Query 029265
Match_columns 196
No_of_seqs 128 out of 1232
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03023 DsbA_Com1_like DsbA fa 99.9 1.8E-26 3.9E-31 173.5 13.4 131 50-196 3-133 (154)
2 PF13462 Thioredoxin_4: Thiore 99.9 7.2E-25 1.6E-29 166.7 11.1 137 39-196 2-140 (162)
3 cd03019 DsbA_DsbA DsbA family, 99.9 1.3E-22 2.8E-27 156.7 11.3 134 51-196 14-147 (178)
4 PRK10954 periplasmic protein d 99.8 4.6E-20 1E-24 146.8 13.4 130 52-196 37-171 (207)
5 cd03025 DsbA_FrnE_like DsbA fa 99.8 1.6E-18 3.5E-23 135.6 12.7 134 54-196 1-173 (193)
6 COG1651 DsbG Protein-disulfide 99.7 1.7E-17 3.6E-22 134.8 11.4 142 41-196 76-219 (244)
7 COG2761 FrnE Predicted dithiol 99.7 7.9E-17 1.7E-21 127.9 14.0 137 50-196 2-188 (225)
8 cd03024 DsbA_FrnE DsbA family, 99.7 3.5E-17 7.6E-22 128.8 10.8 130 56-196 1-179 (201)
9 PF01323 DSBA: DSBA-like thior 99.7 5.2E-17 1.1E-21 126.8 10.6 130 55-196 1-171 (193)
10 PRK11657 dsbG disulfide isomer 99.7 2.6E-16 5.6E-21 128.6 10.6 116 40-196 108-223 (251)
11 PF13743 Thioredoxin_5: Thiore 99.6 2.4E-15 5.3E-20 116.8 11.0 130 58-196 2-151 (176)
12 cd03022 DsbA_HCCA_Iso DsbA fam 99.6 4.9E-15 1.1E-19 115.6 11.6 129 56-196 1-171 (192)
13 cd02972 DsbA_family DsbA famil 99.6 3.4E-14 7.3E-19 98.0 9.1 68 56-125 1-70 (98)
14 cd03020 DsbA_DsbC_DsbG DsbA fa 99.5 1.4E-13 3E-18 108.6 9.4 65 39-110 67-131 (197)
15 PRK10877 protein disulfide iso 99.4 3.7E-13 8E-18 108.9 8.7 55 41-101 99-154 (232)
16 cd03021 DsbA_GSTK DsbA family, 99.3 2.2E-11 4.8E-16 96.9 12.2 132 55-196 2-183 (209)
17 COG3531 Predicted protein-disu 99.2 5.1E-10 1.1E-14 86.7 11.1 132 54-196 2-178 (212)
18 COG3917 NahD 2-hydroxychromene 99.1 3.8E-09 8.1E-14 80.7 13.0 135 52-196 6-180 (203)
19 PF13098 Thioredoxin_2: Thiore 97.5 7.9E-05 1.7E-09 52.8 3.2 25 52-76 5-29 (112)
20 TIGR00411 redox_disulf_1 small 96.9 0.0018 3.9E-08 42.9 4.6 39 54-92 1-39 (82)
21 cd03026 AhpF_NTD_C TRX-GRX-lik 96.9 0.0021 4.6E-08 44.2 4.7 41 51-92 11-51 (89)
22 PF13905 Thioredoxin_8: Thiore 96.9 0.0029 6.2E-08 43.3 5.4 41 52-92 1-43 (95)
23 cd03003 PDI_a_ERdj5_N PDIa fam 96.6 0.0056 1.2E-07 42.4 5.4 40 52-91 18-57 (101)
24 cd02965 HyaE HyaE family; HyaE 96.6 0.0054 1.2E-07 44.0 5.1 41 51-91 27-68 (111)
25 cd03004 PDI_a_ERdj5_C PDIa fam 96.4 0.0085 1.8E-07 41.7 5.4 40 52-91 19-58 (104)
26 cd02949 TRX_NTR TRX domain, no 96.4 0.0096 2.1E-07 41.1 5.5 41 52-92 13-53 (97)
27 cd02973 TRX_GRX_like Thioredox 96.4 0.0071 1.5E-07 38.6 4.4 37 54-91 1-37 (67)
28 PF00085 Thioredoxin: Thioredo 96.4 0.0092 2E-07 40.9 5.2 41 52-92 17-57 (103)
29 PRK09381 trxA thioredoxin; Pro 96.3 0.011 2.3E-07 41.6 5.4 41 52-92 21-61 (109)
30 TIGR01295 PedC_BrcD bacterioci 96.3 0.0074 1.6E-07 43.9 4.5 39 52-92 23-61 (122)
31 cd02950 TxlA TRX-like protein 96.2 0.012 2.6E-07 43.9 5.4 41 52-92 20-60 (142)
32 cd02962 TMX2 TMX2 family; comp 96.2 0.022 4.7E-07 43.2 6.7 40 52-91 47-87 (152)
33 cd03002 PDI_a_MPD1_like PDI fa 96.1 0.015 3.2E-07 40.6 5.3 40 52-91 18-57 (109)
34 TIGR00412 redox_disulf_2 small 96.0 0.011 2.4E-07 39.2 4.0 36 55-91 2-37 (76)
35 PRK03147 thiol-disulfide oxido 96.0 0.087 1.9E-06 39.9 9.5 41 51-91 60-101 (173)
36 cd02982 PDI_b'_family Protein 96.0 0.015 3.3E-07 40.1 4.7 39 53-91 13-51 (103)
37 cd02954 DIM1 Dim1 family; Dim1 96.0 0.022 4.9E-07 41.0 5.6 41 52-92 14-54 (114)
38 cd02967 mauD Methylamine utili 95.9 0.016 3.4E-07 40.9 4.6 38 52-89 21-58 (114)
39 cd03006 PDI_a_EFP1_N PDIa fami 95.8 0.026 5.7E-07 40.5 5.5 41 51-91 28-68 (113)
40 TIGR01126 pdi_dom protein disu 95.8 0.026 5.6E-07 38.6 5.2 40 52-91 13-54 (102)
41 cd03001 PDI_a_P5 PDIa family, 95.8 0.026 5.6E-07 38.8 5.3 40 52-91 18-57 (103)
42 cd02956 ybbN ybbN protein fami 95.8 0.031 6.6E-07 38.2 5.6 40 52-91 12-51 (96)
43 TIGR01068 thioredoxin thioredo 95.7 0.03 6.5E-07 38.0 5.3 41 52-92 14-54 (101)
44 PTZ00443 Thioredoxin domain-co 95.6 0.069 1.5E-06 43.1 7.7 38 52-89 52-89 (224)
45 cd02961 PDI_a_family Protein D 95.6 0.036 7.8E-07 37.3 5.2 40 52-91 15-56 (101)
46 cd02952 TRP14_like Human TRX-r 95.5 0.034 7.3E-07 40.4 5.1 40 53-92 22-68 (119)
47 cd02995 PDI_a_PDI_a'_C PDIa fa 95.4 0.047 1E-06 37.5 5.4 40 52-91 18-59 (104)
48 cd02989 Phd_like_TxnDC9 Phosdu 95.4 0.034 7.3E-07 39.8 4.8 39 52-91 22-60 (113)
49 cd02975 PfPDO_like_N Pyrococcu 95.3 0.04 8.6E-07 39.4 5.0 40 52-92 21-61 (113)
50 cd02993 PDI_a_APS_reductase PD 95.3 0.047 1E-06 38.5 5.3 40 52-91 21-61 (109)
51 cd02985 TRX_CDSP32 TRX family, 95.2 0.051 1.1E-06 38.0 5.1 39 52-91 15-53 (103)
52 cd02999 PDI_a_ERp44_like PDIa 95.2 0.034 7.3E-07 38.8 4.1 36 52-88 18-53 (100)
53 cd02957 Phd_like Phosducin (Ph 95.2 0.048 1E-06 38.7 4.9 37 52-89 24-60 (113)
54 cd02948 TRX_NDPK TRX domain, T 95.1 0.066 1.4E-06 37.3 5.5 40 52-91 17-57 (102)
55 PHA02278 thioredoxin-like prot 94.9 0.061 1.3E-06 37.9 4.9 41 52-92 14-54 (103)
56 PF06053 DUF929: Domain of unk 94.9 0.12 2.5E-06 42.3 7.0 42 49-91 55-96 (249)
57 PRK11200 grxA glutaredoxin 1; 94.9 0.035 7.6E-07 37.4 3.4 37 55-92 2-38 (85)
58 TIGR02187 GlrX_arch Glutaredox 94.9 0.048 1E-06 43.4 4.8 38 52-90 19-59 (215)
59 cd02963 TRX_DnaJ TRX domain, D 94.8 0.056 1.2E-06 38.3 4.5 38 52-89 24-62 (111)
60 cd02997 PDI_a_PDIR PDIa family 94.7 0.088 1.9E-06 36.1 5.2 39 52-90 17-57 (104)
61 cd02998 PDI_a_ERp38 PDIa famil 94.6 0.11 2.4E-06 35.6 5.5 40 52-91 18-59 (105)
62 cd02996 PDI_a_ERp44 PDIa famil 94.6 0.1 2.3E-06 36.4 5.4 30 52-81 18-47 (108)
63 PTZ00102 disulphide isomerase; 94.6 0.21 4.5E-06 44.1 8.5 39 52-90 49-90 (477)
64 cd02947 TRX_family TRX family; 94.5 0.098 2.1E-06 34.3 5.0 38 53-91 11-48 (93)
65 PRK14018 trifunctional thiored 94.5 0.31 6.7E-06 44.1 9.3 42 51-92 55-97 (521)
66 cd03005 PDI_a_ERp46 PDIa famil 94.5 0.088 1.9E-06 36.0 4.8 37 55-91 19-58 (102)
67 cd02953 DsbDgamma DsbD gamma f 94.4 0.082 1.8E-06 36.7 4.5 40 52-91 11-53 (104)
68 PTZ00051 thioredoxin; Provisio 94.4 0.12 2.5E-06 35.3 5.1 39 52-91 18-56 (98)
69 cd03000 PDI_a_TMX3 PDIa family 94.3 0.13 2.8E-06 35.7 5.3 31 52-82 15-45 (104)
70 PRK10996 thioredoxin 2; Provis 94.3 0.12 2.7E-06 38.2 5.4 40 52-91 52-91 (139)
71 cd02951 SoxW SoxW family; SoxW 94.2 0.082 1.8E-06 38.0 4.2 38 53-90 15-55 (125)
72 PF03227 GILT: Gamma interfero 94.1 0.086 1.9E-06 37.5 4.2 40 54-93 1-43 (108)
73 TIGR02187 GlrX_arch Glutaredox 94.1 0.092 2E-06 41.8 4.8 40 51-91 132-171 (215)
74 PRK15412 thiol:disulfide inter 94.1 0.65 1.4E-05 35.9 9.4 38 51-91 67-104 (185)
75 cd02984 TRX_PICOT TRX domain, 94.1 0.15 3.2E-06 34.6 5.2 39 52-90 14-52 (97)
76 COG3118 Thioredoxin domain-con 94.0 0.095 2.1E-06 43.8 4.7 41 51-91 42-82 (304)
77 cd02966 TlpA_like_family TlpA- 93.9 0.16 3.5E-06 34.7 5.2 41 52-92 19-60 (116)
78 cd03012 TlpA_like_DipZ_like Tl 93.6 0.37 8.1E-06 34.6 6.9 40 52-91 23-63 (126)
79 TIGR02738 TrbB type-F conjugat 93.6 0.4 8.6E-06 36.3 7.2 31 52-82 50-80 (153)
80 cd01659 TRX_superfamily Thiore 93.6 0.13 2.8E-06 30.6 3.8 35 56-91 1-35 (69)
81 PLN00410 U5 snRNP protein, DIM 93.3 0.25 5.5E-06 37.0 5.6 40 52-91 23-62 (142)
82 PRK13728 conjugal transfer pro 93.2 0.21 4.5E-06 39.0 5.1 27 56-82 73-99 (181)
83 cd03009 TryX_like_TryX_NRX Try 92.9 0.24 5.2E-06 35.8 4.9 40 52-91 18-60 (131)
84 cd02987 Phd_like_Phd Phosducin 92.8 0.29 6.2E-06 37.9 5.5 38 53-91 84-121 (175)
85 KOG0907 Thioredoxin [Posttrans 92.8 0.26 5.6E-06 35.0 4.7 39 52-91 21-59 (106)
86 cd02964 TryX_like_family Trypa 92.7 0.27 5.9E-06 35.7 5.0 40 52-91 17-59 (132)
87 PF08534 Redoxin: Redoxin; In 92.7 0.22 4.8E-06 36.6 4.6 40 52-91 28-69 (146)
88 PF13192 Thioredoxin_3: Thiore 92.5 0.21 4.7E-06 32.8 3.8 34 55-91 2-35 (76)
89 PF00578 AhpC-TSA: AhpC/TSA fa 92.4 0.3 6.5E-06 34.5 4.8 40 52-91 25-66 (124)
90 KOG3160 Gamma-interferon induc 92.4 0.22 4.8E-06 40.0 4.4 41 52-92 39-81 (220)
91 cd02969 PRX_like1 Peroxiredoxi 92.3 0.23 5.1E-06 37.7 4.4 40 52-91 25-65 (171)
92 cd02994 PDI_a_TMX PDIa family, 92.3 0.32 7E-06 33.3 4.6 36 55-90 19-55 (101)
93 COG0526 TrxA Thiol-disulfide i 92.2 0.4 8.6E-06 32.3 5.1 42 52-93 32-73 (127)
94 PF13728 TraF: F plasmid trans 92.1 0.24 5.1E-06 39.7 4.3 37 52-88 120-156 (215)
95 KOG3425 Uncharacterized conser 91.9 0.21 4.5E-06 36.2 3.3 29 63-91 44-72 (128)
96 cd02992 PDI_a_QSOX PDIa family 91.8 0.46 9.9E-06 33.8 5.1 38 52-89 19-59 (114)
97 TIGR00424 APS_reduc 5'-adenyly 91.8 0.34 7.4E-06 43.2 5.2 41 51-91 370-411 (463)
98 cd02968 SCO SCO (an acronym fo 91.7 0.33 7.1E-06 35.3 4.4 41 52-92 22-67 (142)
99 cd02986 DLP Dim1 family, Dim1- 91.7 0.58 1.3E-05 33.7 5.5 41 51-91 13-53 (114)
100 cd03010 TlpA_like_DsbE TlpA-li 91.5 0.44 9.5E-06 34.1 4.8 37 52-90 25-61 (127)
101 COG2143 Thioredoxin-related pr 90.6 1 2.3E-05 34.3 6.1 41 50-90 40-83 (182)
102 cd02988 Phd_like_VIAF Phosduci 90.4 0.52 1.1E-05 37.0 4.6 39 52-91 102-140 (192)
103 TIGR02183 GRXA Glutaredoxin, G 90.3 0.31 6.7E-06 32.9 2.8 35 56-91 2-36 (86)
104 KOG0190 Protein disulfide isom 90.3 0.34 7.3E-06 43.4 3.7 34 51-84 383-416 (493)
105 TIGR02661 MauD methylamine deh 90.0 0.65 1.4E-05 36.1 4.8 38 51-90 73-110 (189)
106 PF06110 DUF953: Eukaryotic pr 89.7 0.49 1.1E-05 34.3 3.6 30 62-91 36-65 (119)
107 TIGR02740 TraF-like TraF-like 89.6 0.58 1.3E-05 38.8 4.5 37 52-90 166-202 (271)
108 cd00340 GSH_Peroxidase Glutath 89.5 0.64 1.4E-05 34.7 4.3 38 52-90 22-60 (152)
109 TIGR01130 ER_PDI_fam protein d 89.4 0.75 1.6E-05 40.2 5.4 42 51-92 363-407 (462)
110 PRK13703 conjugal pilus assemb 89.4 0.51 1.1E-05 38.7 3.9 31 52-82 143-173 (248)
111 PLN02412 probable glutathione 89.4 0.52 1.1E-05 35.9 3.8 40 52-91 29-69 (167)
112 TIGR02200 GlrX_actino Glutared 89.2 0.28 6.1E-06 31.6 1.9 22 55-76 1-22 (77)
113 PLN02309 5'-adenylylsulfate re 89.2 0.85 1.9E-05 40.7 5.5 40 51-90 364-404 (457)
114 cd02959 ERp19 Endoplasmic reti 89.2 0.67 1.4E-05 33.2 4.0 40 52-91 19-58 (117)
115 PF00462 Glutaredoxin: Glutare 88.8 0.42 9.1E-06 29.6 2.4 31 56-92 1-31 (60)
116 TIGR02739 TraF type-F conjugat 88.4 0.65 1.4E-05 38.2 4.0 31 52-82 150-180 (256)
117 TIGR02180 GRX_euk Glutaredoxin 88.1 0.31 6.8E-06 32.0 1.6 22 56-77 1-22 (84)
118 PHA03075 glutaredoxin-like pro 87.9 1 2.2E-05 32.4 4.1 66 53-130 2-67 (123)
119 cd03027 GRX_DEP Glutaredoxin ( 87.8 0.52 1.1E-05 30.5 2.5 32 55-92 2-33 (73)
120 PTZ00102 disulphide isomerase; 87.5 0.79 1.7E-05 40.5 4.2 41 51-91 374-416 (477)
121 TIGR02540 gpx7 putative glutat 87.5 0.91 2E-05 33.8 4.0 40 52-91 22-62 (153)
122 KOG0910 Thioredoxin-like prote 87.4 1.3 2.9E-05 33.3 4.7 40 52-91 61-100 (150)
123 cd03032 ArsC_Spx Arsenate Redu 87.3 6.1 0.00013 28.1 8.1 31 56-92 2-32 (115)
124 PF14595 Thioredoxin_9: Thiore 87.2 0.96 2.1E-05 33.2 3.9 38 52-90 41-78 (129)
125 cd03419 GRX_GRXh_1_2_like Glut 87.1 0.49 1.1E-05 31.0 2.1 22 56-77 2-23 (82)
126 cd02066 GRX_family Glutaredoxi 86.9 0.59 1.3E-05 29.2 2.3 30 56-91 2-31 (72)
127 TIGR02189 GlrX-like_plant Glut 86.7 0.56 1.2E-05 32.7 2.3 22 54-75 8-29 (99)
128 cd03008 TryX_like_RdCVF Trypar 86.6 1.5 3.2E-05 33.0 4.7 40 52-91 25-72 (146)
129 cd03011 TlpA_like_ScsD_MtbDsbE 86.5 0.96 2.1E-05 32.0 3.5 29 52-80 20-48 (123)
130 cd03029 GRX_hybridPRX5 Glutare 86.1 0.74 1.6E-05 29.6 2.5 31 55-91 2-32 (72)
131 cd03418 GRX_GRXb_1_3_like Glut 86.1 0.62 1.3E-05 30.0 2.1 32 55-92 1-32 (75)
132 COG0695 GrxC Glutaredoxin and 86.0 0.61 1.3E-05 31.2 2.1 32 55-92 2-33 (80)
133 cd02971 PRX_family Peroxiredox 85.9 1.3 2.9E-05 31.9 4.1 39 52-90 22-62 (140)
134 TIGR02190 GlrX-dom Glutaredoxi 85.8 0.76 1.6E-05 30.3 2.5 35 52-92 6-40 (79)
135 PRK10329 glutaredoxin-like pro 85.7 0.81 1.7E-05 30.6 2.6 32 55-92 2-33 (81)
136 KOG0191 Thioredoxin/protein di 85.5 1.1 2.4E-05 38.8 4.0 37 52-88 47-83 (383)
137 PHA02125 thioredoxin-like prot 84.8 0.92 2E-05 29.6 2.5 22 56-77 2-23 (75)
138 PLN02399 phospholipid hydroper 84.8 1.4 3.1E-05 35.8 4.1 40 52-91 99-139 (236)
139 TIGR02181 GRX_bact Glutaredoxi 84.8 0.66 1.4E-05 30.4 1.8 31 56-92 1-31 (79)
140 PRK10638 glutaredoxin 3; Provi 84.5 0.87 1.9E-05 30.3 2.3 32 55-92 3-34 (83)
141 cd02970 PRX_like2 Peroxiredoxi 84.4 2 4.3E-05 31.2 4.4 39 53-91 25-64 (149)
142 PRK15317 alkyl hydroperoxide r 84.3 1.7 3.6E-05 39.2 4.7 39 51-90 115-153 (517)
143 PHA03050 glutaredoxin; Provisi 84.1 0.84 1.8E-05 32.4 2.2 22 55-76 14-35 (108)
144 TIGR03143 AhpF_homolog putativ 83.6 1.8 3.9E-05 39.4 4.6 40 51-91 475-514 (555)
145 KOG1731 FAD-dependent sulfhydr 82.5 1 2.2E-05 40.9 2.5 29 52-80 57-85 (606)
146 TIGR02196 GlrX_YruB Glutaredox 82.1 1.2 2.7E-05 27.9 2.3 31 56-92 2-32 (74)
147 PTZ00062 glutaredoxin; Provisi 81.5 2.7 5.8E-05 33.4 4.3 37 53-90 18-54 (204)
148 PTZ00056 glutathione peroxidas 81.2 2.5 5.5E-05 33.2 4.1 39 52-90 39-78 (199)
149 TIGR03140 AhpF alkyl hydropero 80.6 2.6 5.6E-05 38.0 4.5 38 51-89 116-153 (515)
150 TIGR02194 GlrX_NrdH Glutaredox 80.5 1.3 2.7E-05 28.6 1.9 31 56-92 1-31 (72)
151 TIGR01626 ytfJ_HI0045 conserve 80.2 8.6 0.00019 30.0 6.7 29 51-79 58-86 (184)
152 TIGR00365 monothiol glutaredox 79.2 1.5 3.3E-05 30.3 2.0 22 55-76 13-39 (97)
153 TIGR00385 dsbE periplasmic pro 79.1 2.6 5.7E-05 32.1 3.5 38 51-91 62-99 (173)
154 cd03014 PRX_Atyp2cys Peroxired 79.0 3.1 6.8E-05 30.2 3.8 38 52-90 26-64 (143)
155 KOG0191 Thioredoxin/protein di 78.8 3.2 6.8E-05 36.0 4.3 39 52-90 162-202 (383)
156 TIGR01130 ER_PDI_fam protein d 78.6 3.9 8.4E-05 35.7 4.9 38 52-89 18-58 (462)
157 cd03018 PRX_AhpE_like Peroxire 78.2 3.2 7E-05 30.3 3.7 38 53-90 29-68 (149)
158 COG3019 Predicted metal-bindin 77.2 5.2 0.00011 29.9 4.3 24 52-75 24-47 (149)
159 cd03017 PRX_BCP Peroxiredoxin 77.1 4.3 9.2E-05 29.2 4.0 39 52-90 23-63 (140)
160 PRK10606 btuE putative glutath 77.1 3.8 8.3E-05 31.9 3.9 40 52-94 25-65 (183)
161 KOG2501 Thioredoxin, nucleored 76.6 3.7 8.1E-05 31.2 3.6 41 50-90 31-74 (157)
162 PF11287 DUF3088: Protein of u 76.0 1.2 2.7E-05 31.8 0.8 33 62-95 22-54 (112)
163 cd03036 ArsC_like Arsenate Red 76.0 1.9 4.2E-05 30.5 1.9 31 56-92 1-31 (111)
164 PF04134 DUF393: Protein of un 75.7 2.4 5.2E-05 29.8 2.3 29 58-88 1-29 (114)
165 cd02976 NrdH NrdH-redoxin (Nrd 74.4 3 6.6E-05 26.0 2.3 21 56-76 2-22 (73)
166 PRK10824 glutaredoxin-4; Provi 73.7 2.6 5.7E-05 30.3 2.1 15 62-76 28-42 (115)
167 COG5429 Uncharacterized secret 73.2 11 0.00024 30.7 5.6 39 52-91 41-79 (261)
168 PLN02919 haloacid dehalogenase 73.0 5.6 0.00012 39.3 4.7 39 52-90 420-459 (1057)
169 PF05605 zf-Di19: Drought indu 72.9 2.1 4.5E-05 26.3 1.2 19 61-80 2-20 (54)
170 cd03040 GST_N_mPGES2 GST_N fam 72.8 3.1 6.8E-05 26.8 2.1 21 55-75 1-21 (77)
171 cd02977 ArsC_family Arsenate R 72.7 2.6 5.7E-05 29.3 1.8 31 56-92 1-31 (105)
172 PF07803 GSG-1: GSG1-like prot 72.2 6 0.00013 28.4 3.5 32 5-36 1-41 (118)
173 PF08525 OapA_N: Opacity-assoc 72.1 6.4 0.00014 21.2 2.9 22 5-26 5-26 (30)
174 cd02974 AhpF_NTD_N Alkyl hydro 70.3 13 0.00028 25.7 4.8 39 52-92 19-57 (94)
175 PTZ00256 glutathione peroxidas 70.2 6.6 0.00014 30.2 3.8 37 54-90 43-80 (183)
176 cd03028 GRX_PICOT_like Glutare 69.8 4.1 8.9E-05 27.6 2.2 24 62-91 21-44 (90)
177 COG1651 DsbG Protein-disulfide 69.3 3.6 7.8E-05 33.0 2.2 29 51-79 117-145 (244)
178 PRK12759 bifunctional gluaredo 69.1 3.6 7.8E-05 36.1 2.3 22 55-76 3-24 (410)
179 cd03035 ArsC_Yffb Arsenate Red 68.0 4.8 0.0001 28.3 2.3 31 56-92 1-31 (105)
180 TIGR03521 GldG gliding-associa 67.5 18 0.00039 33.1 6.5 45 50-95 46-94 (552)
181 PF04592 SelP_N: Selenoprotein 67.2 11 0.00025 30.5 4.6 41 51-91 25-69 (238)
182 PRK13344 spxA transcriptional 66.6 6.4 0.00014 28.9 2.9 31 56-92 2-32 (132)
183 TIGR01617 arsC_related transcr 66.6 4.2 9.2E-05 29.0 1.9 31 56-92 1-31 (117)
184 PRK01655 spxA transcriptional 66.5 5.2 0.00011 29.3 2.4 31 56-92 2-32 (131)
185 cd03065 PDI_b_Calsequestrin_N 66.5 10 0.00023 27.3 3.9 40 52-91 27-72 (120)
186 cd03033 ArsC_15kD Arsenate Red 66.5 5.8 0.00013 28.3 2.5 31 56-92 2-32 (113)
187 PF02114 Phosducin: Phosducin; 66.1 8.8 0.00019 31.7 3.9 38 52-90 146-183 (265)
188 COG3011 Predicted thiol-disulf 64.7 8.3 0.00018 28.7 3.1 34 52-88 6-40 (137)
189 TIGR03143 AhpF_homolog putativ 62.1 15 0.00033 33.4 5.0 41 51-92 365-405 (555)
190 PRK12559 transcriptional regul 61.5 7.4 0.00016 28.5 2.4 31 56-92 2-32 (131)
191 cd03074 PDI_b'_Calsequestrin_C 61.1 19 0.00041 25.8 4.2 43 52-94 20-67 (120)
192 PRK15317 alkyl hydroperoxide r 59.6 17 0.00036 32.8 4.8 39 52-92 19-57 (517)
193 PRK00522 tpx lipid hydroperoxi 58.8 16 0.00035 27.6 4.0 38 52-90 44-82 (167)
194 PF13899 Thioredoxin_7: Thiore 58.2 9.3 0.0002 25.1 2.2 23 52-74 17-39 (82)
195 cd03015 PRX_Typ2cys Peroxiredo 58.1 16 0.00034 27.7 3.8 39 52-90 29-69 (173)
196 cd02955 SSP411 TRX domain, SSP 56.6 29 0.00063 25.1 4.8 22 52-73 15-36 (124)
197 TIGR01616 nitro_assoc nitrogen 56.4 12 0.00025 27.3 2.7 32 55-92 2-33 (126)
198 TIGR03140 AhpF alkyl hydropero 55.2 23 0.00049 32.0 4.9 39 52-92 19-57 (515)
199 COG4545 Glutaredoxin-related p 55.0 8.3 0.00018 25.7 1.5 21 57-77 5-25 (85)
200 COG2143 Thioredoxin-related pr 53.5 5.2 0.00011 30.6 0.4 14 183-196 106-119 (182)
201 PRK09437 bcp thioredoxin-depen 52.8 22 0.00047 26.1 3.7 39 52-90 30-70 (154)
202 PF12911 OppC_N: N-terminal TM 52.2 14 0.0003 22.4 2.1 22 9-30 14-35 (56)
203 PRK00293 dipZ thiol:disulfide 52.0 26 0.00057 32.2 4.8 39 52-91 474-515 (571)
204 PF02630 SCO1-SenC: SCO1/SenC; 51.8 93 0.002 23.7 7.2 42 51-92 51-96 (174)
205 cd03041 GST_N_2GST_N GST_N fam 50.0 13 0.00029 24.0 1.9 20 56-75 2-21 (77)
206 PF05768 DUF836: Glutaredoxin- 48.5 16 0.00034 24.1 2.1 36 55-92 1-36 (81)
207 KOG4277 Uncharacterized conser 47.3 14 0.00031 31.3 2.1 27 51-77 42-68 (468)
208 PRK10397 lipoprotein; Provisio 46.9 29 0.00063 25.5 3.3 61 34-94 28-99 (137)
209 TIGR03137 AhpC peroxiredoxin. 46.6 31 0.00068 26.5 3.9 39 52-90 31-71 (187)
210 PF15240 Pro-rich: Proline-ric 46.3 13 0.00027 28.9 1.5 14 16-29 1-14 (179)
211 PHA00616 hypothetical protein 45.2 16 0.00035 21.6 1.5 19 62-80 2-20 (44)
212 cd02958 UAS UAS family; UAS is 44.4 21 0.00045 24.9 2.3 23 52-74 17-39 (114)
213 cd02960 AGR Anterior Gradient 43.6 24 0.00052 25.9 2.6 23 52-74 23-45 (130)
214 PF11238 DUF3039: Protein of u 42.3 8.6 0.00019 24.1 0.1 14 61-74 44-57 (58)
215 PTZ00062 glutaredoxin; Provisi 42.0 22 0.00047 28.3 2.3 24 52-75 113-139 (204)
216 PF00096 zf-C2H2: Zinc finger, 41.8 6.9 0.00015 19.0 -0.4 17 62-78 1-17 (23)
217 TIGR00014 arsC arsenate reduct 41.8 23 0.0005 25.1 2.2 31 56-92 1-31 (114)
218 PF13894 zf-C2H2_4: C2H2-type 41.7 7.1 0.00015 18.7 -0.3 18 62-79 1-18 (24)
219 PHA00407 phage lambda Rz1-like 40.8 52 0.0011 21.8 3.5 27 9-36 30-56 (84)
220 PRK10026 arsenate reductase; P 40.7 31 0.00067 25.7 2.8 32 55-92 3-34 (141)
221 cd03051 GST_N_GTT2_like GST_N 39.8 21 0.00045 22.2 1.6 20 57-76 2-21 (74)
222 cd03059 GST_N_SspA GST_N famil 39.6 22 0.00048 22.2 1.8 19 57-75 2-20 (73)
223 PF09822 ABC_transp_aux: ABC-t 39.5 67 0.0015 26.1 5.0 41 51-91 24-69 (271)
224 cd03055 GST_N_Omega GST_N fami 38.8 28 0.00061 23.2 2.2 23 53-75 16-38 (89)
225 PF09538 FYDLN_acid: Protein o 38.0 11 0.00025 26.8 0.1 16 59-74 19-39 (108)
226 TIGR03850 bind_CPR_0540 carboh 38.0 1.8E+02 0.0039 25.0 7.7 20 74-93 50-72 (437)
227 cd03034 ArsC_ArsC Arsenate Red 37.8 29 0.00063 24.5 2.2 31 56-92 1-31 (112)
228 cd00570 GST_N_family Glutathio 36.8 23 0.0005 21.1 1.4 19 57-75 2-20 (71)
229 PF07098 DUF1360: Protein of u 36.8 14 0.0003 26.2 0.4 14 62-75 58-71 (105)
230 PRK10853 putative reductase; P 36.6 34 0.00074 24.5 2.5 31 56-92 2-32 (118)
231 cd03037 GST_N_GRX2 GST_N famil 36.2 20 0.00044 22.4 1.1 19 57-75 2-20 (71)
232 PF09680 Tiny_TM_bacill: Prote 35.2 44 0.00094 17.0 2.0 14 11-24 6-19 (24)
233 TIGR03746 conj_TIGR03746 integ 35.0 41 0.00089 26.6 2.8 23 50-72 84-106 (202)
234 KOG2703 C4-type Zn-finger prot 35.0 22 0.00048 31.2 1.4 34 57-90 64-97 (460)
235 KOG1879 UDP-glucose:glycoprote 34.8 1.1E+02 0.0023 31.2 6.1 84 101-188 36-119 (1470)
236 smart00594 UAS UAS domain. 33.2 38 0.00082 24.1 2.2 24 51-74 26-49 (122)
237 PF13912 zf-C2H2_6: C2H2-type 33.1 12 0.00025 19.0 -0.4 19 62-80 2-20 (27)
238 COG3809 Uncharacterized protei 32.7 24 0.00051 23.6 1.0 18 63-80 23-43 (88)
239 cd03045 GST_N_Delta_Epsilon GS 32.3 32 0.00069 21.5 1.6 20 56-75 1-20 (74)
240 COG1996 RPC10 DNA-directed RNA 32.0 15 0.00033 22.3 -0.0 18 52-69 14-32 (49)
241 PF10969 DUF2771: Protein of u 31.9 62 0.0014 24.6 3.3 20 8-27 1-20 (161)
242 PF13807 GNVR: G-rich domain o 31.7 89 0.0019 20.5 3.8 20 6-25 53-72 (82)
243 PF13719 zinc_ribbon_5: zinc-r 31.6 14 0.00031 20.7 -0.2 13 63-75 4-16 (37)
244 PF07172 GRP: Glycine rich pro 31.6 49 0.0011 22.9 2.5 16 12-27 6-21 (95)
245 KOG1752 Glutaredoxin and relat 31.6 40 0.00087 23.7 2.1 22 54-75 14-35 (104)
246 PF10555 MraY_sig1: Phospho-N- 31.3 21 0.00047 15.4 0.4 6 191-196 2-7 (13)
247 PF09654 DUF2396: Protein of u 31.2 22 0.00047 26.5 0.7 15 61-75 6-20 (161)
248 PF11021 DUF2613: Protein of u 31.1 1.2E+02 0.0025 18.9 3.9 22 6-27 1-22 (56)
249 PF03470 zf-XS: XS zinc finger 31.1 15 0.00033 21.6 -0.1 6 64-69 1-6 (43)
250 TIGR02098 MJ0042_CXXC MJ0042 f 31.0 12 0.00026 20.8 -0.5 14 62-75 3-16 (38)
251 cd03060 GST_N_Omega_like GST_N 30.9 41 0.0009 21.0 2.0 19 57-75 2-20 (71)
252 TIGR02652 conserved hypothetic 30.6 23 0.00049 26.5 0.7 15 61-75 9-23 (163)
253 PF02038 ATP1G1_PLM_MAT8: ATP1 30.0 65 0.0014 19.6 2.5 21 8-28 15-35 (50)
254 KOG0190 Protein disulfide isom 29.3 52 0.0011 29.8 2.9 28 52-79 42-69 (493)
255 cd03053 GST_N_Phi GST_N family 29.1 47 0.001 20.9 2.0 21 55-75 1-21 (76)
256 PF06764 DUF1223: Protein of u 27.7 1.3E+02 0.0027 23.9 4.5 36 55-91 1-36 (202)
257 PRK00398 rpoP DNA-directed RNA 27.1 19 0.00042 21.0 -0.1 18 52-69 11-29 (46)
258 PF11364 DUF3165: Protein of u 27.0 57 0.0012 21.9 2.0 25 3-27 18-42 (81)
259 PF11009 DUF2847: Protein of u 26.9 85 0.0018 22.2 3.1 37 56-92 22-59 (105)
260 cd03031 GRX_GRX_like Glutaredo 26.8 50 0.0011 24.7 2.0 31 56-92 2-38 (147)
261 PF12606 RELT: Tumour necrosis 26.7 81 0.0017 19.2 2.5 18 12-29 4-21 (50)
262 PF14255 Cys_rich_CPXG: Cystei 26.7 23 0.0005 21.7 0.1 13 62-74 1-13 (52)
263 PF10609 ParA: ParA/MinD ATPas 26.5 7.3 0.00016 26.2 -2.3 19 55-73 59-77 (81)
264 PF00837 T4_deiodinase: Iodoth 25.4 79 0.0017 25.8 3.0 39 52-90 102-140 (237)
265 PRK00464 nrdR transcriptional 25.3 25 0.00054 26.7 0.1 32 139-171 102-133 (154)
266 PF02439 Adeno_E3_CR2: Adenovi 25.2 1.1E+02 0.0024 17.5 2.7 11 11-21 6-16 (38)
267 PF04475 DUF555: Protein of un 25.2 54 0.0012 22.9 1.7 24 50-73 36-59 (102)
268 PF01667 Ribosomal_S27e: Ribos 24.4 17 0.00037 22.6 -0.7 14 58-71 4-17 (55)
269 smart00834 CxxC_CXXC_SSSS Puta 24.3 15 0.00033 20.6 -1.0 15 60-74 4-18 (41)
270 PF13453 zf-TFIIB: Transcripti 23.6 38 0.00083 19.2 0.7 17 63-79 21-40 (41)
271 TIGR01732 tiny_TM_bacill conse 23.5 96 0.0021 16.1 2.1 13 12-24 9-21 (26)
272 KOG1879 UDP-glucose:glycoprote 23.4 1.8E+02 0.0039 29.7 5.4 41 52-94 170-210 (1470)
273 smart00355 ZnF_C2H2 zinc finge 23.3 52 0.0011 15.4 1.1 17 62-78 1-17 (26)
274 PF08298 AAA_PrkA: PrkA AAA do 23.1 52 0.0011 28.5 1.6 20 59-84 149-168 (358)
275 PRK11509 hydrogenase-1 operon 22.9 34 0.00073 25.2 0.4 15 182-196 81-95 (132)
276 cd03056 GST_N_4 GST_N family, 22.7 60 0.0013 20.0 1.6 19 57-75 2-20 (73)
277 COG1997 RPL43A Ribosomal prote 22.7 32 0.00069 23.5 0.2 18 53-70 27-44 (89)
278 PF14353 CpXC: CpXC protein 22.1 21 0.00046 25.7 -0.8 16 58-73 35-50 (128)
279 KOG0908 Thioredoxin-like prote 22.1 1.7E+02 0.0036 24.4 4.2 34 52-85 21-54 (288)
280 PRK00415 rps27e 30S ribosomal 21.5 24 0.00052 22.3 -0.5 14 58-71 8-21 (59)
281 PF09049 SNN_transmemb: Stanni 21.2 1.4E+02 0.003 16.0 2.5 18 5-22 7-24 (33)
282 PTZ00255 60S ribosomal protein 21.2 9.5 0.0002 26.2 -2.6 18 52-69 27-44 (90)
283 COG2875 CobM Precorrin-4 methy 20.2 1.2E+02 0.0025 24.9 3.0 54 131-191 52-105 (254)
284 PF10717 ODV-E18: Occlusion-de 20.0 2.4E+02 0.0053 19.1 4.0 9 13-21 30-38 (85)
No 1
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=99.94 E-value=1.8e-26 Score=173.51 Aligned_cols=131 Identities=15% Similarity=0.259 Sum_probs=112.4
Q ss_pred CCCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCCCCCcChHHHHHHHHHHHhcCCccHHHHHHHHHhcC
Q 029265 50 DSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQ 129 (196)
Q Consensus 50 ~~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~~h~~s~~aa~a~~a~~~~~~~~~~~~~~~lf~~q 129 (196)
++|+++|++|+||.||||+++++.+++++.++ ++++++++++|+. +..+..+++++.++.+.++++||+|++++|.++
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~ 80 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKEFPIL-GESSVLAARVALAVWKNGPGKYLEFHNALMATR 80 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEeCCcc-CcchHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 56999999999999999999999999988776 5799999999985 445667788888776667789999999999986
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCCchhhHHHHHHHHHHhccCcccccCC
Q 029265 130 EKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 130 ~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~~~~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
..+ +. +.|.+++.+ .|++. ++|.+++++..+...++.+.+.+.++||+|||||
T Consensus 81 ~~~--------~~----~~l~~~a~~-~gl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~ 133 (154)
T cd03023 81 GRL--------NE----ESLLRIAKK-AGLDE-AKLKKDMDDPEIEATIDKNRQLARALGITGTPAF 133 (154)
T ss_pred CCC--------CH----HHHHHHHHH-cCCCH-HHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeE
Confidence 421 22 357778888 89995 9999999998899999999999999999999996
No 2
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=99.92 E-value=7.2e-25 Score=166.68 Aligned_cols=137 Identities=22% Similarity=0.288 Sum_probs=111.8
Q ss_pred CCCccccCCCCCCCCeEEEEecCCCChhhhhhchHHHHHHHhc--CCcEEEEEEecCCCCCcChHHHHHHHHHHHhcCCc
Q 029265 39 YDGFFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHY--GPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSS 116 (196)
Q Consensus 39 ~~g~~~g~~~~~~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y--~~~v~~~~~~~pl~~h~~s~~aa~a~~a~~~~~~~ 116 (196)
+.++++|+++ |+++|++|+||.||+|+++++.+.+++++| .++|+|++|++|++.|. +..++.++.++...+ +
T Consensus 2 ~~~~~~G~~~---a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~-~~~a~~~~~~~~~~~-~ 76 (162)
T PF13462_consen 2 EYDPTIGNPD---APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHS-SLRAAMAAECVADQG-K 76 (162)
T ss_dssp TTSEEES-TT---TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHH-HHHHHHHHHHHHHHT-H
T ss_pred CCCCeecCCC---CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchh-HHHHHHHHHHHHHHh-H
Confidence 4577889854 999999999999999999999999999999 68999999999887655 678888888888777 7
Q ss_pred cHHHHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCCchhhHHHHHHHHHHhccCcccccCC
Q 029265 117 ATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 117 ~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~~~~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
.||.+++.+|+.++.+... .++++. .+... ++|.+++.+..+...+....+.+.+.||+|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--------------~~i~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~ 140 (162)
T PF13462_consen 77 YFWFFHELLFSQQENFENK--------------KDIAAN-AGGSN-EQFNKCLNSDEIKAQLEADSQLARQLGITGTPTF 140 (162)
T ss_dssp HHHHHHHHHHHHCHSTSSH--------------HHHHHH-TTSHH-HHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEE
T ss_pred HHHHHHHHHHHhhhccchh--------------HHHHHH-cCCCH-HHHHHHhhchHHHHHHHHHHHHHHHcCCccccEE
Confidence 8888888899998775431 123334 34443 8899999999999999999999999999999996
No 3
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=99.89 E-value=1.3e-22 Score=156.66 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=109.3
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCCCCCcChHHHHHHHHHHHhcCCccHHHHHHHHHhcCh
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQE 130 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~~h~~s~~aa~a~~a~~~~~~~~~~~~~~~lf~~q~ 130 (196)
+++++|++|+||.||||+++++.+.+++++++++|+|+++++++.. ..+..+++++.++.. .+.+++|++.+|+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~aa~a~~aa~~--~~~~~~~~~~lf~~~~ 90 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVFGG-GEGEPLARAFYAAEA--LGLEDKLHAALFEAIH 90 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCcccc-ccchHHHHHHHHHHH--cCcHhhhhHHHHHHHH
Confidence 6899999999999999999999999999999888988877665532 335677887777655 3578999999998764
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCCchhhHHHHHHHHHHhccCcccccCC
Q 029265 131 KFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 131 ~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~~~~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
.... +.+. .+.|.++|.+ .|++. ++|.+++++..+...++.+.+.+.++||+|||||
T Consensus 91 ~~~~----~~~~---~~~l~~~a~~-~Gl~~-~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~ 147 (178)
T cd03019 91 EKRK----RLLD---PDDIRKIFLS-QGVDK-KKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAF 147 (178)
T ss_pred HhCC----CCCC---HHHHHHHHHH-hCCCH-HHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeE
Confidence 4221 1121 3468888989 89995 9999999999998999999999999999999997
No 4
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=99.84 E-value=4.6e-20 Score=146.75 Aligned_cols=130 Identities=10% Similarity=0.024 Sum_probs=97.4
Q ss_pred CCeEEEEecCCCChhhhhhchHH---HHHHHhcCCcEEEEEEecCCCCCcChHHHHHHHHHHHhcC-CccHH-HHHHHHH
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPL---KQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRTN-SSATF-CLLEWFF 126 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l---~~~~~~y~~~v~~~~~~~pl~~h~~s~~aa~a~~a~~~~~-~~~~~-~~~~~lf 126 (196)
.+.+|+||+||.||||+++++.+ +.+.++++++++++.+++++.. +.+..++.+..++...+ +++++ .+++.++
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~f~~-~~~~~~~~a~~~a~~~~~~~k~~~~lf~~i~ 115 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVEFLG-PLGKELTQAWAVAMALGVEDKVTPPLFEGVQ 115 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecccccc-hhhHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 45789999999999999999976 6777888889999988776531 23333344433333332 34554 5777776
Q ss_pred hcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCCchhhHHHHHHHHHHhccCcccccCC
Q 029265 127 KQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 127 ~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~~~~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
++|+. . + .+.|.+++.+ .|++. ++|.+++++..+...++.+.+.++++||+|||||
T Consensus 116 ~~~~~-~-------~----~~~L~~~a~~-~Gld~-~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtf 171 (207)
T PRK10954 116 KTQTI-Q-------S----AADIRDVFIK-AGVKG-EDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAM 171 (207)
T ss_pred ccCCC-C-------C----HHHHHHHHHH-cCCCH-HHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 65521 1 2 2357788888 89995 9999999999999999999999999999999997
No 5
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=99.79 E-value=1.6e-18 Score=135.56 Aligned_cols=134 Identities=16% Similarity=0.232 Sum_probs=110.1
Q ss_pred eEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCCCCCc-----------------------------------
Q 029265 54 IIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHD----------------------------------- 98 (196)
Q Consensus 54 vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~~h~----------------------------------- 98 (196)
++|..|+|+.||||..+++.+.++.++|.+++++.+|+++|..+.
T Consensus 1 ~~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLELL 80 (193)
T ss_pred CeEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhHhcc
Confidence 479999999999999999999999999977799999988774332
Q ss_pred ----ChHHHHHHHHHHHhcCCccHHHHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCCchh
Q 029265 99 ----NAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRST 174 (196)
Q Consensus 99 ----~s~~aa~a~~a~~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~~~~ 174 (196)
++..+++++.++...++++++.|++++|... +.++ .+.+.. +.|.+++.+ +|++. ++|.+++.+..+
T Consensus 81 ~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~---~~~~-~~i~~~---~~l~~ia~~-~Gld~-~~~~~~~~s~~~ 151 (193)
T cd03025 81 LFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAH---YVEG-RDLADT---EVLRELAIE-LGLDV-EEFLEDFQSDEA 151 (193)
T ss_pred cCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHH---HHcC-CCCCCH---HHHHHHHHH-cCCCH-HHHHHHHcChHH
Confidence 2667778877787777789999999998642 2222 244443 357788888 89995 999999999999
Q ss_pred hHHHHHHHHHHhccCcccccCC
Q 029265 175 DLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 175 ~~~~r~~~k~a~~~GV~GTPtF 196 (196)
+..++.+.+.+.++||+|||||
T Consensus 152 ~~~l~~~~~~a~~~gv~g~Ptf 173 (193)
T cd03025 152 KQAIQEDQKLARELGINGFPTL 173 (193)
T ss_pred HHHHHHHHHHHHHcCCCccCEE
Confidence 9999999999999999999997
No 6
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.7e-17 Score=134.79 Aligned_cols=142 Identities=18% Similarity=0.253 Sum_probs=93.9
Q ss_pred CccccCCCCCCCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCCCCCcC--hHHHHHHHHHHHhcCCccH
Q 029265 41 GFFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDN--AYATSRALHIVNRTNSSAT 118 (196)
Q Consensus 41 g~~~g~~~~~~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~~h~~--s~~aa~a~~a~~~~~~~~~ 118 (196)
..+.|+ .+++++|++|+|+.||||++.++.+++.+..+ +++++++|++|+..+.. +..+++++.|+...+..+|
T Consensus 76 ~~~~G~---~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~-~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~~~~y 151 (244)
T COG1651 76 DVVLGN---PYAPVTVVEFFDYTCPYCKEAFPELKKKYIDD-GKVRLVLREFPFLDPACPYCRRAAQAARCAADQGIVRY 151 (244)
T ss_pred cccccC---CCCCceEEEEecCcCccHHHHHHHHHHHhhhc-CCCceEEEEeecCCCCcHHHHHHHHHHHHhccccchhH
Confidence 334455 45899999999999999999999998755543 57799999998854322 2334454444443322469
Q ss_pred HHHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCCchhhHHHHHHHHHHhccCcccccCC
Q 029265 119 FCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 119 ~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~~~~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
|.|++.+|.+|.+.+.... .. ......+.. ...+ .++..++.....+..+..+.+.+.++||+|||||
T Consensus 152 ~~~~~~l~~~~~~~~~~~~-----~~--~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~~~~~~a~~~gv~gTPt~ 219 (244)
T COG1651 152 WAFHDALFGSQAEAWAASI-----LC--AKDLAKADL-AALD--EGKKAKLNQKACDALIAKNYKLAQQLGVNGTPTF 219 (244)
T ss_pred HHHHHHHhhccccchhhhh-----hh--hhhhhhhhH-HHHH--hhhhhccChHHHHHHHHHHHHHHHhcCCCcCCeE
Confidence 9999999999965443221 00 011111111 1111 3445555555678889999999999999999997
No 7
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=7.9e-17 Score=127.90 Aligned_cols=137 Identities=19% Similarity=0.236 Sum_probs=111.7
Q ss_pred CCCCeEEEEecCCCChhhhhhchHHHHHHHhcCC--cEEEEEEecCC---------------------------------
Q 029265 50 DSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP--HVSLVVHLLPL--------------------------------- 94 (196)
Q Consensus 50 ~~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~--~v~~~~~~~pl--------------------------------- 94 (196)
+..+++|.+|+|+.||||.-.++.|++++.+|++ +|++++|+|-|
T Consensus 2 ~~~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~~~ 81 (225)
T COG2761 2 NPMKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHARLE 81 (225)
T ss_pred CCceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHHHH
Confidence 3478999999999999999999999999998875 55566665422
Q ss_pred ---------------CCCcChHHHHHHHHHHHhcCCccHHHHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCC
Q 029265 95 ---------------PYHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGN 159 (196)
Q Consensus 95 ---------------~~h~~s~~aa~a~~a~~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~ 159 (196)
..+++++.|+++..++...|+ ..+.|.+.+|+. ++.++ .|.+. .+.|.++|.+ +|+
T Consensus 82 ~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~-~~~~~~~~lf~A---yF~eg-~nI~D---~dVL~diA~~-~GL 152 (225)
T COG2761 82 ELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGK-AQDRFLEALFEA---YFEEG-RNIGD---EDVLADIAEE-VGL 152 (225)
T ss_pred HhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCc-hHHHHHHHHHHH---HhccC-CCCCc---HHHHHHHHHH-hCC
Confidence 134566788899998888777 899999999854 33322 24444 3678999999 999
Q ss_pred CchHHHhhccCCchhhHHHHHHHHHHhccCcccccCC
Q 029265 160 SYSSALESGFSDRSTDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
|. ++|.+.+.+......+|.+.+.+++.||+|.|+|
T Consensus 153 D~-~~~~~~L~s~~~~~avr~d~~~A~e~gI~gVP~f 188 (225)
T COG2761 153 DR-EEFKADLASDAAKDAVRQDEAAAQEMGIRGVPTF 188 (225)
T ss_pred CH-HHHHHHHhChHHHHHHHHHHHHHHHCCCccCceE
Confidence 95 9999999999999999999999999999999998
No 8
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=99.72 E-value=3.5e-17 Score=128.83 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=104.6
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcC--CcEEEEEEecCCCC-------------------------------------
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYG--PHVSLVVHLLPLPY------------------------------------- 96 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~--~~v~~~~~~~pl~~------------------------------------- 96 (196)
|+.|+|+.||||+-.++.+.+++++|. +++++++|+++|..
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~ 80 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAAAE 80 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHc
Confidence 579999999999999999999999985 37999999886531
Q ss_pred ----------CcChHHHHHHHHHHHhcCCccHHHHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHh
Q 029265 97 ----------HDNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALE 166 (196)
Q Consensus 97 ----------h~~s~~aa~a~~a~~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~ 166 (196)
+.++..+++++.++... +++++|+++||+.+-. . + .+.+.. +.|.++|.+ +|++. ++|.
T Consensus 81 gi~~~~~~~~~~~s~~a~~~~~~a~~~--~~~~~~~~~lf~a~~~--~-~-~~i~~~---~~l~~~a~~-~Gld~-~~~~ 149 (201)
T cd03024 81 GLEFDFDRVRPPNTFDAHRLIHLAKEQ--GKQDALVEALFRAYFT--E-G-KDIGDR---DVLVDLAEE-AGLDA-AEAR 149 (201)
T ss_pred CCcccCCCCccCCcHHHHHHHHHHhcc--CcHHHHHHHHHHHHHc--c-C-CCCCCH---HHHHHHHHH-cCCCH-HHHH
Confidence 12566777777777653 5899999999986421 1 1 233333 357788888 89995 9999
Q ss_pred hccCCchhhHHHHHHHHHHhccCcccccCC
Q 029265 167 SGFSDRSTDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 167 ~~~~~~~~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
+++++..+...++.+.+.+.++||+|||||
T Consensus 150 ~~~~~~~~~~~~~~~~~~a~~~gv~G~Pt~ 179 (201)
T cd03024 150 AVLASDEYADEVRADEARARQLGISGVPFF 179 (201)
T ss_pred HHhcCcccchHHHHHHHHHHHCCCCcCCEE
Confidence 999999999999999999999999999997
No 9
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=99.72 E-value=5.2e-17 Score=126.77 Aligned_cols=130 Identities=18% Similarity=0.285 Sum_probs=99.6
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCCCCC-------------------------------------
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYH------------------------------------- 97 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~~h------------------------------------- 97 (196)
||++|+|+.||||+.+++.+.++.++|. ++++.+|+++|...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~-~~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~~~ 79 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYP-DVEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFNFP 79 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHT-TCEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TBTS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCcccCC
Confidence 7999999999999999999999999984 49999999986422
Q ss_pred ----cChHHHHHHHHHHHhcCCccHHHHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCCch
Q 029265 98 ----DNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRS 173 (196)
Q Consensus 98 ----~~s~~aa~a~~a~~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~~~ 173 (196)
.++..+.+++.++...+ +..++++++|.. ++.++ .+.+.. +.|.+++.+ .|++. +++.+.+.+..
T Consensus 80 ~~~~~~s~~a~~~~~~a~~~~--~~~~~~~al~~a---~~~~~-~~i~~~---~vl~~~~~~-~Gld~-~~~~~~~~~~~ 148 (193)
T PF01323_consen 80 PPFPGNSRPAHRAAYAAQEQG--KADAFADALFRA---YFVEG-RDISDP---DVLAEIAEE-AGLDP-DEFDAALDSPE 148 (193)
T ss_dssp STHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---HHTSS-T-TSSH---HHHHHHHHH-TT--H-HHHHHHHTSHH
T ss_pred chhhhhhHHHHHHHHHHHHhh--hhhHHHHHHHHH---HHhcc-cCCCCH---HHHHHHHHH-cCCcH-HHHHHHhcchH
Confidence 14456666666666554 667777777743 22222 234443 457788888 89995 99999999999
Q ss_pred hhHHHHHHHHHHhccCcccccCC
Q 029265 174 TDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 174 ~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
+...++.+.+.+.++||+|||+|
T Consensus 149 ~~~~~~~~~~~a~~~gv~GvP~~ 171 (193)
T PF01323_consen 149 VKAALEEDTAEARQLGVFGVPTF 171 (193)
T ss_dssp HHHHHHHHHHHHHHTTCSSSSEE
T ss_pred HHHHHHHHHHHHHHcCCcccCEE
Confidence 99999999999999999999996
No 10
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=99.68 E-value=2.6e-16 Score=128.65 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=83.1
Q ss_pred CCccccCCCCCCCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCCCCCcChHHHHHHHHHHHhcCCccHH
Q 029265 40 DGFFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSSATF 119 (196)
Q Consensus 40 ~g~~~g~~~~~~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~~h~~s~~aa~a~~a~~~~~~~~~~ 119 (196)
..+++|+++ ++.+|.+|+|+.||||+++|+.+.++++. ++|++++.++|+ .|+.|...++++.|+ .+++++|
T Consensus 108 ~~i~~g~~~---ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~-l~~~S~~~a~ailca--~d~~~a~ 179 (251)
T PRK11657 108 HWILDGKAD---APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGI-IKPDSPGKAAAILAA--KDPAKAL 179 (251)
T ss_pred CCccccCCC---CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccc-cCcchHHHHHHHHhc--cCHHHHH
Confidence 356777754 99999999999999999999999988774 678888877776 577776555544443 4677888
Q ss_pred HHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCCchhhHHHHHHHHHHhccCcccccCC
Q 029265 120 CLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 120 ~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~~~~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
+.++..+... |+.. . ...+.+....+..+.+++.++||+|||+|
T Consensus 180 ~~~~~~~~~~----------------------------~~~~-~----~~~~~~~~~~i~~n~~l~~~lGv~GTPai 223 (251)
T PRK11657 180 QEYEASGGKL----------------------------GLKP-P----ASIPAAVRKQLADNQKLMDDLGANATPAI 223 (251)
T ss_pred HHHHHhhhcc----------------------------CCCc-c----ccCCHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 8777655321 1110 0 00123355678889999999999999986
No 11
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=99.63 E-value=2.4e-15 Score=116.78 Aligned_cols=130 Identities=14% Similarity=0.194 Sum_probs=93.8
Q ss_pred EecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCCC--------------------CCcChHHHHHHHHHHHhcCCcc
Q 029265 58 AFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLP--------------------YHDNAYATSRALHIVNRTNSSA 117 (196)
Q Consensus 58 ~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~--------------------~h~~s~~aa~a~~a~~~~~~~~ 117 (196)
.|.||.|++|..++|.+.++.++|.++|+|.+++..+- .+..++.++.|..|+..+|+++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg~k~ 81 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQGKKK 81 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT-H-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhChhh
Confidence 58999999999999999999999999999999865431 2356788898888888778887
Q ss_pred HHHHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCCchhhHHHHHHHHHHhccCcccccCC
Q 029265 118 TFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 118 ~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~~~~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
..+|+.+| |..+...+ .+.+. .+.+.++|++ +|+| .++|.+.+.+.......+.+.+.++++||+|+||+
T Consensus 82 ~~~fL~~l---Q~a~~~~~-~~~s~---~~~l~~iA~~-~gLD-~~~F~~d~~S~~~~~~~~~D~~la~~m~I~~~Ptl 151 (176)
T PF13743_consen 82 ARRFLRAL---QEALFLEG-KNYSD---EELLLEIAEE-LGLD-VEMFKEDLHSDEAKQAFQEDQQLAREMGITGFPTL 151 (176)
T ss_dssp -HHHHHHH---HHHHHTS----TTS---HHHHHHHHHH-TT---HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEE
T ss_pred HHHHHHHH---HHHHHhcC-CCCCH---HHHHHHHHHH-hCCC-HHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 77777766 33333322 23343 2468889999 8999 59999999999999999999999999999999985
No 12
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=99.62 E-value=4.9e-15 Score=115.63 Aligned_cols=129 Identities=17% Similarity=0.158 Sum_probs=99.6
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCCC----------------------------------------
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLP---------------------------------------- 95 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~---------------------------------------- 95 (196)
|+.|+|+.||||+-..+.++++.++|. +.+.+|++.|.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~--~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 78 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHG--ATVRYRPILLGGVFKATGNVPPANRPPAKGRYRLRDLERWARRYGIPLRFP 78 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhC--CeeEEeeeeHHHHHHHhCCCCCcccccHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 578999999999999999999988884 66777665220
Q ss_pred --CCcChHHHHHHHHHHHhcCCccHHHHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCCch
Q 029265 96 --YHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRS 173 (196)
Q Consensus 96 --~h~~s~~aa~a~~a~~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~~~ 173 (196)
+..++..+++++.++...+ +++++|+++||... | .++ .+.+.. +.|.+++.+ .|++. ++|.+++++..
T Consensus 79 ~~~~~~s~~a~~~~~~a~~~~-~~~~~~~~~lf~a~--~-~~~-~~i~~~---~~l~~~a~~-~Gld~-~~~~~~~~~~~ 148 (192)
T cd03022 79 PRFPPNTLRAMRAALAAQAEG-DAAEAFARAVFRAL--W-GEG-LDIADP---AVLAAVAAA-AGLDA-DELLAAADDPA 148 (192)
T ss_pred CCCCCChHHHHHHHHHHHhCc-hhHHHHHHHHHHHH--h-CCC-CCCCCH---HHHHHHHHH-cCCCH-HHHHHHcCCHH
Confidence 0124556777777776554 48999999999752 2 111 233332 457888889 89995 99999999999
Q ss_pred hhHHHHHHHHHHhccCcccccCC
Q 029265 174 TDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 174 ~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
++..++.+.+.+.++||+|||||
T Consensus 149 ~~~~l~~~~~~a~~~gi~gvPtf 171 (192)
T cd03022 149 VKAALRANTEEAIARGVFGVPTF 171 (192)
T ss_pred HHHHHHHHHHHHHHcCCCcCCeE
Confidence 99999999999999999999997
No 13
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=99.55 E-value=3.4e-14 Score=97.97 Aligned_cols=68 Identities=29% Similarity=0.300 Sum_probs=54.9
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCCCCCc--ChHHHHHHHHHHHhcCCccHHHHHHHH
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHD--NAYATSRALHIVNRTNSSATFCLLEWF 125 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~~h~--~s~~aa~a~~a~~~~~~~~~~~~~~~l 125 (196)
|++|+|+.||+|+.+++.++++++.+.+++++++++++++.+. .+..+++++.++... +.+++|++.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 70 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQ--GKFEALHEAL 70 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHc--CcHHHHHHHH
Confidence 5799999999999999999998877788999999999987663 566677777666532 5677777766
No 14
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=99.49 E-value=1.4e-13 Score=108.61 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=54.1
Q ss_pred CCCccccCCCCCCCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCCCCCcChHHHHHHHHHH
Q 029265 39 YDGFFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIV 110 (196)
Q Consensus 39 ~~g~~~g~~~~~~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~~h~~s~~aa~a~~a~ 110 (196)
.+...+|+++ ++++|++|+|+.||||+++++.+.+ ..++++++++++|+..|+.|...++++.|+
T Consensus 67 ~~~i~~g~~~---~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca 131 (197)
T cd03020 67 DDAIVYGKGN---GKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCA 131 (197)
T ss_pred ccCeEEcCCC---CCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcc
Confidence 4567788755 9999999999999999999999877 356899999999998888887766666554
No 15
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=99.44 E-value=3.7e-13 Score=108.89 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=43.4
Q ss_pred CccccCCCCCCCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCCC-CCcChH
Q 029265 41 GFFYANHPVDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLP-YHDNAY 101 (196)
Q Consensus 41 g~~~g~~~~~~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~-~h~~s~ 101 (196)
..++|+++ ++.+|++|+||.||||+++|+.++++.+ ..|++++..+|+. .|+.+.
T Consensus 99 ~i~~g~~~---~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~ 154 (232)
T PRK10877 99 MIVYKAPQ---EKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAE 154 (232)
T ss_pred cEEecCCC---CCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHH
Confidence 45667754 9999999999999999999999987755 2488888888874 355443
No 16
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=99.33 E-value=2.2e-11 Score=96.90 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=90.8
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCC---------------------------------------C
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPL---------------------------------------P 95 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl---------------------------------------~ 95 (196)
+|+.|+|+.||||+-..+.++++++++ ++++++|+|-| +
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~--~v~i~~~P~~L~~~~~~~g~~~~~~~~~k~~~~~~~~~~~a~~~Gl~~~~~ 79 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAW--NVDITYVPVFLGGIMKDSGNKPPIMLPNKAKYMAKDRKRSAEFFGVPIRQP 79 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHh--CCeEEEEeeehhHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCC
Confidence 689999999999999999999988764 47777777532 0
Q ss_pred --CC---cChHHHHHHHHHHHhcCCc----cHHHHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCc--hHH
Q 029265 96 --YH---DNAYATSRALHIVNRTNSS----ATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSY--SSA 164 (196)
Q Consensus 96 --~h---~~s~~aa~a~~a~~~~~~~----~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~--~~~ 164 (196)
++ .++..+++.+.++...+.+ ....+.++.|+.-..+.. .....+.|.++|.+ +|++. .++
T Consensus 80 ~~~~~~~~nt~~a~rl~~~a~~~~~~~~~~~~~~l~~a~f~~g~~i~~-------~~~l~~vL~~~a~~-~Gld~~~~~~ 151 (209)
T cd03021 80 KDFFFMKKGTLTAQRFLTAISEQHPESTLTALEALFREFWVRPWSLTE-------PITESQSISVAADK-LGGSAEQAEK 151 (209)
T ss_pred CCCcccCcccHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhccCCC-------chhhHHHHHHHHHH-cCCCcccHHH
Confidence 11 4566777777766655433 233344444433222211 12334567889999 99973 245
Q ss_pred HhhccCCchhhHHHHHHHHHHhccCcccccCC
Q 029265 165 LESGFSDRSTDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 165 ~~~~~~~~~~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
+.+...+..+...++.+.+.+.++||+|.|+|
T Consensus 152 ~l~~~~~~~~~~~l~~~~~~A~~~Gv~GVP~f 183 (209)
T cd03021 152 LLKAASTPEVKNRLKENTDEALKYGAFGLPWI 183 (209)
T ss_pred HHHHccCHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 55544677888999999999999999999997
No 17
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.1e-10 Score=86.68 Aligned_cols=132 Identities=20% Similarity=0.329 Sum_probs=98.5
Q ss_pred eEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe---c-----CC---------------------C---------
Q 029265 54 IIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL---L-----PL---------------------P--------- 95 (196)
Q Consensus 54 vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~---~-----pl---------------------~--------- 95 (196)
++|.+.+||.|.||+.+.|.++++... .-++|++|. + |+ |
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~~--~gl~~~L~~GGl~aG~r~pl~~~~r~~i~~hd~rIa~lTGqpFg~~y~~~l 79 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSAQ--PGLEVVLHGGGLRAGNRRPLDPAFRAYILPHDQRIAQLTGQPFGQAYFDGL 79 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHhc--CCceEEEecCCccCCCCCCCChHHHHHhhhhHHHHHHHhCCccchhHHhhh
Confidence 589999999999999999999988763 247777762 1 11 1
Q ss_pred -----CCcChHHHHHHHHHHHhcCCccHHHHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccC
Q 029265 96 -----YHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFS 170 (196)
Q Consensus 96 -----~h~~s~~aa~a~~a~~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~ 170 (196)
+-.+|..+++|..++..++...-++++++| |..++-++ .+.++. +.+.+++.+ .|++. +.|.+.+.
T Consensus 80 L~~~~~v~DSepa~~ai~aA~~l~~r~~l~ml~aI---QrA~YvEG-rdi~~t---~vl~~laa~-~GL~~-~~f~~~f~ 150 (212)
T COG3531 80 LRDTGFVYDSEPACRAILAARLLDGRGRLTMLHAI---QRAHYVEG-RDITQT---EVLAELAAA-IGLAA-EEFDNAFD 150 (212)
T ss_pred hcccCccccccHHHHHHHHHHHhCcccchHHHHHH---HHHHHhcc-ccchhh---HHHHHHHHH-cCCCH-HHHHHhcc
Confidence 235777889999988888766656777765 66777665 355554 467788889 99995 99988887
Q ss_pred -CchhhHHHHHH-HHHHhccCcccccCC
Q 029265 171 -DRSTDLLTRVS-FKVTQKFFSFNTSFF 196 (196)
Q Consensus 171 -~~~~~~~~r~~-~k~a~~~GV~GTPtF 196 (196)
+.........+ +...+++|+.|.|||
T Consensus 151 ~s~~~~~~~~a~~r~l~~rlg~~GfPTl 178 (212)
T COG3531 151 QSGAARQAHIADSRRLMQRLGAAGFPTL 178 (212)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 44444555555 788999999999997
No 18
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.09 E-value=3.8e-09 Score=80.70 Aligned_cols=135 Identities=24% Similarity=0.283 Sum_probs=99.0
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe-----------cCC--------------------------
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL-----------LPL-------------------------- 94 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~-----------~pl-------------------------- 94 (196)
.+.+|+.|+|+..|+.+-+|+.++.+.++|.-.|.++-.. .|+
T Consensus 6 ~~ktIef~fdf~SP~ayL~~~~~~~laq~~ga~v~~rP~llg~vfk~tG~~~Pl~~~~~~~dY~~~d~~R~akr~Glp~~ 85 (203)
T COG3917 6 MNKTIEFYFDFSSPYAYLAWPRLPALAQAYGAAVALRPILLGGVFKATGNGVPLIKTPQPGDYITLDLKREAKRHGLPLR 85 (203)
T ss_pred CCceeEEEEecCCchHHhhhhhhHHHHHHcCCceEEEeeeeceeEeecCCCCcccccCCCCceehHHHHHHHHHcCCccc
Confidence 5679999999999999999999999999986544433211 111
Q ss_pred -CCC--cChHHHHHHHHHHHhcCCccHHHHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCC
Q 029265 95 -PYH--DNAYATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 171 (196)
Q Consensus 95 -~~h--~~s~~aa~a~~a~~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~ 171 (196)
+-| .+...++++..++. .+-+.+.+|.+++|..- |.+ . .+++.. +.+..+|.. +|+|. .++.....|
T Consensus 86 f~~~fp~nt~~~~R~~~~~~-~~g~~a~~~~~a~lrAl--w~d-~-~~l~ep---ev~~~vA~~-aGlDg-~al~A~~gd 155 (203)
T COG3917 86 FPRHFPPNTLGAARAMIALA-MGGGLAEQFAEAVLRAL--WAD-G-QNLGEP---EVVYAVANA-AGLDG-AALLALLGD 155 (203)
T ss_pred cCCCCCCchHHHHHHHHHHH-hccchHHHHHHHHHHHH--hhc-c-cccCCh---HHHHHHHHH-cCCCH-HHHHhhcCC
Confidence 112 45567778777653 34456777777776431 211 1 133443 357778888 99997 999999999
Q ss_pred chhhHHHHHHHHHHhccCcccccCC
Q 029265 172 RSTDLLTRVSFKVTQKFFSFNTSFF 196 (196)
Q Consensus 172 ~~~~~~~r~~~k~a~~~GV~GTPtF 196 (196)
.+++.....+...+.++||.|+|||
T Consensus 156 ~eik~~l~a~~~~a~srGvfGaPtf 180 (203)
T COG3917 156 DEIKARLKANTAEAVSRGVFGAPTF 180 (203)
T ss_pred HHHHHHHHhhHHHHHhcCccCCCeE
Confidence 9999999999999999999999997
No 19
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.54 E-value=7.9e-05 Score=52.78 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCChhhhhhchHHHH
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQ 76 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~ 76 (196)
++.+|++|+|+.||+|+++++.+.+
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHH
Confidence 7889999999999999999999985
No 20
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.92 E-value=0.0018 Score=42.94 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=33.2
Q ss_pred eEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 54 IIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 54 vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|.|+.|....||+|+...+.++++.++|.+++.+...+.
T Consensus 1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~ 39 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINV 39 (82)
T ss_pred CEEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeC
Confidence 578999999999999999999999998877777665543
No 21
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.88 E-value=0.0021 Score=44.18 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=35.6
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
+.|++|..|.++.||+|....+.++++.+.++ ++++..++.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~ 51 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDG 51 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEh
Confidence 37899999999999999999999999988764 688887764
No 22
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.88 E-value=0.0029 Score=43.30 Aligned_cols=41 Identities=24% Similarity=0.483 Sum_probs=35.4
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC--CcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG--PHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~--~~v~~~~~~~ 92 (196)
++++++.|...-||.|.+..|.+.++.++|. +++++++...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~ 43 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSL 43 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEe
Confidence 3689999999999999999999999999998 7899887653
No 23
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=96.62 E-value=0.0056 Score=42.45 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=35.0
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.++.++.|+..-||+|+.+.|.+.++.++|.++++|.-.+
T Consensus 18 ~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd 57 (101)
T cd03003 18 GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVN 57 (101)
T ss_pred CCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEe
Confidence 4789999999999999999999999999998877766554
No 24
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.58 E-value=0.0054 Score=44.01 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=34.2
Q ss_pred CCCeEEEEecCC-CChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 51 SDAIIIEAFFDP-VCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~-~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
+.++.|.-+.++ .||.|..+.|.++++.++|.++++|...+
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVd 68 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVG 68 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEE
Confidence 356666666777 99999999999999999999988877655
No 25
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=96.43 E-value=0.0085 Score=41.68 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=34.5
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.+..++.|+...||+|+.+.|.++++.++|.++++|.-.+
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd 58 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVD 58 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 4578999999999999999999999999987777776544
No 26
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.41 E-value=0.0096 Score=41.07 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=35.6
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.++.++.|....||.|+.+.+.+.++.+++.+++.+.-.+.
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~ 53 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDI 53 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEEC
Confidence 67899999999999999999999999988877777776553
No 27
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.38 E-value=0.0071 Score=38.63 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=30.9
Q ss_pred eEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 54 IIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 54 vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
|+|..|.-..||+|..+.+.++++.+++ ++++|...+
T Consensus 1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id 37 (67)
T cd02973 1 VNIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMID 37 (67)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEE
Confidence 5789999999999999999999887654 468777665
No 28
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=96.36 E-value=0.0092 Score=40.89 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=35.2
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.+..|+.|+...||+|+.+.|.+.++.+++.+++.|...+.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~ 57 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDC 57 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEET
T ss_pred CCCEEEEEeCCCCCccccccceecccccccccccccchhhh
Confidence 56789999999999999999999999999887777776553
No 29
>PRK09381 trxA thioredoxin; Provisional
Probab=96.33 E-value=0.011 Score=41.61 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=35.0
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.+..|+.|+-.-||.|+.+.|.++++.++|.+++.|...+.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~ 61 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 61 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEEC
Confidence 45689999999999999999999999999988777766543
No 30
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.29 E-value=0.0074 Score=43.93 Aligned_cols=39 Identities=10% Similarity=0.013 Sum_probs=32.0
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.+..|+.|+-..||+|+.+.|.++++.++ .++++.+.+.
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdv 61 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDS 61 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEEC
Confidence 45679999999999999999999999987 3456666553
No 31
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.20 E-value=0.012 Score=43.90 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=36.1
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.+..|+.|+-.-|++|+.+.|.+.++.++|.++++|+....
T Consensus 20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~v 60 (142)
T cd02950 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNV 60 (142)
T ss_pred CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEc
Confidence 56899999999999999999999999999987888877654
No 32
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.18 E-value=0.022 Score=43.19 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=34.1
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~~ 91 (196)
.+..|+.|+-..||.|+.+.|.++++.++|.+ +++|.-.+
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VD 87 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKID 87 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEE
Confidence 46789999999999999999999999998874 57777655
No 33
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=96.13 E-value=0.015 Score=40.61 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=33.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.+..++.|+...|++|+.+.|.+.++.+++.+++.|...+
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~ 57 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVD 57 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEe
Confidence 4568999999999999999999999998887777666543
No 34
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.05 E-value=0.011 Score=39.21 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=29.3
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
+|..|. ..||.|+.+.+.+++++++++.+++++-.+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT 37 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 355555 999999999999999999998777776543
No 35
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=96.02 E-value=0.087 Score=39.86 Aligned_cols=41 Identities=12% Similarity=0.271 Sum_probs=34.5
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEEe
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~~ 91 (196)
.++.+++.|....||.|+...+.+.++.++|.+ +++++...
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~ 101 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVN 101 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 367899999999999999999999999998875 47777654
No 36
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=95.98 E-value=0.015 Score=40.15 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=35.6
Q ss_pred CeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 53 ~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
...++.|.+..|+.|..+.+.++++.++|.++++|...+
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd 51 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVD 51 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEc
Confidence 568889999999999999999999999999999999865
No 37
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=95.95 E-value=0.022 Score=41.01 Aligned_cols=41 Identities=7% Similarity=0.019 Sum_probs=36.3
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.+++|+.|.-.-||.|+.+.|.++++.++|.+.++|...+.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDv 54 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDI 54 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEEC
Confidence 56899999999999999999999999999988888776553
No 38
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=95.90 E-value=0.016 Score=40.85 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=32.9
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVV 89 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~ 89 (196)
++.+|+.|...-||.|+...|.++++.++|.+++.++.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~ 58 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVL 58 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEE
Confidence 67889999999999999999999998887877777764
No 39
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=95.83 E-value=0.026 Score=40.52 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=35.5
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
+.++.++.|+-+-|++|+.+.|.++++.++|.+++.|.-.+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd 68 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAIN 68 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 36889999999999999999999999999998877765444
No 40
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=95.79 E-value=0.026 Score=38.60 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=33.4
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC--cEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP--HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~--~v~~~~~~ 91 (196)
.++.|+.|.+..|+.|+.+.+.+.++.+.+.+ ++.+...+
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d 54 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVD 54 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEE
Confidence 57899999999999999999999998887765 56666544
No 41
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=95.79 E-value=0.026 Score=38.83 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=33.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.+..|+.|+...|++|+.+.|.+.++.+++.+++.|...+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id 57 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVD 57 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEE
Confidence 4568888889999999999999999998888777777654
No 42
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=95.78 E-value=0.031 Score=38.15 Aligned_cols=40 Identities=20% Similarity=0.381 Sum_probs=33.7
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.+..++.|+-.-|+.|+.+.|.+.++.++|.+++.+.-.+
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd 51 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVN 51 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEe
Confidence 5689999999999999999999999999888766555443
No 43
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.69 E-value=0.03 Score=38.04 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=35.0
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.+..++.|+...|+.|+.+.+.+.++.+++.+++.|...+.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~ 54 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNV 54 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEEC
Confidence 45788889999999999999999999988887888887653
No 44
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=95.59 E-value=0.069 Score=43.06 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=33.0
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVV 89 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~ 89 (196)
.+..++.|+-+-||+|+.+.|.++++.++|.++++|.-
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~ 89 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVAD 89 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 35679999999999999999999999999888776654
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=95.56 E-value=0.036 Score=37.33 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=32.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhc--CCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHY--GPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y--~~~v~~~~~~ 91 (196)
.+..++.|....|+.|+.+.+.+.++.+.+ .+++.|...+
T Consensus 15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~ 56 (101)
T cd02961 15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVD 56 (101)
T ss_pred CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEee
Confidence 347899999999999999999999988887 4667766543
No 46
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=95.52 E-value=0.034 Score=40.39 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=32.3
Q ss_pred CeEEEEecC-------CCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 53 AIIIEAFFD-------PVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 53 ~vtI~~f~D-------~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
+..++.|.- .-||.|+.+.|.++++.++|.++++|+-.+.
T Consensus 22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdv 68 (119)
T cd02952 22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDV 68 (119)
T ss_pred CeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEc
Confidence 445555555 9999999999999999999987788876654
No 47
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=95.41 E-value=0.047 Score=37.48 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=32.5
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC--cEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP--HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~--~v~~~~~~ 91 (196)
.+..++.|+...|++|+.+.+.+.++.+.+.+ ++.+...+
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id 59 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMD 59 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEe
Confidence 36788999999999999999999999988765 45555444
No 48
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=95.40 E-value=0.034 Score=39.76 Aligned_cols=39 Identities=8% Similarity=-0.001 Sum_probs=32.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.+..++.|+.+.||.|+.+.|.++++.++|++ ++|.-.+
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd 60 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVN 60 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEE
Confidence 45789999999999999999999999998864 6665444
No 49
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=95.34 E-value=0.04 Score=39.36 Aligned_cols=40 Identities=10% Similarity=0.075 Sum_probs=31.5
Q ss_pred CCeEEEEe-cCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAF-FDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f-~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.++.+++| +-..||+|+.+.+.++++.+++ ++++|...+.
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~ 61 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDF 61 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeC
Confidence 45666666 4579999999999999998877 6788877654
No 50
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=95.32 E-value=0.047 Score=38.47 Aligned_cols=40 Identities=10% Similarity=0.231 Sum_probs=33.3
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~~ 91 (196)
.+.+|+.|+-.-||+|+.+.|.+.++.++|.+ ++.+...+
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd 61 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFN 61 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEE
Confidence 57899999999999999999999999888875 36665443
No 51
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=95.20 E-value=0.051 Score=37.97 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=33.6
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.++.|+.|+-.-|+.|+.+.|.+.++.++| +++.|.-.+
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd 53 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVN 53 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEE
Confidence 578999999999999999999999999998 667666544
No 52
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=95.17 E-value=0.034 Score=38.80 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=31.1
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLV 88 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~ 88 (196)
.++.++.|+-.-||+|+.+.|.++++.++|.+ +.+.
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~ 53 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHL 53 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceE
Confidence 67899999999999999999999999988864 4443
No 53
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.16 E-value=0.048 Score=38.74 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=31.7
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVV 89 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~ 89 (196)
.+..|+.|+.+.|+.|+.+.|.++++.++|. +++|.-
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~ 60 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVK 60 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEE
Confidence 3678999999999999999999999999986 466553
No 54
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.12 E-value=0.066 Score=37.26 Aligned_cols=40 Identities=8% Similarity=0.197 Sum_probs=33.5
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~~ 91 (196)
.+..|+.|+-.-||.|+.+.|.++++.++|.+ .++|...+
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd 57 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAE 57 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEe
Confidence 56799999999999999999999999888874 46666544
No 55
>PHA02278 thioredoxin-like protein
Probab=94.94 E-value=0.061 Score=37.94 Aligned_cols=41 Identities=7% Similarity=-0.047 Sum_probs=33.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.+.+|+.|+-.-|+.|+.+.|.++++.+++.++++|...+.
T Consensus 14 ~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdv 54 (103)
T PHA02278 14 KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNL 54 (103)
T ss_pred CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEEC
Confidence 56789999999999999999999999887655666665543
No 56
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=94.91 E-value=0.12 Score=42.35 Aligned_cols=42 Identities=21% Similarity=0.133 Sum_probs=34.7
Q ss_pred CCCCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 49 VDSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 49 ~~~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
++++|+.|.......||+|+.-...|--.+.+|+ ++.+.++.
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG-n~~l~~~~ 96 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFG-NFSLEYHY 96 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcC-CeeeEEee
Confidence 3568999999999999999999888887888885 55777664
No 57
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.90 E-value=0.035 Score=37.38 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=30.5
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.|++|.-..||+|++..+.|+++..++ ..+.+..++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi 38 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDI 38 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEEC
Confidence 688999999999999999999887765 4577776654
No 58
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.88 E-value=0.048 Score=43.39 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=31.7
Q ss_pred CCeEEEEecC---CCChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 52 DAIIIEAFFD---PVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D---~~CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
.+++|..|.+ .-||+|+.+.|.++++.++|. ++++.+.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~~~i~~v 59 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-KLKLEIY 59 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-CceEEEE
Confidence 5688999999 899999999999999998884 5555443
No 59
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=94.83 E-value=0.056 Score=38.34 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=32.4
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVV 89 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~ 89 (196)
.+..|+.|+-+.||.|+.+.|.+.++.+++.+ ++.+.-
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~ 62 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIAT 62 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEE
Confidence 57899999999999999999999999998865 465543
No 60
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=94.69 E-value=0.088 Score=36.13 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=31.4
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC--CcEEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG--PHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~--~~v~~~~~ 90 (196)
.+..++.|+..-||.|+.+.+.+.++.+++. +.+.+...
T Consensus 17 ~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~i 57 (104)
T cd02997 17 EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAV 57 (104)
T ss_pred CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEE
Confidence 3478999999999999999999999888776 44555443
No 61
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=94.62 E-value=0.11 Score=35.57 Aligned_cols=40 Identities=13% Similarity=0.299 Sum_probs=32.2
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC--CcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG--PHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~--~~v~~~~~~ 91 (196)
.+..++.|...-||+|+.+.+.+.++.+++. +++.+.-.+
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id 59 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVD 59 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEE
Confidence 4568999999999999999999999988876 456655444
No 62
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=94.59 E-value=0.1 Score=36.45 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=26.6
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhc
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHY 81 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y 81 (196)
.+..++.|+-+.|++|+.+.|.+.++.+++
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~ 47 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKI 47 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHH
Confidence 467899999999999999999999887764
No 63
>PTZ00102 disulphide isomerase; Provisional
Probab=94.57 E-value=0.21 Score=44.15 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC---CcEEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG---PHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~---~~v~~~~~ 90 (196)
.+..++.|+.+-||+|+++.|.+.++.+.+. +++.|.-.
T Consensus 49 ~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~v 90 (477)
T PTZ00102 49 NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASV 90 (477)
T ss_pred CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEE
Confidence 5689999999999999999999887765542 35655543
No 64
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=94.54 E-value=0.098 Score=34.31 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=31.8
Q ss_pred CeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 53 ~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
+..|+.|+...|++|..+.+.++++.++ .+++.+...+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~ 48 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVD 48 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEE
Confidence 6789999999999999999999998887 5567766554
No 65
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.49 E-value=0.31 Score=44.09 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=36.1
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcC-CcEEEEEEec
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYG-PHVSLVVHLL 92 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~-~~v~~~~~~~ 92 (196)
.++++|+.|.-.-||.|++..|.+.++.++|. +++.|+....
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~ 97 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVAS 97 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEec
Confidence 46889999999999999999999999999886 4688776654
No 66
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=94.49 E-value=0.088 Score=36.03 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=31.3
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCC---cEEEEEEe
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGP---HVSLVVHL 91 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~---~v~~~~~~ 91 (196)
.++.|+..-|++|+.+.|.+.++.+++.+ ++.|...+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd 58 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVD 58 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEE
Confidence 89999999999999999999999888865 56666544
No 67
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=94.44 E-value=0.082 Score=36.69 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=30.7
Q ss_pred CCeEEEEecCCCChhhhhhchHH---HHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPL---KQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l---~~~~~~y~~~v~~~~~~ 91 (196)
.+..|+.|+-..||+|+.+.+.+ .++.+.+.+++.+...+
T Consensus 11 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd 53 (104)
T cd02953 11 GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRAD 53 (104)
T ss_pred CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEe
Confidence 46789999999999999999877 45666666566666544
No 68
>PTZ00051 thioredoxin; Provisional
Probab=94.36 E-value=0.12 Score=35.28 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=32.0
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.+..++.|+...|+.|+.+.+.++++.+++. +++|...+
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd 56 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVD 56 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEE
Confidence 5688999999999999999999999888765 46655443
No 69
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=94.28 E-value=0.13 Score=35.75 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=27.7
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~ 82 (196)
.+..++.|+-.-||+|+.+.|.++++.++|.
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~ 45 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELK 45 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHHH
Confidence 3578999999999999999999999988874
No 70
>PRK10996 thioredoxin 2; Provisional
Probab=94.28 E-value=0.12 Score=38.20 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=34.2
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.+..++.|+-..||.|+.+.+.+.++.+++.+++.|.-.+
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd 91 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVN 91 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 6788999999999999999999999988887777765543
No 71
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=94.17 E-value=0.082 Score=38.03 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=27.8
Q ss_pred CeEEEEecCCCChhhhhhchHHH---HHHHhcCCcEEEEEE
Q 029265 53 AIIIEAFFDPVCPDSRDAWPPLK---QALQHYGPHVSLVVH 90 (196)
Q Consensus 53 ~vtI~~f~D~~CP~C~~~~~~l~---~~~~~y~~~v~~~~~ 90 (196)
+.+++.|...-||+|+++.+.+. .+.+.+.+++.++..
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i 55 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYI 55 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEE
Confidence 78999999999999999998774 344444445554443
No 72
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=94.14 E-value=0.086 Score=37.45 Aligned_cols=40 Identities=18% Similarity=0.413 Sum_probs=30.5
Q ss_pred eEEEEecCCCChhhhhhc-hHHHHHH--HhcCCcEEEEEEecC
Q 029265 54 IIIEAFFDPVCPDSRDAW-PPLKQAL--QHYGPHVSLVVHLLP 93 (196)
Q Consensus 54 vtI~~f~D~~CP~C~~~~-~~l~~~~--~~y~~~v~~~~~~~p 93 (196)
|.|.+|+.=.||+|++|- ..|..++ ++..+.++|.++++-
T Consensus 1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G 43 (108)
T PF03227_consen 1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFG 43 (108)
T ss_pred CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEe
Confidence 578999999999999995 4566644 455677888877653
No 73
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.14 E-value=0.092 Score=41.76 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=32.8
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
+.+++|+.|+...||+|..+.+.++++..++ +++.+...+
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD 171 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIE 171 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEe
Confidence 4788999999999999999999888877764 577776544
No 74
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=94.10 E-value=0.65 Score=35.95 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=30.2
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
..+++|+.|...-||.|++..|.+.++.++ .++++...
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~ 104 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMN 104 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEE
Confidence 478899999999999999999999887542 46665543
No 75
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=94.10 E-value=0.15 Score=34.64 Aligned_cols=39 Identities=10% Similarity=0.203 Sum_probs=33.0
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
.+..++.|+-..|+.|+.+.+.++++.+++.+++.+.-.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~v 52 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSI 52 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEE
Confidence 478899999999999999999999998886556766654
No 76
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.095 Score=43.76 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=35.9
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
...-.|+.|.-+.|+.|+.+-|.++++..+|.|++.+...+
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN 82 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVN 82 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEec
Confidence 35557889999999999999999999999999988887754
No 77
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=93.92 E-value=0.16 Score=34.68 Aligned_cols=41 Identities=22% Similarity=0.448 Sum_probs=34.4
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC-CcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG-PHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~-~~v~~~~~~~ 92 (196)
.+.+|+.|....||+|....+.+.++.+++. ++++++....
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~ 60 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNV 60 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEEC
Confidence 5789999999999999999999999988876 5677776543
No 78
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=93.64 E-value=0.37 Score=34.61 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=34.4
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~~ 91 (196)
++++|+.|.-.-||.|.+..|.+.++.++|.+ ++.++...
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~ 63 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVH 63 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEec
Confidence 67899999999999999999999999999874 57766554
No 79
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=93.62 E-value=0.4 Score=36.30 Aligned_cols=31 Identities=29% Similarity=0.566 Sum_probs=27.7
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~ 82 (196)
+..+|+.|.-.-||.|++..|.+.++.++|.
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~ 80 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG 80 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC
Confidence 4556999999999999999999999999884
No 80
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.58 E-value=0.13 Score=30.58 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=27.4
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
|+.|....||+|.+..+.+.++ +...+++.+....
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~ 35 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVD 35 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEE
Confidence 4678899999999999999987 4334567777665
No 81
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=93.32 E-value=0.25 Score=36.95 Aligned_cols=40 Identities=5% Similarity=-0.064 Sum_probs=35.1
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.++.|+.|+---||.|+.+.|.++++.++|.+.+.|.-.+
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVD 62 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVD 62 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEE
Confidence 5789999999999999999999999999988777766554
No 82
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=93.19 E-value=0.21 Score=38.97 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=24.9
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcC
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYG 82 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~ 82 (196)
++.|.---||+|+++.|.++++.++|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g 99 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG 99 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC
Confidence 888999999999999999999999884
No 83
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=92.92 E-value=0.24 Score=35.76 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC---cEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP---HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~---~v~~~~~~ 91 (196)
.+++|+.|...-||.|++..|.+.++.+++.+ ++++++..
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is 60 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEE
Confidence 57889999999999999999999988887652 56666543
No 84
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=92.84 E-value=0.29 Score=37.85 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=32.9
Q ss_pred CeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 53 ~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
...|+.|+...||.|+.+.|.+.++.++|+ .++|+-.+
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd 121 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIR 121 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEe
Confidence 478899999999999999999999999986 57776554
No 85
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=0.26 Score=34.99 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=34.5
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.++.|+.|+-.-|+-|+...|.+.++.++|.+ +.|.-.+
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvd 59 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVD 59 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEe
Confidence 58899999999999999999999999999987 7666544
No 86
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=92.74 E-value=0.27 Score=35.68 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=33.3
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC---cEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP---HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~---~v~~~~~~ 91 (196)
+++.|+.|.-.-||.|....|.+.++.++|.+ ++.+++..
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs 59 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVS 59 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 57899999999999999999999998887764 46666543
No 87
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=92.73 E-value=0.22 Score=36.57 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=31.8
Q ss_pred CCeEEEEecCC-CChhhhhhchHHHHHHHhcCC-cEEEEEEe
Q 029265 52 DAIIIEAFFDP-VCPDSRDAWPPLKQALQHYGP-HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~-~CP~C~~~~~~l~~~~~~y~~-~v~~~~~~ 91 (196)
.+++|+.|+-- -||.|....|.+.++.++|.+ .++++...
T Consensus 28 gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~ 69 (146)
T PF08534_consen 28 GKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVS 69 (146)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEec
Confidence 56667777766 999999999999999888764 58887764
No 88
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=92.49 E-value=0.21 Score=32.84 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=27.1
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
+|.. +...||+|....+.++++++++. +++.+..
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~ 35 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELG--IEVEIID 35 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTT--EEEEEEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcC--CeEEEEE
Confidence 5666 67779999999999999998873 7776655
No 89
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=92.40 E-value=0.3 Score=34.54 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=32.7
Q ss_pred CCeEEEEecCC-CChhhhhhchHHHHHHHhcC-CcEEEEEEe
Q 029265 52 DAIIIEAFFDP-VCPDSRDAWPPLKQALQHYG-PHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~-~CP~C~~~~~~l~~~~~~y~-~~v~~~~~~ 91 (196)
++.+|+.|+.. .||+|....+.+.++.++|. .+++++...
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is 66 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIS 66 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecc
Confidence 46777777777 99999999999999998876 368887654
No 90
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.22 Score=39.98 Aligned_cols=41 Identities=15% Similarity=0.341 Sum_probs=32.9
Q ss_pred CCeEEEEecCCCChhhhhhc-hHHHHHHHh-cCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAW-PPLKQALQH-YGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~-~~l~~~~~~-y~~~v~~~~~~~ 92 (196)
.+|.|..|+.=+||+|.+|- ..+.++.+. ..+.+++.+++|
T Consensus 39 ~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPf 81 (220)
T KOG3160|consen 39 PKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPF 81 (220)
T ss_pred CeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEcc
Confidence 48999999999999999997 457777665 357788887754
No 91
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=92.34 E-value=0.23 Score=37.70 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=33.9
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC-CcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG-PHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~-~~v~~~~~~ 91 (196)
.+++|+.|....||.|....+.+.++.++|. .+++|+-..
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is 65 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAIN 65 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEe
Confidence 6789999999999999999999999999887 467766543
No 92
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=92.25 E-value=0.32 Score=33.33 Aligned_cols=36 Identities=14% Similarity=0.338 Sum_probs=29.0
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEE
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~ 90 (196)
.|+.|+-.-||+|+.+.|.+.++.+++.+ ++.|.-.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~v 55 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKV 55 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEE
Confidence 58999999999999999999998876643 4555543
No 93
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=92.25 E-value=0.4 Score=32.25 Aligned_cols=42 Identities=26% Similarity=0.521 Sum_probs=33.4
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecC
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLP 93 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~p 93 (196)
.++.++.|+-..||+|....|.+.++.+++...+.++..+.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~ 73 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVD 73 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECC
Confidence 345666667999999999999999999988766777766554
No 94
>PF13728 TraF: F plasmid transfer operon protein
Probab=92.11 E-value=0.24 Score=39.67 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=30.9
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLV 88 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~ 88 (196)
...-|+.|++-.||+|..+.|.+..+.++|+=.|..+
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~v 156 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPV 156 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEE
Confidence 5677999999999999999999999999986333333
No 95
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.88 E-value=0.21 Score=36.21 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=25.5
Q ss_pred CChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 63 VCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 63 ~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
=||+|.+++|.+.+.+++.+.++.|+...
T Consensus 44 WCPdCV~AEPvi~~alk~ap~~~~~v~v~ 72 (128)
T KOG3425|consen 44 WCPDCVAAEPVINEALKHAPEDVHFVHVY 72 (128)
T ss_pred CCchHHHhhHHHHHHHHhCCCceEEEEEE
Confidence 49999999999999999888888888754
No 96
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=91.81 E-value=0.46 Score=33.84 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=30.6
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC---CcEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG---PHVSLVV 89 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~---~~v~~~~ 89 (196)
.+..++.|+..-||.|+.+.+.++++.+++. +.+.|..
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~ 59 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAA 59 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEE
Confidence 3689999999999999999999998877653 3465543
No 97
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=91.75 E-value=0.34 Score=43.20 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=34.5
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCc-EEEEEEe
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH-VSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~-v~~~~~~ 91 (196)
..+..|+.|+-+-||+|+.+.|.++++.++|.++ ++|...+
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVd 411 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFR 411 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEE
Confidence 3667999999999999999999999999998764 6666544
No 98
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=91.72 E-value=0.33 Score=35.32 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=34.5
Q ss_pred CCeEEEEecCCCChh-hhhhchHHHHHHHhcCC----cEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPD-SRDAWPPLKQALQHYGP----HVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~-C~~~~~~l~~~~~~y~~----~v~~~~~~~ 92 (196)
++.+|+.|....||. |....+.+.++.++|.+ +++++....
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~ 67 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV 67 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE
Confidence 678999999999997 99999999999888864 488776643
No 99
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=91.70 E-value=0.58 Score=33.69 Aligned_cols=41 Identities=7% Similarity=-0.036 Sum_probs=34.6
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
+.++.|+-|+.--||-|+.+.|.++++.++|.+.+.|.-.+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVD 53 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVD 53 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEe
Confidence 36899999999999999999999999999987556555444
No 100
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=91.53 E-value=0.44 Score=34.11 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=30.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
++.+|+.|...-||.|....|.+.++.+++ ++.|+..
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v 61 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGI 61 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEE
Confidence 678999999999999999999999987765 3666644
No 101
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=1 Score=34.27 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCCCeEEEEecCCCChhhhhhchHHHH--HHHhcC-CcEEEEEE
Q 029265 50 DSDAIIIEAFFDPVCPDSRDAWPPLKQ--ALQHYG-PHVSLVVH 90 (196)
Q Consensus 50 ~~a~vtI~~f~D~~CP~C~~~~~~l~~--~~~~y~-~~v~~~~~ 90 (196)
+..+--+.+|....|++|.++-..++. =+++|- +.+.++..
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l 83 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYL 83 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEE
Confidence 457889999999999999999887753 233443 44555544
No 102
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=90.35 E-value=0.52 Score=37.02 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=32.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
....|+.|+...||.|+.+.+.+.++.++|. .++|+-.+
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ 140 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKII 140 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEE
Confidence 3567888999999999999999999999986 57776543
No 103
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=90.27 E-value=0.31 Score=32.92 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=26.1
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
|++|.-..||+|.+....|.++..++. .+.++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~id 36 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYID 36 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEE
Confidence 678999999999999999887654432 35566554
No 104
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=0.34 Score=43.43 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=30.4
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCc
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH 84 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~ 84 (196)
..+=.+++|+=+-|+||+++.|.+++|.++|.+.
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC
Confidence 3667899999999999999999999999998753
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=89.97 E-value=0.65 Score=36.15 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=30.4
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
.++.+|+.|.-.-||.|++..|.+.++.+++. +++++.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~I 110 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMI 110 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEE
Confidence 46889999999999999999999998877653 444443
No 106
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=89.71 E-value=0.49 Score=34.32 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=24.3
Q ss_pred CCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 62 PVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 62 ~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.=||+|...+|.+++.+++.+++.+|++..
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~ 65 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVE 65 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 459999999999999888766778887654
No 107
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=89.62 E-value=0.58 Score=38.76 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=30.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
.+..|+.|+.--||+|+.+.|.+.++.++|+ ++++..
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~V 202 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPV 202 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEE
Confidence 5678999999999999999999999999885 444433
No 108
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=89.48 E-value=0.64 Score=34.65 Aligned_cols=38 Identities=8% Similarity=0.185 Sum_probs=32.1
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~ 90 (196)
+++.|+.|...-|| |.+-.|.+.++.++|.+ .+.++-.
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v 60 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGF 60 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEe
Confidence 67899999999999 99999999999999863 4666544
No 109
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=89.44 E-value=0.75 Score=40.16 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=34.9
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCC---cEEEEEEec
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP---HVSLVVHLL 92 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~---~v~~~~~~~ 92 (196)
..+.+++.|...-|++|+.+.|.++++.+.+.+ +++|...+.
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~ 407 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDA 407 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEEC
Confidence 367789999999999999999999999988776 677665543
No 110
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=89.41 E-value=0.51 Score=38.65 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=28.3
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~ 82 (196)
...-|+.|++-.||+|..+.|.++.+.++|+
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg 173 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG 173 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC
Confidence 3467999999999999999999999999986
No 111
>PLN02412 probable glutathione peroxidase
Probab=89.40 E-value=0.52 Score=35.91 Aligned_cols=40 Identities=8% Similarity=0.196 Sum_probs=33.0
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~~ 91 (196)
+++.|+.|....||.|.+-.+.+.++.++|.+ .+.++-..
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~ 69 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFP 69 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEec
Confidence 67899999999999999999999999999875 36555443
No 112
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=89.22 E-value=0.28 Score=31.60 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=19.0
Q ss_pred EEEEecCCCChhhhhhchHHHH
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQ 76 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~ 76 (196)
+|+.|.-..||+|++..+.+.+
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~ 22 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDK 22 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHH
Confidence 5789999999999998887764
No 113
>PLN02309 5'-adenylylsulfate reductase
Probab=89.18 E-value=0.85 Score=40.66 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=33.6
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEE
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~ 90 (196)
..+.+|+.|+-+-||+|+.+.|.++++.++|.+ +|.|.-.
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kV 404 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKF 404 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 467899999999999999999999999998865 3665543
No 114
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=89.15 E-value=0.67 Score=33.25 Aligned_cols=40 Identities=8% Similarity=0.079 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.+..++.|.-.-|++|+.+.+.+.+..+.+..+.+|+...
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~ 58 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVN 58 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEE
Confidence 4567888888999999999999887655433344555443
No 115
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=88.79 E-value=0.42 Score=29.64 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=23.8
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|++|.-..||+|.+....|+ +. ++++.+++.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~----~~--~i~y~~~dv 31 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD----EK--GIPYEEVDV 31 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH----HT--TBEEEEEEG
T ss_pred cEEEEcCCCcCHHHHHHHHH----Hc--CCeeeEccc
Confidence 67899999999998776664 33 377777764
No 116
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=88.45 E-value=0.65 Score=38.21 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG 82 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~ 82 (196)
...-++.|+.-.||+|.++.|.++.+.++|+
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg 180 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG 180 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC
Confidence 3477999999999999999999999999987
No 117
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=88.12 E-value=0.31 Score=32.00 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.1
Q ss_pred EEEecCCCChhhhhhchHHHHH
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQA 77 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~ 77 (196)
|+.|.-..||+|.++.+.+.++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~ 22 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKL 22 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHc
Confidence 5789999999999999888764
No 118
>PHA03075 glutaredoxin-like protein; Provisional
Probab=87.95 E-value=1 Score=32.42 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=44.0
Q ss_pred CeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCCCCCcChHHHHHHHHHHHhcCCccHHHHHHHHHhcCh
Q 029265 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLPYHDNAYATSRALHIVNRTNSSATFCLLEWFFKQQE 130 (196)
Q Consensus 53 ~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~~h~~s~~aa~a~~a~~~~~~~~~~~~~~~lf~~q~ 130 (196)
|-||+.|.-|.|+-|...+..++++-++|. -+|+.+.-| +..+. ++..++-++...+.+.++++-+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~-ilrVNIlSf---FsK~g--------~v~~lg~d~~y~lInn~~~~lg 67 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD-ILRVNILSF---FSKDG--------QVKVLGMDKGYTLINNFFKHLG 67 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc-EEEEEeeee---eccCC--------ceEEEecccceehHHHHHHhhc
Confidence 569999999999999999999988888885 444443221 21111 1334455566677777776543
No 119
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=87.80 E-value=0.52 Score=30.47 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=24.0
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
+|++|.-+.||+|++....|++ -.|.+..++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di 33 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLRE------KGLPYVEINI 33 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHH------CCCceEEEEC
Confidence 5789999999999998777664 2366666643
No 120
>PTZ00102 disulphide isomerase; Provisional
Probab=87.51 E-value=0.79 Score=40.47 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=32.9
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCC--cEEEEEEe
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP--HVSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~--~v~~~~~~ 91 (196)
..+..++.|+.+-|++|+.+.|.++++.+++.+ ++.+...+
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id 416 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMN 416 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEE
Confidence 357789999999999999999999998887764 46555443
No 121
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=87.50 E-value=0.91 Score=33.81 Aligned_cols=40 Identities=13% Similarity=0.305 Sum_probs=32.9
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~~ 91 (196)
+++.|+.|.---||.|.+-.|.+.++.++|.+ .+.++-..
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~ 62 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFP 62 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEe
Confidence 56778888889999999999999999999874 57766544
No 122
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.41 E-value=1.3 Score=33.34 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=35.6
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.+..|+.|.-.-|.-|+.+.|.|+++..+|.|+++|.-.+
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvd 100 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVD 100 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEc
Confidence 4557889999999999999999999999999999887654
No 123
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=87.27 E-value=6.1 Score=28.06 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=23.1
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|.+|.-..||+|++....++ +. .+.+.++++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~----~~--gi~~~~idi 32 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLE----EH--QIPFEERNL 32 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHH----HC--CCceEEEec
Confidence 56899999999999766555 32 467777764
No 124
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=87.25 E-value=0.96 Score=33.17 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=27.6
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
.+.+|.++...=||+|+..-|.+.++++.. +++++.+.
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i 78 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRII 78 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEE
Confidence 678999999999999999999999999874 35555543
No 125
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=87.09 E-value=0.49 Score=31.00 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.0
Q ss_pred EEEecCCCChhhhhhchHHHHH
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQA 77 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~ 77 (196)
|+.|.-..||+|.++.+.+.++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~ 23 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKEL 23 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHc
Confidence 6889999999999988887754
No 126
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=86.92 E-value=0.59 Score=29.19 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=22.1
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
|+.|.-..||+|++....+.+. . +++..++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~----~--i~~~~~d 31 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL----G--IEFEEID 31 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----C--CcEEEEE
Confidence 6789999999999988777642 2 5555544
No 127
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=86.75 E-value=0.56 Score=32.66 Aligned_cols=22 Identities=14% Similarity=-0.008 Sum_probs=18.2
Q ss_pred eEEEEecCCCChhhhhhchHHH
Q 029265 54 IIIEAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 54 vtI~~f~D~~CP~C~~~~~~l~ 75 (196)
..|++|.-..||||.+....|.
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~ 29 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLL 29 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHH
Confidence 4588999999999998777554
No 128
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=86.62 E-value=1.5 Score=32.95 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=32.1
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC--------cEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP--------HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~--------~v~~~~~~ 91 (196)
+++.++.|.---||.|+++-|.|.++.+++.+ ++.++...
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs 72 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVS 72 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEE
Confidence 68999999999999999999999987765532 46666553
No 129
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=86.52 E-value=0.96 Score=31.96 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=26.2
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHh
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQH 80 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~ 80 (196)
++.+|+.|+-..||.|....+.+.++.++
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~ 48 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAAD 48 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhh
Confidence 57899999999999999999999988776
No 130
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=86.13 E-value=0.74 Score=29.63 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=22.8
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
+|++|.-..||+|.+....|. ++ ++.+..++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~----~~--~i~~~~~~ 32 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQ----EN--GISYEEIP 32 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHH----Hc--CCCcEEEE
Confidence 588999999999999865555 33 35565554
No 131
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=86.13 E-value=0.62 Score=30.01 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=23.4
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
+|++|.-..||+|.+....|.+ + .+.+..++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~----~--~i~~~~i~i 32 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDK----K--GVDYEEIDV 32 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHH----C--CCcEEEEEC
Confidence 3789999999999997776653 2 366666554
No 132
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=86.04 E-value=0.61 Score=31.18 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=23.0
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.|++|.=..||||++....|.+ ..+.|..++.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~ 33 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDV 33 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHH------cCCCcEEEEe
Confidence 4788999999999998777662 2355565554
No 133
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=85.95 E-value=1.3 Score=31.89 Aligned_cols=39 Identities=5% Similarity=0.157 Sum_probs=30.5
Q ss_pred CCeEEEEec-CCCChhhhhhchHHHHHHHhcC-CcEEEEEE
Q 029265 52 DAIIIEAFF-DPVCPDSRDAWPPLKQALQHYG-PHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~-D~~CP~C~~~~~~l~~~~~~y~-~~v~~~~~ 90 (196)
.+.+|+.|. .--||.|....+.+.++.++|. +.+.|+..
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~i 62 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGV 62 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 566777766 7889999999999999988874 45666654
No 134
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=85.81 E-value=0.76 Score=30.33 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=25.9
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.+..|++|.-..||+|.+....|++ + .|.+..++.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~----~--gi~y~~idi 40 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE----K--GYDFEEIPL 40 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH----c--CCCcEEEEC
Confidence 4567889999999999998777753 2 366666543
No 135
>PRK10329 glutaredoxin-like protein; Provisional
Probab=85.73 E-value=0.81 Score=30.63 Aligned_cols=32 Identities=6% Similarity=0.084 Sum_probs=23.8
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
+|++|.-..||+|++....|++ ..|.|..++.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi 33 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMES------RGFDFEMINV 33 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHH------CCCceEEEEC
Confidence 5889999999999997766643 2466666654
No 136
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.48 E-value=1.1 Score=38.79 Aligned_cols=37 Identities=19% Similarity=0.357 Sum_probs=30.7
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLV 88 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~ 88 (196)
....+++|+.+-|++|+++.|+.+++.+.+.+++.+.
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~ 83 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIG 83 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEE
Confidence 5679999999999999999999998877766644443
No 137
>PHA02125 thioredoxin-like protein
Probab=84.85 E-value=0.92 Score=29.60 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.5
Q ss_pred EEEecCCCChhhhhhchHHHHH
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQA 77 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~ 77 (196)
|+.|+-..||+|+.+.|.++++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH
Confidence 6889999999999999988754
No 138
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=84.83 E-value=1.4 Score=35.77 Aligned_cols=40 Identities=8% Similarity=0.227 Sum_probs=33.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~~ 91 (196)
+++.|+.|.-.-||.|..-.|.|.++.++|.+ .+.++-..
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 67899999999999999999999999999874 36666543
No 139
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=84.83 E-value=0.66 Score=30.38 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=22.6
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|++|.-..||+|.+....+++ + .+.+..++.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~----~--~i~~~~~di 31 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS----K--GVTFTEIRV 31 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH----c--CCCcEEEEe
Confidence 578999999999998877764 2 355555543
No 140
>PRK10638 glutaredoxin 3; Provisional
Probab=84.50 E-value=0.87 Score=30.28 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=23.1
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
+|+.|.-..||+|.+....+.+ . .+.+..++.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~----~--gi~y~~~dv 34 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNS----K--GVSFQEIPI 34 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHH----c--CCCcEEEEC
Confidence 5789999999999998776663 2 355555543
No 141
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=84.37 E-value=2 Score=31.21 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=29.4
Q ss_pred CeEEEEecCCCChhhhhhchHHHHHHHhcC-CcEEEEEEe
Q 029265 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYG-PHVSLVVHL 91 (196)
Q Consensus 53 ~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~-~~v~~~~~~ 91 (196)
++.|..|...-||.|....+.+.++.+++. ..+.++...
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~ 64 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVG 64 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEe
Confidence 444554558999999999999999988875 357776553
No 142
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=84.33 E-value=1.7 Score=39.21 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=29.6
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
+.|+.|.+|.-+.||+|...-+.+.++... .++|.....
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~i 153 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMI 153 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEE
Confidence 478999999999999999988877766553 235555543
No 143
>PHA03050 glutaredoxin; Provisional
Probab=84.10 E-value=0.84 Score=32.39 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=18.5
Q ss_pred EEEEecCCCChhhhhhchHHHH
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQ 76 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~ 76 (196)
.|++|.=..||||++.-..+++
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~ 35 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNK 35 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHH
Confidence 5889999999999987776654
No 144
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.58 E-value=1.8 Score=39.44 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=33.4
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
+.|+.|.+|..+.||+|.+....+.++..+.+ +|......
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~ 514 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMID 514 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEE
Confidence 47899999999999999999999988877643 67776654
No 145
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=82.54 E-value=1 Score=40.90 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHh
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQH 80 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~ 80 (196)
.+-.++||+.--|++|++|.|+.+++.++
T Consensus 57 ~~~~lVEFy~swCGhCr~FAPtfk~~A~d 85 (606)
T KOG1731|consen 57 RKAKLVEFYNSWCGHCRAFAPTFKKFAKD 85 (606)
T ss_pred chhHHHHHHHhhhhhhhhcchHHHHHHHH
Confidence 45678999999999999999999987664
No 146
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=82.12 E-value=1.2 Score=27.86 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=22.4
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|..|.-..||+|++..+.+++ ..+.+..++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi 32 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDV 32 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEec
Confidence 678999999999998766653 2366665543
No 147
>PTZ00062 glutaredoxin; Provisional
Probab=81.53 E-value=2.7 Score=33.42 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=31.1
Q ss_pred CeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 53 AIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 53 ~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
..+|..|...-||.|+.+.+.+.++.++|+ +++|...
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V 54 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVV 54 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEE
Confidence 457888889999999999999999999985 4666554
No 148
>PTZ00056 glutathione peroxidase; Provisional
Probab=81.23 E-value=2.5 Score=33.20 Aligned_cols=39 Identities=5% Similarity=0.219 Sum_probs=32.9
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~ 90 (196)
+++.|+.|.---||.|.+-.|.|.++.++|.+ .+.|+-.
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv 78 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAF 78 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEe
Confidence 57889999999999999999999999999874 4766654
No 149
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=80.61 E-value=2.6 Score=38.02 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=27.9
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEE
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVV 89 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~ 89 (196)
+.|+.|..|.-+.||+|...-..+.++..+. ++|....
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~ 153 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTM 153 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEE
Confidence 4789999999999999998777776655442 2444443
No 150
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=80.53 E-value=1.3 Score=28.61 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=23.0
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|.+|.-..||+|++....|.+ . .+.|..++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~----~--~i~~~~~di 31 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE----H--GIAFEEINI 31 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH----C--CCceEEEEC
Confidence 468899999999998777753 2 467777654
No 151
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=80.23 E-value=8.6 Score=30.02 Aligned_cols=29 Identities=0% Similarity=-0.070 Sum_probs=26.6
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHH
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQ 79 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~ 79 (196)
.+|+.|+.|.=--||.|+.-+|.+.++.+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~ 86 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKA 86 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHH
Confidence 48999999999999999999999998854
No 152
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=79.22 E-value=1.5 Score=30.30 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=15.4
Q ss_pred EEEEecC-----CCChhhhhhchHHHH
Q 029265 55 IIEAFFD-----PVCPDSRDAWPPLKQ 76 (196)
Q Consensus 55 tI~~f~D-----~~CP~C~~~~~~l~~ 76 (196)
.|++|.- +.||||++.-..|.+
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~ 39 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKA 39 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHH
Confidence 4556643 889999987666653
No 153
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=79.09 E-value=2.6 Score=32.09 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
..+.+|+.|.---||.|++..|.+.++.++ ++.++...
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~ 99 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVD 99 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEE
Confidence 367899999999999999999999877653 36666554
No 154
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=78.97 E-value=3.1 Score=30.24 Aligned_cols=38 Identities=5% Similarity=0.141 Sum_probs=28.4
Q ss_pred CCeEEEEecCCC-ChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 52 DAIIIEAFFDPV-CPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~-CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
++.+|+.|.--. ||.|..-.+.+.++.++|. ++.|+-.
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~I 64 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTI 64 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEE
Confidence 456666666544 8999999999999988885 5666644
No 155
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.85 E-value=3.2 Score=35.96 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC--CcEEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG--PHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~--~~v~~~~~ 90 (196)
....+++|+++.|+||+.+.++.+++.+.+. +.|.+...
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~ 202 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKI 202 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEee
Confidence 4557999999999999999999998877553 45555543
No 156
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=78.62 E-value=3.9 Score=35.66 Aligned_cols=38 Identities=18% Similarity=0.477 Sum_probs=29.4
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC---CcEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG---PHVSLVV 89 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~---~~v~~~~ 89 (196)
.++.++.|+..-|++|+.+.|.+.++.+.+. ++|.|.-
T Consensus 18 ~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~ 58 (462)
T TIGR01130 18 HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAK 58 (462)
T ss_pred CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEE
Confidence 4578999999999999999999988766543 2455554
No 157
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=78.25 E-value=3.2 Score=30.26 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=29.5
Q ss_pred CeEEEEec-CCCChhhhhhchHHHHHHHhcC-CcEEEEEE
Q 029265 53 AIIIEAFF-DPVCPDSRDAWPPLKQALQHYG-PHVSLVVH 90 (196)
Q Consensus 53 ~vtI~~f~-D~~CP~C~~~~~~l~~~~~~y~-~~v~~~~~ 90 (196)
+++|+.|+ -.-||.|..-.+.+.++.+++. .+++++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~v 68 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGI 68 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 67777776 5679999998899999888886 35776654
No 158
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=77.22 E-value=5.2 Score=29.87 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCChhhhhhchHHH
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~ 75 (196)
....+++|.|+.|.=|..|.+.++
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk 47 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMK 47 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHH
Confidence 456899999999999999988887
No 159
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=77.11 E-value=4.3 Score=29.22 Aligned_cols=39 Identities=5% Similarity=0.113 Sum_probs=29.3
Q ss_pred CCeEEEEec-CCCChhhhhhchHHHHHHHhcC-CcEEEEEE
Q 029265 52 DAIIIEAFF-DPVCPDSRDAWPPLKQALQHYG-PHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~-D~~CP~C~~~~~~l~~~~~~y~-~~v~~~~~ 90 (196)
+++.|+.|+ -.-||.|...-+.+.++.+++. .++.++..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~i 63 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGV 63 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 456677666 5789999999999988888775 35666654
No 160
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=77.10 E-value=3.8 Score=31.89 Aligned_cols=40 Identities=8% Similarity=0.212 Sum_probs=31.3
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEEecCC
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVHLLPL 94 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~~~pl 94 (196)
+++.|+.|..-.|+.|+. .+.|.++.++|.+ .+.++ -+|.
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vl--g~p~ 65 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVL--GFPC 65 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEE--Eeec
Confidence 579999999999999974 7889999999874 35444 4443
No 161
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=76.64 E-value=3.7 Score=31.22 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=32.9
Q ss_pred CCCCeEEEEecCCCChhhhhhchHHHHHHHhcCCc---EEEEEE
Q 029265 50 DSDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH---VSLVVH 90 (196)
Q Consensus 50 ~~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~---v~~~~~ 90 (196)
..+++....|.=--||-|+.|-|.++++.++...+ +.++|.
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfV 74 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFV 74 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEE
Confidence 34789999999999999999999999988764433 666664
No 162
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=76.05 E-value=1.2 Score=31.78 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=22.1
Q ss_pred CCChhhhhhchHHHHHHHhcCCcEEEEEEecCCC
Q 029265 62 PVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPLP 95 (196)
Q Consensus 62 ~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl~ 95 (196)
+-||+|...+-.|.-. -....++++++..||-|
T Consensus 22 f~Cp~c~~iEGlLa~~-P~l~~~ldV~rV~f~RP 54 (112)
T PF11287_consen 22 FYCPHCAAIEGLLASF-PDLRERLDVRRVDFPRP 54 (112)
T ss_pred EECCchHHHHhHHhhC-hhhhhcccEEEeCCCCc
Confidence 7899999877665421 01124788888888765
No 163
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=76.03 E-value=1.9 Score=30.51 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=23.1
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|.+|.-+.||+|++...-|++ . .+.|.++++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~----~--~i~~~~idi 31 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDE----H--GVDYTAIDI 31 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHH----c--CCceEEecc
Confidence 468999999999998765553 2 477777764
No 164
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=75.72 E-value=2.4 Score=29.80 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=21.1
Q ss_pred EecCCCChhhhhhchHHHHHHHhcCCcEEEE
Q 029265 58 AFFDPVCPDSRDAWPPLKQALQHYGPHVSLV 88 (196)
Q Consensus 58 ~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~ 88 (196)
+|+|-.||.|...-..+++. +. .+.++|+
T Consensus 1 v~YDg~C~lC~~~~~~l~~~-d~-~~~l~~~ 29 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRR-DR-GGRLRFV 29 (114)
T ss_pred CEECCCCHhHHHHHHHHHhc-CC-CCCEEEE
Confidence 48999999999988877764 11 2456655
No 165
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=74.38 E-value=3 Score=25.97 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=16.8
Q ss_pred EEEecCCCChhhhhhchHHHH
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQ 76 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~ 76 (196)
|+.|.-..||+|.+....+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~ 22 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE 22 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH
Confidence 678888999999997666653
No 166
>PRK10824 glutaredoxin-4; Provisional
Probab=73.66 E-value=2.6 Score=30.30 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=12.1
Q ss_pred CCChhhhhhchHHHH
Q 029265 62 PVCPDSRDAWPPLKQ 76 (196)
Q Consensus 62 ~~CP~C~~~~~~l~~ 76 (196)
+.||||.+.-..|..
T Consensus 28 p~Cpyc~~ak~lL~~ 42 (115)
T PRK10824 28 PSCGFSAQAVQALSA 42 (115)
T ss_pred CCCchHHHHHHHHHH
Confidence 699999998776654
No 167
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=73.19 E-value=11 Score=30.67 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=33.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.+..||.|..-.|..|--....+.++.++ ++-|-+.||-
T Consensus 41 ~~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhV 79 (261)
T COG5429 41 PLGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHV 79 (261)
T ss_pred CceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEee
Confidence 57789999999999999999999988875 5678888874
No 168
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=72.96 E-value=5.6 Score=39.28 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=33.4
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCc-EEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPH-VSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~-v~~~~~ 90 (196)
++++|+.|.-.-||.|+...|.|+++.++|.++ +.++-.
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV 459 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGV 459 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEE
Confidence 688999999999999999999999999999764 555533
No 169
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=72.85 E-value=2.1 Score=26.27 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=13.8
Q ss_pred CCCChhhhhhchHHHHHHHh
Q 029265 61 DPVCPDSRDAWPPLKQALQH 80 (196)
Q Consensus 61 D~~CP~C~~~~~~l~~~~~~ 80 (196)
.|.||+|.+ .-....|.+.
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H 20 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEH 20 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHH
Confidence 589999999 6555566553
No 170
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=72.80 E-value=3.1 Score=26.79 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=17.1
Q ss_pred EEEEecCCCChhhhhhchHHH
Q 029265 55 IIEAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~ 75 (196)
+|..|....||+|++..-.+.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~ 21 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLD 21 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHH
Confidence 367899999999999876554
No 171
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=72.73 E-value=2.6 Score=29.30 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=22.2
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|.+|.-+.||+|++...-++ +. .+.|.++++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~----~~--~i~~~~idi 31 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLE----EH--GIEYEFIDY 31 (105)
T ss_pred CEEEECCCCHHHHHHHHHHH----Hc--CCCcEEEee
Confidence 46899999999999865554 32 466666664
No 172
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=72.22 E-value=6 Score=28.45 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=21.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH--------hhcccCCC-C
Q 029265 5 SPNKNHATLILQSALLCFFVFNS--------CSKSQSTP-P 36 (196)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-p 36 (196)
++.|+.|+++..++.+++|++.. +.+++.+| |
T Consensus 1 ~~sr~~Ra~Ls~~ln~LAL~~S~tA~~sSyWC~GTqKVpKP 41 (118)
T PF07803_consen 1 KMSRRQRALLSLILNLLALAFSTTALLSSYWCEGTQKVPKP 41 (118)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhcccccccceecCCC
Confidence 35677777777777776666554 33688888 6
No 173
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=72.09 E-value=6.4 Score=21.21 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=16.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHH
Q 029265 5 SPNKNHATLILQSALLCFFVFN 26 (196)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (196)
+.+|.||+.+.++++++.+++.
T Consensus 5 ~LP~~Hr~~l~~l~~v~l~ll~ 26 (30)
T PF08525_consen 5 PLPKLHRRALIALSAVVLVLLL 26 (30)
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 4678899988888877766543
No 174
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=70.31 E-value=13 Score=25.66 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=30.5
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.||+|..|.|-. ++|......++.+.+ ..++|++..+..
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~-lSdkI~~~~~~~ 57 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIAS-LSDKITLEEDND 57 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHH-hCCceEEEEecC
Confidence 689999999988 999888777776655 357888887653
No 175
>PTZ00256 glutathione peroxidase; Provisional
Probab=70.20 E-value=6.6 Score=30.23 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=28.0
Q ss_pred eEEEEecCCCChhhhhhchHHHHHHHhcCC-cEEEEEE
Q 029265 54 IIIEAFFDPVCPDSRDAWPPLKQALQHYGP-HVSLVVH 90 (196)
Q Consensus 54 vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~-~v~~~~~ 90 (196)
+.|+.+.---||.|.+-.|.+.++.++|.+ .+.++-.
T Consensus 43 vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~v 80 (183)
T PTZ00256 43 AIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAF 80 (183)
T ss_pred EEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEE
Confidence 445555677799999999999999999874 3665544
No 176
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=69.76 E-value=4.1 Score=27.56 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=15.8
Q ss_pred CCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 62 PVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 62 ~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
+.||+|.+....|.+ . .+.|..++
T Consensus 21 ~~Cp~C~~ak~~L~~----~--~i~y~~id 44 (90)
T cd03028 21 PRCGFSRKVVQILNQ----L--GVDFGTFD 44 (90)
T ss_pred CCCcHHHHHHHHHHH----c--CCCeEEEE
Confidence 799999987666553 2 25555554
No 177
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=69.29 E-value=3.6 Score=32.96 Aligned_cols=29 Identities=28% Similarity=0.372 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHH
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQ 79 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~ 79 (196)
....++..|.|..||+|++++..+..+.+
T Consensus 117 ~~~~~~~~f~~~~~~~~~~a~~~~~~~~~ 145 (244)
T COG1651 117 RLVLREFPFLDPACPYCRRAAQAARCAAD 145 (244)
T ss_pred ceEEEEeecCCCCcHHHHHHHHHHHHhcc
Confidence 35778899999999999999999987655
No 178
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=69.09 E-value=3.6 Score=36.15 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=18.4
Q ss_pred EEEEecCCCChhhhhhchHHHH
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQ 76 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~ 76 (196)
+|++|.-+.||+|.+...-|.+
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~ 24 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGA 24 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHH
Confidence 5899999999999988666543
No 179
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=68.04 E-value=4.8 Score=28.28 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=22.6
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|.+|.-+.|+.|++...-|+ +. .+.|.++++
T Consensus 1 i~iy~~~~C~~crka~~~L~----~~--~i~~~~~di 31 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLE----AR--GVAYTFHDY 31 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHH----Hc--CCCeEEEec
Confidence 46899999999999765554 32 466777664
No 180
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=67.54 E-value=18 Score=33.07 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=31.9
Q ss_pred CCCCeEEEEecCCCChhh-hhhchHHHHHHHhcC---CcEEEEEEecCCC
Q 029265 50 DSDAIIIEAFFDPVCPDS-RDAWPPLKQALQHYG---PHVSLVVHLLPLP 95 (196)
Q Consensus 50 ~~a~vtI~~f~D~~CP~C-~~~~~~l~~~~~~y~---~~v~~~~~~~pl~ 95 (196)
-+.||+|..|.+-.=|-- +.....+++++++|. ++|++++++ |.+
T Consensus 46 L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iD-P~~ 94 (552)
T TIGR03521 46 LDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVN-PLE 94 (552)
T ss_pred CCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeC-CCC
Confidence 458999999998764432 334456778888774 579999986 543
No 181
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=67.19 E-value=11 Score=30.50 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=30.8
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhc----CCcEEEEEEe
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHY----GPHVSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y----~~~v~~~~~~ 91 (196)
.+.|||+.+.+..|.+|-.=-..|+.|..+. -.+|+|.+.+
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN 69 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVN 69 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEc
Confidence 4789999999999999988655565554332 2578888775
No 182
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=66.61 E-value=6.4 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=23.2
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|.+|.-+.|+.|+++. +++++. .|.|.++++
T Consensus 2 i~iY~~~~C~~crkA~----~~L~~~--~i~~~~~d~ 32 (132)
T PRK13344 2 IKIYTISSCTSCKKAK----TWLNAH--QLSYKEQNL 32 (132)
T ss_pred EEEEeCCCCHHHHHHH----HHHHHc--CCCeEEEEC
Confidence 6789999999999965 444443 477787775
No 183
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=66.59 E-value=4.2 Score=28.96 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=22.8
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|..|.-..||+|++...-+++ . ++.|.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~----~--~i~~~~idi 31 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEA----N--GIEYQFIDI 31 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHH----c--CCceEEEec
Confidence 468999999999997765553 2 467777764
No 184
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=66.52 E-value=5.2 Score=29.27 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=22.7
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|.+|.-+.||+|++.-. ++++. .|.|.++++
T Consensus 2 i~iY~~~~C~~C~ka~~----~L~~~--gi~~~~idi 32 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKA----WLEEH--DIPFTERNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHH----HHHHc--CCCcEEeec
Confidence 67899999999999654 44443 467777764
No 185
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=66.49 E-value=10 Score=27.32 Aligned_cols=40 Identities=3% Similarity=-0.114 Sum_probs=29.2
Q ss_pred CCeEEEEecCCCCh--hhh--hhchHHHHHHHhc--CCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCP--DSR--DAWPPLKQALQHY--GPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP--~C~--~~~~~l~~~~~~y--~~~v~~~~~~ 91 (196)
..+.|+-|...-|+ +|+ ...|.+.++..+| .++++|.-.+
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD 72 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVD 72 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEe
Confidence 44566666666664 699 7889999998888 6777777654
No 186
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=66.48 E-value=5.8 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=22.9
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|.+|.-+.|+.|+++.. ++++. .+.|.++++
T Consensus 2 i~iy~~p~C~~crkA~~----~L~~~--gi~~~~~d~ 32 (113)
T cd03033 2 IIFYEKPGCANNARQKA----LLEAA--GHEVEVRDL 32 (113)
T ss_pred EEEEECCCCHHHHHHHH----HHHHc--CCCcEEeeh
Confidence 67899999999998654 44443 477777765
No 187
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=66.07 E-value=8.8 Score=31.74 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
....|+-+++..+|-|..+...|..+..+|+ .|+|+=.
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI 183 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKI 183 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEE
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEE
Confidence 4567888999999999999999999999987 5777643
No 188
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=64.69 E-value=8.3 Score=28.67 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=23.1
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhc-CCcEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHY-GPHVSLV 88 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y-~~~v~~~ 88 (196)
.+...++++|-.||.|-.+-.-|. +.. .+.++|.
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi---~~D~~~~i~f~ 40 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLI---RRDQGGRIRFA 40 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHH---HhccCCcEEEE
Confidence 355789999999999999554443 332 3455555
No 189
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=62.08 E-value=15 Score=33.43 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=33.3
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
..||+|..|.|..|++|......++++.+ ..++|++.+++.
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~ 405 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNR 405 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEecc
Confidence 36899999999999999988888877654 467899887653
No 190
>PRK12559 transcriptional regulator Spx; Provisional
Probab=61.49 E-value=7.4 Score=28.52 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=22.3
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|.+|.-+.|+.|++... ++++. .+.|.++++
T Consensus 2 i~iY~~~~C~~crkA~~----~L~~~--gi~~~~~di 32 (131)
T PRK12559 2 VVLYTTASCASCRKAKA----WLEEN--QIDYTEKNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHH----HHHHc--CCCeEEEEe
Confidence 67999999999999654 44443 466666654
No 191
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=61.06 E-value=19 Score=25.78 Aligned_cols=43 Identities=30% Similarity=0.394 Sum_probs=36.7
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcC--CcEEEEEE---ecCC
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYG--PHVSLVVH---LLPL 94 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~--~~v~~~~~---~~pl 94 (196)
.-..|+.|.+..-|.-+.|.+.++++.++|. +++.++.. .|||
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPl 67 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPL 67 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCch
Confidence 3578999999999999999999999999886 57888886 3665
No 192
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=59.65 E-value=17 Score=32.78 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=31.5
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.||+|..|.| .|++|......++++.+ ..++|++..+..
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~-~s~~i~~~~~~~ 57 (517)
T PRK15317 19 RPIELVASLD-DSEKSAELKELLEEIAS-LSDKITVEEDSL 57 (517)
T ss_pred CCEEEEEEeC-CCchHHHHHHHHHHHHH-hCCceEEEEccC
Confidence 6899999999 89999988888877655 357888877653
No 193
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=58.79 E-value=16 Score=27.57 Aligned_cols=38 Identities=5% Similarity=-0.025 Sum_probs=26.7
Q ss_pred CCeEEEEecCC-CChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 52 DAIIIEAFFDP-VCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~-~CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
++.+|+.|+=- .||.|..--+.+.++.+++ ++++++-.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-~~~~vv~v 82 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-DNTVVLCI 82 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-CCcEEEEE
Confidence 45555555544 4999999999998888877 35665543
No 194
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=58.19 E-value=9.3 Score=25.06 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=19.5
Q ss_pred CCeEEEEecCCCChhhhhhchHH
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPL 74 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l 74 (196)
.+..++.|.---|++|+.+...+
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHT
T ss_pred CCCEEEEEECCCCHhHHHHHHHH
Confidence 46678888999999999998765
No 195
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=58.08 E-value=16 Score=27.65 Aligned_cols=39 Identities=3% Similarity=0.006 Sum_probs=29.9
Q ss_pred CCeEEEEec-CCCChhhhhhchHHHHHHHhcC-CcEEEEEE
Q 029265 52 DAIIIEAFF-DPVCPDSRDAWPPLKQALQHYG-PHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~-D~~CP~C~~~~~~l~~~~~~y~-~~v~~~~~ 90 (196)
++..|+.|+ ---||.|...-+.+.++.++|. .++.++..
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~I 69 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGV 69 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 567777777 4569999999899999888886 35766654
No 196
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=56.63 E-value=29 Score=25.11 Aligned_cols=22 Identities=14% Similarity=-0.076 Sum_probs=18.2
Q ss_pred CCeEEEEecCCCChhhhhhchH
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPP 73 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~ 73 (196)
.+..++.|.---|++|+.+.++
T Consensus 15 ~KpVll~f~a~WC~~Ck~me~~ 36 (124)
T cd02955 15 DKPIFLSIGYSTCHWCHVMEHE 36 (124)
T ss_pred CCeEEEEEccCCCHhHHHHHHH
Confidence 4567777889999999999874
No 197
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=56.41 E-value=12 Score=27.34 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=24.4
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
||..|.-+.|.-|+++-.-|+ + ..|.+.+|++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~----~--~gi~~~~~d~ 33 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALK----A--SGHDVEVQDI 33 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHH----H--CCCCcEEEec
Confidence 678999999999999765544 3 2577888765
No 198
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=55.24 E-value=23 Score=31.95 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=31.3
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
.||+|..|.| .|++|......++++.+ ..++|++..+.+
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~-~s~ki~~~~~~~ 57 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIAS-LSDKISLTQNTA 57 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHH-hCCCeEEEEecC
Confidence 6899999999 89999888877776655 357898887764
No 199
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.97 E-value=8.3 Score=25.67 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=17.5
Q ss_pred EEecCCCChhhhhhchHHHHH
Q 029265 57 EAFFDPVCPDSRDAWPPLKQA 77 (196)
Q Consensus 57 ~~f~D~~CP~C~~~~~~l~~~ 77 (196)
..|+.-.||.|+.+-..++++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeeccccCcchHHHHHHHHHc
Confidence 678999999999987777654
No 200
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.47 E-value=5.2 Score=30.58 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=12.2
Q ss_pred HHHhccCcccccCC
Q 029265 183 KVTQKFFSFNTSFF 196 (196)
Q Consensus 183 k~a~~~GV~GTPtF 196 (196)
.+|+.++|+|||+|
T Consensus 106 ELa~kf~vrstPtf 119 (182)
T COG2143 106 ELAQKFAVRSTPTF 119 (182)
T ss_pred HHHHHhccccCceE
Confidence 46788999999997
No 201
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=52.84 E-value=22 Score=26.13 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=27.4
Q ss_pred CCeEEEEec-CCCChhhhhhchHHHHHHHhcC-CcEEEEEE
Q 029265 52 DAIIIEAFF-DPVCPDSRDAWPPLKQALQHYG-PHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~-D~~CP~C~~~~~~l~~~~~~y~-~~v~~~~~ 90 (196)
++++|+.|. -.-||.|....+.+.++.+++. .+++|+-.
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~I 70 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGI 70 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 455555554 4579999998888888888775 35766654
No 202
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=52.19 E-value=14 Score=22.44 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc
Q 029265 9 NHATLILQSALLCFFVFNSCSK 30 (196)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~ 30 (196)
+.+.+++++++++.+++++..+
T Consensus 14 ~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 14 RNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred hCchHHHHHHHHHHHHHHHHHH
Confidence 4455666766666555555443
No 203
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=52.00 E-value=26 Score=32.22 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=28.0
Q ss_pred CCeEEEEecCCCChhhhhhchHH---HHHHHhcCCcEEEEEEe
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPL---KQALQHYGPHVSLVVHL 91 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l---~~~~~~y~~~v~~~~~~ 91 (196)
.+..++.|+-.-|++|+.+++.+ .++.+++. ++.+.-.+
T Consensus 474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vD 515 (571)
T PRK00293 474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQAD 515 (571)
T ss_pred CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEE
Confidence 46789999999999999998875 45555554 45444333
No 204
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=51.84 E-value=93 Score=23.65 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCCChh-hhhhchHHHHHHHhc---CCcEEEEEEec
Q 029265 51 SDAIIIEAFFDPVCPD-SRDAWPPLKQALQHY---GPHVSLVVHLL 92 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~-C~~~~~~l~~~~~~y---~~~v~~~~~~~ 92 (196)
.+++.|+.|.=-.||. |-..-..+.++.++. ..++++++.-+
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISv 96 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISV 96 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEe
Confidence 5789999999999975 776666666665543 34788888754
No 205
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=49.99 E-value=13 Score=23.97 Aligned_cols=20 Identities=20% Similarity=0.042 Sum_probs=16.1
Q ss_pred EEEecCCCChhhhhhchHHH
Q 029265 56 IEAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~ 75 (196)
+..|....||+|.+....++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~ 21 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLT 21 (77)
T ss_pred ceEecCCCCchHHHHHHHHH
Confidence 56788999999998766665
No 206
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=48.51 E-value=16 Score=24.10 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=25.5
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
||+.|.=+.|+-|-.+...+.++..+. .+.+..++.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI 36 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDI 36 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEET
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEEC
Confidence 688999999999999999988765432 355555543
No 207
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=47.27 E-value=14 Score=31.25 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=23.4
Q ss_pred CCCeEEEEecCCCChhhhhhchHHHHH
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPLKQA 77 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l~~~ 77 (196)
+..+=++.|+-|-|.||++.+|.-.++
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeV 68 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEV 68 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHh
Confidence 477899999999999999999876654
No 208
>PRK10397 lipoprotein; Provisional
Probab=46.93 E-value=29 Score=25.46 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=40.7
Q ss_pred CC-CCCCCCccccCCC-----CCCCCeEEEEecCCCChhhhhhchHHH---HHHHhcCC--cEEEEEEecCC
Q 029265 34 TP-PAKYDGFFYANHP-----VDSDAIIIEAFFDPVCPDSRDAWPPLK---QALQHYGP--HVSLVVHLLPL 94 (196)
Q Consensus 34 ~~-p~~~~g~~~g~~~-----~~~a~vtI~~f~D~~CP~C~~~~~~l~---~~~~~y~~--~v~~~~~~~pl 94 (196)
.| |..-.|+.-+.|. |+.|-.++++=.|-.--.|+.|...+- ++.....+ +|+...+.+||
T Consensus 28 tPaPa~l~GyWqs~gpq~~lvSp~AiaSLivt~~GdtldCrqWqrvia~PGKlt~~~~~~~NVt~~~~v~~l 99 (137)
T PRK10397 28 TPAPAGLAGYWQTKGPQRALVSPEAIASLIVTKEGDTLDCRQWQRVIAVPGKLTLRSDDLTNVTVKRELYEL 99 (137)
T ss_pred CCCCccccceeeccCCcccccCccceEEEEEecCCCEEeehhcceeeeccceeeeecCceEEeeeeeEEEEE
Confidence 46 7777788766443 577878999999999999999998864 33322111 44444455565
No 209
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=46.56 E-value=31 Score=26.54 Aligned_cols=39 Identities=8% Similarity=-0.039 Sum_probs=29.2
Q ss_pred CCeEEEEec-CCCChhhhhhchHHHHHHHhcC-CcEEEEEE
Q 029265 52 DAIIIEAFF-DPVCPDSRDAWPPLKQALQHYG-PHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~-D~~CP~C~~~~~~l~~~~~~y~-~~v~~~~~ 90 (196)
++.+|+.|+ ---||.|..-.+.+.++.+++. ..++++..
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~V 71 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSV 71 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 567777777 6779999998899988888775 35665543
No 210
>PF15240 Pro-rich: Proline-rich
Probab=46.26 E-value=13 Score=28.95 Aligned_cols=14 Identities=14% Similarity=-0.040 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhh
Q 029265 16 QSALLCFFVFNSCS 29 (196)
Q Consensus 16 ~~~~~~~~~~~~~~ 29 (196)
||||||.++|++..
T Consensus 1 MLlVLLSvALLALS 14 (179)
T PF15240_consen 1 MLLVLLSVALLALS 14 (179)
T ss_pred ChhHHHHHHHHHhh
Confidence 56777755544443
No 211
>PHA00616 hypothetical protein
Probab=45.20 E-value=16 Score=21.61 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=15.2
Q ss_pred CCChhhhhhchHHHHHHHh
Q 029265 62 PVCPDSRDAWPPLKQALQH 80 (196)
Q Consensus 62 ~~CP~C~~~~~~l~~~~~~ 80 (196)
++||.|.+.+.....+..+
T Consensus 2 YqC~~CG~~F~~~s~l~~H 20 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEH 20 (44)
T ss_pred CccchhhHHHhhHHHHHHH
Confidence 7899999998877766554
No 212
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=44.37 E-value=21 Score=24.94 Aligned_cols=23 Identities=13% Similarity=-0.104 Sum_probs=19.8
Q ss_pred CCeEEEEecCCCChhhhhhchHH
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPL 74 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l 74 (196)
.+..++.+....|++|+.+...+
T Consensus 17 ~K~llv~~~~~~c~~c~~~~~~v 39 (114)
T cd02958 17 KKWLLVYLQSEDEFDSQVLNRDL 39 (114)
T ss_pred CceEEEEEecCCcchHHHHHHHH
Confidence 67889999999999999997643
No 213
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=43.56 E-value=24 Score=25.95 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=18.2
Q ss_pred CCeEEEEecCCCChhhhhhchHH
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPL 74 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l 74 (196)
.+..++.|.---||+|+++...+
T Consensus 23 ~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 23 NKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred CCeEEEEEeCCcCHhHHHHHHHh
Confidence 45566668888999999998764
No 214
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=42.33 E-value=8.6 Score=24.11 Aligned_cols=14 Identities=36% Similarity=0.975 Sum_probs=11.4
Q ss_pred CCCChhhhhhchHH
Q 029265 61 DPVCPDSRDAWPPL 74 (196)
Q Consensus 61 D~~CP~C~~~~~~l 74 (196)
-+-||.|++.+..+
T Consensus 44 ~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 44 FPVCPECKEIYESL 57 (58)
T ss_pred CCCCcCHHHHHHhc
Confidence 47899999987765
No 215
>PTZ00062 glutaredoxin; Provisional
Probab=41.99 E-value=22 Score=28.26 Aligned_cols=24 Identities=21% Similarity=0.168 Sum_probs=15.0
Q ss_pred CCeEEEEecC---CCChhhhhhchHHH
Q 029265 52 DAIIIEAFFD---PVCPDSRDAWPPLK 75 (196)
Q Consensus 52 a~vtI~~f~D---~~CP~C~~~~~~l~ 75 (196)
.||.|-.=.+ +.||+|++....|.
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~ 139 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLN 139 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHH
Confidence 4555555544 58888887655554
No 216
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=41.85 E-value=6.9 Score=18.97 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=12.4
Q ss_pred CCChhhhhhchHHHHHH
Q 029265 62 PVCPDSRDAWPPLKQAL 78 (196)
Q Consensus 62 ~~CP~C~~~~~~l~~~~ 78 (196)
|.||.|.+.++.-..+.
T Consensus 1 y~C~~C~~~f~~~~~l~ 17 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLK 17 (23)
T ss_dssp EEETTTTEEESSHHHHH
T ss_pred CCCCCCCCccCCHHHHH
Confidence 46999999887665544
No 217
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=41.81 E-value=23 Score=25.10 Aligned_cols=31 Identities=19% Similarity=0.376 Sum_probs=22.5
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|..|.-+.|+-|++...-++ +. .+.+.++++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~----~~--~i~~~~~di 31 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLE----DK--GIEPEVVKY 31 (114)
T ss_pred CEEEECCCCHHHHHHHHHHH----HC--CCCeEEEec
Confidence 46899999999999765554 32 467777764
No 218
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=41.72 E-value=7.1 Score=18.66 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=11.7
Q ss_pred CCChhhhhhchHHHHHHH
Q 029265 62 PVCPDSRDAWPPLKQALQ 79 (196)
Q Consensus 62 ~~CP~C~~~~~~l~~~~~ 79 (196)
+.|+.|....+....+..
T Consensus 1 ~~C~~C~~~~~~~~~l~~ 18 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQ 18 (24)
T ss_dssp EE-SSTS-EESSHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHH
Confidence 469999998887766544
No 219
>PHA00407 phage lambda Rz1-like protein
Probab=40.78 E-value=52 Score=21.85 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCCC
Q 029265 9 NHATLILQSALLCFFVFNSCSKSQSTPP 36 (196)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p 36 (196)
+..++++|++++++..+.++ ++..-+|
T Consensus 30 rwkaaLIGlllicv~tISGC-aSes~lp 56 (84)
T PHA00407 30 RWKAALIGLLLICVATISGC-ASESNLP 56 (84)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hhcccCC
Confidence 34456667766666664444 4444443
No 220
>PRK10026 arsenate reductase; Provisional
Probab=40.73 E-value=31 Score=25.73 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=24.4
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
+|.+|.-+.|.-|++...-|+ +. .+.|.+|++
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~----~~--gi~~~~~d~ 34 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIR----NS--GTEPTIIHY 34 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHH----HC--CCCcEEEee
Confidence 578999999999999765554 32 577787775
No 221
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=39.82 E-value=21 Score=22.22 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=16.2
Q ss_pred EEecCCCChhhhhhchHHHH
Q 029265 57 EAFFDPVCPDSRDAWPPLKQ 76 (196)
Q Consensus 57 ~~f~D~~CP~C~~~~~~l~~ 76 (196)
..|....||+|++..-.++.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~ 21 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAE 21 (74)
T ss_pred EEEeCCCCcchHHHHHHHHH
Confidence 57888899999998777653
No 222
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=39.61 E-value=22 Score=22.17 Aligned_cols=19 Identities=16% Similarity=-0.029 Sum_probs=15.6
Q ss_pred EEecCCCChhhhhhchHHH
Q 029265 57 EAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 57 ~~f~D~~CP~C~~~~~~l~ 75 (196)
..|....||+|.+....++
T Consensus 2 ~ly~~~~~~~~~~v~~~l~ 20 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLA 20 (73)
T ss_pred EEEECCCChhHHHHHHHHH
Confidence 5788899999999877664
No 223
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=39.45 E-value=67 Score=26.13 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCCeEEEEecCCCChh-hhhhchHHHHHHHhcC----CcEEEEEEe
Q 029265 51 SDAIIIEAFFDPVCPD-SRDAWPPLKQALQHYG----PHVSLVVHL 91 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~-C~~~~~~l~~~~~~y~----~~v~~~~~~ 91 (196)
+.||+|..|.+..=|. =....+.++.++++|. |+|++.|.+
T Consensus 24 ~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iD 69 (271)
T PF09822_consen 24 DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFID 69 (271)
T ss_pred CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4799999999985555 3445566777888773 489999986
No 224
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=38.82 E-value=28 Score=23.16 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=17.9
Q ss_pred CeEEEEecCCCChhhhhhchHHH
Q 029265 53 AIIIEAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 53 ~vtI~~f~D~~CP~C~~~~~~l~ 75 (196)
+-++..|.-..||+|.+..-.+.
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~ 38 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLA 38 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHH
Confidence 34678899999999998765554
No 225
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=38.02 E-value=11 Score=26.76 Aligned_cols=16 Identities=38% Similarity=0.978 Sum_probs=11.8
Q ss_pred ecCCC-----ChhhhhhchHH
Q 029265 59 FFDPV-----CPDSRDAWPPL 74 (196)
Q Consensus 59 f~D~~-----CP~C~~~~~~l 74 (196)
|+|++ ||+|..-++.-
T Consensus 19 FYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 19 FYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred hccCCCCCccCCCCCCccCcc
Confidence 66654 99999887654
No 226
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=37.99 E-value=1.8e+02 Score=25.03 Aligned_cols=20 Identities=5% Similarity=0.182 Sum_probs=10.1
Q ss_pred HHHHHHhc---CCcEEEEEEecC
Q 029265 74 LKQALQHY---GPHVSLVVHLLP 93 (196)
Q Consensus 74 l~~~~~~y---~~~v~~~~~~~p 93 (196)
+++++++| .++|++.+...|
T Consensus 50 ~~~~~~~F~~~~~~i~V~~~~~~ 72 (437)
T TIGR03850 50 WEEVVEAFEKSHEGVKVELTVSK 72 (437)
T ss_pred HHHHHHHHHHHCCCceEEEEeCc
Confidence 44454443 245777665443
No 227
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=37.78 E-value=29 Score=24.47 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=22.3
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|..|.-+.|+-|++... ++++. ++.|.++++
T Consensus 1 i~iy~~~~C~t~rkA~~----~L~~~--~i~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALA----LLEEA--GIEPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHH----HHHHC--CCCeEEEec
Confidence 46899999999999754 44433 477777764
No 228
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=36.76 E-value=23 Score=21.13 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=14.5
Q ss_pred EEecCCCChhhhhhchHHH
Q 029265 57 EAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 57 ~~f~D~~CP~C~~~~~~l~ 75 (196)
..|.-..||+|.+....+.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~ 20 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALE 20 (71)
T ss_pred EEEeCCCCccHHHHHHHHH
Confidence 4677778999998776665
No 229
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=36.75 E-value=14 Score=26.19 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=12.1
Q ss_pred CCChhhhhhchHHH
Q 029265 62 PVCPDSRDAWPPLK 75 (196)
Q Consensus 62 ~~CP~C~~~~~~l~ 75 (196)
+.||+|-..|=.+.
T Consensus 58 lsCpwC~gvWvA~~ 71 (105)
T PF07098_consen 58 LSCPWCTGVWVAAG 71 (105)
T ss_pred hcChhHHHHHHHHH
Confidence 68999999997765
No 230
>PRK10853 putative reductase; Provisional
Probab=36.59 E-value=34 Score=24.51 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=23.2
Q ss_pred EEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|..|.-+.|..|+++-.-|+ +. .+.+.++++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~----~~--~i~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLE----AQ--GIDYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHH----Hc--CCCcEEeeh
Confidence 56899999999999765544 32 577787765
No 231
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=36.15 E-value=20 Score=22.43 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=14.6
Q ss_pred EEecCCCChhhhhhchHHH
Q 029265 57 EAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 57 ~~f~D~~CP~C~~~~~~l~ 75 (196)
..|....||+|.+..-.+.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~ 20 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAG 20 (71)
T ss_pred ceEecCCCcHhHHHHHHHH
Confidence 3688899999997765554
No 232
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=35.22 E-value=44 Score=17.04 Aligned_cols=14 Identities=29% Similarity=0.308 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 029265 11 ATLILQSALLCFFV 24 (196)
Q Consensus 11 ~~~~~~~~~~~~~~ 24 (196)
-++|+.+++++.++
T Consensus 6 FalivVLFILLiIv 19 (24)
T PF09680_consen 6 FALIVVLFILLIIV 19 (24)
T ss_pred chhHHHHHHHHHHh
Confidence 35666666665554
No 233
>TIGR03746 conj_TIGR03746 integrating conjugative element protein, PFL_4703 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. The function is unknown.
Probab=35.04 E-value=41 Score=26.64 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=16.6
Q ss_pred CCCCeEEEEecCCCChhhhhhch
Q 029265 50 DSDAIIIEAFFDPVCPDSRDAWP 72 (196)
Q Consensus 50 ~~a~vtI~~f~D~~CP~C~~~~~ 72 (196)
.|.+-.|.-+.-|.-|.|+.+-.
T Consensus 84 ~dY~~ni~~l~~YlTP~c~~~L~ 106 (202)
T TIGR03746 84 QDYGANIFRLSPYLTPSCRAFLQ 106 (202)
T ss_pred HHHHHHHHhcccccCHHHHHHHH
Confidence 45556677888888888888643
No 234
>KOG2703 consensus C4-type Zn-finger protein [General function prediction only]
Probab=34.97 E-value=22 Score=31.16 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=23.0
Q ss_pred EEecCCCChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 57 EAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 57 ~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
++...|.||||..-..++.....--.+-+|++++
T Consensus 64 vVimSF~CpHCG~kN~eiQ~a~~iQ~~Gvri~l~ 97 (460)
T KOG2703|consen 64 VVIMSFECPHCGHKNNEIQSAEEIQEGGVRIELR 97 (460)
T ss_pred eeeEEeecCccCCccccccchhccccCceEEEEE
Confidence 4556899999999888776443322345666665
No 235
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=34.81 E-value=1.1e+02 Score=31.17 Aligned_cols=84 Identities=11% Similarity=0.019 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHhcChhhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCCchhhHHHHH
Q 029265 101 YATSRALHIVNRTNSSATFCLLEWFFKQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRV 180 (196)
Q Consensus 101 ~~aa~a~~a~~~~~~~~~~~~~~~lf~~q~~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~~~~~~~~r~ 180 (196)
-.-+++++...+.+++.||.|++.+=..-+. .+ ...+....+..+.+.|.+.++-..++-|.-++....+.-.++.
T Consensus 36 ~ll~e~sE~l~~e~~elFw~f~~~v~~l~~~-~~---e~~s~~~~y~~~~~~a~~~ls~~~~~lL~f~lalrs~spriQ~ 111 (1470)
T KOG1879|consen 36 PLLLEASELLAEESNELFWNFVNAVTGLDDD-SN---ETDSDENKYNLISKVAGQVLSPEEVSLLKFSLALRSYSPRIQA 111 (1470)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHhhccccc-cc---cchhHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccHHHHH
Confidence 3457888888888899999999988543221 11 2335666778888888886554444555555544444555555
Q ss_pred HHHHHhcc
Q 029265 181 SFKVTQKF 188 (196)
Q Consensus 181 ~~k~a~~~ 188 (196)
....+...
T Consensus 112 ~~qia~e~ 119 (1470)
T KOG1879|consen 112 FQQIAAEE 119 (1470)
T ss_pred HHHHHhhc
Confidence 55555443
No 236
>smart00594 UAS UAS domain.
Probab=33.18 E-value=38 Score=24.09 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=19.9
Q ss_pred CCCeEEEEecCCCChhhhhhchHH
Q 029265 51 SDAIIIEAFFDPVCPDSRDAWPPL 74 (196)
Q Consensus 51 ~a~vtI~~f~D~~CP~C~~~~~~l 74 (196)
+.|..++.+....|+.|..+...+
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~v 49 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDV 49 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHH
Confidence 467788888888999999998764
No 237
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=33.15 E-value=12 Score=18.96 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=15.6
Q ss_pred CCChhhhhhchHHHHHHHh
Q 029265 62 PVCPDSRDAWPPLKQALQH 80 (196)
Q Consensus 62 ~~CP~C~~~~~~l~~~~~~ 80 (196)
+.|..|.+.+..+..+.+.
T Consensus 2 ~~C~~C~~~F~~~~~l~~H 20 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREH 20 (27)
T ss_dssp EEETTTTEEESSHHHHHHH
T ss_pred CCCCccCCccCChhHHHHH
Confidence 4799999999988877764
No 238
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.67 E-value=24 Score=23.65 Aligned_cols=18 Identities=28% Similarity=0.827 Sum_probs=14.9
Q ss_pred CChhhhhhc---hHHHHHHHh
Q 029265 63 VCPDSRDAW---PPLKQALQH 80 (196)
Q Consensus 63 ~CP~C~~~~---~~l~~~~~~ 80 (196)
.||-|+..| -+|.++++.
T Consensus 23 ~CPrCrGVWLDrGELdKli~r 43 (88)
T COG3809 23 YCPRCRGVWLDRGELDKLIER 43 (88)
T ss_pred eCCccccEeecchhHHHHHHH
Confidence 599999998 468888875
No 239
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=32.29 E-value=32 Score=21.55 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=15.3
Q ss_pred EEEecCCCChhhhhhchHHH
Q 029265 56 IEAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 56 I~~f~D~~CP~C~~~~~~l~ 75 (196)
+..|..+.||+|++..-.++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~ 20 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAK 20 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHH
Confidence 35789999999997665554
No 240
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=32.00 E-value=15 Score=22.26 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=12.6
Q ss_pred CCeE-EEEecCCCChhhhh
Q 029265 52 DAII-IEAFFDPVCPDSRD 69 (196)
Q Consensus 52 a~vt-I~~f~D~~CP~C~~ 69 (196)
+.+. +.+..+..||+|..
T Consensus 14 ~~~~~~~~~~~irCp~Cg~ 32 (49)
T COG1996 14 REVELDQETRGIRCPYCGS 32 (49)
T ss_pred CeeehhhccCceeCCCCCc
Confidence 4555 45777888888864
No 241
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=31.86 E-value=62 Score=24.63 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=10.3
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 029265 8 KNHATLILQSALLCFFVFNS 27 (196)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (196)
|+..++|++.+++++.++++
T Consensus 1 kk~la~i~avvvV~~~a~~g 20 (161)
T PF10969_consen 1 KKILALIAAVVVVVAAAVVG 20 (161)
T ss_pred CceeehhHHHHHHHHHHHHH
Confidence 45566665555554444333
No 242
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=31.74 E-value=89 Score=20.53 Aligned_cols=20 Identities=25% Similarity=0.364 Sum_probs=9.9
Q ss_pred CCchhHHHHHHHHHHHHHHH
Q 029265 6 PNKNHATLILQSALLCFFVF 25 (196)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (196)
|.+.++..++++.+++++++
T Consensus 53 P~~P~~~lil~l~~~~Gl~l 72 (82)
T PF13807_consen 53 PVSPKRALILALGLFLGLIL 72 (82)
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 44555555555555544443
No 243
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=31.62 E-value=14 Score=20.72 Aligned_cols=13 Identities=15% Similarity=0.549 Sum_probs=8.2
Q ss_pred CChhhhhhchHHH
Q 029265 63 VCPDSRDAWPPLK 75 (196)
Q Consensus 63 ~CP~C~~~~~~l~ 75 (196)
.||.|...+..-.
T Consensus 4 ~CP~C~~~f~v~~ 16 (37)
T PF13719_consen 4 TCPNCQTRFRVPD 16 (37)
T ss_pred ECCCCCceEEcCH
Confidence 5777776665544
No 244
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.59 E-value=49 Score=22.89 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 029265 12 TLILQSALLCFFVFNS 27 (196)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (196)
.+++++++.++|++.+
T Consensus 6 ~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 6 FLLLGLLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444443333344333
No 245
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=31.59 E-value=40 Score=23.73 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=16.8
Q ss_pred eEEEEecCCCChhhhhhchHHH
Q 029265 54 IIIEAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 54 vtI~~f~D~~CP~C~~~~~~l~ 75 (196)
-.+++|.=-.||+|.++...+.
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~ 35 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLS 35 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHH
Confidence 3588999999999999444443
No 246
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=31.32 E-value=21 Score=15.42 Aligned_cols=6 Identities=17% Similarity=-0.003 Sum_probs=4.3
Q ss_pred ccccCC
Q 029265 191 FNTSFF 196 (196)
Q Consensus 191 ~GTPtF 196 (196)
.||||+
T Consensus 2 ~gTPTM 7 (13)
T PF10555_consen 2 SGTPTM 7 (13)
T ss_pred CCCccc
Confidence 488874
No 247
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=31.25 E-value=22 Score=26.54 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=12.2
Q ss_pred CCCChhhhhhchHHH
Q 029265 61 DPVCPDSRDAWPPLK 75 (196)
Q Consensus 61 D~~CP~C~~~~~~l~ 75 (196)
.-.||+|+..-|.|.
T Consensus 6 ei~CPhCRq~ipALt 20 (161)
T PF09654_consen 6 EIQCPHCRQTIPALT 20 (161)
T ss_pred cCcCchhhcccchhe
Confidence 458999999988763
No 248
>PF11021 DUF2613: Protein of unknown function (DUF2613); InterPro: IPR022566 This is a family of putative small secreted proteins expressed by Actinobacteria. The function is not known.
Probab=31.15 E-value=1.2e+02 Score=18.94 Aligned_cols=22 Identities=0% Similarity=-0.161 Sum_probs=10.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 029265 6 PNKNHATLILQSALLCFFVFNS 27 (196)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (196)
|+|.....++..++.++|.+.+
T Consensus 1 M~r~l~pa~aSaV~Gi~lG~~a 22 (56)
T PF11021_consen 1 MPRFLGPAAASAVVGIVLGVAA 22 (56)
T ss_pred CCcchhHHHHHHHHHHHHHHHH
Confidence 3455555555444444444333
No 249
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=31.09 E-value=15 Score=21.58 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=3.8
Q ss_pred Chhhhh
Q 029265 64 CPDSRD 69 (196)
Q Consensus 64 CP~C~~ 69 (196)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 666654
No 250
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=31.01 E-value=12 Score=20.82 Aligned_cols=14 Identities=14% Similarity=0.579 Sum_probs=8.3
Q ss_pred CCChhhhhhchHHH
Q 029265 62 PVCPDSRDAWPPLK 75 (196)
Q Consensus 62 ~~CP~C~~~~~~l~ 75 (196)
..||+|+..+..-.
T Consensus 3 ~~CP~C~~~~~v~~ 16 (38)
T TIGR02098 3 IQCPNCKTSFRVVD 16 (38)
T ss_pred EECCCCCCEEEeCH
Confidence 45777776655443
No 251
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=30.92 E-value=41 Score=21.03 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=14.9
Q ss_pred EEecCCCChhhhhhchHHH
Q 029265 57 EAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 57 ~~f~D~~CP~C~~~~~~l~ 75 (196)
..|.-..||+|.+..-.++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~ 20 (71)
T cd03060 2 ILYSFRRCPYAMRARMALL 20 (71)
T ss_pred EEEecCCCcHHHHHHHHHH
Confidence 4677889999998776665
No 252
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=30.63 E-value=23 Score=26.48 Aligned_cols=15 Identities=33% Similarity=0.738 Sum_probs=12.2
Q ss_pred CCCChhhhhhchHHH
Q 029265 61 DPVCPDSRDAWPPLK 75 (196)
Q Consensus 61 D~~CP~C~~~~~~l~ 75 (196)
.-.||+|+..-|.|.
T Consensus 9 ei~CPhCRQ~ipALt 23 (163)
T TIGR02652 9 EIRCPHCRQNIPALT 23 (163)
T ss_pred cCcCchhhcccchhe
Confidence 458999999988763
No 253
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=29.96 E-value=65 Score=19.58 Aligned_cols=21 Identities=0% Similarity=-0.089 Sum_probs=13.5
Q ss_pred chhHHHHHHHHHHHHHHHHHh
Q 029265 8 KNHATLILQSALLCFFVFNSC 28 (196)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (196)
|+...++.++++++.++++.+
T Consensus 15 rigGLi~A~vlfi~Gi~iils 35 (50)
T PF02038_consen 15 RIGGLIFAGVLFILGILIILS 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT
T ss_pred hccchHHHHHHHHHHHHHHHc
Confidence 455566777777776665553
No 254
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=29.34 E-value=52 Score=29.77 Aligned_cols=28 Identities=18% Similarity=0.491 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHH
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQ 79 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~ 79 (196)
....+++|+=+=|.||++.-|...+..+
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~ 69 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAAT 69 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHH
Confidence 5788999999999999999999876544
No 255
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=29.10 E-value=47 Score=20.86 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=16.9
Q ss_pred EEEEecCCCChhhhhhchHHH
Q 029265 55 IIEAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~ 75 (196)
++..|..+.||+|.+..-.++
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~ 21 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLE 21 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHH
Confidence 467889999999998776665
No 256
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=27.66 E-value=1.3e+02 Score=23.89 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=27.9
Q ss_pred EEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEe
Q 029265 55 IIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHL 91 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~ 91 (196)
.||.|..-.|+.|=-+...|.++.++ .+-|-+.||-
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHV 36 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHV 36 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecC
Confidence 48999999999999999999999887 4678888873
No 257
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=27.08 E-value=19 Score=21.05 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=12.5
Q ss_pred CCeEEEEec-CCCChhhhh
Q 029265 52 DAIIIEAFF-DPVCPDSRD 69 (196)
Q Consensus 52 a~vtI~~f~-D~~CP~C~~ 69 (196)
+.+++..-. ...||+|..
T Consensus 11 ~~~~~~~~~~~~~Cp~CG~ 29 (46)
T PRK00398 11 REVELDEYGTGVRCPYCGY 29 (46)
T ss_pred CEEEECCCCCceECCCCCC
Confidence 555555554 788999975
No 258
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=26.96 E-value=57 Score=21.90 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=14.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHH
Q 029265 3 SPSPNKNHATLILQSALLCFFVFNS 27 (196)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (196)
-|++.|++.-.+....+++.+++++
T Consensus 18 aPksIr~Tln~i~~v~~~vlLivla 42 (81)
T PF11364_consen 18 APKSIRGTLNMIGLVGLVVLLIVLA 42 (81)
T ss_pred CcHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3677787777665555554444443
No 259
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=26.94 E-value=85 Score=22.19 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=24.1
Q ss_pred EEEe-cCCCChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAF-FDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f-~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
+.+| -.-.||-++..+..+++..+...+++.+.|...
T Consensus 22 ~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v 59 (105)
T PF11009_consen 22 VLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDV 59 (105)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEG
T ss_pred EEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEE
Confidence 4444 456699999999999998887666688887654
No 260
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=26.80 E-value=50 Score=24.72 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=20.5
Q ss_pred EEEecCC------CChhhhhhchHHHHHHHhcCCcEEEEEEec
Q 029265 56 IEAFFDP------VCPDSRDAWPPLKQALQHYGPHVSLVVHLL 92 (196)
Q Consensus 56 I~~f~D~------~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~ 92 (196)
|++|+-. .||+|.+....|+ .+ .|.|..++.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~----~~--~V~~~e~DV 38 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILE----SF--RVKFDERDV 38 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHH----HC--CCcEEEEEC
Confidence 6677777 8999987655554 43 366665553
No 261
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=26.75 E-value=81 Score=19.17 Aligned_cols=18 Identities=17% Similarity=-0.016 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 029265 12 TLILQSALLCFFVFNSCS 29 (196)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (196)
-++|+++++.+++.++.+
T Consensus 4 ~~iV~i~iv~~lLg~~I~ 21 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSIC 21 (50)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 356667776666555554
No 262
>PF14255 Cys_rich_CPXG: Cysteine-rich CPXCG
Probab=26.71 E-value=23 Score=21.70 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=9.7
Q ss_pred CCChhhhhhchHH
Q 029265 62 PVCPDSRDAWPPL 74 (196)
Q Consensus 62 ~~CP~C~~~~~~l 74 (196)
..||||......+
T Consensus 1 i~CPyCge~~~~~ 13 (52)
T PF14255_consen 1 IQCPYCGEPIEIL 13 (52)
T ss_pred CCCCCCCCeeEEE
Confidence 3799999876553
No 263
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=26.55 E-value=7.3 Score=26.24 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=11.5
Q ss_pred EEEEecCCCChhhhhhchH
Q 029265 55 IIEAFFDPVCPDSRDAWPP 73 (196)
Q Consensus 55 tI~~f~D~~CP~C~~~~~~ 73 (196)
.|+....+.||+|.+-...
T Consensus 59 vVENMs~~~Cp~Cg~~~~i 77 (81)
T PF10609_consen 59 VVENMSYFVCPHCGERIYI 77 (81)
T ss_dssp EEECT-EEE-TTT--EEET
T ss_pred EEECCCccCCCCCCCeecC
Confidence 3777889999999986544
No 264
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=25.36 E-value=79 Score=25.77 Aligned_cols=39 Identities=10% Similarity=0.265 Sum_probs=33.2
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVH 90 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~ 90 (196)
.+--|..|....||-=..--..+++++++|.+.++|.+.
T Consensus 102 ~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V 140 (237)
T PF00837_consen 102 NRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV 140 (237)
T ss_pred CCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh
Confidence 455789999999999888888999999999987777664
No 265
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=25.28 E-value=25 Score=26.68 Aligned_cols=32 Identities=3% Similarity=0.062 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCchHHHhhccCC
Q 029265 139 NMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 171 (196)
Q Consensus 139 ~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~ 171 (196)
+.+-.++.+.+.+.-.+ .|...--.|...+++
T Consensus 102 ~IsveEIqDiVE~~L~~-~~~~ay~rfa~~~~~ 133 (154)
T PRK00464 102 EVPSKEIGELVMEELKK-LDEVAYVRFASVYRS 133 (154)
T ss_pred CCCHHHHHHHHHHHHHh-cCCEEEEEhhhhcCC
Confidence 45666666666555555 454321345555544
No 266
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=25.21 E-value=1.1e+02 Score=17.46 Aligned_cols=11 Identities=9% Similarity=0.117 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 029265 11 ATLILQSALLC 21 (196)
Q Consensus 11 ~~~~~~~~~~~ 21 (196)
.+.|+++++.+
T Consensus 6 IaIIv~V~vg~ 16 (38)
T PF02439_consen 6 IAIIVAVVVGM 16 (38)
T ss_pred hhHHHHHHHHH
Confidence 34444444433
No 267
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=25.18 E-value=54 Score=22.94 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=18.6
Q ss_pred CCCCeEEEEecCCCChhhhhhchH
Q 029265 50 DSDAIIIEAFFDPVCPDSRDAWPP 73 (196)
Q Consensus 50 ~~a~vtI~~f~D~~CP~C~~~~~~ 73 (196)
++....=++..+..||.|..-.+.
T Consensus 36 ~~~~~VeIevG~~~cP~Cge~~~~ 59 (102)
T PF04475_consen 36 PDLDYVEIEVGDTICPKCGEELDS 59 (102)
T ss_pred CCCCeEEEecCcccCCCCCCccCc
Confidence 347777788899999999875543
No 268
>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtii and Entamoeba histolytica S27, and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. They contain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1QXF_A 3IZ6_X 2XZN_6 2XZM_6 3U5G_b 3IZB_X 3U5C_b.
Probab=24.36 E-value=17 Score=22.57 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=9.0
Q ss_pred EecCCCChhhhhhc
Q 029265 58 AFFDPVCPDSRDAW 71 (196)
Q Consensus 58 ~f~D~~CP~C~~~~ 71 (196)
.|.|-.||.|.+-.
T Consensus 4 ~Fm~VkCp~C~~~q 17 (55)
T PF01667_consen 4 YFMDVKCPGCYNIQ 17 (55)
T ss_dssp -EEEEE-TTT-SEE
T ss_pred cEEEEECCCCCCee
Confidence 48899999998753
No 269
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.29 E-value=15 Score=20.57 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=10.6
Q ss_pred cCCCChhhhhhchHH
Q 029265 60 FDPVCPDSRDAWPPL 74 (196)
Q Consensus 60 ~D~~CP~C~~~~~~l 74 (196)
++|.|+.|.+.+..+
T Consensus 4 Y~y~C~~Cg~~fe~~ 18 (41)
T smart00834 4 YEYRCEDCGHTFEVL 18 (41)
T ss_pred EEEEcCCCCCEEEEE
Confidence 567888888855544
No 270
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=23.59 E-value=38 Score=19.24 Aligned_cols=17 Identities=35% Similarity=0.833 Sum_probs=11.7
Q ss_pred CChhhhhhch---HHHHHHH
Q 029265 63 VCPDSRDAWP---PLKQALQ 79 (196)
Q Consensus 63 ~CP~C~~~~~---~l~~~~~ 79 (196)
.||.|...|= +++++++
T Consensus 21 ~C~~C~G~W~d~~el~~~~e 40 (41)
T PF13453_consen 21 VCPSCGGIWFDAGELEKLLE 40 (41)
T ss_pred ECCCCCeEEccHHHHHHHHh
Confidence 4999999883 3555544
No 271
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=23.45 E-value=96 Score=16.12 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 029265 12 TLILQSALLCFFV 24 (196)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (196)
++|+.+++++.++
T Consensus 9 ~livVLFILLIIi 21 (26)
T TIGR01732 9 ALIVVLFILLVIV 21 (26)
T ss_pred HHHHHHHHHHHHh
Confidence 4555555555443
No 272
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=23.45 E-value=1.8e+02 Score=29.69 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=31.8
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcEEEEEEecCC
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHVSLVVHLLPL 94 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v~~~~~~~pl 94 (196)
..-+++.|.++.--.=..|+..+.+..+ .|++++++|+++-
T Consensus 170 ~~p~~ilYge~gt~~f~~Fh~~l~k~a~--~gk~~yv~Rh~~~ 210 (1470)
T KOG1879|consen 170 ESPVAILYGELGTIDFRNFHKLLEKLAK--NGKINYVFRHFLR 210 (1470)
T ss_pred CCcEEEEEcccchHhHHHHHHHHHHHHh--cCCeeEEEEeccc
Confidence 5558888988887666778888877666 4789999998763
No 273
>smart00355 ZnF_C2H2 zinc finger.
Probab=23.32 E-value=52 Score=15.44 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=11.7
Q ss_pred CCChhhhhhchHHHHHH
Q 029265 62 PVCPDSRDAWPPLKQAL 78 (196)
Q Consensus 62 ~~CP~C~~~~~~l~~~~ 78 (196)
+.|+.|......-..+.
T Consensus 1 ~~C~~C~~~f~~~~~l~ 17 (26)
T smart00355 1 YRCPECGKVFKSKSALK 17 (26)
T ss_pred CCCCCCcchhCCHHHHH
Confidence 47888888776655443
No 274
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=23.09 E-value=52 Score=28.54 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=14.0
Q ss_pred ecCCCChhhhhhchHHHHHHHhcCCc
Q 029265 59 FFDPVCPDSRDAWPPLKQALQHYGPH 84 (196)
Q Consensus 59 f~D~~CP~C~~~~~~l~~~~~~y~~~ 84 (196)
..--.||+|+. .+.++|.|+
T Consensus 149 i~g~l~p~~~~------~L~~~y~Gd 168 (358)
T PF08298_consen 149 IEGELCPWCRK------RLLEEYGGD 168 (358)
T ss_pred cCCCcCHHHHH------HHHHHhCCC
Confidence 35668999973 566778764
No 275
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=22.86 E-value=34 Score=25.23 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=12.4
Q ss_pred HHHHhccCcccccCC
Q 029265 182 FKVTQKFFSFNTSFF 196 (196)
Q Consensus 182 ~k~a~~~GV~GTPtF 196 (196)
-..+.++||.|.|||
T Consensus 81 ~~LA~~fgV~siPTL 95 (132)
T PRK11509 81 EAIGDRFGVFRFPAT 95 (132)
T ss_pred HHHHHHcCCccCCEE
Confidence 456788999999986
No 276
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=22.71 E-value=60 Score=19.99 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=14.7
Q ss_pred EEecCCCChhhhhhchHHH
Q 029265 57 EAFFDPVCPDSRDAWPPLK 75 (196)
Q Consensus 57 ~~f~D~~CP~C~~~~~~l~ 75 (196)
..|..+.||+|.+..-.++
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~ 20 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLA 20 (73)
T ss_pred EEEeCCCCccHHHHHHHHH
Confidence 4688899999998766554
No 277
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=22.68 E-value=32 Score=23.51 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=13.9
Q ss_pred CeEEEEecCCCChhhhhh
Q 029265 53 AIIIEAFFDPVCPDSRDA 70 (196)
Q Consensus 53 ~vtI~~f~D~~CP~C~~~ 70 (196)
.+.......+.||+|++-
T Consensus 27 ~ie~~~~~~~~Cp~C~~~ 44 (89)
T COG1997 27 EIEAQQRAKHVCPFCGRT 44 (89)
T ss_pred HHHHHHhcCCcCCCCCCc
Confidence 344566788999999986
No 278
>PF14353 CpXC: CpXC protein
Probab=22.10 E-value=21 Score=25.73 Aligned_cols=16 Identities=19% Similarity=0.540 Sum_probs=13.1
Q ss_pred EecCCCChhhhhhchH
Q 029265 58 AFFDPVCPDSRDAWPP 73 (196)
Q Consensus 58 ~f~D~~CP~C~~~~~~ 73 (196)
.|+.+.||.|++-...
T Consensus 35 ~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 35 SLFSFTCPSCGHKFRL 50 (128)
T ss_pred CcCEEECCCCCCceec
Confidence 5778999999997754
No 279
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.07 E-value=1.7e+02 Score=24.36 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCChhhhhhchHHHHHHHhcCCcE
Q 029265 52 DAIIIEAFFDPVCPDSRDAWPPLKQALQHYGPHV 85 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~~~~~l~~~~~~y~~~v 85 (196)
.+..++-|+---|.-|++..|.+..+..+|++-|
T Consensus 21 ~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aV 54 (288)
T KOG0908|consen 21 GKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAV 54 (288)
T ss_pred ceEEEEEEEecccchHHhhhhHHHHhhhhCcccE
Confidence 6788889999999999999999999999998644
No 280
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=21.50 E-value=24 Score=22.26 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=11.5
Q ss_pred EecCCCChhhhhhc
Q 029265 58 AFFDPVCPDSRDAW 71 (196)
Q Consensus 58 ~f~D~~CP~C~~~~ 71 (196)
.|.|-.||.|.+-.
T Consensus 8 ~F~~VkCp~C~n~q 21 (59)
T PRK00415 8 RFLKVKCPDCGNEQ 21 (59)
T ss_pred eEEEEECCCCCCeE
Confidence 48899999998754
No 281
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=21.23 E-value=1.4e+02 Score=16.04 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=8.4
Q ss_pred CCCchhHHHHHHHHHHHH
Q 029265 5 SPNKNHATLILQSALLCF 22 (196)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (196)
||+-..-+++|.+.++.+
T Consensus 7 spttgvvti~viliavaa 24 (33)
T PF09049_consen 7 SPTTGVVTIIVILIAVAA 24 (33)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred CCCccEEEehhHHHHHHH
Confidence 444444555544444433
No 282
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=21.22 E-value=9.5 Score=26.24 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=13.9
Q ss_pred CCeEEEEecCCCChhhhh
Q 029265 52 DAIIIEAFFDPVCPDSRD 69 (196)
Q Consensus 52 a~vtI~~f~D~~CP~C~~ 69 (196)
.++.+.....+.||+|.+
T Consensus 27 ~kie~~q~a~y~CpfCgk 44 (90)
T PTZ00255 27 KKIEISQHAKYFCPFCGK 44 (90)
T ss_pred HHHHHHHhCCccCCCCCC
Confidence 345677778999999974
No 283
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=20.15 E-value=1.2e+02 Score=24.91 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=37.3
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHhhcCCCchHHHhhccCCchhhHHHHHHHHHHhccCcc
Q 029265 131 KFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKVTQKFFSF 191 (196)
Q Consensus 131 ~~~~~~~~~~t~~~~~~~l~~~A~~~~g~~~~~~~~~~~~~~~~~~~~r~~~k~a~~~GV~ 191 (196)
+..|+. ++|.+++.+.+.+..++ |.+ .-.+.++ |..+...++++++.-+++||.
T Consensus 52 ei~nSa--~~tLeeIi~~m~~a~~~--Gk~-VvRLhSG--DpsiYgA~~EQm~~L~~~gI~ 105 (254)
T COG2875 52 EIVNSA--SLTLEEIIDLMVDAVRE--GKD-VVRLHSG--DPSIYGALAEQMRELEALGIP 105 (254)
T ss_pred EEEecC--cCCHHHHHHHHHHHHHc--CCe-EEEeecC--ChhHHHHHHHHHHHHHHcCCC
Confidence 444544 67888888877765544 776 3555555 677888888888887778864
No 284
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=20.02 E-value=2.4e+02 Score=19.07 Aligned_cols=9 Identities=0% Similarity=0.349 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 029265 13 LILQSALLC 21 (196)
Q Consensus 13 ~~~~~~~~~ 21 (196)
++++++||+
T Consensus 30 ILivLVIIi 38 (85)
T PF10717_consen 30 ILIVLVIII 38 (85)
T ss_pred HHHHHHHHH
Confidence 334444443
Done!