BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029265
         (196 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P58069|RASA2_MOUSE Ras GTPase-activating protein 2 OS=Mus musculus GN=Rasa2 PE=1 SV=1
          Length = 848

 Score = 32.7 bits (73), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 47  HPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRA 106
            PV + A  I      +C D +DA  PL + L H+   V  +  +  L   D   A +  
Sbjct: 340 QPVSASAAYI---LGEICQDQKDAVLPLVRLLLHHNKLVPFITAVAELDLKDTPDANA-- 394

Query: 107 LHIVNRTNSSATFCLLEWF 125
              + R NS AT CL E  
Sbjct: 395 ---IFRGNSLATQCLTEMM 410


>sp|Q63713|RASA2_RAT Ras GTPase-activating protein 2 OS=Rattus norvegicus GN=Rasa2 PE=2
           SV=1
          Length = 847

 Score = 32.7 bits (73), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 47  HPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRA 106
            PV + A  I      +C D +DA  PL + L H+   V  +  +  L   D   A +  
Sbjct: 339 QPVSASAAYI---LGEICRDQKDAVLPLVRLLLHHNKLVPFITAVADLDLKDTQDANA-- 393

Query: 107 LHIVNRTNSSATFCLLEWF 125
              + R NS AT CL E  
Sbjct: 394 ---IFRGNSLATQCLTEMM 409


>sp|Q7S2A9|TOF1_NEUCR Topoisomerase 1-associated factor 1 OS=Neurospora crassa (strain
           ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
           987) GN=tof-1 PE=3 SV=1
          Length = 1235

 Score = 32.0 bits (71), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 93  PLPYHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKE---- 148
           PL  H        ALH +N+ + S  F L+ WF + +     A       T+   E    
Sbjct: 381 PLFLHVRQSIDREALHALNQ-HKSQFFYLVAWFLEAERMRRKAKRDESKSTSAAGEEVNS 439

Query: 149 ---IVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKVTQKFFS 190
              +     + +  S + AL+  +SD+   LLT V    TQ F +
Sbjct: 440 FNLVAAVLQQEMFASMNRALDRSYSDKDWQLLTSVMRCYTQIFLT 484


>sp|Q80V62|FACD2_MOUSE Fanconi anemia group D2 protein homolog OS=Mus musculus GN=Fancd2
           PE=1 SV=2
          Length = 1450

 Score = 30.8 bits (68), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 57  EAFFDPVCPDSRDAWP-PLKQ--ALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRT 113
           +AF    C      +P P+K    L+ Y     +V++LLPL Y + A   SRA    +  
Sbjct: 660 DAFVVDFCAAPEGDFPFPVKALYGLEEYSTQDGIVINLLPLFYQECAKDASRATSQESSQ 719

Query: 114 NSSATFCLLEWF 125
            S ++ CL   F
Sbjct: 720 RSMSSLCLASHF 731


>sp|Q52L45|ILEU_XENLA Leukocyte elastase inhibitor OS=Xenopus laevis GN=serpinb1 PE=2
           SV=1
          Length = 377

 Score = 30.0 bits (66), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 102 ATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVV----KEIVKFAAEGI 157
            ++ AL++ NR     TF  L  F    +K Y+A    +   + +    KEI K+ +E  
Sbjct: 82  VSTYALNLANRLFGEKTFNFLPNFLSSVKKQYSADLGTVDFISALEDARKEINKWVSEQT 141

Query: 158 GNSYSSALESGFSDRSTDLL 177
                  L +G  DRST L+
Sbjct: 142 KGKIPEVLSTGTVDRSTKLV 161


>sp|Q5P7H3|ARLY_AROAE Argininosuccinate lyase OS=Aromatoleum aromaticum (strain EbN1)
           GN=argH PE=3 SV=1
          Length = 465

 Score = 30.0 bits (66), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 28/67 (41%)

Query: 25  FNSCSKSQSTPPAKYDGFFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH 84
           F  C K  +  P         ++P+D + +  E  FD VC +S DA      A++     
Sbjct: 191 FTDCRKRVNRLPLGAAALAGTSYPIDREFVARELGFDEVCHNSLDAVSDRDFAIEFCAAS 250

Query: 85  VSLVVHL 91
             L+ HL
Sbjct: 251 ALLMTHL 257


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.133    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,497,599
Number of Sequences: 539616
Number of extensions: 2625511
Number of successful extensions: 5038
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5036
Number of HSP's gapped (non-prelim): 7
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)