BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029266
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 253 bits (646), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 127/223 (56%), Positives = 154/223 (69%), Gaps = 27/223 (12%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MEC 33
MGNK+++LAGD L+SRA ALA+LK+TEV+ M+
Sbjct: 126 MGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDY 185
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
YMQKTY KTA+L+SNSCKAVA L+GQ EVA LAFEYG+NLGLA+QLIDDILDFTGTSAS
Sbjct: 186 YMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSAS 245
Query: 94 LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
LGK SL+D+R+G+ITAPILFAMEEFPQLR ++ +P NVD+ LEYLGKS GIQR E
Sbjct: 246 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARE 305
Query: 154 XXXXXXXXXXXXIDSLPETHDVDATNARTALVHITQKIITRNK 196
I SLPET + D +R AL+ +T ++ITRNK
Sbjct: 306 LAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 253 bits (645), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 127/223 (56%), Positives = 155/223 (69%), Gaps = 27/223 (12%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MEC 33
MGNK+++LAGD L+SRA ALA+LK+TEV+ M+
Sbjct: 126 MGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTAARYSMDY 185
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
YMQKTY KTA+L+SNSCKAVA L+GQ EVA LAFEYG+NLGLA+QLIDDILDFTGTSAS
Sbjct: 186 YMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSAS 245
Query: 94 LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
LGK SL+D+R+G+ITAPILFAMEEFPQLR ++ + +P NVD+ LEYLGKS GIQR E
Sbjct: 246 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVAADPRNVDIALEYLGKSKGIQRARE 305
Query: 154 XXXXXXXXXXXXIDSLPETHDVDATNARTALVHITQKIITRNK 196
I SLPET + D +R AL+ +T ++ITRNK
Sbjct: 306 LAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 29/138 (21%)
Query: 6 AILAGDLLISRALVALASLKHTEV-------IME--------------------CYMQKT 38
AI G L++RAL +A++ +++ I+E Y+++
Sbjct: 108 AIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRI 167
Query: 39 YNKTAALVSNSCKAVAYLSGQREEVATLAF-EYGKNLGLAYQLIDDILDFTGTSASLGKA 97
KTA L+ SC A LS Q +E +T ++G +G++YQ+IDDILD+T A+LGK
Sbjct: 168 NRKTAILIEASCHLGA-LSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKP 226
Query: 98 SLTDLRNGIITAPILFAM 115
+D+RNG IT P++ A+
Sbjct: 227 VGSDIRNGHITYPLMAAI 244
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 1 MGNKLAILA-GDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQ 59
+ N A++A G++L L A +L TE + Y++ KTAAL S + + + G
Sbjct: 144 LANASAVIAEGEVL---QLTAAQNLATTE---DIYLRVIRGKTAALFSAATEVGGIIGGA 197
Query: 60 REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAM 115
E+ F+YG LG+A+Q++DD+LD+ G SA +GK + D R +T P++ A+
Sbjct: 198 PEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAV 253
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 29/199 (14%)
Query: 3 NKLAILAGDLLISRALVALASLKHTEVI-------------------------MECYMQK 37
N +AILAGD+L++ A ++ L V +E Y
Sbjct: 136 NSVAILAGDILLAHASGLMSQLGTDTVAHFAETFGELVTGQMRETVGPRDTDPIEHYTNV 195
Query: 38 TYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKA 97
KT L++++ A +G E +G +G+ +Q++DDI+D + GK
Sbjct: 196 IREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKT 255
Query: 98 SLTDLRNGIITAPILFAM-EEFP---QLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
TDLR G+ T P+L+A+ E+ P +LR + ++ V+ +LE L +S G Q +
Sbjct: 256 PGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALD 315
Query: 154 XXXXXXXXXXXXIDSLPET 172
+D LP++
Sbjct: 316 EVYRYMDIANAELDRLPDS 334
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 1 MGNKLAILAGDLLISRALVALASL--------------------------------KHTE 28
G +AILAGDLL S+A A+A K +
Sbjct: 105 WGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKST 164
Query: 29 VIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFT 88
V +E YM+ KT AL S K + EE +G+N+G+A+Q+ DD+LD
Sbjct: 165 VTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLI 224
Query: 89 GTSASLGKASLTDLRNG 105
LGK +D+R G
Sbjct: 225 ADEKKLGKPVGSDIRKG 241
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 30/147 (20%)
Query: 2 GNKLAILAGDLLI----------------SRALVALASLKHTEVI----------MECYM 35
G+K A+ AGDL++ AL + + E+I E Y+
Sbjct: 101 GDKAAVAAGDLVLVSAFHTVEEAGNNKARRAALNVIGKMSEAELIEQLSRYKPITKEEYL 160
Query: 36 QKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 95
+ K+ AL + + A L G E+ + G +G YQ+ DDI+DF G +G
Sbjct: 161 RIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDFAGME-KIG 216
Query: 96 KASLTDLRNGIITAPILFAMEEFPQLR 122
K DL+NG+ + P++ AME+FP+ R
Sbjct: 217 KDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 30/147 (20%)
Query: 2 GNKLAILAGDLLI----------------SRALVALASLKHTEVI----------MECYM 35
G+K A+ AGDL++ AL + + E+I E Y+
Sbjct: 101 GDKAAVAAGDLVLVSAFHTVEEIGNNKARRAALNVIGKMSEAELIEQLSRYKPITKEEYL 160
Query: 36 QKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 95
+ K+ AL + + A L G E+ + G +G YQ+ DDI+DF G +G
Sbjct: 161 RIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDFAGME-KIG 216
Query: 96 KASLTDLRNGIITAPILFAMEEFPQLR 122
K DL+NG+ + P++ AME+FP+ R
Sbjct: 217 KDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 30/147 (20%)
Query: 2 GNKLAILAGDLLI----------------SRALVALASLKHTEVI----------MECYM 35
G+K A+ AGDL++ AL + + E+I E Y+
Sbjct: 101 GDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAALNVIGKMSEAELIEQLSRYKPITKEEYL 160
Query: 36 QKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 95
+ K+ AL + + A L G E+ + G +G YQ+ DDI+DF G +G
Sbjct: 161 RIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDFAGME-KIG 216
Query: 96 KASLTDLRNGIITAPILFAMEEFPQLR 122
K DL+NG+ + P++ AME+FP+ R
Sbjct: 217 KDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 30/147 (20%)
Query: 2 GNKLAILAGDLLI----------------SRALVALASLKHTEVI----------MECYM 35
G+K A+ AGDL++ AL + + E+I E Y+
Sbjct: 101 GDKAAVAAGDLVLVSAFHTVEEAGNNKARRAALNVIGKMSEAELIEQLSRYKPITKEEYL 160
Query: 36 QKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 95
+ K+ AL + + A L G E+ + G +G YQ+ DDI+DF G +G
Sbjct: 161 RIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDFAGME-KIG 216
Query: 96 KASLTDLRNGIITAPILFAMEEFPQLR 122
K DL+NG+ + P++ AME+FP+ R
Sbjct: 217 KDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 30/147 (20%)
Query: 2 GNKLAILAGDLLISRA----------------LVALASLKHTEVI----------MECYM 35
G+K A+ AGDL++ A L + + E+I E Y+
Sbjct: 101 GDKAAVAAGDLVLVSAEHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKPITKEEYL 160
Query: 36 QKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 95
+ K+ AL + + A L G E+ + G +G YQ+ DDI+DF G +G
Sbjct: 161 RIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDFAGME-KIG 216
Query: 96 KASLTDLRNGIITAPILFAMEEFPQLR 122
K DL+NG+ + P++ AME+FP+ R
Sbjct: 217 KDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 30/147 (20%)
Query: 2 GNKLAILAGDLLISRA----------------LVALASLKHTEVI----------MECYM 35
G+K A+ AGDL++ A L + + E+I E Y+
Sbjct: 101 GDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKPITKEEYL 160
Query: 36 QKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 95
+ K+ AL + + A L G E+ + G +G YQ+ DDI+DF G +G
Sbjct: 161 RIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDIMDFAGME-KIG 216
Query: 96 KASLTDLRNGIITAPILFAMEEFPQLR 122
K DL+NG+ + P++ AME+FP+ R
Sbjct: 217 KDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 25 KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84
++ + E Y++ K+ AL + + A L G E+ + G +G YQ+ DDI
Sbjct: 150 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDI 206
Query: 85 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 122
+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 207 MDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 25 KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84
++ + E Y++ K+ AL + + A L G E+ + G +G YQ+ DDI
Sbjct: 150 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDI 206
Query: 85 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 122
+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 207 MDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 25 KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84
++ + E Y++ K+ AL + + A L G E+ + G +G YQ+ DDI
Sbjct: 150 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDI 206
Query: 85 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 122
+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 207 MDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 25 KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84
++ + E Y++ K+ AL + + A L G E+ + G +G YQ+ DDI
Sbjct: 150 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDI 206
Query: 85 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 122
+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 207 MDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 25 KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84
++ + E Y++ K+ AL + + A L G E+ + G +G YQ+ DDI
Sbjct: 150 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDI 206
Query: 85 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 122
+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 207 MDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 25 KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84
++ + E Y++ K+ AL + + A L G E+ + G +G YQ+ DDI
Sbjct: 150 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDI 206
Query: 85 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 122
+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 207 MDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 25 KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84
++ + E Y++ K+ AL + + A L G E+ + G +G YQ+ DDI
Sbjct: 150 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDI 206
Query: 85 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 122
+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 207 MDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 25 KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84
++ + E Y++ K+ AL + + A L G E+ + G +G YQ+ DDI
Sbjct: 150 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDI 206
Query: 85 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 122
+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 207 MDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 25 KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84
++ + E Y++ K+ AL + + A L G E+ + G +G YQ+ DDI
Sbjct: 150 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDI 206
Query: 85 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 122
+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 207 MDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 25 KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84
++ + E Y++ K+ AL + + A L G E+ + G +G YQ+ DDI
Sbjct: 150 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTIGTIYQMFDDI 206
Query: 85 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 122
+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 207 MDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 29/146 (19%)
Query: 1 MGNKLAILAGDLLISRALVALAS---------------LKHTEV----IMECY---MQKT 38
GN A++ GD+ S+A L+ L E+ + EC+ QK
Sbjct: 96 FGNFNAVMLGDVFYSKAFFELSKMGELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKY 155
Query: 39 Y----NKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASL 94
+ +KTA + S K++A L + A + ++G N G+A+Q+IDD+LD T + +L
Sbjct: 156 WRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTL 212
Query: 95 GKASLTDLRNGIITAPILFAMEEFPQ 120
GK + +D + G T P L E+ Q
Sbjct: 213 GKPNFSDFKEGKTTLPYLLLYEKLNQ 238
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 27/142 (19%)
Query: 1 MGNKLAILAGDLLISRA---LVALASLKHTEVIMEC------------------------ 33
G ++L GD L +RA +V S+K E++
Sbjct: 124 WGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAV 183
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
Y++ KTA L + + +A A +G + +YG NLGLA+QL DD LD+ G + +
Sbjct: 184 YLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATET 243
Query: 94 LGKASLTDLRNGIITAPILFAM 115
LGK + D R G T P+L A+
Sbjct: 244 LGKNAGDDFREGKATLPLLLAI 265
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 28 EVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDF 87
++ ++ Y+ + KTA L + SC A L+G + V + G +G AYQ++DDILD+
Sbjct: 163 DITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDY 222
Query: 88 TGTSASLGKASLTDLRNGI 106
G K L DLR+G+
Sbjct: 223 AGDPKRTQKPVLEDLRSGV 241
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 28 EVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDF 87
++ ++ Y+ + KTA L + SC A L+G + V + G +G AYQ++DDILD+
Sbjct: 170 DITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDY 229
Query: 88 TGTSASLGKASLTDLRNGI 106
G K L DLR+G+
Sbjct: 230 AGDPKRTQKPVLEDLRSGV 248
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 30 IMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTG 89
+ EC ++ NKT AL++ + A L G E A +YG +LGLA+Q +DD+L G
Sbjct: 173 VEEC-LEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWG 231
Query: 90 TSASLGKASLTDLRNGIITAPIL 112
+ GK + +DLR + P++
Sbjct: 232 DPDATGKQTWSDLRQRKKSLPVV 254
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 19 VALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAY 78
+A L H E I ++KTAAL+ S A L G +EE ++ +GL +
Sbjct: 165 MAEVGLDHLEFI-------HHHKTAALLQGSVVLGAILGGGKEEEVAKLRKFANCIGLLF 217
Query: 79 QLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSS 129
Q++DDILD T +S LGK + DL T P L +E+ + +N +
Sbjct: 218 QVVDDILDVTKSSKELGKTAGKDLVADKTTYPKLIGVEKSKEFADRLNREA 268
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKAS 98
+KT AL+ + + A +G + A + Y +++GLA+Q+ DDILD G +A+LGK
Sbjct: 181 HKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQ 240
Query: 99 LTDLRNGIITAPILFAMEE 117
D + G T P L +E+
Sbjct: 241 GADQQLGKSTYPALLGLEQ 259
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKAS 98
+KT AL+ + + A +G + A + Y +++GLA+Q+ DDILD G +A+LGK
Sbjct: 180 HKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQ 239
Query: 99 LTDLRNGIITAPILFAMEE 117
D + G T P L +E+
Sbjct: 240 GADQQLGKSTYPALLGLEQ 258
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 41 KTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLT 100
KT AL+ +C+A A ++G + +G+ +GL++QL DD+LD T +A++GKA+
Sbjct: 221 KTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGK 280
Query: 101 DLRNG 105
D G
Sbjct: 281 DAARG 285
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKAS 98
+KT AL+ + + A +G + A + Y +++GLA+Q+ DDILD G +A+LGK
Sbjct: 204 HKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQ 263
Query: 99 LTDLRNGIITAPILFAMEE 117
D + G T P L +E+
Sbjct: 264 GADQQLGKSTYPALLGLEQ 282
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDF 87
Y + Y KTA+L + S AY G EE+A +G LG AYQ++DDIL+F
Sbjct: 159 YFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEF 212
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGK 96
KT AL+ + A L+ Q EEV L ++ + GLA+Q+ DD+LD T T A LGK
Sbjct: 184 KKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGK 240
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 36 QKTYNKTAALVSNSCKAVAYLSGQ--REEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
Q +KT AL+ S + A +GQ E++A L Y +GLA+Q+ DDI+D T + +
Sbjct: 175 QMHVHKTGALIKASVRMGALSTGQVKPEQLAKLD-AYAHAIGLAFQVQDDIIDLTSDTET 233
Query: 94 LGKASLTDLRNGIITAPILFAME 116
LGK +D T P L ++
Sbjct: 234 LGKTQFSDAEANKATYPKLLGLD 256
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 26/141 (18%)
Query: 27 TEVI----MECYMQKTYNKTAALVS--NSCKAVAY-----------LSGQREEVATLAFE 69
TEVI ++ Y++ N++ L N K AY ++G ++
Sbjct: 185 TEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLH 244
Query: 70 YGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAME----EFPQ----L 121
YG ++G+A+QL DD+L G A GK + D+R G T + A++ + P+ +
Sbjct: 245 YGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAI 304
Query: 122 RAFINSSSDNPANVDVILEYL 142
RA + + +P ++ VI E++
Sbjct: 305 RAGVGKVT-SPEDIAVITEHI 324
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 25 KHTEVIMECYMQKTYNKTAALVSNSCK-AVAYLSGQREEVATLAFEYGKNLGLAYQLIDD 83
+ EV ++ Y++ KT AL++ + K V +S R +A A+ +G G+A+Q+IDD
Sbjct: 168 RWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRG-LAEAAWNFGMAAGVAFQIIDD 226
Query: 84 ILDFTGTSASLGKASLTDLRN 104
+LD G GK D++
Sbjct: 227 VLDIYGDPKKFGKEIGKDIKE 247
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKAS 98
+KT AL+ S A SG+ E+ A + Y + +GLA+Q+ DDILD +A+LGK
Sbjct: 187 HKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQ 246
Query: 99 LTDLRNGIITAPILFAM 115
D+ T P L +
Sbjct: 247 GADIARDKPTYPALLGL 263
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKAS 98
+KT AL+ S A SG+ E+ A + Y + +GLA+Q+ DDILD +A+LGK
Sbjct: 180 HKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQ 239
Query: 99 LTDLRNGIITAPILFAM 115
D+ T P L +
Sbjct: 240 GADIARDKPTYPALLGL 256
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 36/188 (19%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVIM---------------------------EC 33
NK+++LAGD L++ +LV + E+I E
Sbjct: 106 FNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEV 165
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
Y KTAAL + +A A EE A G+ +G+ +Q+ DDI D+ S
Sbjct: 166 YFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYFD-SKK 224
Query: 94 LGKASLTDLRNGIITAPILFAM----EEFPQLRAF-INSSSDNPANVDVILEYLGKSHGI 148
+GK + D+ G +T P L+A+ + + + AF + + P + ++E+ + GI
Sbjct: 225 IGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGI 284
Query: 149 Q---RTTE 153
+ RT E
Sbjct: 285 EYACRTIE 292
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 45/157 (28%)
Query: 1 MGNKLAILAGDLLISRALVAL---------ASLKHTEVIMEC------------------ 33
G +A+LAGD L++ A+ L ++LK T++I +
Sbjct: 135 FGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINED 194
Query: 34 ----------YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDD 83
YM KT L+ S + A L+ E +G LGLA+Q+ DD
Sbjct: 195 KEEISLKELDYMH--LKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDD 252
Query: 84 ILDFTGTSASLGKASLTDL---RNGIITAPILFAMEE 117
ILD G + LGK D +N IT +F +EE
Sbjct: 253 ILDVVGNAKDLGKNVHKDQESNKNNYIT---IFGLEE 286
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKAS 98
NKT AL+ + + A +G++ + Y + +GLA+Q+ DDILD + +LGK
Sbjct: 186 NKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQ 245
Query: 99 LTDLRNGIITAPILFAME 116
+D T P L +E
Sbjct: 246 GSDQELNKSTYPALLGLE 263
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAF-EYGKNLGLAYQLIDDILDFTGTSASLGKAS 98
KT AL+ + +A + GQ E A+ ++ GLA+Q+ DDILD + A +GKA+
Sbjct: 183 EKTGALLHYAVQA-GLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKAT 241
Query: 99 LTD 101
D
Sbjct: 242 QKD 244
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGK 96
KT AL+S + +A A L+G T Y LGLA+Q+ DDILD G + GK
Sbjct: 178 GKTGALISFAAQAGAILAGADRGPLT---AYATALGLAFQIADDILDVEGNEEAAGK 231
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGK 96
KT AL+S + +A A L+G T Y LGLA+Q+ DDILD G + GK
Sbjct: 177 GKTGALISFAAQAGAILAGADRGPLT---AYATALGLAFQIADDILDVEGNEEAAGK 230
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 61 EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQ 120
E++ + YGK++GL +Q+ DD LD + LGK +D N T LF ++ +
Sbjct: 209 EQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEE 268
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 41 KTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLT 100
KT AL++ + + A ++ + Y +LG+ +Q+ DD+LD G A LGK +
Sbjct: 177 KTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGS 236
Query: 101 DLRN 104
DL N
Sbjct: 237 DLEN 240
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 31 MECYMQKT-----------YNKTAALVSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAY 78
++CY + T +KTA L+S S SG + EE+ +G +GL +
Sbjct: 167 LDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCF 226
Query: 79 QLIDDILDFTGTSASLGKASLTD 101
Q++DDI+D T GK + D
Sbjct: 227 QVLDDIIDVTQDEEESGKTTHLD 249
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 31 MECYMQKT-----------YNKTAALVSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAY 78
++CY + T +KTA L+S S SG + EE+ +G +GL +
Sbjct: 174 LDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCF 233
Query: 79 QLIDDILDFTGTSASLGKASLTD 101
Q++DDI+D T GK + D
Sbjct: 234 QVLDDIIDVTQDEEESGKTTHLD 256
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 41 KTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLT 100
+ AL++ AY G G LG A+Q++DD+L+ G A GK
Sbjct: 183 RLGALLAGKTPPAAYEEG------------GLRLGTAFQIVDDVLNLEGGEAY-GKERAG 229
Query: 101 DLRNGIITAPILFAMEEFP 119
DL G T +L +EE P
Sbjct: 230 DLYEGKRTLILLRFLEEAP 248
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 74 LGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAME---EFPQLRAFINSSSD 130
+G +Q+ DD LD G S GK +D++N +T P++ E E +++ N +
Sbjct: 279 MGEYFQIHDDYLDIFGDSTKTGKVG-SDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKN 337
Query: 131 NPANVDVILEYLGKSHGIQRTTE 153
N A V VI + L + + I++ E
Sbjct: 338 NLACVKVI-DSLYEQYKIRKHYE 359
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 74 LGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAME---EFPQLRAFINSSSD 130
+G +Q+ DD LD G S GK +D++N +T P++ E E +++ N +
Sbjct: 278 MGEYFQIHDDYLDIFGDSTKTGKVG-SDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKN 336
Query: 131 NPANVDVILEYLGKSHGIQRTTE 153
N A V VI + L + + I++ E
Sbjct: 337 NLACVKVI-DSLYEQYKIRKHYE 358
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 32/119 (26%)
Query: 2 GNKLAILAGDLLISRALVALASLKHTEVI------------------------------- 30
G +A+LAGD L+S A LAS +EV
Sbjct: 96 GEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISNV 155
Query: 31 -MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFT 88
+E +KTAAL+ S + G +E ++ + +GL +Q++DDILD T
Sbjct: 156 GLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVT 214
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTS 91
+KTAAL+ S + G +E ++ + +GL +Q++DDILD T +S
Sbjct: 191 HKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS 242
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASL 99
+KTA L++ + K + E + ++ G LGL +Q+ DDI+D T + GK +
Sbjct: 173 HKTARLIAAALKXGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTN 232
Query: 100 TDLR 103
D+
Sbjct: 233 NDIH 236
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 32 ECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTS 91
E Y+ NKT L + + + LS +L + LG+ YQ+ DD L+
Sbjct: 165 EMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLV-PFINLLGIIYQIRDDYLNLKDFQ 223
Query: 92 ASLGKASLTDLRNGIITAPILFAM 115
S K D+ G ++ PI+ A+
Sbjct: 224 MSSEKGFAEDITEGKLSFPIVHAL 247
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 40 NKTAALVSNSCK-AVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKAS 98
KT AL+ S + A G E Y K +GLA+Q+ DDILD + +LGK
Sbjct: 186 RKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTR 245
Query: 99 LTDLRNGIITAPILFAM 115
D + P L +
Sbjct: 246 GKDRDHNKPNYPALLGL 262
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 32 ECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTS 91
E Y KT L + + S +E++ L LGL +Q+ DD +
Sbjct: 143 EEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLL----NTLGLFFQIRDDYANLHSKE 198
Query: 92 ASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDV 137
S K+ DL G + P + A+ P+ N N+D+
Sbjct: 199 YSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDI 244
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 12 LLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYG 71
LL+ A+ + EV E + T AL + A L G L G
Sbjct: 146 LLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLL---G 202
Query: 72 KNLGLAYQLIDDILDFTGTSASLGK 96
+ G+A+Q+ DD+ D G+ +GK
Sbjct: 203 EXFGVAFQIYDDLXDILGSFEKVGK 227
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 41 KTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDF 87
KT +L S AY S + + GK LG+ YQ+IDD +D+
Sbjct: 168 KTGSLFKLSTVLSAYASKHYNTKQQM-LDVGKYLGIIYQVIDDFVDY 213
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 41 KTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDF 87
KT +L S AY S + + GK LG+ YQ+IDD +D+
Sbjct: 168 KTGSLFKLSTVLSAYASKHYNTKQQM-LDVGKYLGIIYQVIDDFVDY 213
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 41 KTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILD 86
KTA L+ + + G+RE + T A + G LG+ YQ DD D
Sbjct: 164 KTAPLIEAALVMPLVILGRRELIET-AKKLGTKLGILYQYSDDYSD 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,686,938
Number of Sequences: 62578
Number of extensions: 159700
Number of successful extensions: 512
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 73
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)