-19 9.1E-24 123.4 11.8 82 104-186 12-95 (115)
58 2cq4_A RNA binding motif prote 99.8 1.1E-19 3.9E-24 125.1 9.9 84 105-189 23-107 (114)
59 2cq0_A Eukaryotic translation 99.8 1.8E-19 6.2E-24 121.9 10.7 81 105-186 13-95 (103)
60 3n9u_C Cleavage and polyadenyl 99.8 1.3E-19 4.5E-24 131.6 10.6 84 106-190 54-141 (156)
61 2mss_A Protein (musashi1); RNA 99.8 4.1E-20 1.4E-24 117.9 6.9 74 109-183 1-75 (75)
62 3ucg_A Polyadenylate-binding p 99.8 1.2E-19 4.1E-24 119.4 9.4 79 106-185 5-84 (89)
63 2d9p_A Polyadenylate-binding p 99.8 1.9E-19 6.4E-24 121.8 10.5 80 105-186 13-93 (103)
64 1x5t_A Splicing factor 3B subu 99.8 1.4E-19 4.7E-24 120.8 9.7 80 106-186 4-86 (96)
65 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.2E-20 2.5E-24 134.2 9.1 84 105-189 70-155 (165)
66 1x5u_A Splicing factor 3B subu 99.8 1.5E-19 5.1E-24 122.7 10.0 81 105-186 13-95 (105)
67 2cqp_A RNA-binding protein 12; 99.8 3.1E-19 1.1E-23 119.6 11.4 79 106-185 14-94 (98)
68 2cpz_A CUG triplet repeat RNA- 99.8 3.9E-19 1.3E-23 122.6 12.0 81 105-186 23-105 (115)
69 4f25_A Polyadenylate-binding p 99.8 1.1E-19 3.8E-24 125.5 9.2 78 107-186 5-83 (115)
70 2dnz_A Probable RNA-binding pr 99.8 2.1E-19 7.2E-24 119.7 9.9 80 106-186 4-85 (95)
71 1wi8_A EIF-4B, eukaryotic tran 99.8 2.1E-19 7.1E-24 121.8 10.0 79 106-186 14-94 (104)
72 2cq3_A RNA-binding protein 9; 99.8 4.7E-19 1.6E-23 119.8 11.7 81 104-186 12-93 (103)
73 2fy1_A RNA-binding motif prote 99.8 1.9E-19 6.6E-24 124.5 10.0 80 106-186 6-86 (116)
74 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.8E-19 6E-24 121.7 9.5 81 105-186 10-92 (102)
75 2do0_A HnRNP M, heterogeneous 99.8 5E-19 1.7E-23 121.8 11.6 80 105-185 13-93 (114)
76 2kt5_A RNA and export factor-b 99.8 9.3E-19 3.2E-23 122.3 13.2 82 104-186 32-114 (124)
77 2x1f_A MRNA 3'-END-processing 99.8 2E-19 6.9E-24 120.1 9.3 80 107-187 2-83 (96)
78 2jrs_A RNA-binding protein 39; 99.8 3.3E-19 1.1E-23 121.8 10.5 82 104-186 23-106 (108)
79 2ek1_A RNA-binding protein 12; 99.8 2.6E-19 8.9E-24 119.2 9.6 79 106-185 14-94 (95)
80 1x5s_A Cold-inducible RNA-bind 99.8 2E-19 6.8E-24 121.4 8.8 81 105-186 10-92 (102)
81 1x4h_A RNA-binding protein 28; 99.8 4E-19 1.4E-23 121.7 10.4 81 105-186 13-101 (111)
82 2dh8_A DAZ-associated protein 99.8 1.6E-19 5.6E-24 122.5 8.2 83 104-187 13-96 (105)
83 2dgv_A HnRNP M, heterogeneous 99.8 3.3E-19 1.1E-23 118.0 9.5 79 105-185 6-85 (92)
84 2lea_A Serine/arginine-rich sp 99.8 9E-20 3.1E-24 129.5 7.1 80 105-185 45-126 (135)
85 1p27_B RNA-binding protein 8A; 99.8 2.8E-19 9.6E-24 121.5 9.3 80 105-185 21-102 (106)
86 2cqg_A TDP-43, TAR DNA-binding 99.8 7.4E-19 2.5E-23 118.8 11.3 80 105-186 13-93 (103)
87 2dnm_A SRP46 splicing factor; 99.8 2E-19 6.9E-24 121.6 8.4 80 105-185 11-92 (103)
88 1p1t_A Cleavage stimulation fa 99.8 1.7E-19 5.8E-24 122.1 7.8 85 106-191 7-93 (104)
89 2cph_A RNA binding motif prote 99.8 5.2E-19 1.8E-23 120.3 10.1 81 105-186 13-97 (107)
90 2cqi_A Nucleolysin TIAR; RNA r 99.8 8.5E-19 2.9E-23 118.5 11.1 80 105-186 13-93 (103)
91 1iqt_A AUF1, heterogeneous nuc 99.8 6.6E-20 2.3E-24 116.9 5.2 74 109-183 1-75 (75)
92 1x4b_A Heterogeneous nuclear r 99.8 5.6E-19 1.9E-23 122.0 10.2 80 106-186 26-106 (116)
93 2dhg_A TRNA selenocysteine ass 99.8 2.6E-19 9.1E-24 121.2 8.3 80 106-186 8-90 (104)
94 2cpe_A RNA-binding protein EWS 99.8 7.7E-19 2.6E-23 120.7 10.8 82 105-186 13-103 (113)
95 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.4E-20 2.5E-24 123.3 5.4 80 105-186 17-98 (100)
96 2rs2_A Musashi-1, RNA-binding 99.8 3.8E-19 1.3E-23 121.7 8.9 81 105-186 23-104 (109)
97 2m2b_A RNA-binding protein 10; 99.8 2.2E-19 7.5E-24 126.8 7.7 81 105-186 21-108 (131)
98 2kxn_B Transformer-2 protein h 99.8 2.4E-19 8.2E-24 126.3 7.9 80 105-185 44-125 (129)
99 2err_A Ataxin-2-binding protei 99.8 4.7E-19 1.6E-23 121.2 9.1 81 104-186 26-107 (109)
100 2khc_A Testis-specific RNP-typ 99.8 1E-18 3.5E-23 121.0 10.9 79 104-183 37-117 (118)
101 2cqd_A RNA-binding region cont 99.8 1.4E-18 4.7E-23 120.0 11.4 79 105-185 15-95 (116)
102 2dgp_A Bruno-like 4, RNA bindi 99.8 4.6E-19 1.6E-23 120.4 8.8 81 105-186 11-96 (106)
103 2div_A TRNA selenocysteine ass 99.8 7.3E-19 2.5E-23 118.0 9.7 81 105-185 7-93 (99)
104 1oo0_B CG8781-PA, drosophila Y 99.8 4.8E-19 1.7E-23 121.2 8.8 80 105-185 24-105 (110)
105 2cpf_A RNA binding motif prote 99.8 4.9E-19 1.7E-23 118.6 8.6 80 106-186 4-88 (98)
106 2dgx_A KIAA0430 protein; RRM d 99.8 7.1E-19 2.4E-23 117.6 9.3 77 106-185 8-89 (96)
107 2fc9_A NCL protein; structure 99.8 1.3E-18 4.3E-23 117.3 10.3 78 105-186 13-91 (101)
108 3r27_A HnRNP L, heterogeneous 99.8 6.3E-19 2.2E-23 118.1 8.4 76 105-186 19-97 (100)
109 4a8x_A RNA-binding protein wit 99.8 4.5E-19 1.5E-23 116.3 7.2 79 106-185 3-84 (88)
110 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.6E-19 1.2E-23 114.0 6.5 73 109-183 2-76 (77)
111 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.1E-18 7.1E-23 122.7 11.1 79 104-183 60-140 (140)
112 2jwn_A Embryonic polyadenylate 99.8 8.3E-19 2.8E-23 122.5 8.5 79 106-185 35-114 (124)
113 2nlw_A Eukaryotic translation 99.8 6.7E-19 2.3E-23 119.6 7.6 78 106-185 14-99 (105)
114 1sjq_A Polypyrimidine tract-bi 99.8 4.7E-19 1.6E-23 119.8 6.6 76 105-186 14-92 (105)
115 1x5o_A RNA binding motif, sing 99.8 5.6E-18 1.9E-22 116.5 12.3 80 105-185 23-111 (114)
116 3q2s_C Cleavage and polyadenyl 99.8 1.7E-18 5.7E-23 133.3 10.3 85 106-191 67-155 (229)
117 1u6f_A Tcubp1, RNA-binding pro 99.8 2E-18 6.7E-23 122.9 9.8 82 104-186 39-122 (139)
118 2krb_A Eukaryotic translation 99.8 3.4E-19 1.2E-23 115.4 5.1 71 108-180 2-80 (81)
119 2xs2_A Deleted in azoospermia- 99.8 6.7E-19 2.3E-23 118.8 6.7 80 105-186 7-86 (102)
120 2fc8_A NCL protein; structure 99.8 4.1E-18 1.4E-22 114.9 10.4 78 105-186 13-92 (102)
121 2cpi_A CCR4-NOT transcription 99.8 1.4E-18 4.8E-23 119.2 8.2 80 106-186 14-101 (111)
122 3ex7_B RNA-binding protein 8A; 99.8 1.8E-18 6.1E-23 121.1 8.8 80 105-185 20-101 (126)
123 1x4e_A RNA binding motif, sing 99.8 2.8E-19 9.5E-24 116.7 4.3 78 106-184 4-83 (85)
124 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.1E-18 1.4E-22 123.7 10.5 80 105-185 37-118 (156)
125 2cq1_A PTB-like protein L; RRM 99.8 5.1E-18 1.7E-22 114.4 10.2 77 105-187 13-92 (101)
126 1x4a_A Splicing factor, argini 99.8 1.1E-17 3.8E-22 114.2 11.9 78 105-185 20-98 (109)
127 4f25_A Polyadenylate-binding p 99.8 1.8E-18 6.1E-23 119.4 8.0 97 3-123 16-113 (115)
128 1fj7_A Nucleolin RBD1, protein 99.8 5.1E-19 1.8E-23 119.2 4.7 80 106-186 16-95 (101)
129 2ad9_A Polypyrimidine tract-bi 99.8 2.6E-18 9E-23 118.8 8.4 77 105-187 29-108 (119)
130 2ki2_A SS-DNA binding protein 99.8 4.9E-19 1.7E-23 116.8 4.4 79 108-188 2-82 (90)
131 3pgw_S U1-70K; protein-RNA com 99.8 1.1E-18 3.8E-23 146.0 7.5 80 106-186 101-182 (437)
132 2jvr_A Nucleolar protein 3; RN 99.8 3E-18 1E-22 117.4 8.2 77 106-186 27-105 (111)
133 2dis_A Unnamed protein product 99.7 3.1E-18 1.1E-22 116.9 7.8 80 106-186 7-92 (109)
134 2a3j_A U1 small nuclear ribonu 99.7 2.7E-18 9.4E-23 120.4 7.5 79 106-187 28-111 (127)
135 1x4d_A Matrin 3; structural ge 99.7 3.1E-18 1.1E-22 115.5 7.4 74 106-185 14-91 (102)
136 2e5j_A Methenyltetrahydrofolat 99.7 1.1E-17 3.9E-22 111.8 10.1 77 105-186 17-94 (97)
137 1x4c_A Splicing factor, argini 99.7 1.4E-17 4.9E-22 113.5 10.5 74 106-186 14-93 (108)
138 2f3j_A RNA and export factor b 99.7 1.7E-17 5.7E-22 122.9 11.4 81 105-186 86-167 (177)
139 3lqv_A PRE-mRNA branch site pr 99.7 1.4E-17 4.6E-22 114.8 10.1 78 106-186 7-85 (115)
140 2cpx_A Hypothetical protein FL 99.7 8.1E-18 2.8E-22 115.9 9.0 79 105-186 23-105 (115)
141 1wex_A Hypothetical protein (r 99.7 8.3E-18 2.8E-22 114.0 8.8 76 105-186 13-91 (104)
142 2dnq_A RNA-binding protein 4B; 99.7 1.5E-17 5E-22 109.7 9.2 74 105-186 6-80 (90)
143 2cpj_A Non-POU domain-containi 99.7 1.6E-17 5.5E-22 111.4 9.4 76 105-186 13-89 (99)
144 1why_A Hypothetical protein ri 99.7 2.4E-17 8.2E-22 110.2 10.1 76 105-186 15-93 (97)
145 4f02_A Polyadenylate-binding p 99.7 1.5E-17 5.3E-22 126.5 10.2 82 106-188 14-97 (213)
146 2ytc_A PRE-mRNA-splicing facto 99.7 2.4E-17 8.1E-22 107.4 9.7 74 105-184 10-85 (85)
147 1fjc_A Nucleolin RBD2, protein 99.7 8.6E-18 2.9E-22 112.1 7.5 76 105-185 14-90 (96)
148 1nu4_A U1A RNA binding domain; 99.7 2.1E-18 7.2E-23 115.2 4.4 78 106-186 7-89 (97)
149 1l3k_A Heterogeneous nuclear r 99.7 2.4E-17 8.1E-22 123.2 10.6 82 105-187 11-93 (196)
150 2j8a_A Histone-lysine N-methyl 99.7 2.2E-17 7.5E-22 114.3 9.4 80 108-188 3-98 (136)
151 2la4_A Nuclear and cytoplasmic 99.7 1.7E-17 5.7E-22 111.7 8.1 74 106-185 26-100 (101)
152 2jvo_A Nucleolar protein 3; nu 99.7 2.8E-17 9.6E-22 112.1 9.1 74 105-186 29-103 (108)
153 2voo_A Lupus LA protein; RNA-b 99.7 3E-17 1E-21 123.2 10.1 79 106-185 108-186 (193)
154 1x4f_A Matrin 3; structural ge 99.7 2.2E-17 7.6E-22 113.0 8.4 76 104-185 22-101 (112)
155 2xnq_A Nuclear polyadenylated 99.7 4.7E-17 1.6E-21 108.9 9.6 73 105-185 20-94 (97)
156 2cqh_A IGF-II mRNA-binding pro 99.7 2.3E-17 7.8E-22 109.4 7.9 75 106-186 7-83 (93)
157 1x4g_A Nucleolysin TIAR; struc 99.7 2.7E-17 9.1E-22 112.3 8.4 75 106-186 24-99 (109)
158 2hvz_A Splicing factor, argini 99.7 1.5E-17 5E-22 112.0 7.0 73 109-186 2-75 (101)
159 1fxl_A Paraneoplastic encephal 99.7 4.9E-17 1.7E-21 118.2 10.3 78 107-185 2-81 (167)
160 2dgt_A RNA-binding protein 30; 99.7 8E-17 2.7E-21 106.5 10.4 74 105-186 8-82 (92)
161 2cpd_A Apobec-1 stimulating pr 99.7 9.5E-17 3.3E-21 107.6 10.7 75 104-186 12-89 (99)
162 3egn_A RNA-binding protein 40; 99.7 2.2E-17 7.7E-22 118.0 8.1 79 106-185 44-129 (143)
163 2lcw_A RNA-binding protein FUS 99.5 6.9E-19 2.3E-23 121.6 0.0 81 106-187 6-96 (116)
164 2dgu_A Heterogeneous nuclear r 99.7 4.3E-17 1.5E-21 110.2 8.8 74 105-186 9-83 (103)
165 1wg1_A KIAA1579 protein, homol 99.7 4.4E-17 1.5E-21 107.0 8.5 73 106-185 4-77 (88)
166 3md3_A Nuclear and cytoplasmic 99.7 4.6E-17 1.6E-21 118.2 8.6 77 108-185 1-78 (166)
167 3d2w_A TAR DNA-binding protein 99.7 5.2E-17 1.8E-21 107.0 8.0 77 105-187 9-85 (89)
168 1whx_A Hypothetical protein ri 99.7 2.6E-17 9E-22 112.8 6.7 74 106-185 9-83 (111)
169 2dnp_A RNA-binding protein 14; 99.7 7.2E-17 2.5E-21 106.3 8.6 74 105-186 7-81 (90)
170 2e5g_A U6 snRNA-specific termi 99.7 6.4E-17 2.2E-21 107.5 8.4 76 106-186 7-82 (94)
171 1wf1_A RNA-binding protein RAL 99.7 1E-16 3.5E-21 109.5 9.4 72 106-185 26-99 (110)
172 2pe8_A Splicing factor 45; RRM 99.7 2.2E-16 7.4E-21 107.1 10.7 84 106-190 7-98 (105)
173 2hzc_A Splicing factor U2AF 65 99.7 7.1E-17 2.4E-21 105.5 8.0 71 105-181 4-85 (87)
174 1b7f_A Protein (SXL-lethal pro 99.7 6.2E-17 2.1E-21 118.0 8.4 78 107-185 3-82 (168)
175 2kvi_A Nuclear polyadenylated 99.7 4.9E-17 1.7E-21 108.5 6.7 73 105-185 8-82 (96)
176 2e44_A Insulin-like growth fac 99.7 7.1E-17 2.4E-21 107.6 6.9 78 106-187 14-93 (96)
177 2dnn_A RNA-binding protein 12; 99.7 1.9E-16 6.6E-21 108.1 9.0 72 3-75 27-99 (109)
178 1x5p_A Negative elongation fac 99.7 4.3E-16 1.5E-20 104.0 10.2 74 105-186 13-87 (97)
179 2dha_A FLJ20171 protein; RRM d 99.7 1.9E-16 6.5E-21 110.3 7.9 76 3-78 34-114 (123)
180 2cjk_A Nuclear polyadenylated 99.7 1.9E-16 6.5E-21 115.3 8.1 81 106-188 2-83 (167)
181 3beg_B Splicing factor, argini 99.7 3.1E-17 1.1E-21 113.2 3.7 74 106-186 15-94 (115)
182 2dnl_A Cytoplasmic polyadenyla 99.7 2.7E-16 9.3E-21 108.2 7.7 61 106-168 7-71 (114)
183 1wf0_A TDP-43, TAR DNA-binding 99.6 1.4E-16 4.8E-21 104.5 5.6 75 106-186 4-78 (88)
184 1sjr_A Polypyrimidine tract-bi 99.6 8.1E-16 2.8E-20 111.6 9.8 76 107-186 46-124 (164)
185 2db1_A Heterogeneous nuclear r 99.6 1.1E-15 3.7E-20 105.8 10.1 75 3-77 28-106 (118)
186 2cq2_A Hypothetical protein LO 99.6 2.2E-16 7.5E-21 108.2 6.4 76 105-186 23-106 (114)
187 3zzy_A Polypyrimidine tract-bi 99.6 1E-15 3.5E-20 107.2 9.6 75 107-186 28-106 (130)
188 2qfj_A FBP-interacting repress 99.6 4.8E-16 1.7E-20 117.7 8.5 80 106-186 27-108 (216)
189 2e5i_A Heterogeneous nuclear r 99.6 4.8E-15 1.6E-19 103.2 12.7 73 108-186 26-102 (124)
190 2diu_A KIAA0430 protein; struc 99.6 6.8E-16 2.3E-20 101.2 7.8 69 107-185 8-83 (96)
191 1fje_B Nucleolin RBD12, protei 99.6 1.3E-16 4.5E-21 117.2 4.6 80 105-185 11-90 (175)
192 3tyt_A Heterogeneous nuclear r 99.6 8.6E-16 2.9E-20 116.3 8.8 75 106-185 3-79 (205)
193 2hgl_A HNRPF protein, heteroge 99.6 1.2E-15 4.1E-20 108.1 8.7 73 3-75 55-131 (136)
194 3nmr_A Cugbp ELAV-like family 99.6 1.3E-15 4.4E-20 111.5 8.7 79 106-185 2-87 (175)
195 2cpy_A RNA-binding protein 12; 99.6 2.7E-15 9.3E-20 103.1 8.9 74 3-76 26-101 (114)
196 3pgw_A U1-A; protein-RNA compl 99.6 2.7E-15 9.3E-20 118.3 10.0 79 105-186 7-90 (282)
197 4fxv_A ELAV-like protein 1; RN 99.6 2.3E-15 7.8E-20 101.0 8.1 65 3-67 30-97 (99)
198 3v4m_A Splicing factor U2AF 65 99.6 2.6E-15 8.8E-20 101.8 8.4 83 106-189 4-100 (105)
199 2bz2_A Negative elongation fac 99.6 3.8E-15 1.3E-19 103.5 9.1 76 105-188 37-113 (121)
200 1wg5_A Heterogeneous nuclear r 99.6 8.6E-16 2.9E-20 104.0 5.3 68 3-70 26-95 (104)
201 1wez_A HnRNP H', FTP-3, hetero 99.6 1.1E-15 3.8E-20 103.1 5.8 64 3-67 26-90 (102)
202 2lmi_A GRSF-1, G-rich sequence 99.6 1.8E-15 6E-20 102.9 6.1 75 3-77 22-100 (107)
203 2yh0_A Splicing factor U2AF 65 99.6 5.1E-16 1.7E-20 116.1 3.6 80 106-185 3-87 (198)
204 3s8s_A Histone-lysine N-methyl 99.6 8.5E-15 2.9E-19 100.1 9.3 68 3-70 17-87 (110)
205 1wel_A RNA-binding protein 12; 99.6 2.4E-15 8.1E-20 104.9 6.5 76 3-78 36-113 (124)
206 2dit_A HIV TAT specific factor 99.6 2.3E-14 8E-19 98.1 11.3 78 105-186 13-102 (112)
207 2hgm_A HNRPF protein, heteroge 99.6 1.3E-15 4.5E-20 106.4 4.6 68 3-71 53-123 (126)
208 2g4b_A Splicing factor U2AF 65 99.6 1.2E-15 4.1E-20 111.6 4.3 80 106-185 3-87 (172)
209 2adc_A Polypyrimidine tract-bi 99.6 5.3E-15 1.8E-19 113.6 7.4 76 105-185 32-109 (229)
210 1jmt_A Splicing factor U2AF 35 99.6 1.6E-15 5.4E-20 102.7 3.7 71 112-183 20-103 (104)
211 3sde_A Paraspeckle component 1 99.5 2.1E-14 7.1E-19 112.4 9.9 74 105-184 20-94 (261)
212 3u1l_A PRE-mRNA-splicing facto 99.5 8.4E-15 2.9E-19 112.8 7.5 78 104-187 131-230 (240)
213 3lqv_A PRE-mRNA branch site pr 99.5 1.3E-14 4.3E-19 99.7 7.7 92 3-135 19-111 (115)
214 3ue2_A Poly(U)-binding-splicin 99.5 2.3E-14 7.9E-19 99.0 8.9 83 106-189 19-112 (118)
215 1s79_A Lupus LA protein; RRM, 99.5 8.1E-15 2.8E-19 99.0 6.3 65 3-67 22-87 (103)
216 1qm9_A Polypyrimidine tract-bi 99.5 7.3E-15 2.5E-19 110.0 6.4 74 107-185 3-78 (198)
217 3p5t_L Cleavage and polyadenyl 99.5 8.9E-15 3E-19 96.3 5.9 66 3-68 12-82 (90)
218 2wbr_A GW182, gawky, LD47780P; 99.5 2.5E-14 8.6E-19 92.8 7.7 67 3-73 18-85 (89)
219 2dgw_A Probable RNA-binding pr 99.5 2.2E-14 7.5E-19 94.4 7.4 64 3-67 21-85 (91)
220 2mss_A Protein (musashi1); RNA 99.5 1.2E-14 4.1E-19 92.2 5.5 63 3-65 10-74 (75)
221 2lxi_A RNA-binding protein 10; 99.5 6.1E-15 2.1E-19 97.4 4.2 65 3-67 12-81 (91)
222 3s7r_A Heterogeneous nuclear r 99.5 3.7E-14 1.3E-18 92.5 7.9 63 3-65 22-86 (87)
223 2krb_A Eukaryotic translation 99.5 7.9E-15 2.7E-19 94.6 4.5 59 5-63 20-80 (81)
224 2hvz_A Splicing factor, argini 99.5 5.2E-14 1.8E-18 94.4 8.5 62 3-67 11-73 (101)
225 3bs9_A Nucleolysin TIA-1 isofo 99.5 6E-14 2E-18 91.4 8.3 66 3-68 17-85 (87)
226 2hgn_A Heterogeneous nuclear r 99.5 3.1E-15 1.1E-19 106.3 2.1 66 3-69 57-123 (139)
227 3ns6_A Eukaryotic translation 99.5 2.9E-14 9.9E-19 95.7 6.6 68 3-70 23-94 (100)
228 2do4_A Squamous cell carcinoma 99.5 7.8E-14 2.7E-18 93.4 8.7 65 3-67 28-94 (100)
229 3md1_A Nuclear and cytoplasmic 99.5 5.3E-14 1.8E-18 90.9 7.6 65 3-67 12-79 (83)
230 3ucg_A Polyadenylate-binding p 99.5 6.1E-14 2.1E-18 91.8 7.4 65 3-67 17-83 (89)
231 2dgs_A DAZ-associated protein 99.5 6.2E-14 2.1E-18 93.7 7.6 65 3-67 21-87 (99)
232 2lkz_A RNA-binding protein 5; 99.5 3.4E-14 1.2E-18 94.5 6.1 65 3-67 20-93 (95)
233 2pe8_A Splicing factor 45; RRM 99.5 1.5E-13 5E-18 93.1 9.0 68 4-71 25-96 (105)
234 2ywk_A Putative RNA-binding pr 99.5 7.6E-14 2.6E-18 92.5 7.5 65 3-67 27-93 (95)
235 3ulh_A THO complex subunit 4; 99.5 1.2E-13 4.2E-18 93.5 8.1 65 3-67 40-106 (107)
236 2nlw_A Eukaryotic translation 99.5 4.3E-14 1.5E-18 95.7 5.4 63 5-67 34-98 (105)
237 1whw_A Hypothetical protein ri 99.5 1.1E-13 3.8E-18 92.4 7.2 65 3-67 19-86 (99)
238 2la6_A RNA-binding protein FUS 99.5 1.9E-13 6.4E-18 91.4 8.3 64 3-66 24-98 (99)
239 3n9u_C Cleavage and polyadenyl 99.5 1.7E-13 5.9E-18 99.2 8.6 69 3-71 66-139 (156)
240 2cqc_A Arginine/serine-rich sp 99.5 2.1E-13 7.1E-18 90.3 8.2 65 3-67 26-93 (95)
241 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.2E-13 4E-18 89.6 6.8 64 3-66 18-84 (85)
242 2dnz_A Probable RNA-binding pr 99.5 2E-13 6.7E-18 90.5 8.0 65 3-67 16-83 (95)
243 2fy1_A RNA-binding motif prote 99.5 1.3E-13 4.5E-18 95.0 7.3 65 3-67 18-84 (116)
244 1iqt_A AUF1, heterogeneous nuc 99.5 3E-14 1E-18 90.3 3.7 63 3-65 10-74 (75)
245 2dnh_A Bruno-like 5, RNA bindi 99.5 1.9E-13 6.6E-18 92.2 7.7 65 3-67 26-95 (105)
246 2cq4_A RNA binding motif prote 99.5 1.2E-13 3.9E-18 94.8 6.5 68 3-70 36-105 (114)
247 2ek1_A RNA-binding protein 12; 99.5 1.4E-13 4.9E-18 91.1 6.7 65 3-67 26-93 (95)
248 2do0_A HnRNP M, heterogeneous 99.5 3E-13 1E-17 92.6 8.5 65 3-67 26-92 (114)
249 3s6e_A RNA-binding protein 39; 99.5 6.8E-13 2.3E-17 91.0 10.2 82 106-191 6-98 (114)
250 2dgv_A HnRNP M, heterogeneous 99.4 1.5E-13 5E-18 90.5 6.6 65 3-67 19-84 (92)
251 2e5h_A Zinc finger CCHC-type a 99.4 2.9E-13 1E-17 89.4 8.0 64 3-66 27-93 (94)
252 2cq0_A Eukaryotic translation 99.4 2.2E-13 7.5E-18 91.7 7.4 65 3-67 26-93 (103)
253 2jwn_A Embryonic polyadenylate 99.4 2.4E-13 8.2E-18 94.5 7.7 65 3-67 47-113 (124)
254 2rs2_A Musashi-1, RNA-binding 99.4 2.4E-13 8.2E-18 92.6 7.5 65 3-67 36-102 (109)
255 2cpz_A CUG triplet repeat RNA- 99.4 2.1E-13 7E-18 93.7 7.2 65 3-67 36-103 (115)
256 2x1f_A MRNA 3'-END-processing 99.4 2.1E-13 7.1E-18 90.6 7.0 67 3-69 13-82 (96)
257 1x4b_A Heterogeneous nuclear r 99.4 2.3E-13 8E-18 93.5 7.4 65 3-67 38-104 (116)
258 2dng_A Eukaryotic translation 99.4 2.7E-13 9.3E-18 91.2 7.5 64 3-67 26-91 (103)
259 1x5u_A Splicing factor 3B subu 99.4 1.6E-13 5.5E-18 92.6 6.4 65 3-67 26-93 (105)
260 2d9p_A Polyadenylate-binding p 99.4 3E-13 1E-17 91.0 7.8 64 3-67 26-91 (103)
261 2dgo_A Cytotoxic granule-assoc 99.4 3.4E-13 1.2E-17 92.5 8.2 65 3-67 26-93 (115)
262 2jrs_A RNA-binding protein 39; 99.4 2.2E-13 7.5E-18 92.7 7.0 65 3-67 37-104 (108)
263 1p27_B RNA-binding protein 8A; 99.4 4E-13 1.4E-17 90.8 8.2 65 3-67 34-101 (106)
264 1p1t_A Cleavage stimulation fa 99.4 3E-13 1E-17 91.0 7.6 68 3-70 19-89 (104)
265 2cqp_A RNA-binding protein 12; 99.4 2.1E-13 7.1E-18 90.9 6.7 65 3-67 26-93 (98)
266 2kt5_A RNA and export factor-b 99.4 4E-13 1.4E-17 93.4 8.4 65 3-67 46-112 (124)
267 2dh8_A DAZ-associated protein 99.4 1.2E-13 4E-18 93.4 5.2 65 3-67 27-93 (105)
268 2cq3_A RNA-binding protein 9; 99.4 5.2E-13 1.8E-17 89.8 8.4 65 3-67 26-91 (103)
269 1x5t_A Splicing factor 3B subu 99.4 3.3E-13 1.1E-17 89.5 7.1 65 3-67 16-84 (96)
270 1wi8_A EIF-4B, eukaryotic tran 99.4 2.9E-13 9.8E-18 91.3 6.8 64 3-67 26-92 (104)
271 2err_A Ataxin-2-binding protei 99.4 2.8E-13 9.4E-18 92.3 6.8 65 3-67 40-105 (109)
272 2cqb_A Peptidyl-prolyl CIS-tra 99.4 2.4E-13 8.3E-18 91.2 6.4 65 3-67 23-90 (102)
273 2cqi_A Nucleolysin TIAR; RNA r 99.4 5.1E-13 1.7E-17 89.8 7.9 65 3-67 26-91 (103)
274 1jmt_A Splicing factor U2AF 35 99.4 2.5E-13 8.6E-18 91.8 6.3 61 6-66 40-103 (104)
275 2j76_E EIF-4B, EIF4B, eukaryot 99.4 9.1E-14 3.1E-18 93.2 4.1 64 3-67 30-96 (100)
276 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.4E-12 4.7E-17 87.4 9.8 74 107-186 10-90 (100)
277 2cph_A RNA binding motif prote 99.4 4.5E-13 1.5E-17 90.6 7.4 65 3-67 26-95 (107)
278 3v4m_A Splicing factor U2AF 65 99.4 5.8E-13 2E-17 90.1 7.7 67 5-71 28-99 (105)
279 1uaw_A Mouse-musashi-1; RNP-ty 99.4 2.2E-13 7.6E-18 86.6 5.4 64 3-66 11-76 (77)
280 1x5s_A Cold-inducible RNA-bind 99.4 2.7E-13 9.3E-18 91.0 5.9 65 3-67 23-90 (102)
281 2dnm_A SRP46 splicing factor; 99.4 2.4E-13 8E-18 91.5 5.6 65 3-67 24-91 (103)
282 2dhg_A TRNA selenocysteine ass 99.4 2.2E-13 7.7E-18 91.7 5.5 65 3-67 20-88 (104)
283 2cqg_A TDP-43, TAR DNA-binding 99.4 7.9E-13 2.7E-17 88.9 8.2 64 3-67 26-91 (103)
284 1oo0_B CG8781-PA, drosophila Y 99.4 5.2E-13 1.8E-17 90.9 7.0 65 3-67 37-104 (110)
285 1x4h_A RNA-binding protein 28; 99.4 5.4E-13 1.9E-17 90.8 7.1 65 3-67 26-99 (111)
286 2kxn_B Transformer-2 protein h 99.4 4.2E-13 1.4E-17 94.2 6.6 65 3-67 57-124 (129)
287 2cpf_A RNA binding motif prote 99.4 5.4E-13 1.8E-17 88.9 6.7 65 3-67 16-86 (98)
288 1u6f_A Tcubp1, RNA-binding pro 99.4 6.5E-13 2.2E-17 94.1 7.3 65 3-67 53-120 (139)
289 1x4e_A RNA binding motif, sing 99.4 1.8E-13 6.2E-18 88.8 4.0 62 3-64 16-80 (85)
290 2xs2_A Deleted in azoospermia- 99.4 2.6E-13 8.9E-18 91.1 4.9 64 3-67 20-84 (102)
291 2dgp_A Bruno-like 4, RNA bindi 99.4 4.2E-13 1.4E-17 90.7 5.9 65 3-67 24-94 (106)
292 2div_A TRNA selenocysteine ass 99.4 4.5E-13 1.5E-17 89.4 6.0 65 3-67 20-92 (99)
293 2jvr_A Nucleolar protein 3; RN 99.4 6E-13 2.1E-17 90.9 6.4 63 3-67 39-103 (111)
294 4a8x_A RNA-binding protein wit 99.4 4.4E-13 1.5E-17 87.4 5.5 65 3-67 15-83 (88)
295 2khc_A Testis-specific RNP-typ 99.4 4E-13 1.4E-17 92.6 5.4 64 3-66 51-117 (118)
296 2cpe_A RNA-binding protein EWS 99.4 7E-13 2.4E-17 90.7 6.6 65 3-67 26-101 (113)
297 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.2E-12 4E-17 87.7 7.4 61 3-67 28-88 (100)
298 3r27_A HnRNP L, heterogeneous 99.4 1.3E-12 4.4E-17 87.3 7.6 62 2-67 31-95 (100)
299 1fj7_A Nucleolin RBD1, protein 99.4 9.5E-14 3.3E-18 93.1 1.9 65 3-67 28-93 (101)
300 2cpi_A CCR4-NOT transcription 99.4 9.8E-13 3.4E-17 89.8 7.0 65 3-67 26-99 (111)
301 1x4a_A Splicing factor, argini 99.4 1.4E-12 4.9E-17 88.6 7.8 64 3-67 33-97 (109)
302 2j8a_A Histone-lysine N-methyl 99.4 6.9E-13 2.4E-17 91.8 6.1 67 3-69 17-96 (136)
303 3q2s_C Cleavage and polyadenyl 99.4 8.8E-13 3E-17 101.3 7.3 69 3-71 79-152 (229)
304 2dit_A HIV TAT specific factor 99.4 1.4E-12 4.9E-17 89.1 7.6 61 5-67 39-100 (112)
305 2ki2_A SS-DNA binding protein 99.4 1.9E-13 6.6E-18 89.6 3.0 66 3-69 12-80 (90)
306 1x5o_A RNA binding motif, sing 99.4 1.9E-12 6.3E-17 88.7 7.9 65 3-67 36-110 (114)
307 2a3j_A U1 small nuclear ribonu 99.4 1E-12 3.6E-17 91.8 6.7 64 4-68 41-109 (127)
308 2fc9_A NCL protein; structure 99.4 1.2E-12 4E-17 87.7 6.6 63 3-67 26-89 (101)
309 3s6e_A RNA-binding protein 39; 99.4 5.5E-12 1.9E-16 86.5 9.8 69 5-75 30-99 (114)
310 1h2v_Z 20 kDa nuclear CAP bind 99.4 2.2E-12 7.5E-17 93.2 8.2 65 3-67 50-117 (156)
311 1x5p_A Negative elongation fac 99.4 2E-12 6.9E-17 86.0 7.3 61 3-67 24-85 (97)
312 2cqd_A RNA-binding region cont 99.4 1.4E-12 4.8E-17 89.6 6.7 64 3-67 28-94 (116)
313 3ex7_B RNA-binding protein 8A; 99.3 1.9E-12 6.5E-17 90.2 7.2 65 3-67 33-100 (126)
314 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 1.5E-12 5.3E-17 92.1 6.8 63 3-65 74-139 (140)
315 1fjc_A Nucleolin RBD2, protein 99.3 1.3E-12 4.3E-17 86.7 5.7 62 3-67 27-89 (96)
316 2dgx_A KIAA0430 protein; RRM d 99.3 2.7E-12 9.4E-17 85.2 7.4 63 3-67 20-88 (96)
317 3ue2_A Poly(U)-binding-splicin 99.3 3.3E-12 1.1E-16 88.1 8.0 67 5-71 38-111 (118)
318 2voo_A Lupus LA protein; RNA-b 99.3 3.1E-12 1.1E-16 95.8 8.1 65 3-67 120-185 (193)
319 3tht_A Alkylated DNA repair pr 99.3 3.1E-12 1E-16 103.4 8.5 75 104-184 15-97 (345)
320 1x4d_A Matrin 3; structural ge 99.3 2.5E-12 8.5E-17 86.5 6.7 61 3-67 27-90 (102)
321 2m2b_A RNA-binding protein 10; 99.3 4.2E-13 1.5E-17 94.3 3.1 64 3-67 34-106 (131)
322 1sjq_A Polypyrimidine tract-bi 99.3 9.4E-13 3.2E-17 88.8 4.6 61 3-67 27-90 (105)
323 2kn4_A Immunoglobulin G-bindin 99.3 1.9E-12 6.5E-17 93.6 6.5 65 3-67 81-148 (158)
324 2cq1_A PTB-like protein L; RRM 99.3 3.7E-12 1.3E-16 85.5 7.2 61 3-67 26-89 (101)
325 1rk8_A CG8781-PA, CG8781-PA pr 99.3 4.5E-12 1.5E-16 92.5 8.3 65 3-67 83-150 (165)
326 2f3j_A RNA and export factor b 99.3 2.3E-12 7.8E-17 95.2 6.5 65 3-67 99-165 (177)
327 1nu4_A U1A RNA binding domain; 99.3 1.4E-12 4.6E-17 86.7 4.8 64 3-67 19-87 (97)
328 2ad9_A Polypyrimidine tract-bi 99.3 3.5E-12 1.2E-16 88.0 6.9 61 3-67 42-105 (119)
329 1wex_A Hypothetical protein (r 99.3 6.2E-12 2.1E-16 84.9 7.4 61 3-67 26-89 (104)
330 1x4f_A Matrin 3; structural ge 99.3 3E-12 1E-16 87.4 5.9 60 4-67 38-100 (112)
331 2dnq_A RNA-binding protein 4B; 99.3 6.8E-12 2.3E-16 82.2 7.3 59 3-67 19-78 (90)
332 2lea_A Serine/arginine-rich sp 99.3 3.1E-12 1E-16 90.4 6.0 65 3-67 58-125 (135)
333 3egn_A RNA-binding protein 40; 99.3 3E-12 1E-16 91.2 6.0 65 3-67 56-128 (143)
334 1owx_A Lupus LA protein, SS-B, 99.3 2.3E-11 7.9E-16 83.8 9.9 84 103-192 14-102 (121)
335 2cpx_A Hypothetical protein FL 99.3 3.5E-12 1.2E-16 87.3 5.9 65 3-67 36-103 (115)
336 1x4c_A Splicing factor, argini 99.3 8.5E-12 2.9E-16 84.6 7.7 61 3-68 26-92 (108)
337 2bz2_A Negative elongation fac 99.3 6.2E-12 2.1E-16 87.2 7.0 60 4-67 49-109 (121)
338 2dis_A Unnamed protein product 99.3 4.8E-12 1.6E-16 85.8 6.2 65 3-67 19-90 (109)
339 2xnq_A Nuclear polyadenylated 99.3 1E-11 3.5E-16 82.7 7.7 59 3-67 34-93 (97)
340 2cpj_A Non-POU domain-containi 99.3 7.1E-12 2.4E-16 83.6 6.9 61 3-67 26-87 (99)
341 1whx_A Hypothetical protein ri 99.3 6.1E-12 2.1E-16 85.8 6.7 61 3-67 21-82 (111)
342 1why_A Hypothetical protein ri 99.3 8.4E-12 2.9E-16 82.9 7.0 61 3-67 28-91 (97)
343 1wg1_A KIAA1579 protein, homol 99.3 1.1E-11 3.9E-16 80.9 7.5 60 3-67 16-76 (88)
344 2la4_A Nuclear and cytoplasmic 99.3 4.4E-12 1.5E-16 84.9 5.2 61 3-67 38-99 (101)
345 2jvo_A Nucleolar protein 3; nu 99.3 1.1E-11 3.6E-16 84.2 7.2 59 3-67 42-101 (108)
346 2ytc_A PRE-mRNA-splicing facto 99.3 1.3E-11 4.5E-16 79.8 7.2 60 3-66 23-84 (85)
347 2cq2_A Hypothetical protein LO 99.3 3E-12 1E-16 87.5 4.0 61 3-67 38-104 (114)
348 2dnr_A Synaptojanin-1; RRM dom 99.3 2.1E-11 7.2E-16 79.1 7.6 72 106-185 6-85 (91)
349 2dgt_A RNA-binding protein 30; 99.2 2.4E-11 8.1E-16 79.9 7.8 59 3-67 21-80 (92)
350 1x4g_A Nucleolysin TIAR; struc 99.2 1.4E-11 4.9E-16 83.6 6.8 61 3-67 36-97 (109)
351 2fc8_A NCL protein; structure 99.2 2.1E-11 7E-16 81.7 7.5 62 3-67 26-90 (102)
352 2e5g_A U6 snRNA-specific termi 99.2 8.8E-12 3E-16 82.4 5.5 62 3-67 19-80 (94)
353 2kvi_A Nuclear polyadenylated 99.2 1.4E-11 4.7E-16 81.8 6.4 59 3-67 22-81 (96)
354 2lcw_A RNA-binding protein FUS 98.9 6.6E-13 2.3E-17 91.3 0.0 67 3-69 18-95 (116)
355 1wf1_A RNA-binding protein RAL 99.2 1.1E-11 3.7E-16 84.3 6.0 58 4-67 40-98 (110)
356 1sjr_A Polypyrimidine tract-bi 99.2 1.5E-11 5.1E-16 89.2 6.9 64 3-68 57-123 (164)
357 2dgu_A Heterogeneous nuclear r 99.2 1.9E-11 6.3E-16 82.2 6.9 59 3-67 22-81 (103)
358 2e5j_A Methenyltetrahydrofolat 99.2 1.8E-11 6.2E-16 81.3 6.6 62 3-67 30-92 (97)
359 3beg_B Splicing factor, argini 99.2 1.7E-11 5.8E-16 84.1 6.5 60 3-67 27-92 (115)
360 2dnp_A RNA-binding protein 14; 99.2 2.1E-11 7E-16 79.9 6.6 59 3-67 20-79 (90)
361 2cqh_A IGF-II mRNA-binding pro 99.2 1.3E-11 4.4E-16 81.3 5.4 60 3-67 19-81 (93)
362 2i2y_A Fusion protein consists 99.2 1.6E-11 5.4E-16 88.1 5.9 62 3-67 84-146 (150)
363 3d2w_A TAR DNA-binding protein 99.2 3E-11 1E-15 79.1 6.7 63 3-69 22-84 (89)
364 3zzy_A Polypyrimidine tract-bi 99.2 4.7E-11 1.6E-15 83.4 7.6 62 3-67 39-104 (130)
365 2dnl_A Cytoplasmic polyadenyla 99.2 1.9E-11 6.7E-16 83.7 5.6 60 3-64 19-83 (114)
366 2hzc_A Splicing factor U2AF 65 99.2 2.7E-11 9.1E-16 78.7 5.9 59 3-65 17-86 (87)
367 2e5i_A Heterogeneous nuclear r 99.2 5E-11 1.7E-15 82.8 7.4 61 3-67 36-100 (124)
368 2cpd_A Apobec-1 stimulating pr 99.2 6.8E-11 2.3E-15 78.7 7.4 59 3-67 26-87 (99)
369 3pgw_S U1-70K; protein-RNA com 99.2 4E-11 1.4E-15 100.2 7.3 66 3-68 113-181 (437)
370 2diu_A KIAA0430 protein; struc 99.1 8E-11 2.7E-15 77.1 6.0 56 4-67 21-82 (96)
371 1wf0_A TDP-43, TAR DNA-binding 99.1 6.8E-11 2.3E-15 77.0 4.8 61 3-67 16-76 (88)
372 2e44_A Insulin-like growth fac 99.1 2.7E-10 9.1E-15 75.3 6.8 63 3-68 26-91 (96)
373 3u1l_A PRE-mRNA-splicing facto 99.1 2.5E-10 8.6E-15 87.8 7.3 60 5-68 156-228 (240)
374 1ufw_A Synaptojanin 2; RNP dom 99.1 1.7E-10 5.8E-15 75.3 5.2 72 106-185 14-94 (95)
375 3dxb_A Thioredoxin N-terminall 99.0 9E-10 3.1E-14 83.9 7.9 82 108-190 125-217 (222)
376 3dxb_A Thioredoxin N-terminall 98.9 3.4E-09 1.2E-13 80.6 8.7 69 3-71 140-215 (222)
377 3tht_A Alkylated DNA repair pr 98.9 2.2E-09 7.4E-14 86.8 5.3 50 3-56 31-81 (345)
378 2dnr_A Synaptojanin-1; RRM dom 98.8 8E-09 2.7E-13 67.0 6.4 55 7-67 30-84 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.8 3.2E-08 1.1E-12 65.8 8.0 78 106-191 20-103 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 1.7E-08 5.7E-13 65.8 5.4 55 7-67 39-93 (95)
381 1owx_A Lupus LA protein, SS-B, 98.2 8.4E-06 2.9E-10 55.9 8.9 62 4-69 31-96 (121)
382 2dhx_A Poly (ADP-ribose) polym 98.1 2.2E-05 7.4E-10 51.8 8.9 72 106-185 7-83 (104)
383 1whv_A Poly(A)-specific ribonu 98.1 3.1E-05 1.1E-09 50.4 8.8 53 107-168 16-68 (100)
384 3p3d_A Nucleoporin 53; structu 98.1 7.6E-06 2.6E-10 56.4 5.9 85 108-193 8-106 (132)
385 1wwh_A Nucleoporin 35, nucleop 98.1 3.1E-05 1E-09 52.6 8.6 81 105-192 22-103 (119)
386 1wwh_A Nucleoporin 35, nucleop 97.9 3.1E-05 1.1E-09 52.6 7.0 64 6-73 37-101 (119)
387 3ctr_A Poly(A)-specific ribonu 97.7 3.2E-05 1.1E-09 50.5 3.6 52 108-168 7-58 (101)
388 3p3d_A Nucleoporin 53; structu 97.6 0.0001 3.5E-09 50.8 5.2 66 6-71 20-101 (132)
389 2l9w_A U4/U6 snRNA-associated- 97.5 0.00045 1.5E-08 46.0 7.2 62 2-67 31-98 (117)
390 1wey_A Calcipressin 1; structu 97.3 0.00098 3.3E-08 44.0 6.6 72 107-184 5-82 (104)
391 2dhx_A Poly (ADP-ribose) polym 97.2 0.0021 7.1E-08 42.3 7.5 59 3-67 19-82 (104)
392 1uw4_A UPF3X; nonsense mediate 96.9 0.0044 1.5E-07 40.0 7.3 65 109-174 3-71 (91)
393 1whv_A Poly(A)-specific ribonu 96.0 0.018 6E-07 37.5 5.6 43 3-51 26-68 (100)
394 3pq1_A Poly(A) RNA polymerase; 95.6 0.0096 3.3E-07 49.8 3.9 63 107-175 53-115 (464)
395 2l08_A Regulator of nonsense t 95.4 0.016 5.3E-07 37.8 3.6 63 107-173 9-78 (97)
396 3ctr_A Poly(A)-specific ribonu 95.0 0.021 7.3E-07 37.2 3.5 43 3-51 16-58 (101)
397 3pq1_A Poly(A) RNA polymerase; 94.7 0.017 5.7E-07 48.3 2.9 48 4-54 64-111 (464)
398 3d45_A Poly(A)-specific ribonu 93.7 0.21 7.2E-06 42.3 7.7 54 106-168 439-492 (507)
399 1wey_A Calcipressin 1; structu 92.3 0.3 1E-05 32.1 5.2 56 7-67 25-82 (104)
400 4e8u_A Putative uncharacterize 86.1 3.2 0.00011 29.7 7.0 57 108-167 13-81 (172)
401 3d45_A Poly(A)-specific ribonu 82.4 2.5 8.6E-05 35.7 6.1 44 2-51 449-492 (507)
402 1ywx_A 30S ribosomal protein S 67.4 4.3 0.00015 26.4 2.8 44 3-47 29-79 (102)
403 1xn9_A 30S ribosomal protein S 67.2 7.5 0.00026 25.2 3.9 46 3-49 29-81 (101)
404 2v94_A RPS24, 30S ribosomal pr 65.9 5.5 0.00019 26.1 3.1 45 3-48 38-89 (107)
405 4e8u_A Putative uncharacterize 64.3 7.9 0.00027 27.7 3.9 47 3-51 32-82 (172)
406 3u5c_Y RP50, 40S ribosomal pro 58.9 19 0.00064 24.6 4.9 44 3-47 34-84 (135)
407 2xzm_P RPS24E; ribosome, trans 52.1 16 0.00055 25.4 3.7 45 3-48 32-83 (149)
408 2g1d_A 30S ribosomal protein S 51.4 8.2 0.00028 24.9 2.0 44 3-47 30-80 (98)
409 1i4w_A Mitochondrial replicati 37.8 30 0.001 27.6 3.7 60 108-175 143-202 (353)
410 3lpe_A Putative transcription 28.3 1.1E+02 0.0037 19.0 5.6 30 18-50 39-68 (92)
411 3fut_A Dimethyladenosine trans 27.9 48 0.0016 25.2 3.3 23 108-130 111-133 (271)
412 4eyt_A Telomerase associated p 27.2 1.1E+02 0.0036 19.3 4.2 19 33-51 47-65 (129)
413 3iz6_U 40S ribosomal protein S 23.0 20 0.00068 24.6 0.3 44 3-47 39-90 (138)
414 3uzu_A Ribosomal RNA small sub 22.7 33 0.0011 26.2 1.5 23 108-130 115-137 (279)
415 3h7h_B Transcription elongatio 21.8 1.4E+02 0.0047 19.2 4.2 31 18-51 40-70 (106)
416 2kpo_A Rossmann 2X2 fold prote 20.9 1.5E+02 0.0052 18.0 4.4 50 119-180 33-83 (110)
417 1igq_A Transcriptional repress 20.8 73 0.0025 18.5 2.3 21 138-158 22-42 (62)
418 2g0c_A ATP-dependent RNA helic 20.4 1.4E+02 0.0047 17.3 5.9 63 117-184 11-75 (76)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.8e-33 Score=211.41 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=132.3
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~ 80 (196)
..|+++|+++|+.||.|.+|. +.++ +|.++|||||+|.+.++|.+||+.++..++|+.|.|..+.......
T Consensus 24 ~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~------- 96 (196)
T 1l3k_A 24 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ------- 96 (196)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC------------
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCccccc-------
Confidence 469999999999999999985 4554 7999999999999999999999889999999999997765332100
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCH
Q 029263 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANA 159 (196)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~ 159 (196)
.........+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.
T Consensus 97 -------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 97 -------------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE-VIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp -------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSH
T ss_pred -------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE-EEEEeecCCCCCccceEEEEECCH
Confidence 000122357899999999999999999999999876 78888886 899999999999999
Q ss_pred HHHHHHHHhCCCccCCeEEEEEECChHHHHHHH
Q 029263 160 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 192 (196)
Q Consensus 160 ~~A~~Al~~~g~~l~gr~i~V~~~~~~~~~~~~ 192 (196)
++|.+|+..++..|+|+.|.|.++.+.+.....
T Consensus 157 ~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 157 DSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp HHHHHHHHCSCCEETTEECEEEECC--------
T ss_pred HHHHHHHHhCCcEECCEEEEEEecCChhHhccc
Confidence 999999988999999999999999888665543
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=201.24 Aligned_cols=152 Identities=21% Similarity=0.247 Sum_probs=132.3
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~ 80 (196)
..|+++|+++|+.||.|.++. +.+++|+++|||||+|.+.++|.+|+ .+++..+.++.|.|..+....
T Consensus 11 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~---------- 80 (166)
T 3md3_A 11 AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ---------- 80 (166)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC----------
T ss_pred cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC----------
Confidence 478999999999999999985 45778999999999999999999999 789999999999997665210
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeC-CCCCCceEEEEEeCCH
Q 029263 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDGRPTGEAFVEFANA 159 (196)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~-~~g~~~G~afV~F~~~ 159 (196)
........+|||+|||+.+|+++|+++|++||.+. .+.++.+ .+|.++|+|||+|.+.
T Consensus 81 --------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 81 --------------------QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp --------------------CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEE-EEEEEECTTTCCEEEEEEEEESCH
T ss_pred --------------------CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCee-EEEEEecCCCCCcceEEEEEeCCH
Confidence 01122457899999999999999999999999876 7888887 4899999999999999
Q ss_pred HHHHHHHH-hCCCccCCeEEEEEECCh
Q 029263 160 EDSKAAMA-KDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 160 ~~A~~Al~-~~g~~l~gr~i~V~~~~~ 185 (196)
++|.+|+. +||..++|+.|+|.++++
T Consensus 140 ~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 140 DDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 99999997 499999999999999864
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.4e-32 Score=210.10 Aligned_cols=157 Identities=19% Similarity=0.209 Sum_probs=133.4
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..||++|+++|+.||.|.+|. +.|. +|+++|||||+|.+.++|.+|| .+++..+.++.|.+..+.......
T Consensus 26 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~------ 99 (213)
T 4f02_A 26 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR------ 99 (213)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH------
T ss_pred CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc------
Confidence 468999999999999999985 4554 8999999999999999999999 579999999999887655322111
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCH
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 159 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~ 159 (196)
.....+|||+|||+.+|+++|+++|+.||.+. .|+|+.+.. .++|||||+|.+.
T Consensus 100 ------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~~~i~~d~~-~~~g~~fV~f~~~ 153 (213)
T 4f02_A 100 ------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL-SCKVVCDEN-GSKGYGFVHFETQ 153 (213)
T ss_dssp ------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEETT-EEEEEEEEEESSH
T ss_pred ------------------------ccccccceECCcccccHHHHHHHHHhhcCCeE-EEEeeccCC-CCceEEEEEeCCH
Confidence 01235799999999999999999999999776 788888764 4799999999999
Q ss_pred HHHHHHHHh-CCCccCCeEEEEEECChHHHHHH
Q 029263 160 EDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEA 191 (196)
Q Consensus 160 ~~A~~Al~~-~g~~l~gr~i~V~~~~~~~~~~~ 191 (196)
++|.+|+.. ||..|+||.|+|.++.+......
T Consensus 154 ~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~ 186 (213)
T 4f02_A 154 EAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 186 (213)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCHHHHHH
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEcCCCcccch
Confidence 999999975 99999999999999987755544
No 4
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=9.9e-33 Score=202.42 Aligned_cols=150 Identities=14% Similarity=0.217 Sum_probs=131.2
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~ 80 (196)
..|+++|+++|+.||.|.++.+ .+ .+|+++|||||+|.+.++|.+||+. +..++|+.|.+..+......
T Consensus 14 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~~~~~-------- 84 (167)
T 2cjk_A 14 DTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIPRDEQ-------- 84 (167)
T ss_dssp TCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCCHHHH--------
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccchhhc--------
Confidence 4699999999999999999864 45 4899999999999999999999974 67889999988766543210
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCH
Q 029263 81 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANA 159 (196)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~ 159 (196)
....+|||+|||+++|+++|+++|++||.+. .+.++.+. +|.++|+|||+|.+.
T Consensus 85 ------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 85 ------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTII-DAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp ------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCS-EEECCCSSSSSTTSEEEEEEESSH
T ss_pred ------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEE-EEEEEEcCCCCccceEEEEEECCH
Confidence 1245899999999999999999999999776 78888885 899999999999999
Q ss_pred HHHHHHHHhCCCccCCeEEEEEECChH
Q 029263 160 EDSKAAMAKDRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 160 ~~A~~Al~~~g~~l~gr~i~V~~~~~~ 186 (196)
++|.+|+.+|+..++|++|.|.++.++
T Consensus 140 ~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 140 DAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred HHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 999999999999999999999999764
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.98 E-value=2.5e-31 Score=194.92 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=129.8
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..|+++|+++|+.||.|.++.+ .+ .+|+++|||||+|.+.++|.+|++ +++..++++.|.|..+.+..
T Consensus 14 ~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~--------- 84 (168)
T 1b7f_A 14 DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG--------- 84 (168)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS---------
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc---------
Confidence 4689999999999999999854 44 489999999999999999999995 89999999999997665210
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCC
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFAN 158 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~ 158 (196)
......+|||+|||+.+|+++|+++|++||.+. .+.++.+. +|.++|+|||+|.+
T Consensus 85 -----------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~ 140 (168)
T 1b7f_A 85 -----------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNK 140 (168)
T ss_dssp -----------------------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEE-EEEEEECTTTCCEEEEEEEEESS
T ss_pred -----------------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEE-EEEEEEcCCCCCcceEEEEEECC
Confidence 112356899999999999999999999999776 78888887 89999999999999
Q ss_pred HHHHHHHHHh-CCCccCC--eEEEEEEC
Q 029263 159 AEDSKAAMAK-DRMTLGS--RYIELFPS 183 (196)
Q Consensus 159 ~~~A~~Al~~-~g~~l~g--r~i~V~~~ 183 (196)
.++|.+|+.. ||..+.| ++|+|.+|
T Consensus 141 ~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 141 REEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999975 9999977 99999876
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=4.4e-31 Score=193.22 Aligned_cols=148 Identities=14% Similarity=0.204 Sum_probs=128.6
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..|+++|+++|+.||.|.++. +.+. +|+++|||||+|.+.++|.+|++ +++..++++.|.|..+.+..
T Consensus 13 ~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~--------- 83 (167)
T 1fxl_A 13 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS--------- 83 (167)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC---------
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCc---------
Confidence 469999999999999999985 4565 99999999999999999999995 89999999999997665210
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCC
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFAN 158 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~ 158 (196)
......+|||+|||+.+|+++|+++|++||.+. .+.++.+. +|.++|+|||+|.+
T Consensus 84 -----------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~ 139 (167)
T 1fxl_A 84 -----------------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRII-TSRILVDQVTGVSRGVGFIRFDK 139 (167)
T ss_dssp -----------------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESS
T ss_pred -----------------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEe-EEEEEecCCCCCccceEEEEeCC
Confidence 112346899999999999999999999999776 78888876 89999999999999
Q ss_pred HHHHHHHHHh-CCCccCCeE--EEEEEC
Q 029263 159 AEDSKAAMAK-DRMTLGSRY--IELFPS 183 (196)
Q Consensus 159 ~~~A~~Al~~-~g~~l~gr~--i~V~~~ 183 (196)
.++|.+|+.. ||..++|+. |+|.+|
T Consensus 140 ~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 140 RIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999975 999999975 888765
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.4e-31 Score=203.88 Aligned_cols=162 Identities=19% Similarity=0.272 Sum_probs=131.3
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..|+++|+++|+.||.|.+|.+ .+. +|+++|||||+|.+.++|.+||+ +++..++++.|.|................
T Consensus 39 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~ 118 (216)
T 2qfj_A 39 ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQL 118 (216)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhh
Confidence 4689999999999999999865 454 89999999999999999999996 89999999999996654322111100000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCC
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFAN 158 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~ 158 (196)
. .......+|||+|||+++|+++|+++|++||.+. .|.++.+. +|.++|+|||+|.+
T Consensus 119 ~---------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 119 A---------------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK-SATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp H---------------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEE-EEEEEECTTTCCEEEEEEEEESS
T ss_pred h---------------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCee-EEEEEecCCCCCcCceEEEEecC
Confidence 0 0012357899999999999999999999999776 78888885 89999999999999
Q ss_pred HHHHHHHHHh-CCCccCCeEEEEEECChH
Q 029263 159 AEDSKAAMAK-DRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 159 ~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 186 (196)
.++|.+|+.. ||..|+|+.|+|.++.+.
T Consensus 177 ~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 177 AQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred HHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 9999999985 999999999999998654
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2.6e-31 Score=195.74 Aligned_cols=149 Identities=16% Similarity=0.190 Sum_probs=123.9
Q ss_pred CchHHHHHHHhcccCccee-------EEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIVD-------VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~-------v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~ 75 (196)
..|+++|+++|+.||.|.. .+.....++++|||||+|.+.++|.+||++++..+.|+.|.|......
T Consensus 15 ~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~------ 88 (172)
T 2g4b_A 15 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDY------ 88 (172)
T ss_dssp TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSC------
T ss_pred ccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCccc------
Confidence 4699999999999953322 111112345689999999999999999999999999999999654311
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEE
Q 029263 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFV 154 (196)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV 154 (196)
.......+|||+|||+.+|+++|+++|++||.+. .+.++.+. +|.++|+|||
T Consensus 89 --------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV 141 (172)
T 2g4b_A 89 --------------------------QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK-AFNLVKDSATGLSKGYAFC 141 (172)
T ss_dssp --------------------------CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTTCSEEEEEEE
T ss_pred --------------------------CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce-EEEEEecCCCCCcceEEEE
Confidence 0112357899999999999999999999999876 89998886 9999999999
Q ss_pred EeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 155 EFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 155 ~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
+|.+.++|.+|+.. ||..++|+.|.|.+|+
T Consensus 142 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 142 EYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999975 9999999999999985
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=2.2e-30 Score=191.01 Aligned_cols=150 Identities=15% Similarity=0.130 Sum_probs=124.9
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCC---cccceEEEEeCCHHHHHHHHH-hcccccC---CeeEEEEEcChHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNN---KFTGEAFCVLGYPLQVDFALQ-RNRQNMG---RRYVEVFRSKRQEYYKA 74 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g---~~~G~afV~F~~~~~a~~Al~-~~~~~l~---~~~i~v~~~~~~~~~~~ 74 (196)
..|+++|+++|++||.|.++. +.+..+ +++|||||+|.+.++|++|++ +++..+. ++.+.+.......
T Consensus 14 ~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~---- 89 (175)
T 3nmr_A 14 TWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEK---- 89 (175)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGC----
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccc----
Confidence 469999999999999999985 455543 899999999999999999994 7877654 4566665544211
Q ss_pred HhhccccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEE
Q 029263 75 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 154 (196)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV 154 (196)
.......+|||+|||+.+|+++|+++|++||.+. .|.++.+.+|.++|+|||
T Consensus 90 ---------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~v~~~~~~~g~~~g~afV 141 (175)
T 3nmr_A 90 ---------------------------NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE-ECRILRGPDGLSRGCAFV 141 (175)
T ss_dssp ---------------------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTSCEEEEEEE
T ss_pred ---------------------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEE-EEEEEECCCCCEEEEEEE
Confidence 0122467899999999999999999999999876 899999999999999999
Q ss_pred EeCCHHHHHHHHHh-CCCccC---CeEEEEEECC
Q 029263 155 EFANAEDSKAAMAK-DRMTLG---SRYIELFPSS 184 (196)
Q Consensus 155 ~F~~~~~A~~Al~~-~g~~l~---gr~i~V~~~~ 184 (196)
+|.+.++|.+|+.. ||..+. |++|.|.++.
T Consensus 142 ~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 142 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999965 987665 4999999873
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=8.1e-31 Score=197.19 Aligned_cols=171 Identities=15% Similarity=0.153 Sum_probs=130.3
Q ss_pred CchHHHHHHHhcccCccee-------EEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIVD-------VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~-------v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~ 75 (196)
..|+++|+++|+.||.|.. .+.....++++|||||+|.+.++|.+||++++..++|+.|.|..+.....
T Consensus 15 ~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~---- 90 (198)
T 2yh0_A 15 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP---- 90 (198)
T ss_dssp TCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCC----
T ss_pred CCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCC----
Confidence 4689999999999965543 12222346778999999999999999999999999999999976542110
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEE
Q 029263 76 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFV 154 (196)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV 154 (196)
.......+....+ ............+|||+|||+.+|+++|+++|++||.+. .|.++.+. +|.++|+|||
T Consensus 91 ----~~~~~~~~~~~~~----~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~-~~~~~~~~~~~~~~g~afV 161 (198)
T 2yh0_A 91 ----LPGMSENPSVYVP----GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK-AFNLVKDSATGLSKGYAFC 161 (198)
T ss_dssp ----CCCSSSCSSCCCT----TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE-EEEEEECTTTCSEEEEEEE
T ss_pred ----CCCCcCCCcCCCC----CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc-EEEEeecCCCCCcceEEEE
Confidence 0000000000000 001111224568999999999999999999999999776 78998886 9999999999
Q ss_pred EeCCHHHHHHHHHh-CCCccCCeEEEEEECChH
Q 029263 155 EFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 155 ~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 186 (196)
+|.+.++|.+|+.. ||..|+|+.|.|.++.+.
T Consensus 162 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 162 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999975 999999999999998753
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.2e-31 Score=196.85 Aligned_cols=148 Identities=16% Similarity=0.274 Sum_probs=126.9
Q ss_pred CchHHHHHHHhcccCcceeEEEe-cCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~-~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
..|+++|+++|+.||.+..+.+. ..+|+++|||||+|.+.++|.+||++++..+.|+.|.|..+....
T Consensus 24 ~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~----------- 92 (175)
T 1fje_B 24 NKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRD----------- 92 (175)
T ss_dssp TSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSS-----------
T ss_pred CCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcc-----------
Confidence 46899999999999988874333 358899999999999999999999999999999999997665211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHH
Q 029263 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161 (196)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~ 161 (196)
........+|||+|||+.+|+++|+++|++||. |.++ ..+|.++|+|||+|.+.++
T Consensus 93 -------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~----v~~~-~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 93 -------------------SKKVRAARTLLAKNLSFNITEDELKEVFEDALE----IRLV-SQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp -------------------CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSE----EEEE-CSSSSCCSEEEEECSSHHH
T ss_pred -------------------ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCe----EEEe-cCCCCCceEEEEEECCHHH
Confidence 011234679999999999999999999999985 4444 7789999999999999999
Q ss_pred HHHHHHh-CCCccCCeEEEEEECCh
Q 029263 162 SKAAMAK-DRMTLGSRYIELFPSSH 185 (196)
Q Consensus 162 A~~Al~~-~g~~l~gr~i~V~~~~~ 185 (196)
|.+|+.. ||..|+|+.|+|.++.+
T Consensus 149 A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 149 AEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HHHHHHHHTEEEETTEEEEEEECSS
T ss_pred HHHHHHHhCCCEECCeEEEEEecCC
Confidence 9999985 99999999999999875
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.9e-30 Score=204.06 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=136.9
Q ss_pred CchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..|+++|+++|+.||.|.++. +.+ .+|.++|||||+|.+.++|.+|+ .+++..++|+.|.|..+.+...
T Consensus 106 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~-------- 177 (284)
T 3smz_A 106 SLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL-------- 177 (284)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC--------
T ss_pred cCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC--------
Confidence 468999999999999999984 455 48999999999999999999999 7899999999999987763320
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCC-CCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCC
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFS-AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 158 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~-~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~ 158 (196)
........+|||+|||+. +|+++|+++|+.||.+. .+.++.+.+|.++|+|||+|.+
T Consensus 178 ---------------------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~-~v~i~~~~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 178 ---------------------TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPT-FCQLACGQDGQLKGFAVLEYET 235 (284)
T ss_dssp ---------------------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCS-EEEEEECSSCCEEEEEEEECSS
T ss_pred ---------------------CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeE-EEEEEECCCCCcccEEEEEeCC
Confidence 001224578999999999 59999999999999776 7999999999999999999999
Q ss_pred HHHHHHHHHh-CCCccCCeEEEEEECChHHHHH
Q 029263 159 AEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDE 190 (196)
Q Consensus 159 ~~~A~~Al~~-~g~~l~gr~i~V~~~~~~~~~~ 190 (196)
.++|.+|+.. ||..++|++|.|.++.+.+...
T Consensus 236 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCSSSCHH
T ss_pred HHHHHHHHHHhCCCccCCeEEEEEEecCCCccc
Confidence 9999999975 9999999999999998765433
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=8.4e-30 Score=202.89 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=127.3
Q ss_pred CchHHHHHHHhcccC-cceeEEE-ecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHhhcc
Q 029263 3 LPQVQVLCTIHHQLM-DIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEV 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g-~i~~v~~-~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~~~~ 79 (196)
..|+++|+++|+.|| .|.++.+ .+..|.++|||||+|.+.++|.+|++ +++..++|+.|.|..+.+.......
T Consensus 128 ~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~---- 203 (292)
T 2ghp_A 128 SYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT---- 203 (292)
T ss_dssp TCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC----------
T ss_pred CCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc----
Confidence 468999999999999 9999864 46678999999999999999999996 8999999999999776532210000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCC-CCHHHHHHHhhcCCCccceEEEEeCCC--CCCceEEEEEe
Q 029263 80 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFS-AGKDDIMDFFKDFVLSEDSIHITMNSD--GRPTGEAFVEF 156 (196)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~-~t~~~l~~~F~~~g~~~~~v~l~~~~~--g~~~G~afV~F 156 (196)
........+|||+|||+. +|+++|+++|++||.+. .|.++.+.. |.++|+|||+|
T Consensus 204 ---------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~tg~~~g~afV~F 261 (292)
T 2ghp_A 204 ---------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE-KINIPAGQKEHSFNNCCAFMVF 261 (292)
T ss_dssp ------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE-EEECCSCCC---CCCEEEEEEE
T ss_pred ---------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCee-EEEEEecCCcCCCCceEEEEEe
Confidence 011234679999999999 99999999999999876 788888876 99999999999
Q ss_pred CCHHHHHHHHHhCCCccCCeEEEEEECChH
Q 029263 157 ANAEDSKAAMAKDRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 157 ~~~~~A~~Al~~~g~~l~gr~i~V~~~~~~ 186 (196)
.+.++|.+|+.+||..|+|+.|.|.++.++
T Consensus 262 ~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 262 ENKDSAERALQMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp SSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred CCHHHHHHHHHhcCCEECCcEEEEEEecCC
Confidence 999999999944999999999999999764
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=9e-29 Score=196.93 Aligned_cols=144 Identities=13% Similarity=0.068 Sum_probs=123.0
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
..|+++|+++|+.||.|.+|.+ .+..| ++|||||+|.+.++|.+||++++..++|+.|.|....
T Consensus 52 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~-------------- 116 (292)
T 2ghp_A 52 SYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT-------------- 116 (292)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC--------------
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC--------------
Confidence 4789999999999999999864 45555 6899999999999999999999999999999986532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCC-CccceEEEEeCCCCCCceEEEEEeCCHH
Q 029263 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAE 160 (196)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g-~~~~~v~l~~~~~g~~~G~afV~F~~~~ 160 (196)
..+|||+|||+.+|+++|+++|+.|| .+. .|.++.+..|.++|||||+|.+.+
T Consensus 117 -------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~-~v~i~~~~~~~~~g~afV~f~~~~ 170 (292)
T 2ghp_A 117 -------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVAL-SIRLPSLRFNTSRRFAYIDVTSKE 170 (292)
T ss_dssp -------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCC-EEECC-------CCEEEEECSSHH
T ss_pred -------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeE-EEEEEeCCCCCcceEEEEEECCHH
Confidence 45899999999999999999999999 766 899998888999999999999999
Q ss_pred HHHHHHH-hCCCccCCeEEEEEECChHH
Q 029263 161 DSKAAMA-KDRMTLGSRYIELFPSSHEE 187 (196)
Q Consensus 161 ~A~~Al~-~~g~~l~gr~i~V~~~~~~~ 187 (196)
+|.+|+. +||..++|+.|.|.++.+..
T Consensus 171 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 171 DARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 9999998 59999999999999987654
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.9e-28 Score=186.16 Aligned_cols=175 Identities=12% Similarity=0.179 Sum_probs=124.1
Q ss_pred CCchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhccc
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 80 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~ 80 (196)
+..|+++|+++|+.||.|.+|.+... ++|||||+|.+.++|++|| .+|+..+.|+.|.|..+....... .....
T Consensus 15 ~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p--~~~~~ 89 (205)
T 3tyt_A 15 SKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMP--GQSYG 89 (205)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCC--CSCCB
T ss_pred ccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCC--Ccccc
Confidence 35789999999999999999976532 4799999999999999999 589999999999998765321100 00000
Q ss_pred cCCCCCCC-CC--CCCCCCCC-----CCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCcc-ceEEEEeCCCCCCceE
Q 029263 81 DVRGGSPH-RS--IPRAKSHD-----EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE-DSIHITMNSDGRPTGE 151 (196)
Q Consensus 81 ~~~~~~~~-~~--~~~~~~~~-----~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~-~~v~l~~~~~g~~~G~ 151 (196)
.....+. .+ ........ ........+.+|||+|||+++|+++|+++|++||.+. .++++..+. |.++|+
T Consensus 90 -~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~ 167 (205)
T 3tyt_A 90 -LEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSS 167 (205)
T ss_dssp -CTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEE
T ss_pred -cccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceE
Confidence 0000000 00 00000000 0000123457899999999999999999999999761 378887665 556799
Q ss_pred EEEEeCCHHHHHHHHHh-CCCccCCe----EEEEEEC
Q 029263 152 AFVEFANAEDSKAAMAK-DRMTLGSR----YIELFPS 183 (196)
Q Consensus 152 afV~F~~~~~A~~Al~~-~g~~l~gr----~i~V~~~ 183 (196)
|||+|.+.++|.+|+.. ||..|.|+ ++.|.++
T Consensus 168 gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 168 GLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99999999999999975 99999887 6777764
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=4.6e-28 Score=192.14 Aligned_cols=141 Identities=17% Similarity=0.222 Sum_probs=125.9
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
..|+++|+++|+.|| |.++.+ ++++|||||+|.+.++|.+|+ .+++..+.|+.|.|....
T Consensus 33 ~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-------------- 93 (284)
T 3smz_A 33 DVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-------------- 93 (284)
T ss_dssp TCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--------------
T ss_pred CCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--------------
Confidence 478999999999998 888866 578899999999999999999 579999999999996432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHH
Q 029263 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAE 160 (196)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~ 160 (196)
...+|||+|||+.+|+++|+++|+.||.+. .+.++.+. +|.++|+|||+|.+.+
T Consensus 94 ------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~ 148 (284)
T 3smz_A 94 ------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLE-RCFLVYSERTGQSKGYGFAEYMKKD 148 (284)
T ss_dssp ------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHH
T ss_pred ------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCee-EEEEEeeCCCCccceEEEEEECCHH
Confidence 235899999999999999999999999876 78888776 8999999999999999
Q ss_pred HHHHHHH-hCCCccCCeEEEEEECChHH
Q 029263 161 DSKAAMA-KDRMTLGSRYIELFPSSHEE 187 (196)
Q Consensus 161 ~A~~Al~-~~g~~l~gr~i~V~~~~~~~ 187 (196)
+|.+|+. +||..++|+.|.|.++.+..
T Consensus 149 ~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 149 SAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 9999995 59999999999999997653
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=2.3e-28 Score=192.08 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=125.6
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
..|+++|+++|+.||.|.+|.+. +++|||||+|.+.++|.+|++ +++..++|+.|.|..+.
T Consensus 33 ~~te~~l~~~F~~~G~i~~v~i~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~-------------- 94 (261)
T 3sde_A 33 DITEEDFKRLFERYGEPSEVFIN----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT-------------- 94 (261)
T ss_dssp TCCHHHHHHHTGGGCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC--------------
T ss_pred CCCHHHHHHHHHhcCCEEEEEEe----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc--------------
Confidence 46899999999999999998764 357999999999999999995 89999999999997655
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHH
Q 029263 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 161 (196)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~ 161 (196)
.+.+|||+|||+.+|+++|+++|+.||.+. .|.++.+.+|.++|+|||+|.+.++
T Consensus 95 ------------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 95 ------------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVE-KAVVVVDDRGRATGKGFVEFAAKPP 149 (261)
T ss_dssp ------------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEETTSCEEEEEEEEESSHHH
T ss_pred ------------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeE-EEEeeeCCCCCcCcEEEEEeCCHHH
Confidence 235899999999999999999999999776 7999999999999999999999999
Q ss_pred HHHHHHh--CCCccC---CeEEEEEECChH
Q 029263 162 SKAAMAK--DRMTLG---SRYIELFPSSHE 186 (196)
Q Consensus 162 A~~Al~~--~g~~l~---gr~i~V~~~~~~ 186 (196)
|.+|+.. ++..+. +|+|.|.++.+.
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 9999965 566665 999999998654
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=5e-28 Score=191.72 Aligned_cols=176 Identities=18% Similarity=0.168 Sum_probs=126.6
Q ss_pred CchHHHHH----HHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHH-HHHHh
Q 029263 3 LPQVQVLC----TIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEY-YKAIA 76 (196)
Q Consensus 3 ~~te~dl~----~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~-~~~~~ 76 (196)
..|+++|+ ++|+.||.|.+|.+.. +|+++|||||+|.+.++|.+|| .+|+..+.|+.|.|..+..... .....
T Consensus 20 ~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~ 98 (282)
T 3pgw_A 20 KIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMK 98 (282)
T ss_pred CCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhc
Confidence 46899977 9999999999987654 8899999999999999999999 6899999999999966543211 00000
Q ss_pred hc-cc---------------------cCCC-------CCCCC------------------------C------CCCCCCC
Q 029263 77 NE-VS---------------------DVRG-------GSPHR------------------------S------IPRAKSH 97 (196)
Q Consensus 77 ~~-~~---------------------~~~~-------~~~~~------------------------~------~~~~~~~ 97 (196)
.. .. .... ..+.. . .+.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~ 178 (282)
T 3pgw_A 99 GTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPG 178 (282)
T ss_pred CCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcc
Confidence 00 00 0000 00000 0 0000000
Q ss_pred -------------------CCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCC
Q 029263 98 -------------------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 158 (196)
Q Consensus 98 -------------------~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~ 158 (196)
.........+.+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|+|||+|.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~-~v~~~~~~----~g~afV~f~~ 253 (282)
T 3pgw_A 179 QIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK-EVRLVPGR----HDIAFVEFDN 253 (282)
T ss_pred ccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE-EEEEecCC----CcEEEEEeCC
Confidence 00001223457899999999999999999999999776 78887543 5799999999
Q ss_pred HHHHHHHHHh-CCCccC-CeEEEEEECC
Q 029263 159 AEDSKAAMAK-DRMTLG-SRYIELFPSS 184 (196)
Q Consensus 159 ~~~A~~Al~~-~g~~l~-gr~i~V~~~~ 184 (196)
.++|.+|+.. ||..|+ |+.|+|.++.
T Consensus 254 ~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 254 EVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999999975 999999 9999999985
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=5.3e-27 Score=176.69 Aligned_cols=174 Identities=15% Similarity=0.183 Sum_probs=124.6
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHhhcc--
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEV-- 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~~~~-- 79 (196)
..|+++|+++|+.||.|.+|.+.... +|||||+|.+.++|.+||+ +++..++|+.|.|..+.............
T Consensus 15 ~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~ 91 (198)
T 1qm9_A 15 RVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQ 91 (198)
T ss_dssp SCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSS
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccc
Confidence 56999999999999999998655321 7899999999999999995 89999999999997765321000000000
Q ss_pred ccCC--CCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCC-CccceEEEEeCCCCCCceEEEEEe
Q 029263 80 SDVR--GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEF 156 (196)
Q Consensus 80 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g-~~~~~v~l~~~~~g~~~G~afV~F 156 (196)
...+ ...+......+. ..........+.+|||+|||+.+|+++|+++|+.|| .+. .|.+..+ .+|+|||+|
T Consensus 92 ~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~-~v~i~~~----~~g~afV~f 165 (198)
T 1qm9_A 92 GLTKDYGNSPLHRFKKPG-SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK-GFKFFQK----DRKMALIQM 165 (198)
T ss_dssp SCEEESSCCCTTSSSSCC-CCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCC-EEEESST----TSSCEEEEC
T ss_pred cccccccCCchhhccCcc-ccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCce-EEEEEeC----CCcEEEEEe
Confidence 0000 000000000000 000011123468999999999999999999999999 665 7877653 368999999
Q ss_pred CCHHHHHHHHHh-CCCccC-CeEEEEEECCh
Q 029263 157 ANAEDSKAAMAK-DRMTLG-SRYIELFPSSH 185 (196)
Q Consensus 157 ~~~~~A~~Al~~-~g~~l~-gr~i~V~~~~~ 185 (196)
.+.++|.+|+.. ||..++ |+.|+|.++.+
T Consensus 166 ~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 166 GSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp SSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 999999999974 999999 99999999864
No 20
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=1.4e-26 Score=178.62 Aligned_cols=173 Identities=16% Similarity=0.179 Sum_probs=124.1
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHhhcc--
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEV-- 79 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~~~~-- 79 (196)
..|+++|+++|+.||.|.+|.+.... +|||||+|.+.++|++||+ +++..+.|+.|.|..+.............
T Consensus 46 ~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~ 122 (229)
T 2adc_A 46 RVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQ 122 (229)
T ss_dssp TCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTT
T ss_pred cCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCcccccccc
Confidence 57999999999999999998655321 7899999999999999995 89999999999997665221000000000
Q ss_pred ---ccCCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCC-CccceEEEEeCCCCCCceEEEEE
Q 029263 80 ---SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVE 155 (196)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g-~~~~~v~l~~~~~g~~~G~afV~ 155 (196)
.........+ ...+.. .........+.+|||+|||+.+|+++|+++|+.|| .+. .|.+..+ .+|+|||+
T Consensus 123 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~-~v~i~~~----~~g~afV~ 195 (229)
T 2adc_A 123 GLTKDYGNSPLHR-FKKPGS-KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK-GFKFFQK----DRKMALIQ 195 (229)
T ss_dssp TTEEECTTCSSCC-CCSTTS-GGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEE-EEEECSS----STTCEEEE
T ss_pred ccccccccCcccc-cCCccc-cccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCee-EEEEEEC----CCcEEEEE
Confidence 0000000000 000000 00001123468999999999999999999999999 665 7777543 46899999
Q ss_pred eCCHHHHHHHHH-hCCCccC-CeEEEEEECCh
Q 029263 156 FANAEDSKAAMA-KDRMTLG-SRYIELFPSSH 185 (196)
Q Consensus 156 F~~~~~A~~Al~-~~g~~l~-gr~i~V~~~~~ 185 (196)
|.+.++|.+|+. +||..++ |+.|+|.++++
T Consensus 196 f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 196 MGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred ECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 999999999997 5999999 99999999865
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=1.1e-24 Score=158.78 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=102.1
Q ss_pred EecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCC
Q 029263 24 FVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD 102 (196)
Q Consensus 24 ~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (196)
+.+.. +++|||||+|.+.++|++|++ .++....+..+.+....... ... .. . .......
T Consensus 6 ~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~--~--------~~~~~~~ 65 (158)
T 2kn4_A 6 ILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTF-------TVT--EG--S--------HHHHHHM 65 (158)
T ss_dssp EEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEE-------EEE--CC--C--------CCSSCCC
T ss_pred EecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccc-------ccc--cc--c--------ccccccc
Confidence 34433 689999999999999999995 45443322222221111000 000 00 0 0000011
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 029263 103 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 180 (196)
Q Consensus 103 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V 180 (196)
......+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+.. ||..|+|++|+|
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG-DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEE-EEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 223467999999999999999999999999776 78888885 899999999999999999999975 999999999999
Q ss_pred EECCh
Q 029263 181 FPSSH 185 (196)
Q Consensus 181 ~~~~~ 185 (196)
.++.+
T Consensus 145 ~~a~~ 149 (158)
T 2kn4_A 145 QMARY 149 (158)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99875
No 22
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=145.97 Aligned_cols=90 Identities=41% Similarity=0.695 Sum_probs=82.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCc---cceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLS---EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~---~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~ 182 (196)
...+|||+|||+++|+++|+++|++||.+ ...|.|+.+.+|+++|||||+|.+.++|++||..|+..|+||.|+|..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR 101 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45789999999999999999999999864 247999999999999999999999999999998899999999999999
Q ss_pred CChHHHHHHHHcC
Q 029263 183 SSHEEMDEALSRG 195 (196)
Q Consensus 183 ~~~~~~~~~~~~~ 195 (196)
+++++|..++.+.
T Consensus 102 a~~~e~~~~~~~~ 114 (123)
T 2dha_A 102 STAAEVQQVLNRF 114 (123)
T ss_dssp ECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc
Confidence 9999999998653
No 23
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.89 E-value=1e-22 Score=141.51 Aligned_cols=91 Identities=38% Similarity=0.697 Sum_probs=84.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCC---ccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~---~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~ 181 (196)
....+|||+|||+++|+++|+++|+.||. +. .|+|+.+..|+++|||||+|.+.++|++||.+|+..|+||.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~-~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVA-GVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGG-GEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCce-eEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 34678999999999999999999999997 44 799999989999999999999999999999999999999999999
Q ss_pred ECChHHHHHHHHcCC
Q 029263 182 PSSHEEMDEALSRGR 196 (196)
Q Consensus 182 ~~~~~~~~~~~~~~~ 196 (196)
++++.++..++++++
T Consensus 94 ~a~~~~~~~~~~~~~ 108 (118)
T 2db1_A 94 KSHRTEMDWVLKHSG 108 (118)
T ss_dssp EECHHHHHHHHHTTS
T ss_pred ECCHHHHHHHHHHhC
Confidence 999999999887653
No 24
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.89 E-value=1.2e-22 Score=144.23 Aligned_cols=90 Identities=39% Similarity=0.717 Sum_probs=84.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCC---ccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~---~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~ 181 (196)
....+|||+|||+++|+++|+++|++||. +. .|.|+.+..|+++|||||+|.+.++|++|+.+|+..|+||.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~-~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAA-GVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSST-TEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCcee-EEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 34679999999999999999999999997 44 799999989999999999999999999999999999999999999
Q ss_pred ECChHHHHHHHHcC
Q 029263 182 PSSHEEMDEALSRG 195 (196)
Q Consensus 182 ~~~~~~~~~~~~~~ 195 (196)
++++.++..++++.
T Consensus 121 ~a~~~e~~~~~~~~ 134 (136)
T 2hgl_A 121 KSHRTEMDWVLKHS 134 (136)
T ss_dssp ECCHHHHHHHHTTS
T ss_pred ECChHHHHHHHhhc
Confidence 99999999998764
No 25
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=8.9e-23 Score=147.47 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=104.4
Q ss_pred CCcccceEEEEeCCHHHHHHHH-Hh-cccccCCeeEEEEEcChHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 029263 28 NNKFTGEAFCVLGYPLQVDFAL-QR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 105 (196)
Q Consensus 28 ~g~~~G~afV~F~~~~~a~~Al-~~-~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (196)
....+|+++|+|.+.++|++|+ ++ |+..++| .|.+..+.... ......... ..........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~--------~~~~~~~~~--------~~~~~~~~~~ 71 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTF--------TVTEGSHHH--------HHHMHRDSCP 71 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEE--------EEECSSSSC--------CCCSCSSSST
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcc--------ccccccccc--------cccccccCCC
Confidence 3467899999999999999999 67 8999999 88876444211 000000000 0000111233
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~~ 184 (196)
...+|||+|||+.+|+++|+++|++||.+. .|.++.+ ++|||||+|.+.++|.+|+. +||..|+|++|+|.++.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLR-SVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEE-EEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEE-EEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 467999999999999999999999999776 7888865 68899999999999999997 59999999999999986
Q ss_pred h
Q 029263 185 H 185 (196)
Q Consensus 185 ~ 185 (196)
+
T Consensus 147 ~ 147 (150)
T 2i2y_A 147 G 147 (150)
T ss_dssp C
T ss_pred C
Confidence 5
No 26
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2.3e-22 Score=137.70 Aligned_cols=86 Identities=28% Similarity=0.556 Sum_probs=79.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
....+|||+|||+++|+++|+++|++|++ . .|.|+.+++|+++|||||+|.+.++|++||.+|+..|+||.|+|..++
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~~v-~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGLRV-D-AVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTSCC-C-EEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCe-e-EEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 34579999999999999999999999954 3 699999999999999999999999999999889999999999999999
Q ss_pred hHHHHHHH
Q 029263 185 HEEMDEAL 192 (196)
Q Consensus 185 ~~~~~~~~ 192 (196)
+.+|..+-
T Consensus 92 ~~~~~~~~ 99 (109)
T 2dnn_A 92 ERQWVAAG 99 (109)
T ss_dssp HHHHHHHH
T ss_pred ccchhhcC
Confidence 99998764
No 27
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.5e-22 Score=137.90 Aligned_cols=90 Identities=23% Similarity=0.438 Sum_probs=83.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
....+|||+|||+++|+++|+++|+.||.+...|.|+.+.+|.++|||||+|.+.++|.+||.+|+..|+||.|.|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 92 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence 34679999999999999999999999998733799999999999999999999999999999889999999999999999
Q ss_pred hHHHHHHHHc
Q 029263 185 HEEMDEALSR 194 (196)
Q Consensus 185 ~~~~~~~~~~ 194 (196)
++++.....+
T Consensus 93 ~~~~~~~~~~ 102 (114)
T 2cpy_A 93 LEDMREIEKN 102 (114)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 9999887654
No 28
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=138.54 Aligned_cols=90 Identities=31% Similarity=0.668 Sum_probs=83.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCC---ccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 181 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~---~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~ 181 (196)
....+|||+|||+++|+++|+++|+.||. +. .|.|+.+..|+++|||||+|.+.++|.+||.+|+..|+||.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~-~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN-GIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTT-TEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcc-eEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 35679999999999999999999999997 55 799999888999999999999999999999999999999999999
Q ss_pred ECChHHHHHHHHcC
Q 029263 182 PSSHEEMDEALSRG 195 (196)
Q Consensus 182 ~~~~~~~~~~~~~~ 195 (196)
++++.++..+++++
T Consensus 88 ~a~~~~~~~~~~~~ 101 (107)
T 2lmi_A 88 EINNEDVDALMKSL 101 (107)
T ss_dssp ECCHHHHHHHHHTT
T ss_pred ECCHHHHHHHHHhh
Confidence 99999999998765
No 29
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=134.04 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=73.7
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
..+.+|||+|||+++|+++|+++|++||.+. +|.+++++ +|.++|||||+|.+.++|.+|+.. ||..|+||.|+|.+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVE-SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999776 79998886 799999999999999999999975 99999999999999
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
|.|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 875
No 30
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.1e-23 Score=139.17 Aligned_cols=88 Identities=39% Similarity=0.741 Sum_probs=80.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
....+|||+|||+++|+++|+++|++||.+.+.|.|+.+.+|+++|||||+|.++++|++|+..|+..|+||.|.|.+++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 34679999999999999999999999998764588888899999999999999999999999889999999999999999
Q ss_pred hHHHHHHH
Q 029263 185 HEEMDEAL 192 (196)
Q Consensus 185 ~~~~~~~~ 192 (196)
+.++..+.
T Consensus 93 ~~~~~~~~ 100 (104)
T 1wg5_A 93 RAEVRTSG 100 (104)
T ss_dssp TTTSCCSS
T ss_pred HHHHHHhc
Confidence 88876544
No 31
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.3e-22 Score=138.26 Aligned_cols=88 Identities=39% Similarity=0.682 Sum_probs=80.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
....+|||+|||+++|+++|+++|+.||.+...+.+..+.+|.++|||||+|.+.++|.+||.+|+..|+||.|.|.+++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 34579999999999999999999999998774467777789999999999999999999999999999999999999999
Q ss_pred hHHHHHHH
Q 029263 185 HEEMDEAL 192 (196)
Q Consensus 185 ~~~~~~~~ 192 (196)
++++...+
T Consensus 103 ~~~~~~~~ 110 (124)
T 1wel_A 103 KKGMLEKI 110 (124)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987664
No 32
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.86 E-value=3.5e-22 Score=139.91 Aligned_cols=85 Identities=41% Similarity=0.795 Sum_probs=77.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
....+|||+|||+++|+++|+++|++|+++.+.|.|+.++.|+++|||||+|.++++|++|+.+++..|+||+|.|.+++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 34678999999999999999999999976633699999989999999999999999999999988899999999999999
Q ss_pred hHHHH
Q 029263 185 HEEMD 189 (196)
Q Consensus 185 ~~~~~ 189 (196)
++++.
T Consensus 120 ~~e~~ 124 (126)
T 2hgm_A 120 QEEVR 124 (126)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98874
No 33
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-21 Score=131.82 Aligned_cols=80 Identities=45% Similarity=0.720 Sum_probs=74.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
....+|||+|||+++|+++|+++|++||++ .|.|+.+++|+++|||||+|.+.++|++||.+|+..|+||.|+|.+++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS--EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 345799999999999999999999999954 699999999999999999999999999999889999999999999987
Q ss_pred hH
Q 029263 185 HE 186 (196)
Q Consensus 185 ~~ 186 (196)
+.
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 34
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=4.9e-22 Score=131.83 Aligned_cols=78 Identities=26% Similarity=0.390 Sum_probs=70.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCC-CccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh--CCCccCCeEEEEEEC
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK--DRMTLGSRYIELFPS 183 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g-~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~--~g~~l~gr~i~V~~~ 183 (196)
.+|||+|||+++|+++|+++|++|| .+. +|++++++ +|.++|||||+|.+.++|.+|+.. |+..++||+|+|.++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~-~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAR-EVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCS-BCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeE-EEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 5899999999999999999999999 555 78998886 799999999999999999999964 677899999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=129.79 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=75.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+++|+++|+++|++||.+. .|.|+.++ +|+++|||||+|.+.++|++|+.. ||..|+||.|+|.++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~-~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVE-EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCee-EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999876 79998887 699999999999999999999975 999999999999999
Q ss_pred ChHHH
Q 029263 184 SHEEM 188 (196)
Q Consensus 184 ~~~~~ 188 (196)
....-
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 36
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=126.35 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=69.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCc-cceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCC----ccCCeEEEE
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLS-EDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRM----TLGSRYIEL 180 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~-~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~----~l~gr~i~V 180 (196)
.+|||+|||+++|+++|+++|++||.+ ...|++++|+ +|.++|||||+|.+.++|.+|+.. |+. .|+||+|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 689999999999999999999999942 2379998887 799999999999999999999975 876 489999999
Q ss_pred EECC
Q 029263 181 FPSS 184 (196)
Q Consensus 181 ~~~~ 184 (196)
.+|.
T Consensus 90 ~~Ak 93 (95)
T 2lkz_A 90 DFAK 93 (95)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9985
No 37
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=127.90 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=73.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECCh
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~~ 185 (196)
...+|||+|||+++|+++|+++|++||.+. +|.++.+..|.++|||||+|.+.++|.+|+.+|+..++|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~-~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVL-NIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEE-EEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEE-EEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 467899999999999999999999999876 8999998889999999999999999999999999999999999998754
No 38
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=2.9e-20 Score=120.79 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=73.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECCh
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 185 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 185 (196)
+..|||+||++.+|+++|+++|.+||.+. ++++.. ++|||||+|.++++|.+|+.. |+..|+||.|+|..+++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~-~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLV-SFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEE-EEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEE-EEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 45799999999999999999999999876 777764 789999999999999999975 99999999999999999
Q ss_pred HHHHHHH
Q 029263 186 EEMDEAL 192 (196)
Q Consensus 186 ~~~~~~~ 192 (196)
.|+...+
T Consensus 81 ~~~~~~~ 87 (89)
T 2wbr_A 81 NEVQSIM 87 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988765
No 39
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=122.40 Aligned_cols=79 Identities=34% Similarity=0.638 Sum_probs=73.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECCh
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~~ 185 (196)
...+|||+|||+++|+++|+++|+.| .+. .|.++.+.+|+++|+|||+|.+.++|.+|+.+|+..|+||.|.|.++++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPV-AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCS-EEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-Cce-EEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 46799999999999999999999999 444 6999999999999999999999999999999999999999999999875
Q ss_pred H
Q 029263 186 E 186 (196)
Q Consensus 186 ~ 186 (196)
.
T Consensus 87 ~ 87 (91)
T 2dgw_A 87 G 87 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=4.1e-20 Score=121.24 Aligned_cols=78 Identities=24% Similarity=0.437 Sum_probs=71.9
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+++|+++|+++|++||.+. .|.++.++ +|.++|||||+|.+.++|.+|+..++..|+|+.|.|..|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVV-DCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 3567999999999999999999999999776 78998886 799999999999999999999988889999999999875
No 41
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.7e-20 Score=123.07 Aligned_cols=81 Identities=28% Similarity=0.487 Sum_probs=74.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.++.+.+|.++|||||+|.+.++|.+|+.. |+..++|+.|+|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVK-DLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3467899999999999999999999999776 79999999999999999999999999999965 999999999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=3.5e-20 Score=120.39 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=72.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECCh
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 185 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 185 (196)
.+|||+|||+++|+++|+++|++||.+. .+.++.+. +|.++|+|||+|.+.++|++|+.. ||..++|+.|+|.++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5799999999999999999999999776 78888884 899999999999999999999985 99999999999999976
Q ss_pred H
Q 029263 186 E 186 (196)
Q Consensus 186 ~ 186 (196)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 43
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.4e-20 Score=121.59 Aligned_cols=81 Identities=26% Similarity=0.375 Sum_probs=73.6
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
.....+|||+|||+.+|+++|+++|+.||.+. .|.++.++ +|.++|+|||+|.+.++|.+|+.. |+..++|+.|+|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEE-EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCee-EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568999999999999999999999999776 78888876 689999999999999999999985 9999999999999
Q ss_pred ECCh
Q 029263 182 PSSH 185 (196)
Q Consensus 182 ~~~~ 185 (196)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9863
No 44
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.82 E-value=1.4e-21 Score=139.18 Aligned_cols=83 Identities=43% Similarity=0.695 Sum_probs=74.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECCh
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~~ 185 (196)
...+|||+|||+++|+++|+++|++||++ .|.|+.+++|+++|||||+|.+.++|++||.+|+..|+||.|+|.++++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~Gi~--~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCCCS--EEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe--EEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence 45789999999999999999999999943 6999999999999999999999999999997799999999999999987
Q ss_pred HHHHH
Q 029263 186 EEMDE 190 (196)
Q Consensus 186 ~~~~~ 190 (196)
.+...
T Consensus 123 ~~~~~ 127 (139)
T 2hgn_A 123 TGASN 127 (139)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 76543
No 45
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=5.6e-20 Score=120.49 Aligned_cols=80 Identities=20% Similarity=0.205 Sum_probs=72.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+.. ||..++|+.|+|.++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 457899999999999999999999999876 78998885 899999999999999999999975 999999999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 763
No 46
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=7.1e-20 Score=124.68 Aligned_cols=80 Identities=24% Similarity=0.379 Sum_probs=74.3
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
...+.+|||+|||+.+|+++|+++|++||.+. .|.++.+.+|.++|||||+|.+.++|.+|+.. |+..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLK-KAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999776 89999999999999999999999999999985 99999999999998
Q ss_pred CC
Q 029263 183 SS 184 (196)
Q Consensus 183 ~~ 184 (196)
++
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 47
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8e-20 Score=122.74 Aligned_cols=81 Identities=16% Similarity=0.404 Sum_probs=74.5
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.++.++ +|.++|||||+|.+.++|.+|+.+|+..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVT-EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEE-EEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3567999999999999999999999999776 78888875 799999999999999999999999999999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=6.9e-20 Score=122.06 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=73.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|++||.+. .|.++.+.+|.++|||||+|.+.++|.+|+. +|+..++|+.|+|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLT-KVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3568999999999999999999999999776 7999999899999999999999999999998 5999999999999988
Q ss_pred C
Q 029263 184 S 184 (196)
Q Consensus 184 ~ 184 (196)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 49
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.7e-20 Score=126.45 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=75.4
Q ss_pred cccEEEEcCCCC------CCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCC-e
Q 029263 106 HTGILRLRGLPF------SAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGS-R 176 (196)
Q Consensus 106 ~~~~l~v~nLp~------~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~g-r 176 (196)
.+.+|||+|||+ ++++++|+++|++||.+. +|.|+.++ +|+++|||||+|.+.++|.+|+. +||..|+| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~-~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVV-NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEe-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 467999999999 999999999999999776 79998887 69999999999999999999996 59999999 9
Q ss_pred EEEEEECChHHHH
Q 029263 177 YIELFPSSHEEMD 189 (196)
Q Consensus 177 ~i~V~~~~~~~~~ 189 (196)
.|.|.++.+.+-.
T Consensus 84 ~l~V~~a~~~~~~ 96 (100)
T 3ns6_A 84 RLFLYTMKDVERY 96 (100)
T ss_dssp BCEEEESHHHHHH
T ss_pred EEEEEECchhhhh
Confidence 9999999776543
No 50
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.3e-19 Score=122.64 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=72.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+++|+++|+++|+.|| +. .|.++.+. +|.++|||||+|.+.++|.+|+.+|+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IR-SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ce-EEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 3467999999999999999999999998 43 69998887 799999999999999999999966999999999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 51
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=1.7e-20 Score=123.96 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=67.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCC--CccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g--~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
.+|||+|||+++|+++|+++|++|| .+. ++.++.+. +|.++|||||+|.+.++|++|+. +||..++||.|.|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~-~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDIL-EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCC-CEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceE-EEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 3699999999999999999999999 665 79998886 89999999999999999999996 5999999999999999
Q ss_pred ChHH
Q 029263 184 SHEE 187 (196)
Q Consensus 184 ~~~~ 187 (196)
.+..
T Consensus 81 ~~~~ 84 (90)
T 3p5t_L 81 NKLE 84 (90)
T ss_dssp ----
T ss_pred CCCc
Confidence 7653
No 52
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=121.25 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=72.4
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccce--------EEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--------IHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLG 174 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~--------v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~ 174 (196)
....+|||+|||+++|+++|+++|+.||.+. . |.++.++ +|.++|||||+|.+.++|.+|+. +||..++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIK-TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBC-EETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEe-eccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3567999999999999999999999999876 6 8888885 89999999999999999999997 5999999
Q ss_pred CeEEEEEECC
Q 029263 175 SRYIELFPSS 184 (196)
Q Consensus 175 gr~i~V~~~~ 184 (196)
|+.|+|.+++
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 53
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.3e-20 Score=122.39 Aligned_cols=81 Identities=26% Similarity=0.475 Sum_probs=74.5
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+. +|+..|+|+.|+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLS-ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3567999999999999999999999999776 78888887 89999999999999999999995 599999999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 85 a~~~ 88 (99)
T 1whw_A 85 STIK 88 (99)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9765
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=6.3e-20 Score=119.73 Aligned_cols=78 Identities=27% Similarity=0.310 Sum_probs=71.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeC-CCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~-~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+++|+++|+++|++||.+. .|.++.+ .+|.++|+|||+|.+.++|.+|+. +||..++|+.|+|.++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEE-EEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 567999999999999999999999999776 7888777 589999999999999999999996 4999999999999987
Q ss_pred C
Q 029263 184 S 184 (196)
Q Consensus 184 ~ 184 (196)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 55
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=1.8e-19 Score=122.28 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=74.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCC---eEEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS---RYIELF 181 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~g---r~i~V~ 181 (196)
.+.+|||+|||+.+|+++|+++|+.||.+. .|.|+.+.+|.++|||||+|.+.++|.+|+.. |+..+.| +.|.|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVID-ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 467999999999999999999999999776 89999999999999999999999999999974 9999988 999999
Q ss_pred ECChH
Q 029263 182 PSSHE 186 (196)
Q Consensus 182 ~~~~~ 186 (196)
++.+.
T Consensus 93 ~a~~~ 97 (105)
T 2dnh_A 93 FADTD 97 (105)
T ss_dssp ESCSS
T ss_pred ECccC
Confidence 99754
No 56
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=119.67 Aligned_cols=79 Identities=18% Similarity=0.296 Sum_probs=72.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.++.++ +|.++|||||+|.+.++|.+|+. +|+..|+|+.|+|.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVV-KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEE-EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3457899999999999999999999999776 78888776 68999999999999999999996 599999999999998
Q ss_pred CC
Q 029263 183 SS 184 (196)
Q Consensus 183 ~~ 184 (196)
+.
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=2.7e-19 Score=123.41 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=74.8
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
.....+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+.. |+..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568999999999999999999999999876 79998885 899999999999999999999975 9999999999999
Q ss_pred ECChH
Q 029263 182 PSSHE 186 (196)
Q Consensus 182 ~~~~~ 186 (196)
++.+.
T Consensus 91 ~a~~~ 95 (115)
T 2dgo_A 91 WATRK 95 (115)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 99653
No 58
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=125.14 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=75.4
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.|+.+. +|.++|||||+|.+.++|.+|+.+|+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVR-DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEe-EEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 3457999999999999999999999999776 78888877 589999999999999999999966999999999999998
Q ss_pred ChHHHH
Q 029263 184 SHEEMD 189 (196)
Q Consensus 184 ~~~~~~ 189 (196)
.+....
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 766543
No 59
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=121.87 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=74.4
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.++.++ +|.++|||||+|.+.++|.+|+. +|+..|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSIS-RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4568999999999999999999999999776 79998885 89999999999999999999998 599999999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8653
No 60
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=131.63 Aligned_cols=84 Identities=10% Similarity=0.220 Sum_probs=75.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCC--CccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g--~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
...+|||+|||+++|+++|+++|+.|| .+. .|.++.|. +|.++|||||+|.+.++|.+|+.. ||..|+||.|.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~-~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVV-ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 357999999999999999999999999 565 78998886 899999999999999999999987 9999999999999
Q ss_pred ECChHHHHH
Q 029263 182 PSSHEEMDE 190 (196)
Q Consensus 182 ~~~~~~~~~ 190 (196)
++.+.....
T Consensus 133 ~a~~~~~~~ 141 (156)
T 3n9u_C 133 PATRQNLSQ 141 (156)
T ss_dssp ECCHHHHHH
T ss_pred EcCCCcchh
Confidence 998875443
No 61
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=4.1e-20 Score=117.87 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=69.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
+|||+|||+++|+++|+++|++||.+. .|.++.++ +|.++|||||+|.+.++|++|+.+|+..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVD-DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCS-EECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999999999999999776 78888886 899999999999999999999999999999999999865
No 62
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=1.2e-19 Score=119.38 Aligned_cols=79 Identities=19% Similarity=0.409 Sum_probs=73.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
...+|||+|||+++|+++|+++|++||.+. .+.++.+. +|.++|+|||+|.+.++|.+|+.+|+..++|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVN-RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEE-EEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 357899999999999999999999999776 89998886 8999999999999999999999669999999999999986
Q ss_pred h
Q 029263 185 H 185 (196)
Q Consensus 185 ~ 185 (196)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 63
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=121.81 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=74.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.++.+ +|.++|||||+|.+.++|.+|+.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTIT-SAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEE-EEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3567999999999999999999999999876 7899988 999999999999999999999975 999999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 91 ~~~ 93 (103)
T 2d9p_A 91 QRK 93 (103)
T ss_dssp SSC
T ss_pred ccc
Confidence 764
No 64
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=120.83 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=73.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceE-EEEeC-CCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI-HITMN-SDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v-~l~~~-~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
...+|||+|||+.+|+++|+++|+.||.+. .+ .++.+ .+|.++|||||+|.+.++|++|+. +|+..|+|+.|+|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBS-SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457999999999999999999999999776 67 88888 589999999999999999999998 599999999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 9754
No 65
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=7.2e-20 Score=134.22 Aligned_cols=84 Identities=21% Similarity=0.240 Sum_probs=74.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
..+.+|||+|||+.+|+++|+++|+.||.+. .|.|+.+. +|.++|||||+|.+.++|.+|+. +||..|+|+.|.|.+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEE-EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999776 78998885 89999999999999999999997 599999999999999
Q ss_pred CChHHHH
Q 029263 183 SSHEEMD 189 (196)
Q Consensus 183 ~~~~~~~ 189 (196)
+.+..-.
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9765433
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=122.68 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=74.5
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+.. |+..|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVV-NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3567999999999999999999999999776 78888887 899999999999999999999985 99999999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 92 a~~~ 95 (105)
T 1x5u_A 92 ASAH 95 (105)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9765
No 67
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.1e-19 Score=119.57 Aligned_cols=79 Identities=30% Similarity=0.576 Sum_probs=70.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEE-EeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI-TMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l-~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+.+|+++|+++|+.||.+. .+.+ ....+|.++|||||+|.+.++|++|+.. |+..|+|+.|+|.++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCT-TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCcc-ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 457899999999999999999999999776 4444 4456899999999999999999999964 999999999999998
Q ss_pred Ch
Q 029263 184 SH 185 (196)
Q Consensus 184 ~~ 185 (196)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=3.9e-19 Score=122.59 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=74.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+++|+++|+++|+.||.+. .|.|+.+. +|.++|||||+|.+.++|++|+.. |+..|+|+.|+|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVV-SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCS-EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3457899999999999999999999999776 79998887 899999999999999999999965 99999999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8754
No 69
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=1.1e-19 Score=125.49 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=70.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECCh
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 185 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 185 (196)
..+|||+|||+++|+++|+++|+.||.+. +|+|+.+.. .++|||||+|.+.++|++|+.. |+..|+||.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~-~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNIL-SCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEE-EEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 35799999999999999999999999876 799988864 4899999999999999999965 99999999999999865
Q ss_pred H
Q 029263 186 E 186 (196)
Q Consensus 186 ~ 186 (196)
.
T Consensus 83 ~ 83 (115)
T 4f25_A 83 R 83 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 70
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=119.70 Aligned_cols=80 Identities=21% Similarity=0.354 Sum_probs=73.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
.+.+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+. +|+..|+|+.|+|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKID-NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 457999999999999999999999999776 78888876 79999999999999999999998 5999999999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 653
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=121.81 Aligned_cols=79 Identities=18% Similarity=0.368 Sum_probs=72.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-C-CCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D-GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~-g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+++|+++|+++|+.|| +. .|.++.+. + |.++|||||+|.+.++|++|+.+|+..|+|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~-~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-IS-AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EE-EEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ce-EEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 457999999999999999999999999 55 78988887 3 89999999999999999999966999999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 92 ~~~ 94 (104)
T 1wi8_A 92 DQA 94 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 72
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=119.80 Aligned_cols=81 Identities=25% Similarity=0.382 Sum_probs=73.2
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
.....+|||+|||+++|+++|+++|+.||.+. .|.++.+..+ ++|||||+|.+.++|.+|+.. |+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEE-EEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999776 7888888765 899999999999999999975 99999999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2cq3_A 90 ATAR 93 (103)
T ss_dssp CCSS
T ss_pred cccC
Confidence 9764
No 73
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=124.49 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=74.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
...+|||+|||+++|+++|+++|+.||.+. .|.++.+.+|.++|||||+|.+.++|++|+.. ||..|+|+.|.|.++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPIS-EVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCS-EEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 457999999999999999999999999776 79999998999999999999999999999975 9999999999999997
Q ss_pred hH
Q 029263 185 HE 186 (196)
Q Consensus 185 ~~ 186 (196)
+.
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 74
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=121.67 Aligned_cols=81 Identities=26% Similarity=0.286 Sum_probs=73.7
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+.. |+..|+|+.|+|.+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCC-CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3567899999999999999999999999776 78888774 899999999999999999999964 99999999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 89 a~~~ 92 (102)
T 2cqb_A 89 AKPM 92 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9754
No 75
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=121.78 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=74.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
..+.+|||+|||+.+|+++|+++|+.||.+. .|.++.+.+|.++|||||+|.+.++|.+|+. +|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVV-RADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 3467899999999999999999999999776 7999999999999999999999999999998 5999999999999998
Q ss_pred Ch
Q 029263 184 SH 185 (196)
Q Consensus 184 ~~ 185 (196)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 76
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=9.3e-19 Score=122.30 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=75.3
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
...+.+|||+|||+.+|+++|+++|+.||.+. .|.++.+.+|.++|||||+|.+.++|.+|+. +||..++|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLK-KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCS-EEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999776 7999988899999999999999999999998 599999999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 8653
No 77
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2e-19 Score=120.14 Aligned_cols=80 Identities=25% Similarity=0.498 Sum_probs=73.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
+.+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+.. ||..++|+.|+|.++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVI-NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999776 78888875 799999999999999999999965 9999999999999997
Q ss_pred hHH
Q 029263 185 HEE 187 (196)
Q Consensus 185 ~~~ 187 (196)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 78
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=121.81 Aligned_cols=82 Identities=26% Similarity=0.388 Sum_probs=74.0
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELF 181 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~ 181 (196)
...+.+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+. +||..++|+.|+|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIE-SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEE-EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999776 78888775 79999999999999999999997 49999999999999
Q ss_pred ECChH
Q 029263 182 PSSHE 186 (196)
Q Consensus 182 ~~~~~ 186 (196)
++.+.
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98753
No 79
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=2.6e-19 Score=119.24 Aligned_cols=79 Identities=29% Similarity=0.557 Sum_probs=69.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEe-CCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM-NSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~-~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+.+|+++|+++|++||.+. .+.++. ..+|.++|||||+|.+.++|++|+.. |+..|+||.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCT-TCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcc-ceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 357999999999999999999999999776 455554 45899999999999999999999974 999999999999988
Q ss_pred Ch
Q 029263 184 SH 185 (196)
Q Consensus 184 ~~ 185 (196)
+.
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 80
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=121.41 Aligned_cols=81 Identities=22% Similarity=0.389 Sum_probs=73.4
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+. +|+..|+|+.|+|.+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQIS-EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCC-EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567999999999999999999999999776 78888775 88899999999999999999995 599999999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 8653
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=121.67 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=73.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-C------CCccCCe
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-D------RMTLGSR 176 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~------g~~l~gr 176 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+.. | +..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLK-YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3567899999999999999999999999776 78888876 789999999999999999999975 8 9999999
Q ss_pred EEEEEECChH
Q 029263 177 YIELFPSSHE 186 (196)
Q Consensus 177 ~i~V~~~~~~ 186 (196)
.|.|.++.+.
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999998754
No 82
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=122.51 Aligned_cols=83 Identities=22% Similarity=0.329 Sum_probs=75.3
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~ 182 (196)
.....+|||+|||+.+|+++|+++|+.||.+. .|.++.++ +|.++|||||+|.+.++|.+|+..|+..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVV-DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEE-EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 34568999999999999999999999999776 78898885 89999999999999999999998899999999999999
Q ss_pred CChHH
Q 029263 183 SSHEE 187 (196)
Q Consensus 183 ~~~~~ 187 (196)
+.+..
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87653
No 83
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=3.3e-19 Score=118.01 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=72.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|++||.+. .|.++. .+|.++|||||+|.+.++|.+|+.. |+..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~-~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVL-YADIKM-ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEE-EEEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEc-cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3567999999999999999999999999776 788887 4889999999999999999999975 999999999999998
Q ss_pred Ch
Q 029263 184 SH 185 (196)
Q Consensus 184 ~~ 185 (196)
.+
T Consensus 84 ~~ 85 (92)
T 2dgv_A 84 RN 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 84
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=9e-20 Score=129.47 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=73.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|++|+.. |+..|+|+.|+|.+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG-DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCS-EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999776 78888776 899999999999999999999975 99999999999999
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
+.+
T Consensus 124 a~~ 126 (135)
T 2lea_A 124 ARY 126 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 85
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=121.51 Aligned_cols=80 Identities=25% Similarity=0.313 Sum_probs=73.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
..+.+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+.. ||..|+|+.|.|.+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeE-EEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3567899999999999999999999999776 78888876 799999999999999999999974 99999999999999
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
+.+
T Consensus 100 a~~ 102 (106)
T 1p27_B 100 CFV 102 (106)
T ss_dssp SEE
T ss_pred ecC
Confidence 864
No 86
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.4e-19 Score=118.83 Aligned_cols=80 Identities=21% Similarity=0.391 Sum_probs=72.9
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVL-MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeE-EEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 3467899999999999999999999999776 78998886 79999999999999999999998 578999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 91 ~~~ 93 (103)
T 2cqg_A 91 NSK 93 (103)
T ss_dssp CTT
T ss_pred CCC
Confidence 765
No 87
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=121.65 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=73.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+. +|+..|+|+.|.|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVG-DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3567999999999999999999999999776 78888776 69999999999999999999998 599999999999999
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
+.+
T Consensus 90 a~~ 92 (103)
T 2dnm_A 90 ARY 92 (103)
T ss_dssp CSS
T ss_pred CCc
Confidence 964
No 88
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-19 Score=122.11 Aligned_cols=85 Identities=19% Similarity=0.369 Sum_probs=76.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+. +||..++|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVV-SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCS-EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCee-EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 457899999999999999999999999776 78888775 89999999999999999999997 5999999999999999
Q ss_pred ChHHHHHH
Q 029263 184 SHEEMDEA 191 (196)
Q Consensus 184 ~~~~~~~~ 191 (196)
.+......
T Consensus 86 ~~~~~~~~ 93 (104)
T 1p1t_A 86 ASEKNKEE 93 (104)
T ss_dssp TCTTHHHH
T ss_pred CCccchhh
Confidence 87755544
No 89
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=120.31 Aligned_cols=81 Identities=25% Similarity=0.387 Sum_probs=73.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC--CCCCceEEEEEeCCHHHHHHHHH-h-CCCccCCeEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS--DGRPTGEAFVEFANAEDSKAAMA-K-DRMTLGSRYIEL 180 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~--~g~~~G~afV~F~~~~~A~~Al~-~-~g~~l~gr~i~V 180 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+. + |+..|+|+.|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELK-TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeE-EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 3567899999999999999999999999776 78888873 89999999999999999999996 6 899999999999
Q ss_pred EECChH
Q 029263 181 FPSSHE 186 (196)
Q Consensus 181 ~~~~~~ 186 (196)
.++.+.
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999764
No 90
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.5e-19 Score=118.53 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=72.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.++.+..+ ++|||||+|.+.++|.+|+. +|+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCK-SCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEE-EEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEe-EEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 3568999999999999999999999999776 7888887644 79999999999999999997 5999999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 764
No 91
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=6.6e-20 Score=116.88 Aligned_cols=74 Identities=24% Similarity=0.376 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
+|||+|||+++|+++|+++|++||.+. .|.++.++ +|.++|||||+|.+.++|.+|+..++..++|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVE-SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCS-EECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999776 78888775 799999999999999999999999999999999999875
No 92
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-19 Score=121.99 Aligned_cols=80 Identities=19% Similarity=0.327 Sum_probs=73.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
...+|||+|||+++|+++|+++|+.||.+. .|.|+.+. +|.++|||||+|.+.++|.+|+..|+..|+|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLT-DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCS-EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 458999999999999999999999999776 78998885 7999999999999999999999889999999999999987
Q ss_pred hH
Q 029263 185 HE 186 (196)
Q Consensus 185 ~~ 186 (196)
+.
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 93
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=121.21 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=74.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhc-CCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCc-cCCeEEEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMT-LGSRYIELFP 182 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~-~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~-l~gr~i~V~~ 182 (196)
...+|||+|||+++|+++|+++|+. ||.+. .|.++.+.+|.++|||||+|.+.++|.+|+.. |+.. |+|+.|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR-GGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEE-EEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeE-EEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 4578999999999999999999999 99776 79999998999999999999999999999984 9999 9999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 87 a~~~ 90 (104)
T 2dhg_A 87 AIPK 90 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8654
No 94
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.7e-19 Score=120.70 Aligned_cols=82 Identities=26% Similarity=0.417 Sum_probs=73.7
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccc-------eEEEEeC-CCCCCceEEEEEeCCHHHHHHHHHh-CCCccCC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSED-------SIHITMN-SDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS 175 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~-------~v~l~~~-~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~g 175 (196)
....+|||+|||+.+|+++|+++|+.||.+.. .|.++.+ .+|.++|||||+|.+.++|.+|+.. |+..|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 35679999999999999999999999997652 4888888 5899999999999999999999975 9999999
Q ss_pred eEEEEEECChH
Q 029263 176 RYIELFPSSHE 186 (196)
Q Consensus 176 r~i~V~~~~~~ 186 (196)
+.|+|.++.+.
T Consensus 93 ~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 SKLKVSLARKK 103 (113)
T ss_dssp EECEEECSSCC
T ss_pred CEEEEEECCCC
Confidence 99999998754
No 95
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-20 Score=123.27 Aligned_cols=80 Identities=19% Similarity=0.356 Sum_probs=71.5
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC--CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS--DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~--~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+++|+++|+++|+.|| +. .|.++.+. +|+++|||||+|.+.++|.+|+.+||..|+|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~-~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-IS-AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EE-EEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-Ce-EEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 3568999999999999999999999999 65 79998885 89999999999999999999996699999999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8653
No 96
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=3.8e-19 Score=121.69 Aligned_cols=81 Identities=17% Similarity=0.291 Sum_probs=72.4
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+..++..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVK-ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEE-EEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeE-EEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 4567999999999999999999999999876 78998886 799999999999999999999988779999999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 102 ~~~ 104 (109)
T 2rs2_A 102 FPR 104 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 97
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=126.79 Aligned_cols=81 Identities=12% Similarity=0.228 Sum_probs=73.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccc-eEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCC----ccCCeE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSED-SIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRM----TLGSRY 177 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~-~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~----~l~gr~ 177 (196)
....+|||+|||+++|+++|+++|++||.+.. .|+|++++ +|.++|||||+|.+. +|.+|+.. ||. .|+||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45679999999999999999999999997751 28999988 999999999999999 99999975 999 999999
Q ss_pred EEEEECChH
Q 029263 178 IELFPSSHE 186 (196)
Q Consensus 178 i~V~~~~~~ 186 (196)
|.|.++.+.
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999753
No 98
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=2.4e-19 Score=126.30 Aligned_cols=80 Identities=26% Similarity=0.353 Sum_probs=73.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+++|+++|+++|+.||.+. .|.++.++ +|.++|||||+|.+.++|++|+.. ||..|+|+.|.|.+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEE-EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999776 78888875 789999999999999999999975 99999999999999
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
+.+
T Consensus 123 a~~ 125 (129)
T 2kxn_B 123 SIT 125 (129)
T ss_dssp CSS
T ss_pred ecC
Confidence 865
No 99
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.7e-19 Score=121.20 Aligned_cols=81 Identities=23% Similarity=0.357 Sum_probs=72.8
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
.....+|||+|||+++|+++|+++|+.||.+. .|.++.+.. .++|||||+|.+.++|++|+.. ||..++|+.|+|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCS-CEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEE-EEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999776 789888764 4899999999999999999975 99999999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 100
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=1e-18 Score=120.99 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=72.1
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
.....+|||+|||+++|+++|+++|+.||.+. .|.++.++ +|.++|||||+|.+.++|++|+.. ||..|+|+.|+|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVI-SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEE-EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999999999999999999999776 78888775 799999999999999999999975 9999999999999
Q ss_pred EC
Q 029263 182 PS 183 (196)
Q Consensus 182 ~~ 183 (196)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 101
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=120.01 Aligned_cols=79 Identities=16% Similarity=0.293 Sum_probs=72.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.|+.++ +|.++|||||+|.+.++|++|+.. |+ .|.|+.|+|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIE-EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEE-EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCee-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 3568999999999999999999999999776 78888875 799999999999999999999987 77 89999999999
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
+.+
T Consensus 93 a~~ 95 (116)
T 2cqd_A 93 AYL 95 (116)
T ss_dssp STT
T ss_pred ccc
Confidence 864
No 102
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=4.6e-19 Score=120.43 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=73.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCcc---CCeEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTL---GSRYIE 179 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l---~gr~i~ 179 (196)
....+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+. +|+..+ .|+.|.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIY-ELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCC-EEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3567999999999999999999999999776 78888876 79999999999999999999997 599887 899999
Q ss_pred EEECChH
Q 029263 180 LFPSSHE 186 (196)
Q Consensus 180 V~~~~~~ 186 (196)
|.++.+.
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9999754
No 103
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.3e-19 Score=117.97 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=73.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeE----E
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRY----I 178 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~----i 178 (196)
....+|||+|||+++|+++|+++|++||.+...|.++.++ +|.++|||||+|.+.++|++|+.. ||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567999999999999999999999999654368888886 899999999999999999999985 999999999 9
Q ss_pred EEEECCh
Q 029263 179 ELFPSSH 185 (196)
Q Consensus 179 ~V~~~~~ 185 (196)
+|.++++
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9999864
No 104
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=4.8e-19 Score=121.15 Aligned_cols=80 Identities=23% Similarity=0.258 Sum_probs=73.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
..+.+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+. +||..|+|+.|.|.+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEE-EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3567999999999999999999999999776 78888775 89999999999999999999997 599999999999999
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
+.+
T Consensus 103 a~~ 105 (110)
T 1oo0_B 103 CFV 105 (110)
T ss_dssp SEE
T ss_pred ccc
Confidence 864
No 105
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.9e-19 Score=118.60 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=71.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC----CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS----DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 180 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~----~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V 180 (196)
...+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+.. |+..|+|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIK-SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 457899999999999999999999999776 78887765 348999999999999999999985 999999999999
Q ss_pred EECChH
Q 029263 181 FPSSHE 186 (196)
Q Consensus 181 ~~~~~~ 186 (196)
.++.+.
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 998654
No 106
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.1e-19 Score=117.55 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=70.6
Q ss_pred cccEEEEcCCCCCCCHHHHH----HHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIM----DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIEL 180 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~----~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V 180 (196)
...+|||+|||+.+|+++|+ ++|++||.+. .|.++.+..+ +|||||+|.+.++|.+|+. +||..|+||.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~-~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVK-SVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE-EEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEE-EEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45789999999999999999 9999999776 7999888766 8999999999999999997 5999999999999
Q ss_pred EECCh
Q 029263 181 FPSSH 185 (196)
Q Consensus 181 ~~~~~ 185 (196)
.++.+
T Consensus 85 ~~a~~ 89 (96)
T 2dgx_A 85 SLATG 89 (96)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99865
No 107
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=117.28 Aligned_cols=78 Identities=28% Similarity=0.465 Sum_probs=71.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+++|+++|+++|++||. |.++.+.+|.++|||||+|.+.++|++|+. +|+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~----v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATF----IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSE----EECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCE----EEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 35689999999999999999999999984 567777899999999999999999999998 5999999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 108
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=6.3e-19 Score=118.09 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=66.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCc--cCCeEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMT--LGSRYIELF 181 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~--l~gr~i~V~ 181 (196)
.++.+|||+|||+.+|+++|+++|++||.+. +|.+++ ++|+|||+|.+.++|.+|+.. |+.. ++||+|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~-~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPIS-YVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEE-EEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 3567999999999999999999999999876 777773 578999999999999999975 7664 899999999
Q ss_pred ECChH
Q 029263 182 PSSHE 186 (196)
Q Consensus 182 ~~~~~ 186 (196)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99764
No 109
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=4.5e-19 Score=116.33 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=70.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCC-CceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGR-PTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~-~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
...+|||+|||+++|+++|+++|++||.+. .+.++.+. ++. ++|+|||+|.+.++|.+|+.. ||..++|+.|+|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIK-MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 356899999999999999999999999776 78887776 333 899999999999999999985 99999999999999
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
+.+
T Consensus 82 a~~ 84 (88)
T 4a8x_A 82 VLA 84 (88)
T ss_dssp ECC
T ss_pred CCC
Confidence 865
No 110
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-19 Score=113.96 Aligned_cols=73 Identities=18% Similarity=0.333 Sum_probs=68.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
+|||+|||+++|+++|+++|++||.+. .+.++.++ +|.++|+|||+|.+.++|.+|+.. | ..++|+.|.|.++
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVK-ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCC-CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 699999999999999999999999776 78998886 799999999999999999999987 7 9999999999886
No 111
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=122.71 Aligned_cols=79 Identities=28% Similarity=0.307 Sum_probs=71.3
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELF 181 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~ 181 (196)
.....+|||+|||+.+|+++|+++|++||.+. .|.++.++ +|.++|||||+|.+.++|.+|+. +||..|+|+.|+|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEE-EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEE-EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568999999999999999999999999876 78888874 89999999999999999999996 49999999999998
Q ss_pred EC
Q 029263 182 PS 183 (196)
Q Consensus 182 ~~ 183 (196)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 112
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=8.3e-19 Score=122.48 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=72.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
...+|||+|||+++|+++|+++|+.||.+. .|.++.++ +|.++|||||+|.+.++|.+|+.+||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSIN-RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEE-EEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 357999999999999999999999999776 78888874 8999999999999999999999669999999999999986
Q ss_pred h
Q 029263 185 H 185 (196)
Q Consensus 185 ~ 185 (196)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 113
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=6.7e-19 Score=119.60 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=70.9
Q ss_pred cccEEEEcCCCCCC------CHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCe-E
Q 029263 106 HTGILRLRGLPFSA------GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSR-Y 177 (196)
Q Consensus 106 ~~~~l~v~nLp~~~------t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr-~ 177 (196)
.+.+|||+|||+.+ |+++|+++|++||.+. .|.++ ..+|.++|||||+|.+.++|.+|+.. ||..|+|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~-~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT-NDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEE-EEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEE-EEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35789999999999 7899999999999776 67777 57899999999999999999999985 99999999 9
Q ss_pred EEEEECCh
Q 029263 178 IELFPSSH 185 (196)
Q Consensus 178 i~V~~~~~ 185 (196)
|.|.+++.
T Consensus 92 l~V~~a~~ 99 (105)
T 2nlw_A 92 FRVNLFTD 99 (105)
T ss_dssp EEEECSCC
T ss_pred EEEEEcch
Confidence 99999864
No 114
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.7e-19 Score=119.85 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=67.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hC--CCccCCeEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KD--RMTLGSRYIELF 181 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~--g~~l~gr~i~V~ 181 (196)
....+|||+|||+++|+++|+++|++||.+. .|.++.+ +|||||+|.+.++|..|+. ++ +..|.||+|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~-~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVT-NLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEE-EEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3567999999999999999999999999776 7888754 7899999999999999997 44 578999999999
Q ss_pred ECChH
Q 029263 182 PSSHE 186 (196)
Q Consensus 182 ~~~~~ 186 (196)
++.+.
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 99764
No 115
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.6e-18 Score=116.53 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=73.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCcc--------CC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTL--------GS 175 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l--------~g 175 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.++.+.+|.++|||||+|.+.++|.+|+. +||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVI-STRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3457999999999999999999999999776 7999999899999999999999999999997 499999 68
Q ss_pred eEEEEEECCh
Q 029263 176 RYIELFPSSH 185 (196)
Q Consensus 176 r~i~V~~~~~ 185 (196)
++|.|.++.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8899999874
No 116
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=1.7e-18 Score=133.34 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=76.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCC--CccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELF 181 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g--~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~ 181 (196)
...+|||+|||+++|+++|+++|+.|| .+. .|.|+.+. +|+++|||||+|.+.++|.+||. +|+..|+|+.|.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~-~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDIL-EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEE-EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 456899999999999999999999999 565 79999886 99999999999999999999997 49999999999999
Q ss_pred ECChHHHHHH
Q 029263 182 PSSHEEMDEA 191 (196)
Q Consensus 182 ~~~~~~~~~~ 191 (196)
++.+......
T Consensus 146 ~a~~~~~~~~ 155 (229)
T 3q2s_C 146 PVNKQFLSQF 155 (229)
T ss_dssp ECCHHHHHHH
T ss_pred ECCCCccchh
Confidence 9998765543
No 117
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=122.92 Aligned_cols=82 Identities=15% Similarity=0.262 Sum_probs=74.3
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 181 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~ 181 (196)
.....+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+.. |+..|+|+.|+|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIE-SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEE-EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34568999999999999999999999999776 78888776 789999999999999999999975 9999999999999
Q ss_pred ECChH
Q 029263 182 PSSHE 186 (196)
Q Consensus 182 ~~~~~ 186 (196)
++.+.
T Consensus 118 ~a~~~ 122 (139)
T 1u6f_A 118 LAASG 122 (139)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 99754
No 118
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-19 Score=115.37 Aligned_cols=71 Identities=20% Similarity=0.342 Sum_probs=64.8
Q ss_pred cEEEEcCCCCCC------CHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCe-EEE
Q 029263 108 GILRLRGLPFSA------GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSR-YIE 179 (196)
Q Consensus 108 ~~l~v~nLp~~~------t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr-~i~ 179 (196)
.+|||+|||+.+ |+++|+++|++||.+. .|.++ ..+|.++|||||+|.+.++|.+|+.. ||..++|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~-~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT-NDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEE-EEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeE-EEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 7899999999999776 67777 56899999999999999999999975 99999999 887
Q ss_pred E
Q 029263 180 L 180 (196)
Q Consensus 180 V 180 (196)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 119
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=6.7e-19 Score=118.83 Aligned_cols=80 Identities=18% Similarity=0.368 Sum_probs=74.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
....+|||+|||+++|+++|+++|+.||.+. .|.++.+.+|.++|||||+|.+.++|.+|+. |+..|+|+.|.|..+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVK-EVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 3457999999999999999999999999776 8999999899999999999999999999999 9999999999999886
Q ss_pred hH
Q 029263 185 HE 186 (196)
Q Consensus 185 ~~ 186 (196)
+.
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 44
No 120
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=114.90 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=69.9
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+++|+++|+++|+.|+ .|.++.+. +|.++|||||+|.+.++|.+|+. +|+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~----~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV----RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS----EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe----EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3567899999999999999999999863 47777775 89999999999999999999997 599999999999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9764
No 121
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=119.19 Aligned_cols=80 Identities=15% Similarity=0.344 Sum_probs=71.4
Q ss_pred cccEEEEcCCCCCCCHHHHH---HHhhcCCCccceEEEEeCC----CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeE
Q 029263 106 HTGILRLRGLPFSAGKDDIM---DFFKDFVLSEDSIHITMNS----DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRY 177 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~---~~F~~~g~~~~~v~l~~~~----~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~ 177 (196)
...+|||+|||+++|+++|+ ++|++||.+. .|.++.+. .+.++|||||+|.+.++|++|+.. |+..|+|+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~-~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH-KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEE-EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEE-EEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 45789999999999999999 9999999776 78888775 236779999999999999999986 999999999
Q ss_pred EEEEECChH
Q 029263 178 IELFPSSHE 186 (196)
Q Consensus 178 i~V~~~~~~ 186 (196)
|+|.++.+.
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999999764
No 122
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=1.8e-18 Score=121.12 Aligned_cols=80 Identities=25% Similarity=0.309 Sum_probs=73.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
..+.+|||+|||+.+|+++|+++|+.||.+. .|.|+.+. +|.++|||||+|.+.++|.+|+. +|+..|+|+.|.|.+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3467999999999999999999999999776 78888886 89999999999999999999996 599999999999999
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
+.+
T Consensus 99 a~~ 101 (126)
T 3ex7_B 99 CFV 101 (126)
T ss_dssp SEE
T ss_pred ecC
Confidence 954
No 123
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-19 Score=116.73 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=70.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
.+.+|||+|||+.+|+++|+++|++||.+. .+.++.++ +|.++|||||+|.+.++|.+|+.. ||..++|+.|+|..+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIV-STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEE-EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467999999999999999999999999776 78888875 799999999999999999999974 999999999988765
Q ss_pred C
Q 029263 184 S 184 (196)
Q Consensus 184 ~ 184 (196)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 124
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=4.1e-18 Score=123.65 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=73.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.|+.+. ++.++|||||+|.+.++|++|+.. |+..|+|+.|+|.+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIK-KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4568999999999999999999999999876 79998887 799999999999999999999985 99999999999999
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
+.+
T Consensus 116 a~~ 118 (156)
T 1h2v_Z 116 DAG 118 (156)
T ss_dssp ESC
T ss_pred CCC
Confidence 964
No 125
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.1e-18 Score=114.40 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=67.4
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh---CCCccCCeEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK---DRMTLGSRYIELF 181 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~---~g~~l~gr~i~V~ 181 (196)
..+.+|||+|||+.+|+++|+++|++||.+. .|.++.+ +|||||+|.+.++|.+|+.. ++..+.||+|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~-~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVT-NILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 3567999999999999999999999999776 6777753 78999999999999999963 5788999999999
Q ss_pred ECChHH
Q 029263 182 PSSHEE 187 (196)
Q Consensus 182 ~~~~~~ 187 (196)
++...+
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 997643
No 126
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=114.19 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=69.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+++|+++|+++|+.||.+. .|.+.. ++.++|||||+|.+.++|.+|+. +|+..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR-DIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3467999999999999999999999999776 677744 46689999999999999999995 5999999999999998
Q ss_pred Ch
Q 029263 184 SH 185 (196)
Q Consensus 184 ~~ 185 (196)
.+
T Consensus 97 ~~ 98 (109)
T 1x4a_A 97 RS 98 (109)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 127
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=1.8e-18 Score=119.39 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=57.7
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
..|+++|+++|+.||.|.+|.+....+.++|||||+|.+.++|++|| ++++..++|+.|.|..+.+.....
T Consensus 16 ~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~-------- 87 (115)
T 4f25_A 16 SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE-------- 87 (115)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC----------
T ss_pred CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccc--------
Confidence 47999999999999999998654334568999999999999999999 589999999999997665221000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHH
Q 029263 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 123 (196)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~ 123 (196)
. ...........|||+|||+++|++.
T Consensus 88 -------------~---~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 88 -------------A---ELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------------------------------
T ss_pred -------------c---ccccccCCCCceEeCCCCCCccccc
Confidence 0 0000111234699999999999874
No 128
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=5.1e-19 Score=119.20 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=70.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECCh
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~~ 185 (196)
...+|||+|||+++|+++|+++|+.||.+.. +.+....+|.++|||||+|.+.++|.+|+.+|+..|+|+.|.|.++.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 4679999999999999999999999997763 333333478999999999999999999999999999999999999865
Q ss_pred H
Q 029263 186 E 186 (196)
Q Consensus 186 ~ 186 (196)
.
T Consensus 95 ~ 95 (101)
T 1fj7_A 95 R 95 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 129
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=118.84 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=67.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-C--CCccCCeEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-D--RMTLGSRYIELF 181 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~--g~~l~gr~i~V~ 181 (196)
..+.+|||+|||+++|+++|+++|++||.+. .|.++.+ +|||||+|.+.++|.+|+.. + +..|+||+|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~-~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVT-NLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCC-EEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 3467999999999999999999999999776 7888854 78999999999999999974 5 578999999999
Q ss_pred ECChHH
Q 029263 182 PSSHEE 187 (196)
Q Consensus 182 ~~~~~~ 187 (196)
++.+.+
T Consensus 103 ~a~~k~ 108 (119)
T 2ad9_A 103 FSNHKE 108 (119)
T ss_dssp ECSSSS
T ss_pred EccCCC
Confidence 997653
No 130
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=4.9e-19 Score=116.77 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=69.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECCh
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 185 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 185 (196)
++|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.+ |.+|+.. ||..++|+.|+|.++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVF-NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCS-EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEE-EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4799999999999999999999999776 78888876 6999999999999999 9999976 99999999999999977
Q ss_pred HHH
Q 029263 186 EEM 188 (196)
Q Consensus 186 ~~~ 188 (196)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 131
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=1.1e-18 Score=145.98 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=73.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+.+|+++|.++|+.||.+. .|.|+.+. +|.++|||||+|.+.++|.+||.. ||..|+|+.|.|.++
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIK-RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCee-EEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 457899999999999999999999999776 78888885 899999999999999999999965 999999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 754
No 132
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=3e-18 Score=117.43 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=67.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCC-CccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g-~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+++|+++|+++|++|| .+. .+.+.. +.++|||||+|.+.++|++|+.. ||..|+||.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~-~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETT-FSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCS-EEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeE-EEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 457899999999999999999999999 665 566642 35889999999999999999965 999999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 754
No 133
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=116.86 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=70.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCC-ccceEEEE-eCC-CCCCceEEEEEeCCHHHHHHHHHh-C--CCccCCeEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVL-SEDSIHIT-MNS-DGRPTGEAFVEFANAEDSKAAMAK-D--RMTLGSRYIE 179 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~-~~~~v~l~-~~~-~g~~~G~afV~F~~~~~A~~Al~~-~--g~~l~gr~i~ 179 (196)
...+|||+|||+.+|+++|+++|+.||. +. .|.++ .+. +|.++|||||+|.+.++|.+|+.. | +..++|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~-~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVL-DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEE-EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCce-EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 4578999999999999999999999986 65 67776 444 789999999999999999999974 5 5899999999
Q ss_pred EEECChH
Q 029263 180 LFPSSHE 186 (196)
Q Consensus 180 V~~~~~~ 186 (196)
|.++.+.
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9999754
No 134
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=120.41 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=68.9
Q ss_pred cccEEEEcCCCCCCCHHHHH----HHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIM----DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 180 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~----~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V 180 (196)
.+.+|||+|||+.+++++|+ ++|++||.+. .|.+. .+|.++|||||+|.+.++|..|+.. ||..|.|++|.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~-~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDIL-DIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE-EEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeE-EEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 46789999999999999876 7999999765 55553 4788999999999999999999965 999999999999
Q ss_pred EECChHH
Q 029263 181 FPSSHEE 187 (196)
Q Consensus 181 ~~~~~~~ 187 (196)
.++....
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9997653
No 135
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=115.52 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=65.1
Q ss_pred cccEEEEcCCCC-CCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CC--CccCCeEEEEE
Q 029263 106 HTGILRLRGLPF-SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DR--MTLGSRYIELF 181 (196)
Q Consensus 106 ~~~~l~v~nLp~-~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g--~~l~gr~i~V~ 181 (196)
.+.+|||+|||+ .+|+++|+++|++||.+. +|.++.+ +|||||+|.+.++|.+|+.. |+ ..|.||+|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~-~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVIS-NHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEE-EEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEE-EEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 567999999999 999999999999999776 7888753 47999999999999999964 64 56999999999
Q ss_pred ECCh
Q 029263 182 PSSH 185 (196)
Q Consensus 182 ~~~~ 185 (196)
++..
T Consensus 88 ~a~~ 91 (102)
T 1x4d_A 88 LSQK 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9874
No 136
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=111.81 Aligned_cols=77 Identities=14% Similarity=0.277 Sum_probs=67.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|+.||.+. +.++. +.++|||||+|.+.++|.+|+.. ||..|+|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~--~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP--LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC--SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE--EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3467999999999999999999999999775 45553 47889999999999999999965 999999999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 137
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=113.53 Aligned_cols=74 Identities=24% Similarity=0.300 Sum_probs=67.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCC-----eEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS-----RYIE 179 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~g-----r~i~ 179 (196)
...+|||+|||+++|+++|+++|++||.+. .|.++.+ |||||+|.+.++|++|+.. |+..|.| +.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVC-YADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEE-EEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 467999999999999999999999999776 7888765 8999999999999999985 9999999 9999
Q ss_pred EEECChH
Q 029263 180 LFPSSHE 186 (196)
Q Consensus 180 V~~~~~~ 186 (196)
|.++.+.
T Consensus 87 V~~a~~~ 93 (108)
T 1x4c_A 87 VKVDGPR 93 (108)
T ss_dssp EEESSCC
T ss_pred EEeCCCC
Confidence 9999764
No 138
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=1.7e-17 Score=122.94 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=74.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
..+.+|||+|||+.+|+++|+++|+.||.+. .|.|+.+.+|.++|||||+|.+.++|.+|+.. |+..|+|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLK-KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCS-EEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4467999999999999999999999999776 79999888999999999999999999999985 999999999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 654
No 139
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=1.4e-17 Score=114.78 Aligned_cols=78 Identities=21% Similarity=0.403 Sum_probs=70.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~~ 184 (196)
.+.+|||+|||+.+|+++|+++|+.||.+. .|.++.+ +.++|||||+|.+.++|.+|+. +||..++|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIR-QIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 457999999999999999999999999776 7888764 5669999999999999999998 59999999999999998
Q ss_pred hH
Q 029263 185 HE 186 (196)
Q Consensus 185 ~~ 186 (196)
+.
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 140
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.1e-18 Score=115.86 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=68.5
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccc---eEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSED---SIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 180 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~---~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V 180 (196)
..+.+|||+|||+++|+++|+++|+.||.+.. .+.+. +|.++|||||+|.+.++|.+|+.. |+..|+|+.|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 35679999999999999999999999996531 23333 889999999999999999999975 999999999999
Q ss_pred EECChH
Q 029263 181 FPSSHE 186 (196)
Q Consensus 181 ~~~~~~ 186 (196)
.++.+.
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 999754
No 141
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.3e-18 Score=113.98 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=65.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hC--CCccCCeEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KD--RMTLGSRYIELF 181 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~--g~~l~gr~i~V~ 181 (196)
..+.+|||+|||+.+|+++|+++|++||.+. .|.++. .+|||||+|.+.++|.+|+. +| +..|+|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~-~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTIC-YVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEE-EEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3467999999999999999999999999776 677764 37899999999999999996 34 456999999999
Q ss_pred ECChH
Q 029263 182 PSSHE 186 (196)
Q Consensus 182 ~~~~~ 186 (196)
++...
T Consensus 87 ~a~~~ 91 (104)
T 1wex_A 87 YSTSK 91 (104)
T ss_dssp ECSSS
T ss_pred EccCc
Confidence 99754
No 142
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=109.69 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=66.4
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+++|+++|+++|++||.+. .|.++ +|||||+|.+.++|.+|+. +|+..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVL-ECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEE-EEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 3567999999999999999999999999776 67776 5799999999999999996 5999999999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 143
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=111.42 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=67.9
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|+.||.+. .|.+.. ++|||||+|.+.++|.+|+.. |+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAG-EVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCS-EEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeE-EEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 3567999999999999999999999999776 788774 378999999999999999965 999999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 144
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=110.16 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=67.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccC--CeEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLG--SRYIELF 181 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~--gr~i~V~ 181 (196)
....+|||+|||+++|+++|+++|++||.+. .|.+..+ +|||||+|.+.++|++|+.. |+..+. |+.|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIR-TIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEE-EEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 3457899999999999999999999999776 6777643 78999999999999999974 999999 9999999
Q ss_pred ECChH
Q 029263 182 PSSHE 186 (196)
Q Consensus 182 ~~~~~ 186 (196)
++.+.
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98753
No 145
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=1.5e-17 Score=126.45 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=74.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+++|+++|+++|++||.+. +|+|+++. +|+++|||||+|.+.++|.+|+.. |+..+.|+.|+|..+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPIL-SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEE-EEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 457899999999999999999999999876 89999886 899999999999999999999976 999999999999998
Q ss_pred ChHHH
Q 029263 184 SHEEM 188 (196)
Q Consensus 184 ~~~~~ 188 (196)
.....
T Consensus 93 ~~~~~ 97 (213)
T 4f02_A 93 QRDPS 97 (213)
T ss_dssp CCCTH
T ss_pred ccccc
Confidence 65433
No 146
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=107.42 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=66.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-h-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-K-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~-~g~~l~gr~i~V~~ 182 (196)
....+|||+|||+.+|+++|+++|++||.+. .|.++. ++|+|||+|.+.++|.+|+. + |+..++|++|+|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~-~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIR-TITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEE-EEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEe-EEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 3457899999999999999999999999776 788875 47899999999999999997 6 99999999999998
Q ss_pred CC
Q 029263 183 SS 184 (196)
Q Consensus 183 ~~ 184 (196)
+.
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 147
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=8.6e-18 Score=112.07 Aligned_cols=76 Identities=21% Similarity=0.459 Sum_probs=67.7
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|+.||.+. ++ ..+|.++|||||+|.+.++|.+|+. +||..|+|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~----~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIR----LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC----CE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE----Ee-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3568999999999999999999999998543 22 5678999999999999999999998 5999999999999998
Q ss_pred Ch
Q 029263 184 SH 185 (196)
Q Consensus 184 ~~ 185 (196)
.+
T Consensus 89 ~~ 90 (96)
T 1fjc_A 89 GE 90 (96)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 148
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=2.1e-18 Score=115.24 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=69.9
Q ss_pred cccEEEEcCCCCCCCHHHHH----HHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIM----DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 180 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~----~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V 180 (196)
.+.+|||+|||+++|+++|+ ++|++||.+. .|.+. .+|.++|||||+|.+.++|.+|+.. ||..++|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~-~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQIL-DILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEE-EEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEE-EEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 46799999999999999999 9999999765 56665 3678899999999999999999975 999999999999
Q ss_pred EECChH
Q 029263 181 FPSSHE 186 (196)
Q Consensus 181 ~~~~~~ 186 (196)
.++.+.
T Consensus 84 ~~a~~~ 89 (97)
T 1nu4_A 84 QYAKTD 89 (97)
T ss_dssp EECSSC
T ss_pred EEccCC
Confidence 999765
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=2.4e-17 Score=123.16 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=74.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+..++..++|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 4568999999999999999999999999776 78888886 799999999999999999999998999999999999998
Q ss_pred ChHH
Q 029263 184 SHEE 187 (196)
Q Consensus 184 ~~~~ 187 (196)
....
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 7654
No 150
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.2e-17 Score=114.29 Aligned_cols=80 Identities=11% Similarity=0.127 Sum_probs=69.4
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCC----HHH----HHHHHH--h-CCC
Q 029263 108 GILRLRGL----PFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFAN----AED----SKAAMA--K-DRM 171 (196)
Q Consensus 108 ~~l~v~nL----p~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~----~~~----A~~Al~--~-~g~ 171 (196)
..|||+|| |+.+++++|+++|+.||.+. ++.++.|+ ||.++|||||+|.+ +++ |.+|+. . ||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~-~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEIS-HFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCS-EEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 46999999 99999999999999999776 89999998 99999999999996 444 788876 4 999
Q ss_pred ccCCeEEEEEECChHHH
Q 029263 172 TLGSRYIELFPSSHEEM 188 (196)
Q Consensus 172 ~l~gr~i~V~~~~~~~~ 188 (196)
.|+||.|+|.+...-..
T Consensus 82 ~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSIL 98 (136)
T ss_dssp EETTEEEEEEECCTTHH
T ss_pred eecCcEEEEEECcccHH
Confidence 99999999999865443
No 151
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.7e-17 Score=111.73 Aligned_cols=74 Identities=12% Similarity=0.247 Sum_probs=67.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
...+|||+|||+++|+++|+++|+.||.+. .|.+. .++|||||+|.+.++|.+|+.. ||..++|+.|+|.++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFIL-DFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCS-EEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEE-EEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 457999999999999999999999999776 78777 4689999999999999999965 9999999999999886
Q ss_pred h
Q 029263 185 H 185 (196)
Q Consensus 185 ~ 185 (196)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 152
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=2.8e-17 Score=112.15 Aligned_cols=74 Identities=23% Similarity=0.380 Sum_probs=67.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+++|+++|+++|++||.+. .|.++ +|||||+|.+.++|.+|+.. ||..++|+.|.|.++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMK-EVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCC-EEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4567999999999999999999999999776 67777 68999999999999999975 999999999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 101 ~~~ 103 (108)
T 2jvo_A 101 KLP 103 (108)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 153
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=3e-17 Score=123.23 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=72.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECCh
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~~ 185 (196)
..++|||+|||+++|+++|+++|++||.+. .|+++++.+|.++|||||+|.+.++|.+|+...+..++|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVL-NIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEE-EEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEE-EEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 357999999999999999999999999876 8999999999999999999999999999998866799999999998754
No 154
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=112.98 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=66.0
Q ss_pred CCcccEEEEcCCCCC-CCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-h--CCCccCCeEEE
Q 029263 104 AVHTGILRLRGLPFS-AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-K--DRMTLGSRYIE 179 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~-~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~--~g~~l~gr~i~ 179 (196)
...+.+|||+|||++ +|+++|+++|++||.+. .|.|+ +++|||||+|.+.++|..|+. + ++..|.||.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~-~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIK-NYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCS-EEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEE-EEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345689999999998 99999999999999776 68776 357899999999999999996 3 45679999999
Q ss_pred EEECCh
Q 029263 180 LFPSSH 185 (196)
Q Consensus 180 V~~~~~ 185 (196)
|.++.+
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 999864
No 155
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=4.7e-17 Score=108.90 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=65.7
Q ss_pred CcccEEEEcCCCC-CCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPF-SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~-~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
..+.+|||+|||+ .+|+++|+++|+.||.+. .|.+ ++|||||+|.+.++|.+|+. +||..++|+.|.|.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~-~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM-QINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEE-EEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3567999999999 999999999999999776 6766 37899999999999999997 499999999999999
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
+..
T Consensus 92 a~~ 94 (97)
T 2xnq_A 92 SSS 94 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 156
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=109.40 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=65.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCC-CccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDR-MTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g-~~l~gr~i~V~~~ 183 (196)
...+|||+|||+++|+++|+++|++||.+...+.+. ++|||||+|.+.++|.+|+. +|+ ..|+|+.|+|.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 457899999999999999999999999733255553 57899999999999999997 499 9999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 754
No 157
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=112.31 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=67.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
...+|||+|||+.+|+++|+++|+.||.+. .|.++.+ +|||||+|.+.++|.+|+.. ||..|+|+.|+|.++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIM-EIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEE-EEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 457999999999999999999999999776 7888765 78999999999999999965 9999999999999987
Q ss_pred hH
Q 029263 185 HE 186 (196)
Q Consensus 185 ~~ 186 (196)
+.
T Consensus 98 ~~ 99 (109)
T 1x4g_A 98 ES 99 (109)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 158
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=112.00 Aligned_cols=73 Identities=25% Similarity=0.331 Sum_probs=67.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECChH
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 186 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 186 (196)
+|||+|||+++|+++|+++|++||.+. .|.++.+ ++|||||+|.+.++|.+|+.. |+..++|+.|+|.++.+.
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLR-TVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCS-EEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 799999999999999999999999776 7888876 789999999999999999975 999999999999999764
No 159
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=4.9e-17 Score=118.20 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=72.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEECC
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPSS 184 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~~ 184 (196)
..+|||+|||+++|+++|+++|+.||.+. .+.++.+. +|.++|+|||+|.+.++|.+|+. +||..++|++|.|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIE-SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 46899999999999999999999999776 78998887 99999999999999999999997 59999999999999986
Q ss_pred h
Q 029263 185 H 185 (196)
Q Consensus 185 ~ 185 (196)
+
T Consensus 81 ~ 81 (167)
T 1fxl_A 81 P 81 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 160
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8e-17 Score=106.55 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=66.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|++||.+. .|.++ ++||||+|.+.++|.+|+.. |+..++|+.|+|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVI-ECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCC-EEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3567999999999999999999999999776 67776 34999999999999999965 999999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 161
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.5e-17 Score=107.62 Aligned_cols=75 Identities=27% Similarity=0.286 Sum_probs=65.3
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHhhcC--CCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEE
Q 029263 104 AVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIEL 180 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V 180 (196)
.....+|||+|||+.+|+++|+++|+.| |.+. .|.+. +|||||+|.+.++|.+|+. +|+..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~-~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVE-RVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEE-EEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceE-EEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 6554 45543 6799999999999999998 5999999999999
Q ss_pred EECChH
Q 029263 181 FPSSHE 186 (196)
Q Consensus 181 ~~~~~~ 186 (196)
.++.+.
T Consensus 84 ~~a~~~ 89 (99)
T 2cpd_A 84 TLAKPV 89 (99)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 999754
No 162
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=118.03 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=68.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceE------EEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI------HITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYI 178 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v------~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i 178 (196)
.+.+|||+|||+.+|+++|+++|+.||.+. .+ .+....+|.++|||||+|.+.++|.+|+. +||..|+|+.|
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFS-SETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTT-CHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcc-cccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 457899999999999999999999999665 32 22233579999999999999999999997 59999999999
Q ss_pred EEEECCh
Q 029263 179 ELFPSSH 185 (196)
Q Consensus 179 ~V~~~~~ 185 (196)
.|.++..
T Consensus 123 ~V~~a~~ 129 (143)
T 3egn_A 123 VVQFARS 129 (143)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999954
No 163
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=6.9e-19 Score=121.59 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=73.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccce--------EEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--------IHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGS 175 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~--------v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~g 175 (196)
...+|||+|||+++|+++|+++|+.||.+. . |.++.+. +|.++|||||+|.+.++|.+|+. +|+..++|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIK-TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 457899999999999999999999999776 5 7788774 79999999999999999999997 49999999
Q ss_pred eEEEEEECChHH
Q 029263 176 RYIELFPSSHEE 187 (196)
Q Consensus 176 r~i~V~~~~~~~ 187 (196)
+.|.|.++.+..
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999997764
No 164
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.71 E-value=4.3e-17 Score=110.15 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=66.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+++|+++|+++|++||.+. .|.++ +|||||+|.+.++|.+|+.. |+..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLE-RVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEE-EEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3567899999999999999999999999776 67765 45999999999999999974 999999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 165
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=4.4e-17 Score=107.00 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=65.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
...+|||+|||+.+|+++|+++|++| .+. .+.+. .++|||||+|.+.++|.+|+.. ||..++|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~-~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLK-YCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCC-CEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeE-EEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 35689999999999999999999999 444 57774 6889999999999999999974 9999999999999986
Q ss_pred h
Q 029263 185 H 185 (196)
Q Consensus 185 ~ 185 (196)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.6e-17 Score=118.20 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=70.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEECCh
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~~~ 185 (196)
++|||+|||+++|+++|+++|++||.+. +|.++.+++|.++|+|||+|.+.++|.+|+. +||..++|+.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIA-NIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEE-EEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeE-EEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 4799999999999999999999999776 8999999999999999999999999999995 599999999999998853
No 167
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=5.2e-17 Score=107.00 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=61.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
....+|||+|||+++|+++|+++|++||.+. .|.++.+ ++|||||+|.+.++|.++ ......++|+.|.|..+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~-~v~i~~~----srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVV-DVFIPKP----FRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEECCSS----CCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEE-EEEEeeC----CCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEcC
Confidence 3567999999999999999999999999776 7888764 789999999999999843 222344579999999998
Q ss_pred hHH
Q 029263 185 HEE 187 (196)
Q Consensus 185 ~~~ 187 (196)
+..
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 764
No 168
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.6e-17 Score=112.83 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=66.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
...+|||+|||+.+|+++|+++|++||.+. .|.++. ++|||||+|.+.++|.+|+.. ||..|+|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLG-RVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457899999999999999999999999775 676652 678999999999999999975 9999999999999985
Q ss_pred h
Q 029263 185 H 185 (196)
Q Consensus 185 ~ 185 (196)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 169
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.2e-17 Score=106.33 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=66.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+.+|+++|+++|++||.+. .|.++ +|||||+|.+.++|.+|+.. |+..++|+.|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVI-ECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEE-EEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEE-EEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3467899999999999999999999999776 67776 34999999999999999975 999999999999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 170
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-17 Score=107.48 Aligned_cols=76 Identities=17% Similarity=0.339 Sum_probs=65.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECCh
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~~ 185 (196)
...+|||+|||+++|+++|+++|+.||.+. .| +....+|. ||||+|.+.++|.+|+.+|+..|+|+.|.|.++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~-~v-~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVA-SV-VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEE-EE-EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EE-EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 456899999999999999999999999776 45 33333554 99999999999999999999999999999998864
Q ss_pred H
Q 029263 186 E 186 (196)
Q Consensus 186 ~ 186 (196)
.
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 4
No 171
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=1e-16 Score=109.55 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=65.4
Q ss_pred cccEEEEcCCCCC-CCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFS-AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~-~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+. +|+++|+++|++||.+. .|.+ ++|||||+|.+.++|.+|+. +|+..|+|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~-~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVA-GCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCS-EEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeE-EEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 99999999999999776 6776 57899999999999999995 4999999999999999
Q ss_pred Ch
Q 029263 184 SH 185 (196)
Q Consensus 184 ~~ 185 (196)
.+
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 172
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=2.2e-16 Score=107.14 Aligned_cols=84 Identities=13% Similarity=0.106 Sum_probs=72.7
Q ss_pred cccEEEEcCCCC-----CCCHHHHHHHhhcCCCccceEEEEeCC--CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeE
Q 029263 106 HTGILRLRGLPF-----SAGKDDIMDFFKDFVLSEDSIHITMNS--DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRY 177 (196)
Q Consensus 106 ~~~~l~v~nLp~-----~~t~~~l~~~F~~~g~~~~~v~l~~~~--~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~ 177 (196)
.+.+|+|+||.. +.++++|+++|++||.+. +|.++.++ ++.++|+|||+|.+.++|.+|+.. ||..++||.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~-~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVG-KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEE-EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEE-EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 467999999963 347899999999999876 78898875 368999999999999999999965 999999999
Q ss_pred EEEEECChHHHHH
Q 029263 178 IELFPSSHEEMDE 190 (196)
Q Consensus 178 i~V~~~~~~~~~~ 190 (196)
|.|.++.+..+..
T Consensus 86 i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 86 VKACFYNLDKFRV 98 (105)
T ss_dssp CEEEECCHHHHHT
T ss_pred EEEEEcCHHHhhh
Confidence 9999999877653
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=7.1e-17 Score=105.52 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=61.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcC----C-------CccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCcc
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDF----V-------LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 173 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~----g-------~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l 173 (196)
....+|||+|||+++|+++|+++|++| | .+. ++.+.. ++|||||+|.+.++|.+|+.+|+..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~-~~~~~~-----~kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL-AVQINQ-----DKNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE-EEEECS-----SSSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcce-EEEecC-----CCcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 356899999999999999999999999 7 443 566553 37999999999999999995599999
Q ss_pred CCeEEEEE
Q 029263 174 GSRYIELF 181 (196)
Q Consensus 174 ~gr~i~V~ 181 (196)
+|+.|+|.
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999986
No 174
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=6.2e-17 Score=117.95 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=71.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEECC
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPSS 184 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~~ 184 (196)
+.+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|+|||+|.+.++|.+|+. +|+..++|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPIN-TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999776 78888775 89999999999999999999997 59999999999999986
Q ss_pred h
Q 029263 185 H 185 (196)
Q Consensus 185 ~ 185 (196)
+
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 175
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.9e-17 Score=108.52 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=65.3
Q ss_pred CcccEEEEcCCCC-CCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPF-SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~-~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~ 182 (196)
..+.+|||+|||+ .+|+++|+++|++||.+. .|.+. +|||||+|.+.++|.+|+.. |+..+.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~-~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM-QINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCC-EEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3567999999999 999999999999999776 67774 68999999999999999975 99999999999999
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
+.+
T Consensus 80 a~~ 82 (96)
T 2kvi_A 80 SSS 82 (96)
T ss_dssp EEC
T ss_pred cCc
Confidence 854
No 176
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=7.1e-17 Score=107.57 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=67.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceE-EEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI-HITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v-~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+.+|+++|+++|+.||.+. .+ .++.+. ..|.|||+|.+.++|.+|+. +||..|+|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVE-SCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEE-EEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeE-EEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999776 67 466654 23459999999999999997 5999999999999999
Q ss_pred ChHH
Q 029263 184 SHEE 187 (196)
Q Consensus 184 ~~~~ 187 (196)
.+++
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8763
No 177
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=108.09 Aligned_cols=72 Identities=24% Similarity=0.227 Sum_probs=65.2
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~ 75 (196)
..|++||+++|++| .|.+|.+ .+.+|+++|||||+|.++++|++||++|+..|++|.|.|..+...+|....
T Consensus 27 ~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~~~~~~ 99 (109)
T 2dnn_A 27 SAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAG 99 (109)
T ss_dssp SCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHHHHHHHH
T ss_pred CCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCccchhhcC
Confidence 47899999999998 8999854 577899999999999999999999999999999999999999988886654
No 178
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.3e-16 Score=104.04 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=65.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
....+|||+|| ++|+++|+++|++||.+. .|.+. .++|||||+|.+.++|.+|+.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~-~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII-DLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEE-EEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEE-EEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34579999996 999999999999999775 67763 6789999999999999999965 999999999999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 85 ~~~ 87 (97)
T 1x5p_A 85 RKQ 87 (97)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 179
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=110.34 Aligned_cols=76 Identities=22% Similarity=0.378 Sum_probs=67.4
Q ss_pred CchHHHHHHHhcccCcc----eeEE-EecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhh
Q 029263 3 LPQVQVLCTIHHQLMDI----VDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i----~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~ 77 (196)
..|++||+++|++||.| .+|. +.+.+|+++|||||+|.+.++|++||++|+..|++|.|.|..+.+.++...+..
T Consensus 34 ~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~~e~~~~~~~ 113 (123)
T 2dha_A 34 TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 113 (123)
T ss_dssp TCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECCHHHHHHHHHh
Confidence 46899999999999875 5674 567899999999999999999999998899999999999999999988877765
Q ss_pred c
Q 029263 78 E 78 (196)
Q Consensus 78 ~ 78 (196)
.
T Consensus 114 ~ 114 (123)
T 2dha_A 114 F 114 (123)
T ss_dssp H
T ss_pred c
Confidence 4
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=1.9e-16 Score=115.32 Aligned_cols=81 Identities=15% Similarity=0.341 Sum_probs=72.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
++.+|||+|||+++|+++|+++|++||.+. +|.++.+. +|.++|||||+|.+.++|.+|+.. +..++|+.|.|..+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVT-DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEE-EEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEccccccc
Confidence 357899999999999999999999999776 78888885 899999999999999999999984 678999999999987
Q ss_pred hHHH
Q 029263 185 HEEM 188 (196)
Q Consensus 185 ~~~~ 188 (196)
+...
T Consensus 80 ~~~~ 83 (167)
T 2cjk_A 80 PRDE 83 (167)
T ss_dssp CHHH
T ss_pred chhh
Confidence 6543
No 181
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=3.1e-17 Score=113.17 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=63.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeE-----EE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRY-----IE 179 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~-----i~ 179 (196)
...+|||.|||+++|+++|+++|++||.+. .|.|+.+ |||||+|.+.++|++|+. +|+..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVC-YADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEE-EEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 457899999999999999999999999765 6777755 899999999999999997 5999999988 88
Q ss_pred EEECChH
Q 029263 180 LFPSSHE 186 (196)
Q Consensus 180 V~~~~~~ 186 (196)
|..+.+.
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 8887764
No 182
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=108.19 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=53.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-C---CCCceEEEEEeCCHHHHHHHHHh
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D---GRPTGEAFVEFANAEDSKAAMAK 168 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~---g~~~G~afV~F~~~~~A~~Al~~ 168 (196)
...+|||+|||+++|+++|+++|++||.+. +.++.+. + |+++|||||+|.+.++|++|+..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC--EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE--EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh
Confidence 457899999999999999999999999876 6666555 3 79999999999999999999964
No 183
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-16 Score=104.50 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=63.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECCh
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 185 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~~ 185 (196)
.+.+|||+|||+++|+++|+++|++||.+. .|.++.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVM-DVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCC-EEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCee-EEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 457999999999999999999999999776 7887754 789999999999999865332 4566999999999876
Q ss_pred H
Q 029263 186 E 186 (196)
Q Consensus 186 ~ 186 (196)
.
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 184
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=8.1e-16 Score=111.63 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=66.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCC--eEEEEEEC
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS--RYIELFPS 183 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~g--r~i~V~~~ 183 (196)
..+|||+|||+.+|+++|+++|++||.+. .|.+..+ .++|||||+|.+.++|+.|+.. ||..|.| +.|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~-~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVL-KIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEE-EEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEE-EEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 46799999999999999999999999876 6777643 3679999999999999999975 9999955 99999999
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 765
No 185
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=1.1e-15 Score=105.83 Aligned_cols=75 Identities=27% Similarity=0.420 Sum_probs=66.6
Q ss_pred CchHHHHHHHhcccCc---ceeEE-EecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhh
Q 029263 3 LPQVQVLCTIHHQLMD---IVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~---i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~ 77 (196)
..|++||+++|+.||. |.+|. +.+.+|+++|||||+|.+.++|++||++++..++++.|.|..+.+.++...+..
T Consensus 28 ~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~~~~~~~~ 106 (118)
T 2db1_A 28 SCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH 106 (118)
T ss_dssp TCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHHHHHHHHHH
Confidence 4689999999999998 78884 567789999999999999999999999999999999999999998887665543
No 186
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-16 Score=108.18 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=65.2
Q ss_pred CcccEEEE--cCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCcc-----CCe
Q 029263 105 VHTGILRL--RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL-----GSR 176 (196)
Q Consensus 105 ~~~~~l~v--~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l-----~gr 176 (196)
.++.+||| +|||+.+|+++|+++|++||.+. .|.++. .+|||||+|.+.++|++|+.. ||..+ +|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~-~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEE-EEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeE-EEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34678999 77999999999999999999775 666652 378999999999999999975 99988 799
Q ss_pred EEEEEECChH
Q 029263 177 YIELFPSSHE 186 (196)
Q Consensus 177 ~i~V~~~~~~ 186 (196)
+|.|.++...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999988643
No 187
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=1e-15 Score=107.20 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=66.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceE-EEEEeCCHHHHHHHHHh-CCCccCC--eEEEEEE
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE-AFVEFANAEDSKAAMAK-DRMTLGS--RYIELFP 182 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~-afV~F~~~~~A~~Al~~-~g~~l~g--r~i~V~~ 182 (196)
-..|||+|||+.+|+++|+++|++||.+. .|.+..+ ++|+ |||+|.+.++|..|+.. ||..|.| +.|+|.+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~-~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVL-KIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEE-EEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEE-EEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 45788999999999999999999999876 7777653 3577 99999999999999975 9999988 9999999
Q ss_pred CChH
Q 029263 183 SSHE 186 (196)
Q Consensus 183 ~~~~ 186 (196)
+.+.
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 9764
No 188
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=4.8e-16 Score=117.71 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=70.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-CCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
...+|||+|||+++|+++|+++|+.||.+. .|.++.+. +|.++|||||+|.+.++|.+|+. +|+..++|+.|.|..+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIK-SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEE-EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 357899999999999999999999999776 78888876 89999999999999999999998 5999999999999887
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 189
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=4.8e-15 Score=103.20 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=63.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceE-EEEEeCCHHHHHHHHHh-CCCccCC--eEEEEEEC
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE-AFVEFANAEDSKAAMAK-DRMTLGS--RYIELFPS 183 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~-afV~F~~~~~A~~Al~~-~g~~l~g--r~i~V~~~ 183 (196)
..|||+|||+.+|+++|+++|++||.+. .|.+... .|| |||+|.+.++|..|+.. ||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~-~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQ-RIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEE-EEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEE-EEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4578999999999999999999999876 6777642 286 99999999999999975 9999977 79999998
Q ss_pred ChH
Q 029263 184 SHE 186 (196)
Q Consensus 184 ~~~ 186 (196)
.+.
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 654
No 190
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=101.20 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=59.2
Q ss_pred ccE-EEEcCCCCCCCHHH----HHHHhhcCC-CccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEE
Q 029263 107 TGI-LRLRGLPFSAGKDD----IMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIE 179 (196)
Q Consensus 107 ~~~-l~v~nLp~~~t~~~----l~~~F~~~g-~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~ 179 (196)
..+ |||+|||+.+++++ |+++|++|| .+. .| +| |+|||.|.+.++|.+|+. +||..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl-~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVL-SI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEE-EC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeE-EE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 445 99999999999988 558999995 553 34 34 999999999999999996 599999999999
Q ss_pred EEECCh
Q 029263 180 LFPSSH 185 (196)
Q Consensus 180 V~~~~~ 185 (196)
|.++..
T Consensus 78 v~~A~~ 83 (96)
T 2diu_A 78 VSFTPK 83 (96)
T ss_dssp EESSCC
T ss_pred EEecCC
Confidence 999864
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=1.3e-16 Score=117.20 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=70.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEECC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 184 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V~~~~ 184 (196)
....+|||+|||+++|+++|+++|+.||.+. .+.+....+|.++|||||+|.+.++|.+|+.+||..++|+.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~-~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKN-DLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHH-TCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcc-eEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 4568999999999999999999999998665 344444457899999999999999999999889999999999999986
Q ss_pred h
Q 029263 185 H 185 (196)
Q Consensus 185 ~ 185 (196)
+
T Consensus 90 ~ 90 (175)
T 1fje_B 90 G 90 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=8.6e-16 Score=116.28 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=67.3
Q ss_pred cccEEEEcCCC-CCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 106 HTGILRLRGLP-FSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 106 ~~~~l~v~nLp-~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
.+.+|||+||| +.+|+++|+++|+.||.+. +|+++.+ ++|||||+|.+.++|.+|+. +||..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~-~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVE-KVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEE-EEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeE-EEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 35689999999 8999999999999999876 7888754 47899999999999999997 5999999999999998
Q ss_pred Ch
Q 029263 184 SH 185 (196)
Q Consensus 184 ~~ 185 (196)
..
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 193
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=1.2e-15 Score=108.09 Aligned_cols=73 Identities=30% Similarity=0.443 Sum_probs=65.6
Q ss_pred CchHHHHHHHhcccCc---ceeEE-EecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMD---IVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 75 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~---i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~ 75 (196)
..|++||+++|+.||. |.+|. +.|.+|+++|||||+|.+.++|++||++|+..+++|.|.|..+.+.++.+.+
T Consensus 55 ~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~e~~~~~ 131 (136)
T 2hgl_A 55 SCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL 131 (136)
T ss_dssp TCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChHHHHHHH
Confidence 4699999999999998 77874 5677899999999999999999999999999999999999999988876554
No 194
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.3e-15 Score=111.50 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=68.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCC---CCceEEEEEeCCHHHHHHHHHh-CCCccC---CeEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG---RPTGEAFVEFANAEDSKAAMAK-DRMTLG---SRYI 178 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g---~~~G~afV~F~~~~~A~~Al~~-~g~~l~---gr~i 178 (196)
...+|||+|||+++|+++|+++|++||.+. +|.++.+..+ .++|||||+|.+.++|.+|+.. |+..+. ++.|
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVY-EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 357899999999999999999999999876 7999888754 8999999999999999999975 887765 6888
Q ss_pred EEEECCh
Q 029263 179 ELFPSSH 185 (196)
Q Consensus 179 ~V~~~~~ 185 (196)
.+.++..
T Consensus 81 ~~~~~~~ 87 (175)
T 3nmr_A 81 QMKPADS 87 (175)
T ss_dssp EEEECGG
T ss_pred EEccccc
Confidence 8877653
No 195
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.7e-15 Score=103.13 Aligned_cols=74 Identities=11% Similarity=-0.021 Sum_probs=65.0
Q ss_pred CchHHHHHHHhcccCcc-eeEE-EecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHh
Q 029263 3 LPQVQVLCTIHHQLMDI-VDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 76 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i-~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~ 76 (196)
..|+++|+++|+.||.| .+|. +.+.+|+++|||||+|.+.++|.+||++++..++++.|.|..+.+.+......
T Consensus 26 ~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~~~~~~~ 101 (114)
T 2cpy_A 26 SITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMREIEK 101 (114)
T ss_dssp TSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHHHHHHHH
T ss_pred cCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHHHHHHHh
Confidence 46899999999999988 6774 45779999999999999999999999889999999999999998877655443
No 196
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=2.7e-15 Score=118.34 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=70.1
Q ss_pred CcccEEEEcCCCCCCCHHHHH----HHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEE
Q 029263 105 VHTGILRLRGLPFSAGKDDIM----DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIE 179 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~----~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~ 179 (196)
....+|||+|||+++|+++|+ ++|+.||.+. .|.+.. +|.++|||||+|.+.++|.+|+. +||..|.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~-~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQIL-DILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeE-EEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 356899999999999999976 8999999776 677664 78899999999999999999995 599999999999
Q ss_pred EEECChH
Q 029263 180 LFPSSHE 186 (196)
Q Consensus 180 V~~~~~~ 186 (196)
|.++...
T Consensus 84 v~~a~~~ 90 (282)
T 3pgw_A 84 IQYAKTD 90 (282)
T ss_pred EEEeccC
Confidence 9998654
No 197
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=101.03 Aligned_cols=65 Identities=11% Similarity=0.082 Sum_probs=58.4
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.|+ +|+++|||||+|.+.++|.+|| .+|+..++|+.|.|..+.
T Consensus 30 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 30 NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 469999999999999999985 4554 8999999999999999999999 589999999999997654
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=2.6e-15 Score=101.80 Aligned_cols=83 Identities=24% Similarity=0.266 Sum_probs=70.9
Q ss_pred cccEEEEcCC--CCCC--------CHHHHHHHhhcCCCccceEEEEeCCC---CCCceEEEEEeCCHHHHHHHHHh-CCC
Q 029263 106 HTGILRLRGL--PFSA--------GKDDIMDFFKDFVLSEDSIHITMNSD---GRPTGEAFVEFANAEDSKAAMAK-DRM 171 (196)
Q Consensus 106 ~~~~l~v~nL--p~~~--------t~~~l~~~F~~~g~~~~~v~l~~~~~---g~~~G~afV~F~~~~~A~~Al~~-~g~ 171 (196)
++++|.|+|| |... .++||++.|++||.+. +|.++++.. +.++|+|||+|.++++|.+|+.. ||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~-~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVK-SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEE-EEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEE-EEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4679999998 3333 3479999999999877 888887764 36899999999999999999965 999
Q ss_pred ccCCeEEEEEECChHHHH
Q 029263 172 TLGSRYIELFPSSHEEMD 189 (196)
Q Consensus 172 ~l~gr~i~V~~~~~~~~~ 189 (196)
.++||.|+|.++....+.
T Consensus 83 ~f~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDSYH 100 (105)
T ss_dssp EETTEECEEEEECHHHHH
T ss_pred EeCCCEEEEEEeCHHHHh
Confidence 999999999999888765
No 199
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=3.8e-15 Score=103.55 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=66.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~ 183 (196)
..+.+|||+|| ++|+++|+++|+.||.+. .|.+. .++|||||+|.+.++|.+|+.. ||..|+|+.|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~-~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII-DLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCS-CEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEE-EEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 34679999996 699999999999999776 67775 5789999999999999999965 999999999999999
Q ss_pred ChHHH
Q 029263 184 SHEEM 188 (196)
Q Consensus 184 ~~~~~ 188 (196)
.+...
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76543
No 200
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.6e-16 Score=103.96 Aligned_cols=68 Identities=25% Similarity=0.381 Sum_probs=60.8
Q ss_pred CchHHHHHHHhcccCccee-EE-EecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHH
Q 029263 3 LPQVQVLCTIHHQLMDIVD-VL-FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~-v~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~ 70 (196)
..|++||+++|+.||.|.+ |. +.+.+|+++|||||+|.++++|++||+.++..++++.|.|..+.+.+
T Consensus 26 ~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 26 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTT
T ss_pred CCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHH
Confidence 4689999999999999987 64 45789999999999999999999999889999999999998887544
No 201
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=103.09 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=58.1
Q ss_pred CchHHHHHHHhcccCcceeE-EEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v-~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|++||+++|++|| +++| ++.+++|+++|||||+|.+.++|++||++|+..|+++.|.|..+.
T Consensus 26 ~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 26 RATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp TCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 468999999999988 6687 456789999999999999999999999999999999999998876
No 202
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=102.93 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=66.3
Q ss_pred CchHHHHHHHhcccCc---ceeEE-EecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhh
Q 029263 3 LPQVQVLCTIHHQLMD---IVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN 77 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~---i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~ 77 (196)
..|++||+++|+.||. |.+|. +.+..|+++|||||+|.+.++|++||++++..++++.|.|..+.+.++...+..
T Consensus 22 ~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~~~~~~~~ 100 (107)
T 2lmi_A 22 SCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKS 100 (107)
T ss_dssp SCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHHHHHHHHHh
Confidence 4689999999999888 78885 457779999999999999999999999999999999999999998887666543
No 203
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.58 E-value=5.1e-16 Score=116.06 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=64.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceE-----EEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI-----HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v-----~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V 180 (196)
..++|||+|||+++|+++|+++|+.||.+...+ .+.....+.++|||||+|.+.++|.+|+.+||..|+|+.|.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 82 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEE
Confidence 357899999999999999999999994222100 122223467789999999999999999977999999999999
Q ss_pred EECCh
Q 029263 181 FPSSH 185 (196)
Q Consensus 181 ~~~~~ 185 (196)
.++..
T Consensus 83 ~~~~~ 87 (198)
T 2yh0_A 83 RRPHD 87 (198)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 98754
No 204
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.58 E-value=8.5e-15 Score=100.07 Aligned_cols=68 Identities=9% Similarity=0.053 Sum_probs=60.2
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQE 70 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~ 70 (196)
..|+++|+++|++||.|.+|. +.|. +|+++|||||+|.+.++|++|| .+|+..+.|+.|.|..+....
T Consensus 17 ~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 17 NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 469999999999999999984 4565 7999999999999999999999 589999999999998766443
No 205
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.4e-15 Score=104.94 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=66.7
Q ss_pred CchHHHHHHHhcccCccee-EEE-ecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHHHHHHhhc
Q 029263 3 LPQVQVLCTIHHQLMDIVD-VLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE 78 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~-v~~-~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~~~~~~~~ 78 (196)
..|+++|+++|+.||.|.+ +++ .+.+|+++|||||+|.+.++|.+||++|+..|+++.|.|..+.+.++...+...
T Consensus 36 ~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~~~~~~~~~ 113 (124)
T 1wel_A 36 EAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMI 113 (124)
T ss_dssp TCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHHHHHHHHHHH
Confidence 4689999999999999987 344 457999999999999999999999999999999999999999988876655443
No 206
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-14 Score=98.12 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=65.0
Q ss_pred CcccEEEEcCCCCCCC-----------HHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCc
Q 029263 105 VHTGILRLRGLPFSAG-----------KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMT 172 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t-----------~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~ 172 (196)
..+.+|+|+||....+ +++|+++|++||.+. .|.| .+. .++|||||+|.+.++|.+|+.. ||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~-~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIR-KLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCS-EEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEe-EEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3568999999944432 689999999999776 6755 443 4899999999999999999965 9999
Q ss_pred cCCeEEEEEECChH
Q 029263 173 LGSRYIELFPSSHE 186 (196)
Q Consensus 173 l~gr~i~V~~~~~~ 186 (196)
++||.|.|.++.+.
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998763
No 207
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.57 E-value=1.3e-15 Score=106.39 Aligned_cols=68 Identities=29% Similarity=0.462 Sum_probs=60.8
Q ss_pred CchHHHHHHHhcccCcce--eEE-EecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHHH
Q 029263 3 LPQVQVLCTIHHQLMDIV--DVL-FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY 71 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~--~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~~ 71 (196)
..|++||+++|++| +|+ +|. +.|++|+++|||||+|.++++|++||++++..|++|+|.|.++.+.++
T Consensus 53 ~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~e~ 123 (126)
T 2hgm_A 53 GCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 123 (126)
T ss_dssp TCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHHHH
T ss_pred CCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHHHh
Confidence 46899999999998 788 775 457789999999999999999999998899999999999999887664
No 208
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.57 E-value=1.2e-15 Score=111.57 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=63.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcC----CCccce-EEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDF----VLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~----g~~~~~-v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V 180 (196)
...+|||+|||+++|+++|+++|++| |.+... ..+.....+.++|||||+|.++++|.+|+.+|+..++|+.|.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 82 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 82 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeee
Confidence 45799999999999999999999999 521000 0122222346689999999999999999966999999999999
Q ss_pred EECCh
Q 029263 181 FPSSH 185 (196)
Q Consensus 181 ~~~~~ 185 (196)
..+..
T Consensus 83 ~~~~~ 87 (172)
T 2g4b_A 83 RRPHD 87 (172)
T ss_dssp ECCSS
T ss_pred cCCcc
Confidence 98753
No 209
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=5.3e-15 Score=113.60 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=68.6
Q ss_pred CcccEEEEcCCCC-CCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEE
Q 029263 105 VHTGILRLRGLPF-SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFP 182 (196)
Q Consensus 105 ~~~~~l~v~nLp~-~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~ 182 (196)
..+.+|||+|||+ ++|+++|+++|+.||.+. .|.++.+. +|||||+|.+.++|.+|+. +||..+.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~-~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEE-EEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeE-EEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3567999999999 999999999999999776 78888765 7899999999999999997 599999999999998
Q ss_pred CCh
Q 029263 183 SSH 185 (196)
Q Consensus 183 ~~~ 185 (196)
+..
T Consensus 107 a~~ 109 (229)
T 2adc_A 107 SKH 109 (229)
T ss_dssp CSC
T ss_pred ecC
Confidence 863
No 210
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=1.6e-15 Score=102.69 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=62.9
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEE
Q 029263 112 LRGLPFSAGKDDIMDFF------------KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYI 178 (196)
Q Consensus 112 v~nLp~~~t~~~l~~~F------------~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i 178 (196)
+.|||+.+|+++|++.| ++||.+. +|.++++.+|+++|||||+|.++++|.+|+.. ||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~-~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVE-EMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE-EEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceE-EEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888887777 9999877 79999888899999999999999999999975 9999999999
Q ss_pred EEEEC
Q 029263 179 ELFPS 183 (196)
Q Consensus 179 ~V~~~ 183 (196)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 211
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=2.1e-14 Score=112.37 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=66.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~ 183 (196)
....+|||+|||+++|+++|+++|+.||.+. .|.+. +++|||||+|.+.++|.+|+. +||..++|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPS-EVFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCS-EEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4557999999999999999999999999776 67775 357899999999999999997 5999999999999987
Q ss_pred C
Q 029263 184 S 184 (196)
Q Consensus 184 ~ 184 (196)
.
T Consensus 94 ~ 94 (261)
T 3sde_A 94 T 94 (261)
T ss_dssp C
T ss_pred c
Confidence 5
No 212
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=8.4e-15 Score=112.78 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=67.7
Q ss_pred CCcccEEEEcCCCCCC---------CHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCcc
Q 029263 104 AVHTGILRLRGLPFSA---------GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL 173 (196)
Q Consensus 104 ~~~~~~l~v~nLp~~~---------t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l 173 (196)
.....+|||+|||+.+ |+++|+++|++||.+. .|+++. ++|||||+|.+.++|+.|+.. ||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~-~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDID-RIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEE-EEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEE-EEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3456899999999998 7999999999999887 788874 589999999999999999965 99999
Q ss_pred ------------CCeEEEEEECChHH
Q 029263 174 ------------GSRYIELFPSSHEE 187 (196)
Q Consensus 174 ------------~gr~i~V~~~~~~~ 187 (196)
.|+.|.|.++....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 213
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=1.3e-14 Score=99.75 Aligned_cols=92 Identities=11% Similarity=0.136 Sum_probs=78.2
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHHHHHHhhcccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 81 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~~~~~~~~~~~ 81 (196)
..|+++|+++|+.||.|.++.+. .++.++|||||+|.+.++|.+|++ +|+..++|+.|.|..+.+...
T Consensus 19 ~~t~~~l~~~F~~~G~v~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~---------- 87 (115)
T 3lqv_A 19 KITAEEMYDIFGKYGPIRQIRVG-NTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA---------- 87 (115)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEE-CSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH----------
T ss_pred CCCHHHHHHHHHhcCCeEEEEEe-eCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh----------
Confidence 46899999999999999998655 246679999999999999999995 899999999999988774431
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHhhcCCCcc
Q 029263 82 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 135 (196)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~ 135 (196)
..+++...++++|.++|+.||...
T Consensus 88 ------------------------------~~~~~~~~~~~~l~~~~~~~g~~~ 111 (115)
T 3lqv_A 88 ------------------------------FQKMDTKKKEEQLKLLKEKYGINT 111 (115)
T ss_dssp ------------------------------TTTSCHHHHHHHHHHHHHHHCCCC
T ss_pred ------------------------------hhhhhHhHhHHHHHHHHHHhCCCC
Confidence 056788889999999999999643
No 214
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=2.3e-14 Score=99.01 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=70.8
Q ss_pred cccEEEEcCCCC-----CCCHHHHHHHhhcCCCccceEEEEeCC-----CCCCceEEEEEeCCHHHHHHHHHh-CCCccC
Q 029263 106 HTGILRLRGLPF-----SAGKDDIMDFFKDFVLSEDSIHITMNS-----DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG 174 (196)
Q Consensus 106 ~~~~l~v~nLp~-----~~t~~~l~~~F~~~g~~~~~v~l~~~~-----~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~ 174 (196)
++.+|+|+||-. +-.++||++.|++||.+. +|.++.+. ++.++|++||+|.+.++|.+|+.. ||..++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~-~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN-RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEE-EEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEe-EEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 467999999932 224689999999999877 78888764 356789999999999999999975 999999
Q ss_pred CeEEEEEECChHHHH
Q 029263 175 SRYIELFPSSHEEMD 189 (196)
Q Consensus 175 gr~i~V~~~~~~~~~ 189 (196)
||.|+|.++....+.
T Consensus 98 GR~i~v~~~~~~~f~ 112 (118)
T 3ue2_A 98 GRKVVAEVYDQERFD 112 (118)
T ss_dssp TEECEEEEECHHHHH
T ss_pred CcEEEEEEcChHhcc
Confidence 999999999887765
No 215
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.1e-15 Score=99.02 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=58.6
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+ .+..|.++|||||+|.+.++|.+||++++..++|+.|.|....
T Consensus 22 ~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 22 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4799999999999999999854 5667999999999999999999999999999999999997544
No 216
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=7.3e-15 Score=110.02 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=67.1
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEECC
Q 029263 107 TGILRLRGLPF-SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELFPSS 184 (196)
Q Consensus 107 ~~~l~v~nLp~-~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~-~~g~~l~gr~i~V~~~~ 184 (196)
+.+|||+|||+ ++|+++|+++|+.||.+. .|.++.+. +|||||+|.+.++|.+|+. +||..++|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~-~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCS-EEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 46899999999 999999999999999776 78887764 6799999999999999997 59999999999999986
Q ss_pred h
Q 029263 185 H 185 (196)
Q Consensus 185 ~ 185 (196)
.
T Consensus 78 ~ 78 (198)
T 1qm9_A 78 H 78 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 217
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.54 E-value=8.9e-15 Score=96.27 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=56.9
Q ss_pred CchHHHHHHHhcccC--cceeEE-EecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcCh
Q 029263 3 LPQVQVLCTIHHQLM--DIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKR 68 (196)
Q Consensus 3 ~~te~dl~~~F~~~g--~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~ 68 (196)
..|+++|+++|+.|| .|.++. +.+. +|+++|||||+|.+.++|++|| .+|+..++|+.|.|..+.+
T Consensus 12 ~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 12 WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 468999999999999 899985 4564 9999999999999999999999 6899999999999976663
No 218
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=2.5e-14 Score=92.81 Aligned_cols=67 Identities=15% Similarity=-0.005 Sum_probs=59.0
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYK 73 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~ 73 (196)
..||++|+++|++||+|.++.+.. ++|||||+|.++++|.+|+ .+|+..++++.|.|..++..++..
T Consensus 18 ~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~~~~ 85 (89)
T 2wbr_A 18 QIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEVQS 85 (89)
T ss_dssp TCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHHHHH
T ss_pred cCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHHHHH
Confidence 468999999999999999986653 7899999999999999999 589999999999998887666543
No 219
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=94.44 Aligned_cols=64 Identities=30% Similarity=0.355 Sum_probs=58.8
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|++||+++|+.| .|.++. +.+.+|+++|||||+|.+.++|.+||++|+..++|+.|.|..+.
T Consensus 21 ~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 21 NVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp SCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 46899999999998 999984 55789999999999999999999999999999999999998776
No 220
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.52 E-value=1.2e-14 Score=92.21 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=56.9
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEE
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 65 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~ 65 (196)
..|+++|+++|+.||.|.++. +.++ +|+++|||||+|.+.++|++|+++++..++|+.|.|..
T Consensus 10 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 10 NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp SCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 468999999999999999985 4454 89999999999999999999999999999999998854
No 221
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.52 E-value=6.1e-15 Score=97.38 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=56.1
Q ss_pred CchHHHHHHHhcccC-cceeEE-EecC-CCcccceEEEEeCCHHHHHHHHHh--cccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLM-DIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQR--NRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g-~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~~--~~~~l~~~~i~v~~~~ 67 (196)
..||+||+++|++|| .|.+|. +.|+ +|.++|||||+|.+.++|.+||+. ++..++|+.|.|..+.
T Consensus 12 ~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 12 AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 579999999999999 788885 4454 899999999999999999999963 5667999999997655
No 222
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.52 E-value=3.7e-14 Score=92.52 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=56.8
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEE
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 65 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~ 65 (196)
..|+++|+++|+.||.|.++. +.++ +|+++|||||+|.+.++|.+||+.++..++|+.|.|..
T Consensus 22 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 22 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 468999999999999999985 4554 79999999999999999999999899999999999864
No 223
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=7.9e-15 Score=94.59 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=54.3
Q ss_pred hHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCe-eEEE
Q 029263 5 QVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRR-YVEV 63 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~-~i~v 63 (196)
|+++|+++|++||.|.++.+...+|+++|||||+|.+.++|.+||+ +|+..++|+ .|.|
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 7899999999999999987667799999999999999999999995 899999998 7765
No 224
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=5.2e-14 Score=94.44 Aligned_cols=62 Identities=16% Similarity=0.027 Sum_probs=55.5
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+... ++|||||+|.+.++|.+|++ +++..++|+.|.|..+.
T Consensus 11 ~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 11 GAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp SCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 4699999999999999999865533 78999999999999999995 79999999999998776
No 225
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.51 E-value=6e-14 Score=91.42 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=58.4
Q ss_pred CchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcCh
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 68 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~ 68 (196)
..|+++|+++|+.||.|.++. +.+ .+|.++|||||+|.+.++|++|++ +++..++|+.|.|..+.+
T Consensus 17 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 17 EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 468999999999999999985 455 489999999999999999999995 799999999999977653
No 226
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.51 E-value=3.1e-15 Score=106.34 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=59.3
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~ 69 (196)
..||+||+++|++|| |++|. +.|++|+++|||||+|.+.++|++||++|+..++++.|.|..+.+.
T Consensus 57 ~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 57 KATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp TCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCS
T ss_pred CCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCC
Confidence 468999999999988 77885 4577899999999999999999999999999999999999887743
No 227
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.51 E-value=2.9e-14 Score=95.69 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=59.8
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCC-eeEEEEEcChHH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGR-RYVEVFRSKRQE 70 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~-~~i~v~~~~~~~ 70 (196)
..|+++|+++|+.||.|.+|. +.++ +|+++|||||+|.+.++|.+|| .+|+..++| +.|.|..+.+.+
T Consensus 23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHHH
T ss_pred HHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchhh
Confidence 457899999999999999985 4455 6999999999999999999999 589999998 999998876544
No 228
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.8e-14 Score=93.40 Aligned_cols=65 Identities=15% Similarity=0.096 Sum_probs=59.0
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.+.+|+++|||||+|.+.++|.+|| .+++..++++.|.|..+.
T Consensus 28 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 28 SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 469999999999999999985 45779999999999999999999999 679999999999997765
No 229
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.51 E-value=5.3e-14 Score=90.85 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=58.5
Q ss_pred CchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.+ .+|.++|||||+|.+.++|.+|++ +++..++|+.|.|..+.
T Consensus 12 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 12 NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 578999999999999999985 445 589999999999999999999995 79999999999997765
No 230
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.50 E-value=6.1e-14 Score=91.77 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=59.0
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.+. +|+++|||||+|.+.++|++|+.+++..++|+.|.|..+.
T Consensus 17 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 17 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 468999999999999999985 4554 8999999999999999999999889999999999998765
No 231
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.2e-14 Score=93.71 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=59.0
Q ss_pred CchHHHHHHHhcccCcceeEEEe-c-CCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~-~-~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+. + .+|+++|||||+|.+.++|.+||++++..++|+.|.|..+.
T Consensus 21 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 21 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46899999999999999998654 5 37999999999999999999999999999999999997766
No 232
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.49 E-value=3.4e-14 Score=94.48 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=55.0
Q ss_pred CchHHHHHHHhcccCc--ceeEE-EecC-CCcccceEEEEeCCHHHHHHHHH-hccc----ccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMD--IVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQ----NMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~--i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~----~l~~~~i~v~~~~ 67 (196)
..|+++|+++|++||. |.+|. +.|+ +|+++|||||+|.+.++|.+||+ +|+. .++||.|.|..+.
T Consensus 20 ~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 20 HTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp TCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred cCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 5799999999999995 56775 4564 89999999999999999999995 6775 4899999997654
No 233
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=1.5e-13 Score=93.09 Aligned_cols=68 Identities=9% Similarity=-0.041 Sum_probs=59.7
Q ss_pred chHHHHHHHhcccCcceeEEEe-cC--CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHH
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFV-HK--NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEY 71 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~-~~--~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~ 71 (196)
.+++||++.|++||.|.+|.+. ++ +++++|||||+|.+.++|.+|+ .+||..++||.|.|..+....|
T Consensus 25 d~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f 96 (105)
T 2pe8_A 25 DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKF 96 (105)
T ss_dssp -CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHh
Confidence 3789999999999999998654 44 3689999999999999999999 6899999999999988886655
No 234
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=7.6e-14 Score=92.47 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=58.4
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.+.+|+++|||||+|.+.++|.+||+ +++..++++.|.|..+.
T Consensus 27 ~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 27 RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 468999999999999999985 457789999999999999999999996 89999999999997654
No 235
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=1.2e-13 Score=93.50 Aligned_cols=65 Identities=8% Similarity=-0.023 Sum_probs=58.5
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.+.+|+++|||||+|.+.++|.+||+ +++..++|+.|.|..+.
T Consensus 40 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 40 GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 468999999999999999984 557799999999999999999999995 79999999999997653
No 236
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.47 E-value=4.3e-14 Score=95.69 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=57.9
Q ss_pred hHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCe-eEEEEEcC
Q 029263 5 QVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRR-YVEVFRSK 67 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~-~i~v~~~~ 67 (196)
|+++|+++|+.||.|.++.+...+|+++|||||+|.+.++|.+||+ +|+..++|+ .|.|..+.
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFT 98 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSC
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcc
Confidence 8899999999999999997667799999999999999999999995 799999998 99997665
No 237
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=92.42 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=59.0
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+ .+. +|+++|||||+|.+.++|.+|| .+|+..++++.|.|..+.
T Consensus 19 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 19 TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4699999999999999999854 455 8999999999999999999999 789999999999998776
No 238
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.47 E-value=1.9e-13 Score=91.36 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=57.1
Q ss_pred CchHHHHHHHhcccCccee--------EE-Eec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEc
Q 029263 3 LPQVQVLCTIHHQLMDIVD--------VL-FVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 66 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~--------v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~ 66 (196)
..|+++|+++|+.||.|.+ +. +.+ .+|+++|||||+|.+.++|.+||+ +++..++|+.|.|..+
T Consensus 24 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 24 NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 4689999999999999998 74 455 489999999999999999999995 8999999999998754
No 239
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=99.23 Aligned_cols=69 Identities=20% Similarity=0.163 Sum_probs=61.2
Q ss_pred CchHHHHHHHhcccC--cceeEE-Eec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHH
Q 029263 3 LPQVQVLCTIHHQLM--DIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEY 71 (196)
Q Consensus 3 ~~te~dl~~~F~~~g--~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~ 71 (196)
..|+++|+++|+.|| .|.+|. +.| .+|+++|||||+|.+.++|.+||+ +|+..++|+.|.|..+.+...
T Consensus 66 ~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~~~ 139 (156)
T 3n9u_C 66 WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNL 139 (156)
T ss_dssp TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHHHH
T ss_pred CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCCcc
Confidence 468999999999999 899985 456 489999999999999999999995 599999999999998876543
No 240
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.1e-13 Score=90.28 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=57.6
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.++ +|+++|||||+|.+.++|.+||+ +++..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 26 YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 468999999999999999985 4454 78999999999999999999995 79999999999997654
No 241
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.46 E-value=1.2e-13 Score=89.61 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=57.4
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRS 66 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~ 66 (196)
..|+++|+++|++||.|.++.+ .+ .+|+++|||||+|.+.++|.+|+ .+|+..++|+.|.|..+
T Consensus 18 ~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 18 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4689999999999999999853 45 68999999999999999999999 68999999999998654
No 242
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2e-13 Score=90.45 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=58.4
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+ .+. +|+++|||||+|.+.++|.+||+ +|+..++++.|.|..+.
T Consensus 16 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 16 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4689999999999999999854 454 79999999999999999999995 89999999999997766
No 243
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=94.97 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=59.0
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|. +.+.+|.++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 18 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 18 ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 468999999999999999985 456799999999999999999999995 79999999999997776
No 244
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=3e-14 Score=90.30 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=56.2
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEE
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 65 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~ 65 (196)
..|+++|+++|+.||.|.++.+ .+ .+|.++|||||+|.+.++|.+||+.++..++|+.|.|..
T Consensus 10 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 10 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp SCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 4689999999999999999853 45 479999999999999999999998899999999988854
No 245
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.46 E-value=1.9e-13 Score=92.19 Aligned_cols=65 Identities=9% Similarity=0.011 Sum_probs=58.2
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHH-hcccccCC---eeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGR---RYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~---~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.+.+|+++|||||+|.+.++|.+||+ +++..+.+ +.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 26 QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 468999999999999999985 557799999999999999999999995 89998887 999997766
No 246
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=94.78 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=60.2
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChHH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 70 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~~ 70 (196)
..|+++|+++|+.||.|.+|.+ .+. +|.++|||||+|.+.++|++||.+|+..++|+.|.|..+....
T Consensus 36 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 36 RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK 105 (114)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHHH
T ss_pred CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCCc
Confidence 4689999999999999999865 454 6999999999999999999999889999999999998776443
No 247
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.45 E-value=1.4e-13 Score=91.13 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=57.1
Q ss_pred CchHHHHHHHhcccCcceeE-EEe-cCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDV-LFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v-~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|++||+++|+.||.|.++ ++. ..+|+++|||||+|.+.++|++||+ +|+..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 26 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp TCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999875 333 4689999999999999999999995 89999999999997654
No 248
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3e-13 Score=92.61 Aligned_cols=65 Identities=15% Similarity=0.019 Sum_probs=59.0
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.+.+|+++|||||+|.+.++|.+||+ +++..++++.|.|..+.
T Consensus 26 ~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 26 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 468999999999999999985 557789999999999999999999995 89999999999997765
No 249
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=6.8e-13 Score=91.00 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=68.0
Q ss_pred cccEEEEcCCCCCC----------CHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccC
Q 029263 106 HTGILRLRGLPFSA----------GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLG 174 (196)
Q Consensus 106 ~~~~l~v~nLp~~~----------t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~ 174 (196)
.+++|.++||=..- .++||++.|++||.+. +|.+.++ .++|+|||+|.+.++|.+|+.. ||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~-~v~i~~~---~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVI-HIYVDKN---SAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCS-EEEECTT---CTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEE-EEEEecC---CCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46789999983221 2358899999999876 7877654 2589999999999999999975 999999
Q ss_pred CeEEEEEECChHHHHHH
Q 029263 175 SRYIELFPSSHEEMDEA 191 (196)
Q Consensus 175 gr~i~V~~~~~~~~~~~ 191 (196)
||.|+|.++....+...
T Consensus 82 GR~i~v~~~~~~~y~~~ 98 (114)
T 3s6e_A 82 GKMITAAYVPLPTYHNL 98 (114)
T ss_dssp TEECEEEEECHHHHHHH
T ss_pred CEEEEEEEEcHHHHHHh
Confidence 99999999998888764
No 250
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.45 E-value=1.5e-13 Score=90.54 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=58.6
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+...+|+++|||||+|.+.++|++|++ +++..++++.|.|..+.
T Consensus 19 ~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 19 DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 468999999999999999986555689999999999999999999995 79999999999997665
No 251
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.9e-13 Score=89.43 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=56.9
Q ss_pred CchHHHHHHHhcccCcceeEEEe-cC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRS 66 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~-~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~ 66 (196)
..|+++|+++|+.||.|.++.+. ++ +|+++|||||+|.+.++|.+|+ .+|+..++++.|.|..+
T Consensus 27 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 27 SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 46899999999999999998654 44 6899999999999999999999 58999999999999654
No 252
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.2e-13 Score=91.67 Aligned_cols=65 Identities=12% Similarity=0.024 Sum_probs=58.6
Q ss_pred CchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|. +.+ .+|+++|||||+|.+.++|.+||+ +++..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 26 DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 468999999999999999985 445 489999999999999999999995 89999999999997766
No 253
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.44 E-value=2.4e-13 Score=94.52 Aligned_cols=65 Identities=15% Similarity=0.096 Sum_probs=58.8
Q ss_pred CchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|. +.+ .+|.++|||||+|.+.++|.+||++++..++|+.|.|..+.
T Consensus 47 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 47 GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 468999999999999999985 445 58999999999999999999999889999999999997765
No 254
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.44 E-value=2.4e-13 Score=92.62 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=58.0
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+ .+. +|.++|||||+|.+.++|.+||+.++..++|+.|.|..+.
T Consensus 36 ~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 36 QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 4689999999999999999865 454 7999999999999999999999877899999999997765
No 255
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.44 E-value=2.1e-13 Score=93.66 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=58.6
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|. +.+. +|+++|||||+|.+.++|++|| .+|+..++++.|.|..+.
T Consensus 36 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 36 EFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp SCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 468999999999999999984 4565 8999999999999999999999 679999999999997665
No 256
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.44 E-value=2.1e-13 Score=90.63 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=59.2
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~ 69 (196)
..|+++|+++|+.||.|.++.+ .+ .+|.++|||||+|.+.++|.+|+ .+++..++|+.|.|..+.+.
T Consensus 13 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 13 DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 4689999999999999999864 45 37999999999999999999999 58999999999999877643
No 257
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.3e-13 Score=93.52 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=58.5
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+ .+ .+|+++|||||+|.+.++|++||+.++..++|+.|.|..+.
T Consensus 38 ~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 38 ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 4789999999999999999854 45 47999999999999999999999779999999999997765
No 258
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=2.7e-13 Score=91.24 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=57.1
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.|+ |.+|. +.+. +|+++|||||+|.+.++|.+||++++..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 26 NTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp TCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 468999999999985 98885 4554 7999999999999999999999999999999999997766
No 259
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.6e-13 Score=92.59 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=58.7
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+ .+. +|+++|||||+|.+.++|.+||+ +++..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 26 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 4689999999999999999864 454 89999999999999999999996 79999999999998776
No 260
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3e-13 Score=90.96 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=58.3
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+ .+ +|.++|||||+|.+.++|.+||+ +|+..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 26 GIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp TCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 4689999999999999999854 46 99999999999999999999995 89999999999997766
No 261
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.44 E-value=3.4e-13 Score=92.50 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=58.6
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|. +.+. +|.++|||||+|.+.++|++||+ +++..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 26 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 468999999999999999985 4554 89999999999999999999995 79999999999998776
No 262
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=92.68 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=58.1
Q ss_pred CchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.+ .+|+++|||||+|.+.++|.+||+ +++..++|+.|.|..+.
T Consensus 37 ~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 37 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 468999999999999999985 445 489999999999999999999994 89999999999997665
No 263
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4e-13 Score=90.80 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=58.0
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+ .+. +|.++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 34 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 34 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 4689999999999999999854 454 79999999999999999999995 89999999999997665
No 264
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3e-13 Score=91.02 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=60.0
Q ss_pred CchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQE 70 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~ 70 (196)
..|+++|+++|+.||.|.++. +.+ .+|.++|||||+|.+.++|.+||+ +++..++|+.|.|..+.+..
T Consensus 19 ~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 19 EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 468999999999999999985 445 489999999999999999999994 89999999999998776544
No 265
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=90.89 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=57.4
Q ss_pred CchHHHHHHHhcccCcceeE-EEe-cCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDV-LFV-HKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v-~~~-~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++ ++. ..+|+++|||||+|.+.++|++|| .+|+..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 26 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp TCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 46899999999999999865 333 568999999999999999999999 689999999999997765
No 266
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.44 E-value=4e-13 Score=93.44 Aligned_cols=65 Identities=6% Similarity=-0.055 Sum_probs=59.1
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.+.+|+++|||||+|.+.++|.+|++ +++..++|+.|.|..+.
T Consensus 46 ~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 46 GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 468999999999999999985 456799999999999999999999995 89999999999997766
No 267
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=93.36 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=58.1
Q ss_pred CchHHHHHHHhcccCcceeEE-Eec-CCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|. +.+ .+|.++|||||+|.+.++|.+||+.++..++++.|.|..+.
T Consensus 27 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 27 STTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCT 93 (105)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEcc
Confidence 468999999999999999985 455 48999999999999999999999779999999999996655
No 268
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.2e-13 Score=89.80 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=57.0
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+....+.++|||||+|.+.++|.+||+ +++..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 26 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp TCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 468999999999999999996553333489999999999999999995 79999999999997766
No 269
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.3e-13 Score=89.54 Aligned_cols=65 Identities=17% Similarity=0.092 Sum_probs=58.8
Q ss_pred CchHHHHHHHhcccCcceeE-EEe-c-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDV-LFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v-~~~-~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++ .+. + .+|.++|||||+|.+.++|++||+ +++..++++.|.|..+.
T Consensus 16 ~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 16 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 46899999999999999988 654 5 589999999999999999999996 89999999999997766
No 270
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.9e-13 Score=91.27 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=57.2
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-C-CcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-N-NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~-g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.|| |.+|.+ .+. + |+++|||||+|.+.++|++||.+++..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 92 (104)
T 1wi8_A 26 DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVAD 92 (104)
T ss_dssp SCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECC
T ss_pred cCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEcc
Confidence 468999999999998 988854 454 4 899999999999999999999889999999999997766
No 271
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.8e-13 Score=92.29 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=57.6
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+....+.++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 40 ~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 40 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 468999999999999999997654445699999999999999999995 79999999999997765
No 272
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.4e-13 Score=91.24 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=58.4
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+ .+ .+|+++|||||+|.+.++|.+|| .+++..++++.|.|..+.
T Consensus 23 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 23 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 4689999999999999999864 45 47999999999999999999999 579999999999997766
No 273
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.1e-13 Score=89.83 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=57.2
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+....+.++|||||+|.+.++|.+||+ +++..+.++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 26 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred cCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 468999999999999999986554344579999999999999999995 89999999999997766
No 274
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.42 E-value=2.5e-13 Score=91.77 Aligned_cols=61 Identities=8% Similarity=0.104 Sum_probs=52.1
Q ss_pred HHHHHHHh-cccCcceeEEEe-cCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEc
Q 029263 6 VQVLCTIH-HQLMDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRS 66 (196)
Q Consensus 6 e~dl~~~F-~~~g~i~~v~~~-~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~ 66 (196)
++||++.| ++||.|.+|.+. +.+|+++|||||+|.+.++|.+|+ .+||..++||.|.|..+
T Consensus 40 ~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 40 FEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 35566666 999999998654 567899999999999999999999 58999999999988543
No 275
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.42 E-value=9.1e-14 Score=93.19 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=57.0
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC--CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK--NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~--~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.|| |.++.+ .+. +|+++|||||+|.+.++|.+||.+++..++|+.|.|..+.
T Consensus 30 ~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 30 DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp CCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECC
T ss_pred CCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEecc
Confidence 468999999999999 998864 453 8999999999999999999999889999999999987665
No 276
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-12 Score=87.42 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=60.2
Q ss_pred ccEEEEcCCC-------CCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEE
Q 029263 107 TGILRLRGLP-------FSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 179 (196)
Q Consensus 107 ~~~l~v~nLp-------~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~ 179 (196)
..+|.|.-.+ ..+|+++|+++|++||.+. .|.|+ +.++|||||+|.+.++|..|+.. +..+.|++|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~-~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVL-NLVLS----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEE-EEEEE----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEE-EEEEc----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEE
Confidence 3456665443 5689999999999999776 67777 57899999999999999999986 3446799999
Q ss_pred EEECChH
Q 029263 180 LFPSSHE 186 (196)
Q Consensus 180 V~~~~~~ 186 (196)
|.++.+.
T Consensus 84 V~~a~~~ 90 (100)
T 2d9o_A 84 ISWLEGQ 90 (100)
T ss_dssp EECSSCC
T ss_pred EEEccCC
Confidence 9998653
No 277
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=4.5e-13 Score=90.64 Aligned_cols=65 Identities=8% Similarity=0.035 Sum_probs=58.0
Q ss_pred CchHHHHHHHhcccCcceeEEEe-c--CCCcccceEEEEeCCHHHHHHHHH-h-cccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFV-H--KNNKFTGEAFCVLGYPLQVDFALQ-R-NRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~-~--~~g~~~G~afV~F~~~~~a~~Al~-~-~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+. + .+|.++|||||+|.+.++|.+||+ + |+..+.++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~ 95 (107)
T 2cph_A 26 QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 95 (107)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECC
T ss_pred cCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCC
Confidence 46899999999999999998654 4 289999999999999999999995 6 8999999999997766
No 278
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=5.8e-13 Score=90.14 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=58.5
Q ss_pred hHHHHHHHhcccCcceeEEEe-cCC---CcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHH
Q 029263 5 QVQVLCTIHHQLMDIVDVLFV-HKN---NKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEY 71 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~-~~~---g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~ 71 (196)
+++||++.|++||.|.+|.+. +.. ++++|+|||+|.+.++|.+|+ .+||..++||.|.|.......+
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSY 99 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHH
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHH
Confidence 568999999999999999754 433 368999999999999999999 6899999999999988776655
No 279
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=2.2e-13 Score=86.62 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=55.4
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 66 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~ 66 (196)
..|+++|+++|++||.|.++.+ .++ +|+++|||||+|.+.++|++|++..+..++|+.|.|..+
T Consensus 11 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 11 QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4689999999999999999854 454 799999999999999999999975448899999988653
No 280
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.7e-13 Score=90.99 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=58.2
Q ss_pred CchHHHHHHHhcccCcceeEEEe-c-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~-~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+. + .+|+++|||||+|.+.++|.+|| .+|+..++++.|.|..+.
T Consensus 23 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 23 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46899999999999999998654 4 48899999999999999999999 689999999999997665
No 281
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=2.4e-13 Score=91.51 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=58.3
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+ .+. +|+++|||||+|.+.++|++||+ +|+..++++.|.|..+.
T Consensus 24 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 24 RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 4689999999999999999864 454 69999999999999999999995 89999999999997766
No 282
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.2e-13 Score=91.73 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=58.2
Q ss_pred CchHHHHHHHhcc-cCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHH-hcccc-cCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQ-LMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQN-MGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~-~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~-l~~~~i~v~~~~ 67 (196)
..|+++|+++|+. ||.|.++. +.+.+|+++|||||+|.+.++|.+||+ +++.. ++|+.|.|..+.
T Consensus 20 ~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 20 DVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp TCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred CCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 4689999999999 99999984 556799999999999999999999995 89999 999999986654
No 283
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=7.9e-13 Score=88.88 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=56.7
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|. +.+. +|+++|||||+|.+.++|.+||+ ++..++|+.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 26 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp SCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCC
T ss_pred cCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecC
Confidence 468999999999999999985 4554 79999999999999999999997 4778999999997766
No 284
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.40 E-value=5.2e-13 Score=90.87 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=58.2
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+ .+ .+|.++|||||+|.+.++|.+||+ +++..++|+.|.|..+.
T Consensus 37 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 37 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 4689999999999999999864 45 489999999999999999999995 89999999999997665
No 285
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=5.4e-13 Score=90.83 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=57.7
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHHH-hc------ccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQ-RN------RQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al~-~~------~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+ .+ .+|.++|||||+|.+.++|.+||+ ++ +..++|+.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 26 DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 99 (111)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECC
Confidence 4699999999999999999864 45 478999999999999999999995 77 899999999997765
No 286
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.40 E-value=4.2e-13 Score=94.18 Aligned_cols=65 Identities=18% Similarity=0.116 Sum_probs=57.5
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+ .+ .+|+++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 57 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 57 YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4689999999999999999854 45 478999999999999999999995 89999999999996554
No 287
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=5.4e-13 Score=88.86 Aligned_cols=65 Identities=18% Similarity=0.091 Sum_probs=56.9
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC----CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK----NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~----~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+ .+. +|.++|||||+|.+.++|.+||+ +++..++++.|.|..+.
T Consensus 16 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (98)
T 2cpf_A 16 STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 86 (98)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Confidence 4689999999999999999854 343 44899999999999999999996 79999999999997766
No 288
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.39 E-value=6.5e-13 Score=94.14 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=58.3
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|. +.+. +|+++|||||+|.+.++|.+||+ +|+..++++.|.|..+.
T Consensus 53 ~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 53 TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999985 4454 79999999999999999999995 79999999999997766
No 289
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.8e-13 Score=88.81 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=54.8
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEE
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVF 64 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~ 64 (196)
..|+++|+++|+.||.|.++.+ .+ .+|.++|||||+|.+.++|.+|++ +|+..+.++.+++.
T Consensus 16 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 16 GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 4689999999999999999854 45 489999999999999999999995 89999999987763
No 290
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.39 E-value=2.6e-13 Score=91.12 Aligned_cols=64 Identities=8% Similarity=0.074 Sum_probs=57.7
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.+.+|+++|||||+|.+.++|++||+ ++..++|+.|.|..+.
T Consensus 20 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 20 RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 468999999999999999984 556799999999999999999999999 9999999999986654
No 291
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.39 E-value=4.2e-13 Score=90.66 Aligned_cols=65 Identities=14% Similarity=0.043 Sum_probs=57.5
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHHH-hccccc---CCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNM---GRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l---~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+ .+. +|+++|||||+|.+.++|.+||+ +++..+ .++.|.|..+.
T Consensus 24 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 24 NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 4689999999999999999864 444 79999999999999999999995 899887 88999997766
No 292
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=89.40 Aligned_cols=65 Identities=9% Similarity=0.066 Sum_probs=57.4
Q ss_pred CchHHHHHHHhcccCcce-eEE-EecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCee----EEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIV-DVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRY----VEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~-~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~----i~v~~~~ 67 (196)
..|+++|+++|+.||.|. ++. +.++ +|+++|||||+|.+.++|++||+ +|+..+.++. |.|..+.
T Consensus 20 ~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 20 YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence 479999999999999999 884 4564 89999999999999999999996 8999999998 8886655
No 293
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.39 E-value=6e-13 Score=90.89 Aligned_cols=63 Identities=14% Similarity=-0.020 Sum_probs=55.6
Q ss_pred CchHHHHHHHhcccC-cceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLM-DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g-~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|++||+++|+.|| .|..+.+.. +.++|||||+|.+.++|++|| .+|+..++|+.|.|..+.
T Consensus 39 ~~te~dL~~~F~~~G~~v~~v~i~~--~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 39 GCSWQDLKDLARENSLETTFSSVNT--RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCHHHHHHHHHHHTCCCSEEECSS--CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCHHHHHHHHHHhCCeeEEEEEEc--CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 468999999999999 888886542 358899999999999999999 589999999999997765
No 294
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.39 E-value=4.4e-13 Score=87.38 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=56.3
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCc-ccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNK-FTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~-~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+ .+. ++. ++|||||+|.+.++|.+|++ +|+..++|+.|.|..+.
T Consensus 15 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 15 NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 5689999999999999999853 443 344 89999999999999999996 79999999999997664
No 295
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.38 E-value=4e-13 Score=92.57 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=56.8
Q ss_pred CchHHHHHHHhcccCcceeEEEe-c-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 66 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~-~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~ 66 (196)
..|+++|+++|+.||.|.++.+. + .+|+++|||||+|.+.++|++||+ +|+..++|+.|.|..+
T Consensus 51 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 51 EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 46899999999999999998654 5 479999999999999999999995 7999999999988653
No 296
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=7e-13 Score=90.66 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=57.8
Q ss_pred CchHHHHHHHhcccCcce--------eEE-Eec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIV--------DVL-FVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~--------~v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|. .|. +.+ .+|+++|||||+|.+.++|.+||+ +|+..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 26 SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp TCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred CCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 468999999999999998 574 345 589999999999999999999995 79999999999997766
No 297
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.2e-12 Score=87.74 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=52.2
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|++||+|.+|.+. ++++|||||+|.+.++|..||+. ...+.+++|.|..+.
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLE 88 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEcc
Confidence 46899999999999999999766 57899999999999999999975 444678888886554
No 298
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=87.30 Aligned_cols=62 Identities=13% Similarity=-0.036 Sum_probs=53.1
Q ss_pred CCchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccc--cCCeeEEEEEcC
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQN--MGRRYVEVFRSK 67 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~--l~~~~i~v~~~~ 67 (196)
+..|+++|+++|++||.|.+|.+.. ++|||||+|++.++|.+|++ +++.. ++|++|.|..+.
T Consensus 31 ~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 31 DGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 3579999999999999999997653 57899999999999999995 67664 789999997665
No 299
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.38 E-value=9.5e-14 Score=93.12 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=57.5
Q ss_pred CchHHHHHHHhcccCcceeEEEec-CCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~-~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+.++.+ .+|+++|||||+|.+.++|.+||++++..+.|+.|.|..+.
T Consensus 28 ~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 28 NKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 468999999999999998843343 57899999999999999999999999999999999997665
No 300
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=9.8e-13 Score=89.79 Aligned_cols=65 Identities=11% Similarity=-0.023 Sum_probs=56.0
Q ss_pred CchHHHHH---HHhcccCcceeEEEe-cC----CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLC---TIHHQLMDIVDVLFV-HK----NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~---~~F~~~g~i~~v~~~-~~----~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+ ++|+.||.|.++.+. +. .++++|||||+|.+.++|++||+ +|+..++|+.|.|..+.
T Consensus 26 ~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 26 RLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp TTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred CCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 46899999 999999999998654 33 23677999999999999999995 79999999999997765
No 301
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.4e-12 Score=88.56 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=57.0
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+. .++.++|||||+|.+.++|++|| .+|+..+.++.|.|..+.
T Consensus 33 ~~t~~~l~~~F~~~G~v~~~~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 33 DIRTKDIEDVFYKYGAIRDIDLK-NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEC-CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEE-ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 46999999999999999998764 35678999999999999999999 689999999999997665
No 302
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.37 E-value=6.9e-13 Score=91.81 Aligned_cols=67 Identities=10% Similarity=-0.115 Sum_probs=55.9
Q ss_pred CchHHHHHHHhcccCcceeE-EEecC-CCcccceEEEEeCC----HHH----HHHHHH---hcccccCCeeEEEEEcChH
Q 029263 3 LPQVQVLCTIHHQLMDIVDV-LFVHK-NNKFTGEAFCVLGY----PLQ----VDFALQ---RNRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v-~~~~~-~g~~~G~afV~F~~----~~~----a~~Al~---~~~~~l~~~~i~v~~~~~~ 69 (196)
+.|+++|+++|+.||+|.++ ++.|+ ||.++|||||+|.+ +++ |.+|+. +++..++|+.|.|......
T Consensus 17 ~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 17 NIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp CCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 46899999999999999998 56786 99999999999996 433 788876 4999999999999876543
No 303
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.37 E-value=8.8e-13 Score=101.32 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=61.6
Q ss_pred CchHHHHHHHhcccC--cceeEE-EecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChHHH
Q 029263 3 LPQVQVLCTIHHQLM--DIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEY 71 (196)
Q Consensus 3 ~~te~dl~~~F~~~g--~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~~~ 71 (196)
..|+++|+++|+.|| .|.+|. +.|. +|+++|||||+|.+.++|.+||+ +|+..|.++.|.|..+.+...
T Consensus 79 ~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~~~ 152 (229)
T 3q2s_C 79 WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQFL 152 (229)
T ss_dssp TCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHHHH
T ss_pred CCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCCcc
Confidence 468999999999999 999984 4564 99999999999999999999995 899999999999988876654
No 304
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-12 Score=89.11 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=54.7
Q ss_pred hHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 5 QVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
++++|+++|++||.|.+|.+.+. .++|||||+|.+.++|.+|+ .+|+..++|+.|.|..+.
T Consensus 39 ~e~~l~~~f~~~G~v~~v~i~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~ 100 (112)
T 2dit_A 39 IREDLRVECSKFGQIRKLLLFDR--HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 100 (112)
T ss_dssp HHHHHHHHGGGTSCCSEEEEETT--CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHccCCEeEEEEecC--CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 47899999999999999977654 38999999999999999999 689999999999997765
No 305
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.37 E-value=1.9e-13 Score=89.63 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=56.6
Q ss_pred CchHHHHHHHhcccCcceeEEEe-cC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~-~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~ 69 (196)
..|+++|+++|+.||.|.++.+. +. +|+++|||||+|.+.+ |.+|++ +|+..++|+.|.|..+...
T Consensus 12 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 12 SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 56899999999999999998644 54 7999999999999999 999995 7999999999999887644
No 306
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.9e-12 Score=88.65 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=55.9
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHH-hccccc--------CCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNM--------GRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l--------~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++. +.+.+|.++|||||+|.+.++|.+||+ +|+..+ .+++|.|..+.
T Consensus 36 ~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 36 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp TCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 468999999999999999985 457799999999999999999999995 899988 46677775543
No 307
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=91.84 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=55.6
Q ss_pred chHHHHH----HHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcCh
Q 029263 4 PQVQVLC----TIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKR 68 (196)
Q Consensus 4 ~te~dl~----~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~ 68 (196)
.|+++|+ ++|++||.|.+|.+. .+|+++|||||+|.+.++|..|| .+|+..+.|++|.|..+..
T Consensus 41 ~~e~~L~~~L~~~F~~~G~I~~v~i~-~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 41 VPKEKLQALLYALASSQGDILDIVVD-LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp SCHHHHHHHHHHHHHHHSCEEEEEEC-CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCC
T ss_pred CCHHHHHHHHHHHhccCCCeEEEEec-cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccC
Confidence 5677765 799999999998654 57899999999999999999999 6899999999999977653
No 308
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=87.75 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=55.4
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.| . ++.+.+|+++|||||+|.+.++|++||+ +++..+.++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~g~v-~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 26 SATEETLQEVFEKATFI-K-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp TCCHHHHHHHCSSCSEE-E-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCHHHHHHHHHhCCEE-E-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 47999999999998877 2 2345789999999999999999999996 89999999999997776
No 309
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=5.5e-12 Score=86.46 Aligned_cols=69 Identities=4% Similarity=-0.017 Sum_probs=60.0
Q ss_pred hHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHHHHHH
Q 029263 5 QVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEYYKAI 75 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~~~~~ 75 (196)
.++||++.|++||.|.+|.+...+ ++|+|||+|.+.++|.+|+ .+||..++||.|.|.......|....
T Consensus 30 l~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~f 99 (114)
T 3s6e_A 30 IKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLF 99 (114)
T ss_dssp HHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHHC
T ss_pred HHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHhC
Confidence 467999999999999999765433 5899999999999999999 68999999999999988888776543
No 310
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.36 E-value=2.2e-12 Score=93.23 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=58.3
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|. +.+. +|.++|||||+|.+.++|++||+ +++..++++.|.|..+.
T Consensus 50 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 50 YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999985 4554 79999999999999999999996 79999999999997765
No 311
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2e-12 Score=85.99 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=54.8
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+. +++|||||+|.+.++|.+|| .+++..++++.|.|..+.
T Consensus 24 ~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 24 DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 36899999999999999998763 67899999999999999999 679999999999997665
No 312
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.4e-12 Score=89.58 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=56.3
Q ss_pred CchHHHHHHHhcccCcceeEEEe-c-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~-~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+. + .+|+++|||||+|.+.++|++||+ +++ .+.++.|.|..+.
T Consensus 28 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 28 HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 46899999999999999998654 4 379999999999999999999996 455 8999999998775
No 313
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.35 E-value=1.9e-12 Score=90.16 Aligned_cols=65 Identities=9% Similarity=0.044 Sum_probs=58.4
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+ .+. +|.++|||||+|.+.++|++|| .+|+..++++.|.|..+.
T Consensus 33 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 33 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 4689999999999999999864 454 8999999999999999999999 589999999999997665
No 314
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=92.09 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=56.4
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEE
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFR 65 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~ 65 (196)
..|+++|+++|+.||.|.++.+ .+ .+|+++|||||+|.+.++|++|| .+++..++|+.|.|..
T Consensus 74 ~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 74 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp TCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4689999999999999999864 45 48999999999999999999999 5899999999999853
No 315
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.34 E-value=1.3e-12 Score=86.72 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=55.7
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|..+ ..+|+++|||||+|.+.++|.+||+ +++..++|+.|.|..+.
T Consensus 27 ~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 27 NITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp SCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 46899999999999887766 5688999999999999999999996 89999999999997765
No 316
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.7e-12 Score=85.24 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=55.6
Q ss_pred CchHHHHH----HHhcccCcceeEEEe-cCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLC----TIHHQLMDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~----~~F~~~g~i~~v~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+ ++|+.||.|.+|.+. +..+ +|||||+|.+.++|.+||+ +|+..++|+.|.|..+.
T Consensus 20 ~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 20 RLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp TSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 46899999 999999999999654 5544 8999999999999999995 89999999999997765
No 317
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=3.3e-12 Score=88.14 Aligned_cols=67 Identities=10% Similarity=0.072 Sum_probs=58.0
Q ss_pred hHHHHHHHhcccCcceeEEEe-cC-----CCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHH
Q 029263 5 QVQVLCTIHHQLMDIVDVLFV-HK-----NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEY 71 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~-~~-----~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~ 71 (196)
.++||++.|++||.|.+|.+. +. +++++|+|||+|.+.++|.+|+ .+||..++||.|.|.......|
T Consensus 38 leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f 111 (118)
T 3ue2_A 38 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERF 111 (118)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHH
T ss_pred HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhc
Confidence 478999999999999998543 32 4678899999999999999999 6899999999999988776655
No 318
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.34 E-value=3.1e-12 Score=95.78 Aligned_cols=65 Identities=8% Similarity=0.041 Sum_probs=58.0
Q ss_pred CchHHHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|. ..+.+|.++|||||+|.+.++|.+||+..+..++|+.|.|....
T Consensus 120 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 120 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 468999999999999999985 45778999999999999999999999877779999999997544
No 319
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=3.1e-12 Score=103.43 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=61.6
Q ss_pred CCcccEEEEcC--CCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCcc---CCe-
Q 029263 104 AVHTGILRLRG--LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL---GSR- 176 (196)
Q Consensus 104 ~~~~~~l~v~n--Lp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l---~gr- 176 (196)
...+.+|||+| |++.+|+++|+++|++||.+. +|.+.. ++|||||+|.+.++|++|+.. ||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~-~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEE-EEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeE-EEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34568999999 689999999999999999876 666542 579999999999999999975 99877 345
Q ss_pred -EEEEEECC
Q 029263 177 -YIELFPSS 184 (196)
Q Consensus 177 -~i~V~~~~ 184 (196)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777663
No 320
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=2.5e-12 Score=86.46 Aligned_cols=61 Identities=16% Similarity=0.054 Sum_probs=52.2
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hccc--ccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQ--NMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~--~l~~~~i~v~~~~ 67 (196)
..|++||+++|++||.|.+|.+.. .+|||||+|++.++|..||+ +++. .+.|+.|.|..+.
T Consensus 27 ~~te~dL~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 27 KNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp SSHHHHHHTTTGGGSCEEEEEECS----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 569999999999999999997653 35899999999999999995 5654 5899999997665
No 321
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.33 E-value=4.2e-13 Score=94.30 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=56.5
Q ss_pred CchHHHHHHHhcccCccee--EE-EecC-CCcccceEEEEeCCHHHHHHHH-Hhccc----ccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVD--VL-FVHK-NNKFTGEAFCVLGYPLQVDFAL-QRNRQ----NMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~--v~-~~~~-~g~~~G~afV~F~~~~~a~~Al-~~~~~----~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.. |. +.|+ +|+++|||||+|.+. +|.+|| .+|+. .++|+.|.|..+.
T Consensus 34 ~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~ 106 (131)
T 2m2b_A 34 HSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAK 106 (131)
T ss_dssp TCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECC
T ss_pred CCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECC
Confidence 4689999999999999966 74 4566 999999999999999 999999 58998 9999999997665
No 322
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=9.4e-13 Score=88.80 Aligned_cols=61 Identities=7% Similarity=0.025 Sum_probs=52.3
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hc--ccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RN--RQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~--~~~l~~~~i~v~~~~ 67 (196)
..||+||+++|++||+|.+|.+.. .+|||||+|++.++|++|++ ++ +..+.|++|.|..+.
T Consensus 27 ~vte~dL~~lF~~fG~V~~v~i~~----~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 27 DVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp TSCHHHHHHHHHHHCCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 468999999999999999997663 27999999999999999996 44 478999999996655
No 323
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.33 E-value=1.9e-12 Score=93.62 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=58.4
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+ .+. +|+++|||||+|.+.++|.+||+ +|+..++|+.|.|..+.
T Consensus 81 ~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 81 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4689999999999999999864 454 89999999999999999999995 79999999999997766
No 324
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.7e-12 Score=85.53 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=52.7
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-h--cccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-R--NRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~--~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|++||.|.+|.+.. .+|||||+|.+.++|.+|++ + ++..+.|+.|.|..+.
T Consensus 26 ~~te~~L~~~F~~fG~v~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 26 EVTETEVIALGLPFGKVTNILMLK----GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TCCHHHHHHTTTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 568999999999999999997663 27999999999999999995 3 4567999999997766
No 325
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.32 E-value=4.5e-12 Score=92.49 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=58.3
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|..|.+ .+ .+|.++|||||+|.+.++|.+||+ +|+..++|+.|.|..+.
T Consensus 83 ~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 83 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4689999999999999999854 45 489999999999999999999995 89999999999997765
No 326
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.32 E-value=2.3e-12 Score=95.21 Aligned_cols=65 Identities=6% Similarity=-0.032 Sum_probs=58.8
Q ss_pred CchHHHHHHHhcccCcceeEEE-ecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+ .+.+|.++|||||+|.+.++|.+||+ +++..++|+.|.|..+.
T Consensus 99 ~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 99 GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp CCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4689999999999999999854 46789999999999999999999995 89999999999997765
No 327
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.32 E-value=1.4e-12 Score=86.68 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=57.1
Q ss_pred CchHHHHH----HHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLC----TIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~----~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+ ++|+.||.|.++.+. .+|.++|||||+|.+.++|.+|++ +++..++|+.|.|..+.
T Consensus 19 ~~~~~~l~~~l~~~f~~~G~i~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 19 KIKKDELKKSLHAIFSRFGQILDILVS-RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 87 (97)
T ss_dssp TSCHHHHHHHHHHHHGGGSCEEEEECC-HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEEE-cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEcc
Confidence 46899999 999999999998755 468899999999999999999995 79999999999997765
No 328
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=3.5e-12 Score=87.98 Aligned_cols=61 Identities=7% Similarity=0.025 Sum_probs=52.8
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hc--ccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RN--RQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~--~~~l~~~~i~v~~~~ 67 (196)
..||+||+++|++||.|.+|.+.. .+|||||+|++.++|.+|++ ++ +..++|++|.|..+.
T Consensus 42 ~vte~dL~~lF~~fG~V~~v~i~~----~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 42 DVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp TCCHHHHHHHHTTTSCCCEEEEEG----GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 479999999999999999997663 27999999999999999996 45 357999999997766
No 329
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=6.2e-12 Score=84.88 Aligned_cols=61 Identities=10% Similarity=-0.026 Sum_probs=52.4
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hccc--ccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQ--NMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~--~l~~~~i~v~~~~ 67 (196)
..|+++|+++|++||.|.+|.+.. .+|||||+|.+.++|.+|++ +++. .++|+.|.|..+.
T Consensus 26 ~~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 26 SVVEADLVEALEKFGTICYVMMMP----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 568999999999999999987653 37899999999999999995 5544 5899999997766
No 330
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=3e-12 Score=87.39 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=52.1
Q ss_pred chHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hc--ccccCCeeEEEEEcC
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RN--RQNMGRRYVEVFRSK 67 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~--~~~l~~~~i~v~~~~ 67 (196)
.|++||+++|++||+|.+|.+. +++|||||+|.+.++|.+|++ ++ +..+.|+.|.|..+.
T Consensus 38 ~te~~L~~lF~~fG~V~~v~i~----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 38 YSDSAVLKLAEPYGKIKNYILM----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp CCSHHHHTTTTTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 6899999999999999999765 357999999999999999995 54 456899999997665
No 331
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=6.8e-12 Score=82.22 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=53.7
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+. +|||||+|.+.++|++|+ .+++..+.++.|.|..+.
T Consensus 19 ~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 19 EATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 56999999999999999998766 589999999999999999 589999999999997765
No 332
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.30 E-value=3.1e-12 Score=90.41 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=58.3
Q ss_pred CchHHHHHHHhcccCcceeEEEe-cC-CCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~-~~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+. +. +|+++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 58 ~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 58 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46899999999999999998644 43 89999999999999999999994 79999999999997765
No 333
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.30 E-value=3e-12 Score=91.17 Aligned_cols=65 Identities=20% Similarity=0.127 Sum_probs=56.7
Q ss_pred CchHHHHHHHhcccCcceeE-------EEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDV-------LFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v-------~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|..+ +....+|+++|||||+|.+.++|.+||+ +|+..+.|+.|.|..+.
T Consensus 56 ~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 128 (143)
T 3egn_A 56 HVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 128 (143)
T ss_dssp TCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECC
T ss_pred CCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 47899999999999999764 2233589999999999999999999995 89999999999997765
No 334
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.3e-11 Score=83.77 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=70.5
Q ss_pred CCCcccEEEEcCCCCC-CCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCC-HHHHHHHHH-h--CCCccCCeE
Q 029263 103 SAVHTGILRLRGLPFS-AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMA-K--DRMTLGSRY 177 (196)
Q Consensus 103 ~~~~~~~l~v~nLp~~-~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~-~~~A~~Al~-~--~g~~l~gr~ 177 (196)
....+.+|+|.||++. +++++|+++|++||.+. .|.+..+.+ +|||.|.+ +.+|..|+. + ++..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~-~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIK-WIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEE-EEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEE-EEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4556789999999999 99999999999999765 677776554 59999999 789988885 4 588999999
Q ss_pred EEEEECChHHHHHHH
Q 029263 178 IELFPSSHEEMDEAL 192 (196)
Q Consensus 178 i~V~~~~~~~~~~~~ 192 (196)
+++.+.+.++-.++.
T Consensus 88 ~~~evL~GeeE~~yw 102 (121)
T 1owx_A 88 VTWEVLEGEVEKEAL 102 (121)
T ss_dssp EEEEECCHHHHHHHH
T ss_pred EEEEECCCHHHHHHH
Confidence 999999877666554
No 335
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=3.5e-12 Score=87.35 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=55.6
Q ss_pred CchHHHHHHHhcccCcceeE--EEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDV--LFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v--~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++ .+...+|+++|||||+|.+.++|.+||+ +++..++++.|.|..+.
T Consensus 36 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 36 RVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp TCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 46999999999999999553 1222389999999999999999999995 79999999999997766
No 336
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=8.5e-12 Score=84.63 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=54.0
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCC-----eeEEEEEcCh
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGR-----RYVEVFRSKR 68 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~-----~~i~v~~~~~ 68 (196)
..|+++|+++|+.||.|.++.+... |||||+|.+.++|++||+ +|+..+.+ +.|.|..+.+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 26 SGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp SCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 5789999999999999999866532 899999999999999995 89999999 9999987763
No 337
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.29 E-value=6.2e-12 Score=87.17 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=54.8
Q ss_pred chHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
.|+++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|| .+++..++|+.|.|..+.
T Consensus 49 ~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 49 MTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 6899999999999999998764 57899999999999999999 679999999999997766
No 338
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.8e-12 Score=85.83 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=56.4
Q ss_pred CchHHHHHHHhcccCc-ceeEEEe--c-CCCcccceEEEEeCCHHHHHHHHH-hc--ccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMD-IVDVLFV--H-KNNKFTGEAFCVLGYPLQVDFALQ-RN--RQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~-i~~v~~~--~-~~g~~~G~afV~F~~~~~a~~Al~-~~--~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||. |.++.+. + .+|+++|||||+|.+.++|.+||+ ++ +..++|+.|.|..+.
T Consensus 19 ~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~ 90 (109)
T 2dis_A 19 MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 90 (109)
T ss_dssp TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESC
T ss_pred cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcC
Confidence 4789999999999998 9998654 3 367999999999999999999995 65 588999999997765
No 339
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.29 E-value=1e-11 Score=82.66 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=53.3
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+ ++|||||+|.+.++|.+|++ +++..++|+.|.|..+.
T Consensus 34 ~~t~~~L~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 34 NVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCCHHHHHHHHGGGSCEEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred cCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 5799999999999999999876 27899999999999999995 89999999999997654
No 340
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=7.1e-12 Score=83.57 Aligned_cols=61 Identities=10% Similarity=0.007 Sum_probs=54.7
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+.. ++|||||+|.+.++|.+|+ .+++..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~~~~----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 26 DITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp TCCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCHHHHHHHHhhcCCeEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 468999999999999999987663 4789999999999999999 679999999999997766
No 341
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=6.1e-12 Score=85.85 Aligned_cols=61 Identities=10% Similarity=-0.061 Sum_probs=54.3
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+.. ++|||||+|.+.++|++|| .+|+..++++.|.|..+.
T Consensus 21 ~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 21 GTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999987653 6789999999999999999 589999999999997665
No 342
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=8.4e-12 Score=82.91 Aligned_cols=61 Identities=15% Similarity=0.031 Sum_probs=53.9
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccC--CeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMG--RRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~--~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+... +|||||+|.+.++|++|++ +|+..+. ++.|.|..+.
T Consensus 28 ~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 28 NTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 4689999999999999999876532 7899999999999999995 8999999 9999997765
No 343
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.28 E-value=1.1e-11 Score=80.87 Aligned_cols=60 Identities=15% Similarity=0.040 Sum_probs=54.0
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|++| +|.++.+. +++|||||+|.+.++|.+|++ +|+..++|+.|.|..+.
T Consensus 16 ~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 16 DSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp SCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 57899999999998 99988663 788999999999999999995 89999999999997655
No 344
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.27 E-value=4.4e-12 Score=84.91 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=53.9
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+. +++|||||+|.+.++|.+|+ .+++..++|+.|.|..+.
T Consensus 38 ~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 38 FATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp TCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred ccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999998765 56799999999999999999 579999999998885543
No 345
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.27 E-value=1.1e-11 Score=84.25 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=53.5
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+. +|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 42 ~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 42 DVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp TCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 46899999999999999998766 6899999999999999995 79999999999997665
No 346
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=79.83 Aligned_cols=60 Identities=17% Similarity=0.070 Sum_probs=52.9
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-h-cccccCCeeEEEEEc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-R-NRQNMGRRYVEVFRS 66 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~-~~~~l~~~~i~v~~~ 66 (196)
..|+++|+++|+.||.|.++.+.. ++|||||+|.+.++|.+|++ + ++..++|+.|.|..+
T Consensus 23 ~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 23 TITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp TSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 468999999999999999987663 47899999999999999996 6 899999999988653
No 347
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=3e-12 Score=87.53 Aligned_cols=61 Identities=8% Similarity=-0.089 Sum_probs=51.2
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-Hhccccc-----CCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNM-----GRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l-----~~~~i~v~~~~ 67 (196)
..|+++|+++|++||+|.+|.+.. .+|||||+|.+.++|++|+ .+|+..+ .++++.|..+.
T Consensus 38 ~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 38 GVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp TCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence 468999999999999999986542 3789999999999999999 5899877 57777775544
No 348
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=2.1e-11 Score=79.14 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=59.2
Q ss_pred cccEEEEcCCC----CCCCH----HHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeE
Q 029263 106 HTGILRLRGLP----FSAGK----DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 177 (196)
Q Consensus 106 ~~~~l~v~nLp----~~~t~----~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~ 177 (196)
+..+|+|.-+| .+.-+ .+|.+.|++||.+. .+++..+. +||+|.+.++|.+|+.+||..++||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi-~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVI-LIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEE-EEEECSSS-------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeE-EEEEecCC-------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 34577787766 23333 68999999999655 68887653 89999999999999999999999999
Q ss_pred EEEEECCh
Q 029263 178 IELFPSSH 185 (196)
Q Consensus 178 i~V~~~~~ 185 (196)
|+|.++++
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999975
No 349
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2.4e-11 Score=79.91 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=53.2
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+. ++||||+|.+.++|.+|+ .+|+..+.++.|.|..+.
T Consensus 21 ~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 21 TCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46999999999999999998765 349999999999999999 589999999999998776
No 350
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.4e-11 Score=83.59 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=54.4
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+... +|||||+|.+.++|.+|| .+++..++|+.|.|..+.
T Consensus 36 ~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 36 GLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp CCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 4689999999999999999876632 789999999999999999 679999999999997665
No 351
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.1e-11 Score=81.68 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=53.3
Q ss_pred CchHHHHHHHhcccCcceeE-EEec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDV-LFVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v-~~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|++|+ ++ ++.+ .+|+++|||||+|.+.++|.+||+ +++..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 26 DTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp TCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 468999999999863 44 3345 589999999999999999999995 89999999999997766
No 352
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.8e-12 Score=82.37 Aligned_cols=62 Identities=11% Similarity=0.084 Sum_probs=53.4
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|++...+|+ ||||+|.+.++|.+||++++..++|+.|.|..+.
T Consensus 19 ~~t~~~l~~~F~~~G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 19 GVDSAQLSEYFLAFGPVASVVMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCHHHHHHHGGGTSCEEEEEECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 4689999999999999999843334555 9999999999999999999999999999996544
No 353
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.4e-11 Score=81.79 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=53.1
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+. +|||||+|.+.++|.+||+ +++..+.|+.|.|..+.
T Consensus 22 ~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 22 NVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp CCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred cCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 57999999999999999998763 6899999999999999995 79999999999986654
No 354
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.89 E-value=6.6e-13 Score=91.26 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=58.1
Q ss_pred CchHHHHHHHhcccCccee--------EE-Eec-CCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcChH
Q 029263 3 LPQVQVLCTIHHQLMDIVD--------VL-FVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~--------v~-~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~~ 69 (196)
..|+++|+++|+.||.|.+ +. +.+ .+|+++|||||+|.+.++|.+||+ +|+..++++.|.|..+.+.
T Consensus 18 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 18 NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRR 95 (116)
Confidence 4689999999999999988 64 345 479999999999999999999995 8999999999999766543
No 355
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.24 E-value=1.1e-11 Score=84.34 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=53.6
Q ss_pred chHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
.|+++|+++|+.||.|.++.+ ++|||||+|.+.++|.+|| .+++..++++.|.|..+.
T Consensus 40 ~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 40 VKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 789999999999999999876 6799999999999999999 689999999999997765
No 356
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.24 E-value=1.5e-11 Score=89.17 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=54.7
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCC--eeEEEEEcCh
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGR--RYVEVFRSKR 68 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~--~~i~v~~~~~ 68 (196)
..|+++|+++|++||+|.+|.+... .++|||||+|.+.++|++|+ .+||..+.+ +.|.|..+..
T Consensus 57 ~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 57 PVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 4689999999999999999976543 35789999999999999999 589999955 8999977653
No 357
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.24 E-value=1.9e-11 Score=82.16 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=53.3
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+. +|||||+|.+.++|.+||+ +++..+.++.|.|..+.
T Consensus 22 ~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 22 TVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 46999999999999999998755 4699999999999999995 79999999999997776
No 358
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.8e-11 Score=81.31 Aligned_cols=62 Identities=13% Similarity=0.020 Sum_probs=53.2
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|. +.+. +++++|||||+|.+.++|.+|| .+|+..++|+.|.|..+.
T Consensus 30 ~~t~~~l~~~F~~~G~v~-~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 30 DARVSDLKRALRELGSVP-LRLT--WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp TCCHHHHHHHHHHTTCCC-SEEE--EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred cCcHHHHHHHHHhcCCEE-EEEE--cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 468999999999999986 3322 2478899999999999999999 679999999999997765
No 359
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.23 E-value=1.7e-11 Score=84.14 Aligned_cols=60 Identities=10% Similarity=0.017 Sum_probs=52.1
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCee-----EEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRY-----VEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~-----i~v~~~~ 67 (196)
..|++||+++|+.||.|.++.+... |||||+|.+.++|++||+ +|+..++++. |.|....
T Consensus 27 ~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 27 SGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp SCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 5689999999999999999876532 899999999999999995 8999999987 7776655
No 360
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=2.1e-11 Score=79.87 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=53.1
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+. +|||||+|.+.++|++||+ +++..++++.|.|..+.
T Consensus 20 ~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 20 ACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 46999999999999999998765 3499999999999999995 89999999999997766
No 361
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.3e-11 Score=81.31 Aligned_cols=60 Identities=13% Similarity=-0.022 Sum_probs=51.7
Q ss_pred CchHHHHHHHhcccCcce-eEEEecCCCcccceEEEEeCCHHHHHHHHH-hcc-cccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIV-DVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNR-QNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~-~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~-~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|+ .+.+. ++|||||+|.+.++|.+||+ +|+ ..++++.|.|..+.
T Consensus 19 ~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 19 AVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp TCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 468999999999999944 45542 57899999999999999994 899 89999999997766
No 362
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.21 E-value=1.6e-11 Score=88.10 Aligned_cols=62 Identities=16% Similarity=0.023 Sum_probs=54.9
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.+|.+... ++|||||+|.+.++|.+||+ +|+..++|+.|.|..+.
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 4689999999999999999876532 68999999999999999995 89999999999997665
No 363
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.21 E-value=3e-11 Score=79.12 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=49.1
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~ 69 (196)
..||++|+++|++||.|.++.+.. .++|||||+|.+.++|+++.. ....++++.|.|..+.+.
T Consensus 22 ~~te~~L~~~F~~~G~i~~v~i~~---~srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 22 DMTAEELQQFFCQYGEVVDVFIPK---PFRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNAEPK 84 (89)
T ss_dssp TCCHHHHHHHHTTTSCEEEEECCS---SCCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEECC--
T ss_pred CCCHHHHHHHHhccCCEEEEEEee---CCCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEcCCC
Confidence 469999999999999999987553 278999999999999995432 233456899999776643
No 364
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.20 E-value=4.7e-11 Score=83.43 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=53.3
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccce-EEEEeCCHHHHHHHH-HhcccccCC--eeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGE-AFCVLGYPLQVDFAL-QRNRQNMGR--RYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~-afV~F~~~~~a~~Al-~~~~~~l~~--~~i~v~~~~ 67 (196)
..|+++|+++|+.||+|.+|.+.+. ++|| |||+|.+.++|.+|+ .+||..+.+ +.|.|..+.
T Consensus 39 ~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 39 PVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp CCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred CCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 4699999999999999999976542 3577 999999999999999 689999977 788886665
No 365
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.9e-11 Score=83.66 Aligned_cols=60 Identities=10% Similarity=-0.038 Sum_probs=46.9
Q ss_pred CchHHHHHHHhcccCcceeEE-EecC-C---CcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEE
Q 029263 3 LPQVQVLCTIHHQLMDIVDVL-FVHK-N---NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 64 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~-~~~~-~---g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~ 64 (196)
..|+++|+++|+.||.|. +. +.+. + |+++|||||+|.+.++|++||+.. ..+.|+.+.+.
T Consensus 19 ~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 19 DIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp TCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 469999999999999999 54 3443 3 799999999999999999999643 22556655543
No 366
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.20 E-value=2.7e-11 Score=78.66 Aligned_cols=59 Identities=8% Similarity=-0.038 Sum_probs=51.3
Q ss_pred CchHHHHHHHhccc----C-------cceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEE
Q 029263 3 LPQVQVLCTIHHQL----M-------DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 65 (196)
Q Consensus 3 ~~te~dl~~~F~~~----g-------~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~ 65 (196)
..|+++|+++|+.| | .|.++.+.. ++|||||+|.+.++|.+|+.+|+..++|+.|.|..
T Consensus 17 ~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~----~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 17 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS----SSSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC----CCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 46899999999999 7 777776542 37899999999999999998899999999998853
No 367
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=5e-11 Score=82.77 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=52.1
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccce-EEEEeCCHHHHHHHH-HhcccccCC--eeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGE-AFCVLGYPLQVDFAL-QRNRQNMGR--RYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~-afV~F~~~~~a~~Al-~~~~~~l~~--~~i~v~~~~ 67 (196)
..|+++|+++|+.||+|.+|.+.+. .|| |||+|.+.++|..|+ .+||..+.+ +.|.|..+.
T Consensus 36 ~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 36 PITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp CCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4689999999999999999976543 286 999999999999999 589999976 588886554
No 368
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=6.8e-11 Score=78.73 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=52.3
Q ss_pred CchHHHHHHHhccc--CcceeEEEecCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQL--MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~--g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.| |.|.++.+. +|||||+|.+.++|.+||+ +|+..++++.|.|..+.
T Consensus 26 ~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 26 STSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp TCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46899999999999 888887643 5799999999999999995 89999999999997665
No 369
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.17 E-value=4e-11 Score=100.21 Aligned_cols=66 Identities=15% Similarity=0.043 Sum_probs=58.8
Q ss_pred CchHHHHHHHhcccCcceeEEE-ec-CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcCh
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKR 68 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~-~~-~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~ 68 (196)
..|+++|.++|+.||.|..|.| .+ .+|+++|||||+|.+.++|.+|| .+|+..|+|+.|.|..+..
T Consensus 113 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 113 DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 4689999999999999999854 45 48999999999999999999999 6799999999999976653
No 370
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=8e-11 Score=77.09 Aligned_cols=56 Identities=7% Similarity=-0.022 Sum_probs=48.1
Q ss_pred chHHH----HHHHhccc-CcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 4 PQVQV----LCTIHHQL-MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 4 ~te~d----l~~~F~~~-g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
.++++ |+++|+.| |+|++| +| |+|||+|.+.++|++|+ ++++..+.||+|.|..+.
T Consensus 21 ~~~~~lk~~L~~lF~~yGG~Vl~V-----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 21 KDGKSVSNRLRRLSDNCGGKVLSI-----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp SCHHHHHHHHHHHHHTTTCCEEEC-----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEE-----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 45555 66899999 499998 34 99999999999999999 589999999999996554
No 371
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=6.8e-11 Score=77.01 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=50.1
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
..|+++|+++|+.||.|.++.+... ++|||||+|.+.++|++|+.. ...+.++.|.|..+.
T Consensus 16 ~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 16 DMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 5799999999999999999876532 789999999999999876543 455688898886655
No 372
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=2.7e-10 Score=75.31 Aligned_cols=63 Identities=16% Similarity=-0.036 Sum_probs=53.0
Q ss_pred CchHHHHHHHhcccCcceeE-EEe-cCCCcccceEEEEeCCHHHHHHHHH-hcccccCCeeEEEEEcCh
Q 029263 3 LPQVQVLCTIHHQLMDIVDV-LFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 68 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v-~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~l~~~~i~v~~~~~ 68 (196)
..|+++|+++|+.||.|.++ .+. ++. .|.|||+|.+.++|.+||+ +|+..++|+.|.|..+.+
T Consensus 26 ~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 26 HLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 46899999999999999998 444 432 2349999999999999995 899999999999977663
No 373
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.07 E-value=2.5e-10 Score=87.81 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=53.3
Q ss_pred hHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-Hhccccc------------CCeeEEEEEcCh
Q 029263 5 QVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNM------------GRRYVEVFRSKR 68 (196)
Q Consensus 5 te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l------------~~~~i~v~~~~~ 68 (196)
||++|+++|+.||+|.+|.+.. ++|||||+|.+.++|+.|+ .++++.| .|+.|.|..+..
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred cHHHHHHHHHccCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 7999999999999999997663 5899999999999999999 5899999 899999977663
No 374
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=1.7e-10 Score=75.26 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=59.9
Q ss_pred cccEEEEcCCCCC-----CCH----HHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCe
Q 029263 106 HTGILRLRGLPFS-----AGK----DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 176 (196)
Q Consensus 106 ~~~~l~v~nLp~~-----~t~----~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr 176 (196)
+..+|+|.-++.. .-+ .+|.+.|.+||.+. .+++..+. +||+|.+.++|.+|+.+||..++||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi-lvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIV-LVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCS-EEEEETTE-------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEE-EEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4568999888743 222 57999999999655 68888763 9999999999999999999999999
Q ss_pred EEEEEECCh
Q 029263 177 YIELFPSSH 185 (196)
Q Consensus 177 ~i~V~~~~~ 185 (196)
.|+|.+.++
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999998764
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.01 E-value=9e-10 Score=83.85 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=66.7
Q ss_pred cEEEEcCCC-----CCCCHHHHHHHhhcCCCccceEEEEeCC-----CCCCceEEEEEeCCHHHHHHHHHh-CCCccCCe
Q 029263 108 GILRLRGLP-----FSAGKDDIMDFFKDFVLSEDSIHITMNS-----DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSR 176 (196)
Q Consensus 108 ~~l~v~nLp-----~~~t~~~l~~~F~~~g~~~~~v~l~~~~-----~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr 176 (196)
..+.+.|+- ..-.+++|.+.|++||.+. ++.++.+. +|.++|++||+|.+.++|.+|+.. ||..++||
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~-~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN-RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEE-EEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeE-EEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 345555552 3345689999999999876 78886443 558999999999999999999975 99999999
Q ss_pred EEEEEECChHHHHH
Q 029263 177 YIELFPSSHEEMDE 190 (196)
Q Consensus 177 ~i~V~~~~~~~~~~ 190 (196)
.|.|.++...+++.
T Consensus 204 ~i~~~~~~~~~f~~ 217 (222)
T 3dxb_A 204 KVVAEVYDQERFDN 217 (222)
T ss_dssp BCEEEECCHHHHHT
T ss_pred EEEEEEcCHHHhhh
Confidence 99999998877653
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.93 E-value=3.4e-09 Score=80.59 Aligned_cols=69 Identities=9% Similarity=0.038 Sum_probs=59.5
Q ss_pred CchHHHHHHHhcccCcceeEEEe-c-----CCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcChHHH
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFV-H-----KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQEY 71 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~-~-----~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~~~~~ 71 (196)
...+++|++.|++||+|.++.+. + .+|+++|++||+|.+.++|.+|+ .+||..++||.|.+.......+
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f 215 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERF 215 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHh
Confidence 34678999999999999998643 2 25589999999999999999999 5899999999999988876655
No 377
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.85 E-value=2.2e-09 Score=86.79 Aligned_cols=50 Identities=10% Similarity=-0.057 Sum_probs=43.9
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHH-Hhccccc
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNM 56 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l 56 (196)
..||++|+++|++||+|.+|.+.. ++|||||+|++.++|++|| .+||..+
T Consensus 31 ~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 31 GVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 469999999999999999886543 5799999999999999999 5898876
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=8e-09 Score=67.00 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=49.1
Q ss_pred HHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 7 QVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 7 ~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
.+|.+.|+.||+|+.+.+... .+||+|.+.++|.+||++|+..++||.|+|...+
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d------~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVED------KMWVTFLEGSSALNVLSLNGKELLNRTITIALKS 84 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSS------SEEEEESSHHHHHHGGGGTTCEETTEEEEEEECC
T ss_pred HHHHHHHHhCCCeEEEEEecC------CEEEEECChHHHHHHHhcCCeEeCCeEEEEEeCC
Confidence 679999999999999976532 3899999999999999999999999999997766
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=3.2e-08 Score=65.85 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=62.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcC-----CCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHH-HhCCCccCCeEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDF-----VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-AKDRMTLGSRYIE 179 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~-----g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al-~~~g~~l~gr~i~ 179 (196)
..++|-+.|||+++++..|+.+.+++ |... .|.|..|-.| |+|+|.+...|-+|. .+||..|.||.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~-KI~L~pDH~G-----Aivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIR-KILLVSDFNG-----AIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCS-EEEEETTTTE-----EEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCcccee-EEEEecCCCc-----eEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35789999999999999999999999 7443 4666655444 999999999886655 6799999999999
Q ss_pred EEECChHHHHHH
Q 029263 180 LFPSSHEEMDEA 191 (196)
Q Consensus 180 V~~~~~~~~~~~ 191 (196)
+ .+..|+...
T Consensus 94 ~--gTv~eL~~~ 103 (117)
T 2l9w_A 94 S--GTINDMKRY 103 (117)
T ss_dssp E--ECHHHHHHH
T ss_pred e--cCHHHHHhc
Confidence 7 455555544
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.7e-08 Score=65.81 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=48.4
Q ss_pred HHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 7 QVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 7 ~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
.+|.+.|+.||+|+.+.+.... +||+|.+.++|.+||++|+..++||.|+|...+
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence 5699999999999999765322 999999999999999999999999999997544
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=8.4e-06 Score=55.87 Aligned_cols=62 Identities=10% Similarity=-0.050 Sum_probs=49.6
Q ss_pred chHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCC-HHHHHHHHH-h--cccccCCeeEEEEEcChH
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGY-PLQVDFALQ-R--NRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~-~~~a~~Al~-~--~~~~l~~~~i~v~~~~~~ 69 (196)
.|+++|+++|+.||+|..|.+... .. +|||.|.+ .++|..|++ + .+..+.+..+.+....-+
T Consensus 31 ~sredLke~F~~~G~V~~Vd~~~g--~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~Ge 96 (121)
T 1owx_A 31 TCREDLHILFSNHGEIKWIDFVRG--AK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGE 96 (121)
T ss_dssp CCHHHHHHHTCSSCCEEEEECCTT--CS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHH
T ss_pred CCHHHHHHHHHhcCCEEEEEEecC--CC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCH
Confidence 789999999999999988865422 11 69999999 889999995 4 477888888888776644
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2.2e-05 Score=51.77 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=58.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhc---CC--CccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCCeEEEE
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKD---FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 180 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~---~g--~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~gr~i~V 180 (196)
...+|.|.|||+.+.++-|.-+|+. -| .+. +|.... +-|+|+|.+.+.|++.|......|+|..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~-~v~~~~-------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVL-SWQRLG-------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEE-EEEEET-------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceee-EEEEcC-------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 4578999999999999999999987 33 333 444431 4699999999999999988779999999999
Q ss_pred EECCh
Q 029263 181 FPSSH 185 (196)
Q Consensus 181 ~~~~~ 185 (196)
.+..+
T Consensus 79 ~P~~~ 83 (104)
T 2dhx_A 79 RPAPP 83 (104)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 88654
No 383
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.09 E-value=3.1e-05 Score=50.44 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=45.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~ 168 (196)
...+++ ++|.+..-.||.++|++||-+. |.++.|. -|||.|.+++.|..||+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~--I~WidDT------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ--ISWIDDT------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC--CEEEETT------EEEEECSCHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE--EEEEcCC------eEEEEecCHHHHHHHHHh
Confidence 345666 9999999999999999999655 8999763 599999999999999873
No 384
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=98.07 E-value=7.6e-06 Score=56.38 Aligned_cols=85 Identities=8% Similarity=0.217 Sum_probs=62.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC-------------CC-CCceEEEEEeCCHHHHHHHHHhCCCcc
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-------------DG-RPTGEAFVEFANAEDSKAAMAKDRMTL 173 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~-------------~g-~~~G~afV~F~~~~~A~~Al~~~g~~l 173 (196)
..|.|-+.|++.+. .+.+.|+.||.+.+.+...... .+ .....-.|+|.++.+|.+||..||..|
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 46889999776654 5667899999655433222100 00 123477999999999999999999999
Q ss_pred CCeEEEEEECChHHHHHHHH
Q 029263 174 GSRYIELFPSSHEEMDEALS 193 (196)
Q Consensus 174 ~gr~i~V~~~~~~~~~~~~~ 193 (196)
+|..|-|.+.++..++...+
T Consensus 87 ~G~mIGV~Py~~~~ve~l~~ 106 (132)
T 3p3d_A 87 NGVLLGVIPYTKDAVERLQK 106 (132)
T ss_dssp TTEECEEEECCHHHHHHHC-
T ss_pred CcEEEEEEECCHHHHHHHhc
Confidence 99999999999888777644
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=3.1e-05 Score=52.62 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=62.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccC-CeEEEEEEC
Q 029263 105 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG-SRYIELFPS 183 (196)
Q Consensus 105 ~~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~-gr~i~V~~~ 183 (196)
.....|.|.+.|+.. ...|...|+.||.+. .... ..+ ...-.|.|.++.+|++||.+||..|+ +-.|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv-~~~~---~~~--~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNIL-KHVM---SNT--GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEE-EEEE---CSS--SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEE-Eecc---CCC--CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 346789999999985 677889999999765 2222 222 34899999999999999999999998 588999998
Q ss_pred ChHHHHHHH
Q 029263 184 SHEEMDEAL 192 (196)
Q Consensus 184 ~~~~~~~~~ 192 (196)
+.......+
T Consensus 95 ~d~~vi~~~ 103 (119)
T 1wwh_A 95 IDKNVMENS 103 (119)
T ss_dssp CCHHHHC--
T ss_pred CCHHHHHHh
Confidence 755554443
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.94 E-value=3.1e-05 Score=52.61 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCC-eeEEEEEcChHHHHH
Q 029263 6 VQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGR-RYVEVFRSKRQEYYK 73 (196)
Q Consensus 6 e~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~-~~i~v~~~~~~~~~~ 73 (196)
-..|...|+.||+|+++.. .++. .+-.|.|.++.+|++||.+|+..+++ --|-|.++.......
T Consensus 37 ~~~VL~~F~~~G~Iv~~~~--~~~~--NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~d~~vi~ 101 (119)
T 1wwh_A 37 ASYILLQFAQYGNILKHVM--SNTG--NWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKNVME 101 (119)
T ss_dssp HHHHHHHHHTTSCEEEEEE--CSSS--SEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCCHHHHC
T ss_pred HHHHHHHHHhhCcEEEecc--CCCC--CeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECCCHHHHH
Confidence 4568899999999999864 2333 38999999999999999999999986 557888887555433
No 387
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.68 E-value=3.2e-05 Score=50.54 Aligned_cols=52 Identities=23% Similarity=0.361 Sum_probs=44.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~ 168 (196)
..++| ++|.+.--.||.++|++||-+. |.++.|. -|||.|.+++.|..||+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~--I~WidDT------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ--ISWIDDT------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE--EEEEETT------EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE--EEEEcCC------eEEEEecCHHHHHHHHHh
Confidence 35556 9999999999999999998554 8888763 499999999999999974
No 388
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.59 E-value=0.0001 Score=50.77 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=50.9
Q ss_pred HHHHHHHhcccCcceeEE-Eec-C-------------CC-cccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcChH
Q 029263 6 VQVLCTIHHQLMDIVDVL-FVH-K-------------NN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQ 69 (196)
Q Consensus 6 e~dl~~~F~~~g~i~~v~-~~~-~-------------~g-~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~~~ 69 (196)
...|.+.|++||.|++.. ..+ . .+ ....+-.|.|+++.+|.+||.+||+.++|.-|-|.++++.
T Consensus 20 ~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 20 ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECCHH
T ss_pred HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECCHH
Confidence 456889999999998732 111 0 00 1235789999999999999999999999998899999866
Q ss_pred HH
Q 029263 70 EY 71 (196)
Q Consensus 70 ~~ 71 (196)
.+
T Consensus 100 ~v 101 (132)
T 3p3d_A 100 AV 101 (132)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 389
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00045 Score=45.99 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=50.5
Q ss_pred CCchHHHHHHHhccc-----CcceeEEEecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 2 ELPQVQVLCTIHHQL-----MDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 2 ~~~te~dl~~~F~~~-----g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
+.-++..|+.+.+++ |.++.+++...- |-|+|+|.+..+|-+|. .++|..+.|+.|.+....
T Consensus 31 DtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv~ 98 (117)
T 2l9w_A 31 DKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTIN 98 (117)
T ss_dssp TTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECHH
T ss_pred CCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEEecCHH
Confidence 456788999999999 888888665322 24999999999999987 999999999998885443
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.00098 Score=44.02 Aligned_cols=72 Identities=8% Similarity=0.112 Sum_probs=56.1
Q ss_pred ccEEEEcCCCCCC-C----HHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 029263 107 TGILRLRGLPFSA-G----KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 180 (196)
Q Consensus 107 ~~~l~v~nLp~~~-t----~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V 180 (196)
..+|++.|||.++ + .+.++++|..|+... .....+.-. =..|.|.++++|.+|-.. |+..++|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~-tF~~lkSFR-----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDT-TFQYFKSFK-----RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSC-EEEEETTTT-----EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCc-ceeecCcce-----EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998754 2 257789999998544 344443222 378999999999999865 999999999999
Q ss_pred EECC
Q 029263 181 FPSS 184 (196)
Q Consensus 181 ~~~~ 184 (196)
..+.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 8875
No 391
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.18 E-value=0.0021 Score=42.32 Aligned_cols=59 Identities=5% Similarity=-0.032 Sum_probs=44.4
Q ss_pred CchHHHHHHHhcc----cCc-ceeEEEecCCCcccceEEEEeCCHHHHHHHHHhcccccCCeeEEEEEcC
Q 029263 3 LPQVQVLCTIHHQ----LMD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 3 ~~te~dl~~~F~~----~g~-i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~l~~~~i~v~~~~ 67 (196)
...++-|.=+|+. -|. |.++.. .+ +-|+|+|.+.+.|++.|+.....|.+-.+.|++..
T Consensus 19 ~~~~e~L~LYFEn~rrsGGG~V~~v~~-~~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 19 AVPDELLTLYFENRRRSGGGPVLSWQR-LG-----CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP 82 (104)
T ss_dssp TSCHHHHHHHHHCTTTTCCCCEEEEEE-ET-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC
T ss_pred CCChhHheEEEeCCCcCCCceeeEEEE-cC-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC
Confidence 3457788888865 243 344432 22 46999999999999999888888988999998865
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.94 E-value=0.0044 Score=40.02 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=47.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCC---CCCCceEEEEEeCCHHHHHHHHHh-CCCccC
Q 029263 109 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS---DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG 174 (196)
Q Consensus 109 ~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~---~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~ 174 (196)
.|.|++||++.|++++.+.+++..... ....+..+ .-..-.-|+|.|.+.+++..-... +|..+-
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d-~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHD-YFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEE-EEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccce-EEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 688999999999999999999876432 33333332 112345799999999888877765 887663
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.98 E-value=0.018 Score=37.48 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=33.7
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHh
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 51 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 51 (196)
.|--.||.++|+.|| -+.|...|.| -|||.|.+++.|..|+..
T Consensus 26 ewKt~DI~~lFs~fg-gv~I~WidDT-----sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 26 EWKTSDLYQLFSAFG-NIQISWIDDT-----SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp TCCHHHHHHHHTTTC-SCCCEEEETT-----EEEEECSCHHHHHHHHHH
T ss_pred hhhhHHHHHHhhccC-CEEEEEEcCC-----eEEEEecCHHHHHHHHHh
Confidence 355679999999988 4455444444 599999999999999964
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.57 E-value=0.0096 Score=49.76 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=43.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCC
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~g 175 (196)
.+.|+|. .|...++.+|.++|++||.+. ++.+-.+ .| -||+|+|.+.+++..++...+....+
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~-~~~~~~~-~g---~~~~vef~~~~~~~~~~~~~~~p~~~ 115 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPIN-NHFFYES-FG---LYAVVEFCQKESIGSLQNGTHTPXXX 115 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCC-CEEEECS-SS---EEEEEECC---CCHHHHSSCCCCCCB
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcc-eEEEEcc-CC---eEEEEEeCCHHHHHHHHhccCCCccc
Confidence 4689997 799999999999999999887 5555432 22 59999999999999887665444443
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.38 E-value=0.016 Score=37.79 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=44.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCC------CceEEEEEeCCHHHHHHHHHh-CCCcc
Q 029263 107 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR------PTGEAFVEFANAEDSKAAMAK-DRMTL 173 (196)
Q Consensus 107 ~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~------~~G~afV~F~~~~~A~~Al~~-~g~~l 173 (196)
+..|.|+.||+..|++++.+.++++-. +.+...-.|. .-.-|+|.|.+.++...-... +|..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~----~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA----HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS----EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc----cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 457999999999999998888877432 3332222222 224699999999998887766 87765
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.05 E-value=0.021 Score=37.20 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=33.9
Q ss_pred CchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHh
Q 029263 3 LPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 51 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 51 (196)
.|--.||.++|+.|| -+.|...|.| -|||.|.+++.|..||..
T Consensus 16 ewKt~Di~~lFs~fg-gv~I~WidDT-----sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 16 EWKTSDLYQLFSAFG-NIQISWIDDT-----SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp TCCHHHHHHHTTTSE-EEEEEEEETT-----EEEEEEEEECHHHHHHHH
T ss_pred hhhhHHHHHHHhccC-CEEEEEEcCC-----eEEEEecCHHHHHHHHHh
Confidence 355679999999987 4455445544 599999999999999964
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.71 E-value=0.017 Score=48.30 Aligned_cols=48 Identities=8% Similarity=-0.083 Sum_probs=35.4
Q ss_pred chHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHhccc
Q 029263 4 PQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 54 (196)
Q Consensus 4 ~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~ 54 (196)
.++++|.++|+.||.|.++..+...| -||.|+|++.+++..++.....
T Consensus 64 ~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~~ 111 (464)
T 3pq1_A 64 ISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTHT 111 (464)
T ss_dssp ---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCCC
T ss_pred CCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccCC
Confidence 46889999999999999998776566 4999999999999988855433
No 398
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.73 E-value=0.21 Score=42.26 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=43.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh
Q 029263 106 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 168 (196)
Q Consensus 106 ~~~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~ 168 (196)
....++|+ +|......+|.++|+.||.+. |+++.+ + .|||.|.+.+.|..++..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~--V~widd-t-----~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNIQ--ISWIDD-T-----SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCCE--EEECSS-S-----EEEEECSCHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCEE--EEEEcC-C-----eEEEEECCHHHHHHHHHH
Confidence 34566665 999999999999999999654 777744 2 599999999999988864
No 399
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.34 E-value=0.3 Score=32.06 Aligned_cols=56 Identities=7% Similarity=0.052 Sum_probs=45.7
Q ss_pred HHHHHHhcccCcceeEE-EecCCCcccceEEEEeCCHHHHHHHH-HhcccccCCeeEEEEEcC
Q 029263 7 QVLCTIHHQLMDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSK 67 (196)
Q Consensus 7 ~dl~~~F~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~~a~~Al-~~~~~~l~~~~i~v~~~~ 67 (196)
+.++++|..|..+..-. +..-. =.-|.|.+.++|.+|- ++++..+.|..++|+-..
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lkSFR-----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFKSFK-----RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEETTTT-----EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred HHHHHHHHhhCcCcceeecCcce-----EEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 67899999988887753 44332 2789999999999997 789999999999997665
No 400
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=86.06 E-value=3.2 Score=29.72 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=41.0
Q ss_pred cEEEEcCCCCC---------CCHHHHHHHh--hcCCCccceEEEEeCCCCCCceEEEEEeCCHH-HHHHHHH
Q 029263 108 GILRLRGLPFS---------AGKDDIMDFF--KDFVLSEDSIHITMNSDGRPTGEAFVEFANAE-DSKAAMA 167 (196)
Q Consensus 108 ~~l~v~nLp~~---------~t~~~l~~~F--~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~-~A~~Al~ 167 (196)
.++.|.|+|-. -...+|++.| ..|.... |+.+..+.| +.|+|+|.|.+.- --..|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k--v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR--VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE--EEEEECSSB-EEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce--eEecccCCC-CceeEEEEecCChHHHHHHHH
Confidence 57888899862 2236899977 8888765 777777776 8899999999833 2244443
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=82.38 E-value=2.5 Score=35.65 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=35.5
Q ss_pred CCchHHHHHHHhcccCcceeEEEecCCCcccceEEEEeCCHHHHHHHHHh
Q 029263 2 ELPQVQVLCTIHHQLMDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 51 (196)
Q Consensus 2 ~~~te~dl~~~F~~~g~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 51 (196)
..|...||.+.|+.|| -++|...|.+ .|||.|.+.+.|..++..
T Consensus 449 ~~~~~~~i~~~fs~fg-~v~V~widdt-----~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 449 KEWKTSDLYQLFSAFG-NIQISWIDDT-----SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp TTCCHHHHHHHGGGGC-CCEEEECSSS-----EEEEECSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcC-CEEEEEEcCC-----eEEEEECCHHHHHHHHHH
Confidence 3567789999999988 4566666655 699999999999999854
No 402
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=67.39 E-value=4.3 Score=26.43 Aligned_cols=44 Identities=7% Similarity=0.005 Sum_probs=30.2
Q ss_pred CchHHHHHHHhcccCcce-e-EE---Eec--CCCcccceEEEEeCCHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIV-D-VL---FVH--KNNKFTGEAFCVLGYPLQVDF 47 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~-~-v~---~~~--~~g~~~G~afV~F~~~~~a~~ 47 (196)
+|+..+|++-+++..++. + |. +.. ..|++.|||.| |+|.+.|.+
T Consensus 29 tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 29 TPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 578889999888743332 2 22 222 47889999976 888887766
No 403
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=67.17 E-value=7.5 Score=25.20 Aligned_cols=46 Identities=7% Similarity=-0.024 Sum_probs=30.8
Q ss_pred CchHHHHHHHhcccCcce-e-EE---Eec--CCCcccceEEEEeCCHHHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIV-D-VL---FVH--KNNKFTGEAFCVLGYPLQVDFAL 49 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~-~-v~---~~~--~~g~~~G~afV~F~~~~~a~~Al 49 (196)
+|+..+|++-++...++. + |. +.. ..|++.|||.| |+|.+.|.+--
T Consensus 29 tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 29 TPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp CCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 578889999888754442 2 22 222 47888999976 77777776643
No 404
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=65.92 E-value=5.5 Score=26.14 Aligned_cols=45 Identities=11% Similarity=0.020 Sum_probs=30.9
Q ss_pred CchHHHHHHHhcccCcce-e-EE---Eec--CCCcccceEEEEeCCHHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIV-D-VL---FVH--KNNKFTGEAFCVLGYPLQVDFA 48 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~-~-v~---~~~--~~g~~~G~afV~F~~~~~a~~A 48 (196)
+|+..||++-++...++. + |. +.. ..|++.|||.| |+|.+.|.+-
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 577889998887744442 2 22 233 37889999976 8888888763
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=64.29 E-value=7.9 Score=27.66 Aligned_cols=47 Identities=11% Similarity=-0.089 Sum_probs=32.3
Q ss_pred CchHHHHHHHh--cccCcceeEE-EecCCCcccceEEEEeCCHH-HHHHHHHh
Q 029263 3 LPQVQVLCTIH--HQLMDIVDVL-FVHKNNKFTGEAFCVLGYPL-QVDFALQR 51 (196)
Q Consensus 3 ~~te~dl~~~F--~~~g~i~~v~-~~~~~g~~~G~afV~F~~~~-~a~~Al~~ 51 (196)
+.+..+|++.| +.|. +.+|. +..+.| +.|+|.|.|.+-- ....|+..
T Consensus 32 G~s~~~l~~~~~~~~F~-p~kv~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 32 GESGSKLRDEYILRGFN-PTRVRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp CCCSHHHHHHHHHTTCC-CSEEEEEECSSB-EEEEEEEECCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCC-CceeEecccCCC-CceeEEEEecCChHHHHHHHHH
Confidence 34567899977 9954 55564 566666 7799999999844 34446544
No 406
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=58.88 E-value=19 Score=24.62 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=31.4
Q ss_pred CchHHHHHHHhcccCcce-e-EE---Eec--CCCcccceEEEEeCCHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIV-D-VL---FVH--KNNKFTGEAFCVLGYPLQVDF 47 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~-~-v~---~~~--~~g~~~G~afV~F~~~~~a~~ 47 (196)
+|+..||++-++....+. + |. +.. ..|.+.|||.| |+|.+.|.+
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 588999999998854443 2 22 222 36788899887 788888776
No 407
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=52.08 E-value=16 Score=25.36 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=31.1
Q ss_pred CchHHHHHHHhcccCcc-ee-EE---Eec--CCCcccceEEEEeCCHHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDI-VD-VL---FVH--KNNKFTGEAFCVLGYPLQVDFA 48 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i-~~-v~---~~~--~~g~~~G~afV~F~~~~~a~~A 48 (196)
+|+..||++-++....+ .+ |. +.. ..|.+.|||.| |+|.+.|.+-
T Consensus 32 TpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 57888999998874333 23 32 222 36789999988 7888887763
No 408
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=51.37 E-value=8.2 Score=24.88 Aligned_cols=44 Identities=7% Similarity=0.086 Sum_probs=27.8
Q ss_pred CchHHHHHHHhcccCcce-eEEEe----c--CCCcccceEEEEeCCHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDIV-DVLFV----H--KNNKFTGEAFCVLGYPLQVDF 47 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i~-~v~~~----~--~~g~~~G~afV~F~~~~~a~~ 47 (196)
+|+..||++-++...++. ++++. . ..|++.|||.| |+|.+.|.+
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 578888888887744442 22222 2 36778888876 666665554
No 409
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=37.85 E-value=30 Score=27.64 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=34.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHhCCCccCC
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 175 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~~g~~l~g 175 (196)
....|.||||+++..-|.+++....... .+. ..| -...|-+-..|-|++-+...|....|
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~~~~~~-~l~----~~~---~~~m~lmvQkEvA~Rl~A~PGsk~yg 202 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSCIGNKN-WLY----RFG---KVKMLLWMPSTTARKLLARPGMHSRS 202 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHHHTC-GGG----GGS---EEEEEEEEEHHHHHHHHCCTTSTTCC
T ss_pred ceEEEEECCCchHHHHHHHHHHhccccc-ccc----ccC---cceEEEEeEHHHHHHhcCCCCCcccc
Confidence 3578999999999999999987421000 000 000 01233344577888876665555444
No 410
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=28.31 E-value=1.1e+02 Score=18.96 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=22.6
Q ss_pred cceeEEEecCCCcccceEEEEeCCHHHHHHHHH
Q 029263 18 DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ 50 (196)
Q Consensus 18 ~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~ 50 (196)
+|.++++.. ..+||-||++...++...+|+
T Consensus 39 ~i~~v~vP~---~fPGYVfVe~~~~~~~~~~I~ 68 (92)
T 3lpe_A 39 DVYSILASE---SLKGYVLVEAETKGDVEELIK 68 (92)
T ss_dssp CEEEEEECT---TSTTEEEEEESSHHHHHHHHT
T ss_pred cEEEEEEec---ccCCEEEEEEecchhHHHHHH
Confidence 344555443 378999999999998888884
No 411
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=27.87 E-value=48 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhc
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKD 130 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~ 130 (196)
..+.|.||||.++..-|..++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH
T ss_pred ccEEEecCcccccHHHHHHHhcC
Confidence 45789999999999999999987
No 412
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=27.16 E-value=1.1e+02 Score=19.31 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.9
Q ss_pred ceEEEEeCCHHHHHHHHHh
Q 029263 33 GEAFCVLGYPLQVDFALQR 51 (196)
Q Consensus 33 G~afV~F~~~~~a~~Al~~ 51 (196)
|.|.|.|.+.++.+.||+.
T Consensus 47 gqamirfqnsdeqrlaiqk 65 (129)
T 4eyt_A 47 GQAMIRFQNSDEQRLAIQK 65 (129)
T ss_dssp SCEEEEESSHHHHHHHHHH
T ss_pred CeeEEEecCChHHHHHHHH
Confidence 6799999999999999953
No 413
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.03 E-value=20 Score=24.58 Aligned_cols=44 Identities=14% Similarity=0.010 Sum_probs=29.5
Q ss_pred CchHHHHHHHhcccCcc-e-eEE----Eec--CCCcccceEEEEeCCHHHHHH
Q 029263 3 LPQVQVLCTIHHQLMDI-V-DVL----FVH--KNNKFTGEAFCVLGYPLQVDF 47 (196)
Q Consensus 3 ~~te~dl~~~F~~~g~i-~-~v~----~~~--~~g~~~G~afV~F~~~~~a~~ 47 (196)
+|+..||++-++....+ . +++ +.. ..|.+.|||.| |+|.+.|.+
T Consensus 39 Tpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~I-Yds~d~aKk 90 (138)
T 3iz6_U 39 NVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLI-YDNLDAAKK 90 (138)
T ss_dssp CCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCC-SSCHHHHHS
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 57889999999875554 2 322 222 36789999977 677765554
No 414
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=22.74 E-value=33 Score=26.23 Aligned_cols=23 Identities=9% Similarity=0.254 Sum_probs=20.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhc
Q 029263 108 GILRLRGLPFSAGKDDIMDFFKD 130 (196)
Q Consensus 108 ~~l~v~nLp~~~t~~~l~~~F~~ 130 (196)
....|.||||.++..-|..++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~ 137 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSF 137 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGG
T ss_pred ceEEEEccCccccHHHHHHHHhc
Confidence 35789999999999999999975
No 415
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=21.76 E-value=1.4e+02 Score=19.22 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=23.9
Q ss_pred cceeEEEecCCCcccceEEEEeCCHHHHHHHHHh
Q 029263 18 DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 51 (196)
Q Consensus 18 ~i~~v~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 51 (196)
.|.+++..+ .-+||-|||=.++.++..|++-
T Consensus 40 ~I~Si~~~~---~lkGyIyVEA~~~~~V~~ai~g 70 (106)
T 3h7h_B 40 QIKSVVAPE---HVKGYIYVEAYKQTHVKQAIEG 70 (106)
T ss_dssp CCCEEEECT---TCCSEEEEEESSHHHHHHHHTT
T ss_pred ceEEEEecC---CCceEEEEEeCCHHHHHHHHhc
Confidence 455555443 2589999999999999999954
No 416
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=20.88 E-value=1.5e+02 Score=18.04 Aligned_cols=50 Identities=16% Similarity=0.375 Sum_probs=33.7
Q ss_pred CCHHHHHHHhhcCCCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 029263 119 AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 180 (196)
Q Consensus 119 ~t~~~l~~~F~~~g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V 180 (196)
-|+++|+.+++.|.--.++|.+ +|-..+.++..+|..+ ....++-|.-.|
T Consensus 33 ktedelkkyleefrkesqnikv------------lilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIKV------------LILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEEE------------EEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHHHHHhhccCeEE------------EEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 5899999999998744445553 3445567777777766 666666555444
No 417
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=20.80 E-value=73 Score=18.47 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=17.6
Q ss_pred EEEEeCCCCCCceEEEEEeCC
Q 029263 138 IHITMNSDGRPTGEAFVEFAN 158 (196)
Q Consensus 138 v~l~~~~~g~~~G~afV~F~~ 158 (196)
.+++.++.....|++.|.|.+
T Consensus 22 arlllnrRps~~G~~wiKyED 42 (62)
T 1igq_A 22 ARLILNRRPPAEGYAWLKYED 42 (62)
T ss_dssp EEECTTBCCSSTTEEEEEETT
T ss_pred hhhhhccCCCcCceEEEEEec
Confidence 677777777889999999987
No 418
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=20.40 E-value=1.4e+02 Score=17.34 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHhhcC-CCccceEEEEeCCCCCCceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEECC
Q 029263 117 FSAGKDDIMDFFKDF-VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 184 (196)
Q Consensus 117 ~~~t~~~l~~~F~~~-g~~~~~v~l~~~~~g~~~G~afV~F~~~~~A~~Al~~-~g~~l~gr~i~V~~~~ 184 (196)
..++..+|..++..- |+....|--+.-.. .+.||+-.. ..|..++.. ++..+.|+.+.|..+.
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 456777788777654 44443443222111 278998865 456667754 8889999999998764
Done!