BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029266
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
Length = 422
Score = 274 bits (700), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 136/223 (60%), Positives = 166/223 (74%), Gaps = 27/223 (12%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MEC 33
MGNK+++LAGD L+SRA ALA+LK+TEV+ M+
Sbjct: 200 MGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDY 259
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
YMQKTY KTA+L+SNSCKAVA L+GQ EVA LAFEYG+NLGLA+QLIDDILDFTGTSAS
Sbjct: 260 YMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSAS 319
Query: 94 LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
LGK SL+D+R+G+ITAPILFAMEEFPQLR ++ +P NVD+ LEYLGKS GIQR E
Sbjct: 320 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARE 379
Query: 154 LALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
LA++HA+LAAAAI SLPET + D +R AL+ +T ++ITRNK
Sbjct: 380 LAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 422
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa
subsp. japonica GN=SPS1 PE=1 SV=1
Length = 430
Score = 251 bits (641), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/223 (55%), Positives = 163/223 (73%), Gaps = 27/223 (12%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MEC 33
MGNKL++LAGD L+SRA VALA+L +TEV+ M+
Sbjct: 208 MGNKLSVLAGDFLLSRACVALAALGNTEVVSLMATAVEHLVTGETMQISTSREQRRSMDY 267
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
Y+QKTY KTA+L+SNSCKAVA L+G +V+ LA+EYG+NLGLA+QLIDD+LDFTGTSAS
Sbjct: 268 YLQKTYYKTASLISNSCKAVAILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSAS 327
Query: 94 LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
LGK SLTD+R+GIITAP+L+AMEEFPQL ++ DNPANV++ L+YL KS GI++T E
Sbjct: 328 LGKGSLTDIRHGIITAPMLYAMEEFPQLHEVVDRGFDNPANVELALDYLQKSRGIEKTKE 387
Query: 154 LALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
LA +HA+ A AI++LP++ D D +R AL+ IT+++ITR K
Sbjct: 388 LAREHANRAIKAIEALPDSDDEDVLTSRRALIDITERVITRTK 430
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1
PE=3 SV=1
Length = 452
Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 129/229 (56%), Gaps = 39/229 (17%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI------------------------------ 30
GNK+AILAGD L+ RA VA+A L++ EVI
Sbjct: 230 FGNKMAILAGDFLLGRASVAIARLRNAEVIELLSTTIANLVEGEFMQLKNTIVDNSEIAN 289
Query: 31 ---MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDF 87
E Y+ KTY KTA+L+S SC+A A LSG R + ++++GKNLGL +Q++DD+LD+
Sbjct: 290 KATFEYYIHKTYLKTASLMSKSCRAAAVLSGARNPIVDASYKFGKNLGLCFQVVDDMLDY 349
Query: 88 TGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHG 147
+ + LGK + DL+ G+ TAP+LFA E++P+L I D P +V+ + ++ G
Sbjct: 350 SEGESHLGKPAGADLKLGLATAPVLFAWEKYPELGDMIKRKFDGPGDVERARFLVQQADG 409
Query: 148 IQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
+ RT ELA K+ A A +D LP + +R AL ++T K++ R+K
Sbjct: 410 LSRTRELAQKYCDEAVANLDLLPYSE------SREALRNLTMKMMNRSK 452
>sp|Q33DR2|DPS1_MOUSE Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1
PE=1 SV=1
Length = 409
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 35/224 (15%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MEC 33
G K A+LAGDL++S A VALA + +T V+
Sbjct: 193 WGEKKAVLAGDLILSAASVALARIGNTAVVSMLAQVIEDLVRGEFLQLGSKENENERFAH 252
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
Y++KT+ KTA+L++NSCKAV+ L V +A++YGKN+G+A+QLIDD+LDFT S
Sbjct: 253 YLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQ 312
Query: 94 LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
+GK + DL+ GI T P+LFA ++FP++ A I P +VD +Y+ +S G+Q+TT
Sbjct: 313 MGKPTSADLKLGIATGPVLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTY 372
Query: 154 LALKHASLAAAAIDSL-PETHDVDATNARTALVHITQKIITRNK 196
LA ++ A I L P T R AL+ +++ ++TR+K
Sbjct: 373 LAQQYCHKAVREIRKLRPSTE-------RDALIQLSESVLTRDK 409
>sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1
PE=1 SV=1
Length = 415
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 128/223 (57%), Gaps = 33/223 (14%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MEC 33
G K A+LAGDL++S A +ALA + +T VI
Sbjct: 199 WGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVRGEFLQLGSKENENERFAH 258
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
Y++KT+ KTA+L++NSCKAV+ L V +A++YGKN+G+A+QLIDD+LDFT S
Sbjct: 259 YLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQ 318
Query: 94 LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
+GK + DL+ G+ T P+LFA ++FP++ A I P +VD +Y+ +S G+Q+TT
Sbjct: 319 MGKPTSADLKLGLATGPVLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTY 378
Query: 154 LALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
LA ++ A I L + + R AL+ +++ ++TR+K
Sbjct: 379 LAQQYCHEAIREISKLRPSPE------RDALIQLSEIVLTRDK 415
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 127/220 (57%), Gaps = 33/220 (15%)
Query: 3 NKLAILAGDLLISRALVALASLKHTEVIMEC--------------------------YMQ 36
NKLAIL GD L++RA V L+++++ +V EC Y+Q
Sbjct: 244 NKLAILCGDYLLARASVVLSTIRNPDV-TECMSTALAELVEGEFMQAKSNGVVSFDNYLQ 302
Query: 37 KTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGK 96
KTY KT +L++NSC++ A LSG + ++ E+GKNLGLA+Q++DD+LD+TG++ GK
Sbjct: 303 KTYLKTGSLITNSCRSAAILSGADSNIINISTEFGKNLGLAFQIVDDLLDYTGSAEECGK 362
Query: 97 ASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELAL 156
A+ DL G+ TAP+L+A +EFPQL I +V+ + S GI++T LA+
Sbjct: 363 ATSVDLTLGLATAPVLYATQEFPQLEKLIKRKFSEIGDVEEAKRLVALSKGIEKTRNLAI 422
Query: 157 KHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
++ + A ++ LP++ +R L+ ++ ++TR K
Sbjct: 423 EYCNRAIQSLLKLPQSE------SRDLLITLSHIVVTRTK 456
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1
Length = 449
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 119/230 (51%), Gaps = 40/230 (17%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI------------------------------ 30
GNK+A+LAGD L+ RA VALA L+H EV+
Sbjct: 226 FGNKMAVLAGDFLLGRASVALARLRHAEVVELLATVIANLVEGEFMQLKNTARDEKNPKW 285
Query: 31 ----MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILD 86
+ Y+QKTY KTA+L+S SC+A A L G A+ YGKNLGLA+QL+DD+LD
Sbjct: 286 SEETLTYYLQKTYLKTASLISKSCRASALLGGADAATVDAAYLYGKNLGLAFQLVDDMLD 345
Query: 87 FTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSH 146
+T + LGK + DL G+ TAP+LFA + P+L + + + E + +S+
Sbjct: 346 YTRSEKELGKPAGADLELGLATAPLLFAWKTMPELGPLVGRKFEKEGDAARARELVLQSN 405
Query: 147 GIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
GI++T LA +A A AI P++ A+ L+ + K + RNK
Sbjct: 406 GIEQTRALAQDYAEKAIEAISGFPDSE------AKDGLIEMAVKTLKRNK 449
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 112/199 (56%), Gaps = 27/199 (13%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------MEC------ 33
G ++A+LAGD + ++A LA+L++ EVI +C
Sbjct: 201 FGTRVAVLAGDFMFAQASWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDVKLDD 260
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
YM K+Y KTA+LV+ S K A S +VA +++GKNLGL++Q++DDILDFT ++
Sbjct: 261 YMLKSYYKTASLVAASTKGAAIFSKVESKVAEQMYQFGKNLGLSFQVVDDILDFTQSTEQ 320
Query: 94 LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
LGK + DL G ITAP++FA+E P+LR I S P +++ +E + GI++ E
Sbjct: 321 LGKPAANDLAKGNITAPVIFALENEPRLREIIESEFCEPGSLEEAIEIVRNRGGIKKAQE 380
Query: 154 LALKHASLAAAAIDSLPET 172
LA + A LA ++ LP +
Sbjct: 381 LAKEKAELALKNLNCLPRS 399
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=preA PE=3 SV=2
Length = 323
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 107/187 (57%), Gaps = 27/187 (14%)
Query: 3 NKLAILAGDLLISRALVALASLKHTEVI---------------------------MECYM 35
N++A+LAGD L +++ LA+L + EV+ +E Y+
Sbjct: 109 NRVAVLAGDFLFAQSSWYLANLDNLEVVKLLSEVIRDFAEGEILQSINRFDTDTDLETYL 168
Query: 36 QKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 95
+K+Y KTA+L++NS KA LS +V +EYGK+LGLA+Q++DDILDFT + LG
Sbjct: 169 EKSYFKTASLIANSAKAAGVLSDAPRDVCDHLYEYGKHLGLAFQIVDDILDFTSPTEVLG 228
Query: 96 KASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELA 155
K + +DL +G ITAP LFAME++P L I +++ LE + + GI+R+ ELA
Sbjct: 229 KPAGSDLISGNITAPALFAMEKYPLLGKLIEREFAQAGDLEQALELVEQGDGIRRSRELA 288
Query: 156 LKHASLA 162
A LA
Sbjct: 289 ANQAQLA 295
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 114/199 (57%), Gaps = 27/199 (13%)
Query: 2 GNKLAILAGDLLISRALVALASLKHTEVI---------------------MEC------Y 34
G ++A+LAGD + +++ LA+L++ EVI +C Y
Sbjct: 157 GTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDY 216
Query: 35 MQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASL 94
+ K+Y KTA+L++ S ++ A SG + +EYG+NLGL++Q++DDILDFT ++ L
Sbjct: 217 LLKSYYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQL 276
Query: 95 GKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTEL 154
GK + +DL G +TAP++FA+++ PQLR I+S ++ +E + +S GI+R EL
Sbjct: 277 GKPAGSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNSLATAIELVHRSGGIKRAHEL 336
Query: 155 ALKHASLAAAAIDSLPETH 173
A + +A ++ LP +
Sbjct: 337 AREKGEIAIQSLQCLPRSE 355
>sp|P18900|COQ1_YEAST Hexaprenyl pyrophosphate synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ1 PE=1
SV=1
Length = 473
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 106/177 (59%), Gaps = 10/177 (5%)
Query: 24 LKHTEVI---MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQL 80
L H ++I E Y+ KTY KTAAL+S SC+ A LSG V +++G+NLG+ +QL
Sbjct: 303 LSHDQIIETAFEYYIHKTYLKTAALISKSCRCAAILSGASPAVIDECYDFGRNLGICFQL 362
Query: 81 IDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILE 140
+DD+LDFT + LGK S DL+ GI TAP+LFA +E P L I+ + +V+ ++
Sbjct: 363 VDDMLDFTVSGKDLGKPSGADLKLGIATAPVLFAWKEDPSLGPLISRNFSERGDVEKTID 422
Query: 141 YLGKSHGIQRTTELALKHASLAAAAI-DSLPETHDVDATNARTALVHITQKIITRNK 196
+ +GI +T LA ++ A + DSLPE ++AR+AL +T I+TR K
Sbjct: 423 SVRLHNGIAKTKILAEEYRDKALQNLRDSLPE------SDARSALEFLTNSILTRRK 473
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 3 NKLAILAGDLLISRALVALASLKHTEVI 30
NK+A+LAGD L+ RA V+++ L + EV+
Sbjct: 214 NKMAVLAGDFLLGRATVSISRLHNPEVV 241
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 115/199 (57%), Gaps = 27/199 (13%)
Query: 2 GNKLAILAGDLLISRALVALASLKHTEVI---------------------MEC------Y 34
G ++A+LAGD + +++ LA+L++ EVI +C Y
Sbjct: 188 GTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDY 247
Query: 35 MQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASL 94
+ K+Y KTA+L+++S ++ A SG + +EYG+NLGL++Q++DDILDFT ++ L
Sbjct: 248 LLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQL 307
Query: 95 GKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTEL 154
GK + +DL G +TAP++FA+++ P+LR I+S ++ ++ + +S GI+R EL
Sbjct: 308 GKPAGSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQEL 367
Query: 155 ALKHASLAAAAIDSLPETH 173
A + LA + LP++
Sbjct: 368 AKEKGDLALQNLQCLPKSQ 386
>sp|O43091|DPS1_SCHPO Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1
Length = 378
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 39/229 (17%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI------------------------------ 30
GN+ +ILAG+ +++RA A+A L++ +V
Sbjct: 156 FGNRRSILAGNFILARASTAMARLRNPQVTELLATVIADLVRGEFLQLKNTMDPSSLEIK 215
Query: 31 ---MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDF 87
+ Y++K++ KTA+L+S SCKA L VAT A EYG+ +G A+QL+DD+LD+
Sbjct: 216 QSNFDYYIEKSFLKTASLISKSCKASTILGQCSPTVATAAGEYGRCIGTAFQLMDDVLDY 275
Query: 88 TGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHG 147
T +LGKA+ DL+ G+ TAP+LFA +++P+L A I + ++P+++ + +
Sbjct: 276 TSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNRFNHPSDIQRARSLVECTDA 335
Query: 148 IQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
I++T A ++ A ++ LP+ + AR AL + K+ITR K
Sbjct: 336 IEQTITWAKEYIKKAKDSLLCLPD------SPARKALFALADKVITRKK 378
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 110/199 (55%), Gaps = 27/199 (13%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------MEC------ 33
G ++A+LAGD + ++A LA+L++ EVI +C
Sbjct: 190 FGTRVAVLAGDFMFAQASWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDTKLDE 249
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
Y+ K++ KTA+LV+ S K A S +V +E+GKNLGL++Q++DDILDFT ++
Sbjct: 250 YLLKSFYKTASLVAASTKGAAIFSRVEPDVTEQMYEFGKNLGLSFQIVDDILDFTQSTEQ 309
Query: 94 LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
LGK + +DL G +TAP++FA+E P+LR I S +++ +E + K GI+R E
Sbjct: 310 LGKPAGSDLAKGNLTAPVIFALEREPRLREIIESEFCEAGSLEEAIEAVTKGGGIKRAQE 369
Query: 154 LALKHASLAAAAIDSLPET 172
LA + A A + LP +
Sbjct: 370 LAREKADDAIKNLQCLPRS 388
>sp|Q9TLS1|PREA_CYACA Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1
Length = 323
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 33/223 (14%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVIMEC--------------------------- 33
GNK+A+ AGD L +++ LA++ + EV+
Sbjct: 107 FGNKIAVFAGDFLFAQSSWYLANINNLEVVKAISKVITDLAEGELQQNLTQFNTYYSIIK 166
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
Y++K++NKTA+L++ SCK+ LS + + + + YGKNLGLA+Q+IDDILD T +S +
Sbjct: 167 YLEKSFNKTASLIAASCKSCCLLSDFDQSLNSKFYNYGKNLGLAFQIIDDILDITSSSTA 226
Query: 94 LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
LGK + +DL+ G +TAP+LFA+ + +L I +++ + + +++ I+ + +
Sbjct: 227 LGKMTTSDLKLGNLTAPVLFALTKNSKLFKIIEREFCEKSDISEAINIIKETNAIEESFD 286
Query: 154 LALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
LA +H A +I LP + + D +L+ I ++ R K
Sbjct: 287 LAYEHIEAAINSIKDLPTSSEKD------SLIEIAYDLLNRYK 323
>sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1
Length = 323
Score = 116 bits (291), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 33/221 (14%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MEC 33
G K+AILAGD L +++ LA+L+ EV+ +E
Sbjct: 107 FGTKIAILAGDFLFAQSSWYLANLESLEVVKLISKVITDFAEGEIRRGLNQFKVDLTLEE 166
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
Y++K++ KTA+L++ S KA A LS VA + YG++LGLA+Q++DDILDFT ++
Sbjct: 167 YLEKSFYKTASLLAASSKAAALLSHVDLTVANDLYNYGRHLGLAFQIVDDILDFTSSTEE 226
Query: 94 LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
LGK S +DL+ G +TAP+LFA+E+ +L I P + + L+ + ++ I++T E
Sbjct: 227 LGKPSCSDLKKGNLTAPVLFALEQNSELIPLIQRQFSEPKDFEYTLQIVEETKAIEKTRE 286
Query: 154 LALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 194
LA++HA +A +++LP ++++ AL IT+ ++ R
Sbjct: 287 LAMEHAQVAIQCLENLP------PSSSKEALKLITKYVLER 321
>sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1
Length = 323
Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 119/218 (54%), Gaps = 33/218 (15%)
Query: 4 KLAILAGDLLISRALVALASLKHTEVI---------------------------MECYMQ 36
K+A+LAGD L +++ LA++++ V+ ++ Y++
Sbjct: 110 KIAVLAGDFLFAQSSWYLANIENLAVVKAISKVITDFAEGEIRQGLVHFDPSISIDAYIE 169
Query: 37 KTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGK 96
K++ KTA+L++ SC+ A L+G ++ + YGK++GLA+Q++DD+LD TG++ SLGK
Sbjct: 170 KSFYKTASLIAASCRGAAMLNGSNHQINNDLYLYGKHMGLAFQIMDDVLDITGSTKSLGK 229
Query: 97 ASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELAL 156
+ DL NG +T+P+LF++ + L I+ N ++ L + +S GI + +LA
Sbjct: 230 PAGADLINGNLTSPLLFSLTQEASLNDLIDREFCNSTDIASTLFLIKRSGGITKAKDLAK 289
Query: 157 KHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 194
+ A + + LP++ V ++L +T IITR
Sbjct: 290 EQVQAALSCLQFLPQSTPV------SSLKELTHFIITR 321
>sp|P51268|PREA_PORPU Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1
Length = 323
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 33/218 (15%)
Query: 4 KLAILAGDLLISRALVALASLKHTEVI---------------------------MECYMQ 36
K+A+LAGD L +++ LA++ + EV+ ++ Y++
Sbjct: 110 KIAVLAGDFLFAQSSWYLANIGNLEVVKVITKVITDFAEGEIRQGLVHFDPSISIDDYIE 169
Query: 37 KTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGK 96
K++ KTA+LV+ SC+ A L+ ++ + YGK++GLA+Q++DD+LD G++ SLGK
Sbjct: 170 KSFYKTASLVAASCRGAAMLNDLNSQMHNDLYLYGKHMGLAFQIMDDVLDIAGSTKSLGK 229
Query: 97 ASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELAL 156
S D NG +TAPILFA+ + +L I + ++ + L + KS GI + +LA
Sbjct: 230 PSGADFMNGNLTAPILFALTQEGKLDQLIQREFSDERDISLALFLIKKSGGITKAKDLAK 289
Query: 157 KHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 194
+ A + LP++ V ++L +T IITR
Sbjct: 290 EQVQAALCCLQFLPKSAPV------SSLKELTHFIITR 321
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 99/197 (50%), Gaps = 30/197 (15%)
Query: 3 NKLAILAGDLLISRALVALASLKHTE--------VIMEC-------------------YM 35
N+ A+ GD L +R+L +A L + ++ C Y+
Sbjct: 105 NRFAMYTGDYLFARSLERMAELGNPRAHQVLAKTIVEVCRGEIEQIKDKYRFDQPLRTYL 164
Query: 36 QKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 95
++ KTA L++ SC+ A +G E + + +G +G+++Q+ DDILDFTGT LG
Sbjct: 165 RRIRRKTALLIAASCQLGALAAGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQLG 224
Query: 96 KASLTDLRNGIITAPILFAMEEFPQLRAFINS--SSDNPANVDVILEYLGKSHGIQRTTE 153
K + +DL G +T P+L+A+ + +++A I + + A + ++ + ++ I+R+
Sbjct: 225 KPAGSDLLQGNVTLPVLYALSD-ERVKAAIAAVGPETDVAEMAAVISAIKRTDAIERSYA 283
Query: 154 LALKHASLAAAAIDSLP 170
L+ ++ A +D LP
Sbjct: 284 LSDRYLDKALHLLDGLP 300
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 11/167 (6%)
Query: 31 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGT 90
+ Y+++ KTA L++ SC+ A SG E++ + +G +G++YQ+IDDILDFT T
Sbjct: 188 LRTYLRRIKRKTALLIAVSCQLGAIASGADEKIHKALYWFGYYVGMSYQIIDDILDFTST 247
Query: 91 SASLGKASLTDLRNGIITAPILFAMEEFPQLR---AFINSSSDNPANVDVILEYLGKSHG 147
LGK DL G +T P+L+A++ P L+ INS + ++ I+E + K+
Sbjct: 248 EEELGKPVGGDLLQGNVTLPVLYALKN-PALKNQLKLINSET-TQEQLEPIIEEIKKTDA 305
Query: 148 IQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 194
I+ + ++ + A +++LP AR++L I + I R
Sbjct: 306 IEASMAVSEMYLQKAFQKLNTLPRGR------ARSSLAAIAKYIGKR 346
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 39/228 (17%)
Query: 1 MGNKLAILAGDLLISRA---LVALASLKHTEVIMEC------------------------ 33
GN ++L GD + +RA + +L SLK EV+ E
Sbjct: 103 FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEEN 162
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
YM+ Y+KTA L + + L+G E +YG+ LG A+QLIDD+LD+
Sbjct: 163 YMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQ 222
Query: 94 LGKASLTDLRNGIITAPILFAM-----EEFPQLRAFINSSSDNPANVDVILEYLGKSHGI 148
LGK DL G T P+L AM E+ +R I + ++ +LE + +
Sbjct: 223 LGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHL-LEPVLEAMNACGSL 281
Query: 149 QRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
+ T + A + A A AA+ LP+ T R AL+ + + R++
Sbjct: 282 EWTRQRAEEEADKAIAALQVLPD------TPWREALIGLAHIAVQRDR 323
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 39/228 (17%)
Query: 1 MGNKLAILAGDLLISRA---LVALASLKHTEVIMEC------------------------ 33
GN ++L GD + +RA + +L SLK EV+ E
Sbjct: 103 FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEEN 162
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
YM+ Y+KTA L + + L+G E +YG+ LG A+QLIDD+LD+
Sbjct: 163 YMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQ 222
Query: 94 LGKASLTDLRNGIITAPILFAM-----EEFPQLRAFINSSSDNPANVDVILEYLGKSHGI 148
LGK DL G T P+L AM E+ +R I + ++ +LE + +
Sbjct: 223 LGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHL-LEPVLEAMNACGSL 281
Query: 149 QRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
+ T + A + A A AA+ LP+ T R AL+ + + R++
Sbjct: 282 EWTRQRAEEEADKAIAALQVLPD------TPWREALIGLAHIAVQRDR 323
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 51/228 (22%)
Query: 6 AILAGDLLISRALVALASLKHTEV-------IME-C-------------------YMQKT 38
AI G L++RAL +A++ +++ I+E C Y+++
Sbjct: 108 AIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRI 167
Query: 39 YNKTAALVSNSCKAVAYLSGQREEVATLAF-EYGKNLGLAYQLIDDILDFTGTSASLGKA 97
KTA L+ SC A LS Q +E +T ++G +G++YQ+IDDILD+T A+LGK
Sbjct: 168 NRKTAILIEASCHLGA-LSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKP 226
Query: 98 SLTDLRNGIITAPILFAM-----EEFPQLRAFIN---SSSDNPANVDVILEYL---GKSH 146
+D+RNG IT P++ A+ ++ +L A + S+SD D + +Y+ K +
Sbjct: 227 VGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSD-----DEVYQYIVSQVKQY 281
Query: 147 GIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 194
GI+ L+ K+ A + L + +N + L I +K++ R
Sbjct: 282 GIEPAELLSRKYGDKAKYHLSQLQD------SNIKDYLEEIHEKMLKR 323
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 39/227 (17%)
Query: 1 MGNKLAILAGDLLISRALVALASLKH----------TEVIMEC----------------- 33
GN ++L GD + +RA +A L+ T V+ E
Sbjct: 109 FGNAASVLVGDFIYTRAFQLVAQLESLKILSIMADATNVLAEGEVQQLMNVNDPETSEAN 168
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
YM+ Y+KTA L + +A A ++G E +YG+ LG A+QL+DD+LD++ + +
Sbjct: 169 YMRVIYSKTARLFEVAGQAAAIVAGGTEAQEKALQDYGRYLGTAFQLVDDVLDYSANTQA 228
Query: 94 LGKASLTDLRNGIITAPILFAM-----EEFPQLRAFINSSSDNPANVDVILEYLGKSHGI 148
LGK DL G T P+L AM ++ +R I A +D +L + + +
Sbjct: 229 LGKNVGDDLAEGKPTLPLLHAMRHGNAQQAALIREAIEQGGKREA-IDEVLAIMTEHKSL 287
Query: 149 QRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 195
A + A A AI+ LPE+ + AL+ + + RN
Sbjct: 288 DYAMNRAKEEAQKAVDAIEILPESE------YKQALISLAYLSVDRN 328
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 44/235 (18%)
Query: 1 MGNKLAILAGDLLISRALVAL-ASLK---------------------------------H 26
G +AILAGD L ++A AL +LK
Sbjct: 103 WGEPMAILAGDYLHAKAFEALNEALKGLDGNTFYKAFSIFITSIEIISEGQAMDMSFENR 162
Query: 27 TEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILD 86
+V E Y+Q KTA L S S ++ ++V EYG NLG+++Q++DDIL
Sbjct: 163 LDVTEEEYIQMIKGKTAMLFSCSAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDILG 222
Query: 87 FTGTSASLGKASLTDLRNGIITAPILFAMEEFPQ-----LRAFINSSSDNPANVDVILEY 141
G LGK +D+R G T ++ + E + L + + + +++ E
Sbjct: 223 IIGDEKELGKPIYSDIREGKKTILVIKTLSEATEDEKKILVSTLGNKEAKKEDLERASEI 282
Query: 142 LGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
+ K H +Q +LA K++ LA + +P V A AL ++ Q I R K
Sbjct: 283 IRK-HSLQYAYDLAKKYSDLAIENLREIP----VSNKTAEKALKYLAQFTIQRRK 332
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 32/156 (20%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEV-IMEC-------------------------- 33
G AILAGD L S+A L+ +++ V +++C
Sbjct: 104 WGEAGAILAGDTLYSKAFEILSKVENEPVRVLKCMDVLSKTCTEICEGQWLDMDFETRKK 163
Query: 34 -----YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFT 88
Y++ KT+ L + + K A L G +EVA EYG+ +G+ +Q+ DD+LD T
Sbjct: 164 VTESEYLEMVEKKTSVLYAAAAKIGALLGGASDEVAEALSEYGRLIGIGFQMYDDVLDMT 223
Query: 89 GTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAF 124
LGK +DL G T ++ A E+ +L F
Sbjct: 224 APEEVLGKVRGSDLMEGKYTLIVINAFEKGVKLDIF 259
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 37/222 (16%)
Query: 3 NKLAILAGDLLISRALVALASLKHT----------------EVIM-----------ECYM 35
N+ A+L GD LI+RA L L + EV+ + Y+
Sbjct: 109 NQTAVLVGDFLIARAFDLLVDLDNMILLKDFSTGTCEIAEGEVLQLQAQHQPDTTEDIYL 168
Query: 36 QKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 95
Q + KT+ L + + A L+G+ E L + + G A+Q+IDDILD+T + +LG
Sbjct: 169 QIIHGKTSRLFELATEGAAILAGKPEYREPLR-RFAGHFGNAFQIIDDILDYTSDADTLG 227
Query: 96 KASLTDLRNGIITAPILFAMEEFP-QLRAFINSS--SDNPANVDVILEYLGKSHGIQRTT 152
K DL G T P++ AM+ + R I S + + ++ ++ + S +
Sbjct: 228 KNIGDDLMEGKPTLPLIAAMQNTQGEQRDLIRRSIATGGTSQLEQVIAIVQNSGALDYCH 287
Query: 153 ELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 194
+ A + A A++ LPE + R ALV++T+ + R
Sbjct: 288 KRATEETERALQALEILPE------STYRQALVNLTRLALDR 323
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 30/145 (20%)
Query: 2 GNKLAILAGDLLISRALVALASLKHT----EVI--------------------------M 31
G +AILAGDLL ++A A++ +K EV+ M
Sbjct: 107 GEPMAILAGDLLYAKAFEAVSRIKDNKKAHEVLKILSKACVEVCEGQAMDMEFENYYPTM 166
Query: 32 ECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTS 91
E Y+ KT AL+ S A ++ EE EY K +GL +Q+ DD+LD G
Sbjct: 167 EEYLDMIRKKTGALLEASVGIGAVMADCNEEEREALKEYAKRIGLTFQIQDDVLDLIGDQ 226
Query: 92 ASLGKASLTDLRNGIITAPILFAME 116
LGK +D+R G T ++ A++
Sbjct: 227 KKLGKPVGSDIREGKKTIIVIHALK 251
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 40/228 (17%)
Query: 2 GNKLAILAGDLLISRALVALASLKHTE--------VIMEC-------------------- 33
G +AILAGD+L S+A A+ +E V+ C
Sbjct: 103 GEPMAILAGDVLFSKAFEAVIRNGDSERVKDALAVVVDSCVKICEGQALDMGFEERLDVT 162
Query: 34 ---YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGT 90
YM+ Y KTAAL++ + KA A + G E +YGK +GLA+Q+ DD LD
Sbjct: 163 EDEYMEMIYKKTAALIAAATKAGAIMGGASEREVEALEDYGKFIGLAFQIHDDYLDVVSD 222
Query: 91 SASLGKASLTDLRNGIITAPILFAMEEFPQ---LRAFINSSSDNPANVDVILEYLGKSHG 147
SLGK +D+ G +T ++ A+EE + R S + +V +E +
Sbjct: 223 EESLGKPVGSDIAEGKMTLMVVKALEEASEEDRERLISILGSGDEGSVAEAIEIFERYGA 282
Query: 148 IQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 195
Q E+AL + +A ++ L + ++AR AL+ I ++ R
Sbjct: 283 TQYAHEVALDYVRMAKERLEILED------SDARDALMRIADFVLERE 324
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%)
Query: 13 LISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGK 72
L+ ++ L+S ++ +E +KT AL+ + + A L+G +E+ Y +
Sbjct: 158 LVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQ 217
Query: 73 NLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE 117
N+GLA+Q+IDD+LD T LGK+ DL+ T P + +EE
Sbjct: 218 NIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEE 262
>sp|Q5U2R1|DLP1_RAT Decaprenyl-diphosphate synthase subunit 2 OS=Rattus norvegicus
GN=Pdss2 PE=2 SV=1
Length = 401
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 47/222 (21%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI------------------------------ 30
GNK+A+L+GD L++ A LA L++T+V+
Sbjct: 184 FGNKIAVLSGDFLLANACNGLALLQNTKVVELLASALMDLVQGIYQENSASTQGNPIPDD 243
Query: 31 --MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFT 88
+ + ++T+ AL++ SCKA L+ V +AF+YGK++ +++++ D+ F
Sbjct: 244 IRISTWKEQTFLSHCALLAKSCKAAMELAKHDAAVQDMAFQYGKHMAMSHKINSDLQPFI 303
Query: 89 GTSASLGKASLTDLRNGIITAPILFAMEEFPQ---LRAFINSSSDNPANVDVILEYLGKS 145
AS K + +AP++ E + ++ + N + E +
Sbjct: 304 KDKASDSKTF------NLNSAPVVLHQEFLGRDLWIKQIGEAQEKGRLNYTKLRETIKAG 357
Query: 146 HGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHI 187
G+ +L H + A A++S P + AR+AL +I
Sbjct: 358 KGVTSAIDLCRYHGNKALEALESFP------PSEARSALENI 393
>sp|Q86YH6|DLP1_HUMAN Decaprenyl-diphosphate synthase subunit 2 OS=Homo sapiens GN=PDSS2
PE=1 SV=2
Length = 399
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 48/222 (21%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI------------------------------ 30
GNK+AIL+GD L++ A LA L++T+V+
Sbjct: 183 FGNKIAILSGDFLLANACNGLALLQNTKVVELLASALMDLVQGVYHENSTSKESYITDDI 242
Query: 31 -MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTG 89
+ + ++T+ AL++ SC+A L+ EV +AF+YGK++ +++++ D+ F
Sbjct: 243 GISTWKEQTFLSHGALLAKSCQAAMELAKHDAEVQNMAFQYGKHMAMSHKINSDVQPFIK 302
Query: 90 TSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINS--SSDNPANVDV--ILEYLGKS 145
S S+T N +AP++ +EF +I + +D + E +
Sbjct: 303 EKTS---DSMTFNLN---SAPVVL-HQEFLGRDLWIKQIGEAQEKGRLDYAKLRERIKAG 355
Query: 146 HGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHI 187
G+ +L H + A A++S P + AR+AL +I
Sbjct: 356 KGVTSAIDLCRYHGNKALEALESFP------PSEARSALENI 391
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 11/172 (6%)
Query: 26 HTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDIL 85
++V E Y++ KTA L + + A L G +E YG ++G A+Q+ DD+L
Sbjct: 178 RSDVTTEEYLEMVEFKTAVLYAAAASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLL 237
Query: 86 DFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNP--ANVDVILEYLG 143
D T S LGK +DL T L A ++ + + SD+P A ++ ++ L
Sbjct: 238 DLTAPSDELGKQRGSDLVENKRTVITLHARDQGIDVEGLV---SDDPSDAEIEAAVQTLE 294
Query: 144 KSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 195
+ I E+AL + +D LPE AR L I ++ R+
Sbjct: 295 DAGSIDFAREMALDLVTSGKERLDVLPENE------ARQLLEDIADFLVERS 340
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 27 TEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILD 86
T+V ++ ++ KTAAL++ S + A L+G V YG+++GLA+QL+DD+L
Sbjct: 187 TDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDDLLG 246
Query: 87 FTGTSASLGKASLTDLRNGIITAPILF 113
G GK +DLR+ T P+ +
Sbjct: 247 IWGRPEITGKPVYSDLRSRKKTLPVTW 273
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 27 TEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILD 86
T+V ++ ++ KTAAL++ S + A L+G V YG+++GLA+QL+DD+L
Sbjct: 187 TDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDDLLG 246
Query: 87 FTGTSASLGKASLTDLRNGIITAPILF 113
G GK +DLR+ T P+ +
Sbjct: 247 IWGRPEITGKPVYSDLRSRKKTLPVTW 273
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 52/238 (21%)
Query: 2 GNKLAILAGDLLISRALV----ALASLKHTEVI--------------------MEC---- 33
G LAILAGDLL ++A AL L +I ME
Sbjct: 102 GLPLAILAGDLLHAKAFQLLTQALRGLPSETIIKAFDIFTRSIIIISEGQAVDMEFEDRI 161
Query: 34 ------YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDF 87
Y+ KTAAL S S A ++G + L ++G NLG+A+Q++DDIL
Sbjct: 162 DIKEQEYLDMISRKTAALFSASSSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDILGL 221
Query: 88 TGTSASLGKASLTDLRNGIITAPILFAMEEFPQ------LRAFINSSSDNP---ANVDVI 138
T LGK +D+R G T ++ +E + L+A N S+ ++ D+I
Sbjct: 222 TADEKELGKPVFSDIREGKKTILVIKTLELCKEDEKKIVLKALGNKSASKEELMSSADII 281
Query: 139 LEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
K + + LA K+ A +++ + D+ AL ++ + I R K
Sbjct: 282 -----KKYSLDYAYNLAEKYYKNAIDSLNQVSSKSDIPG----KALKYLAEFTIRRRK 330
>sp|Q33DR3|DLP1_MOUSE Decaprenyl-diphosphate synthase subunit 2 OS=Mus musculus GN=Pdss2
PE=1 SV=2
Length = 401
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 47/222 (21%)
Query: 1 MGNKLAILAGDLLISRALVALASLKHTEVI------------------------------ 30
GNK+AIL+GD L++ A LA L++T+V+
Sbjct: 184 FGNKIAILSGDFLLANACNGLALLQNTKVVELLSSALMDLVHGVYQENSASTKENSIPDD 243
Query: 31 --MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFT 88
+ + ++T+ AL++ SC+A L+ V +AF+YGK++ +++++ D+ F
Sbjct: 244 IGISTWKEQTFLSHCALLAKSCQAAMELAKHDAAVQDMAFQYGKHMAMSHKINADLQPFI 303
Query: 89 GTSASLGKASLTDLRNGIITAPILFAMEEFPQ---LRAFINSSSDNPANVDVILEYLGKS 145
AS K + +AP++ E + ++ + N + E +
Sbjct: 304 KDKASDSKTF------NLNSAPVVLHQEFLGRDLWIKQIGEAQEKGSLNYSKLRETIKAG 357
Query: 146 HGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHI 187
G+ +L H + A A++S P + AR+AL +I
Sbjct: 358 KGVTSAIDLCRYHGNKALEALESFP------PSEARSALENI 393
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 42/229 (18%)
Query: 2 GNKLAILAGDLLISRALVALASLKHTEVIME------------C---------------- 33
G +AILAGD+L S+A A+ +E++ E C
Sbjct: 103 GEPMAILAGDVLFSKAFEAVIRNGDSEMVKEALAVVVDSCVKICEGQALDMGFEERLDVT 162
Query: 34 ---YMQKTYNKTAALVSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTG 89
YM+ Y KTAAL++ + KA A + G +E+A L +YG+ +GLA+Q+ DD LD
Sbjct: 163 EEEYMEMIYKKTAALIAAATKAGAIMGGGSPQEIAALE-DYGRCIGLAFQIHDDYLDVVS 221
Query: 90 TSASLGKASLTDLRNGIITAPILFAME---EFPQLRAFINSSSDNPANVDVILEYLGKSH 146
SLGK +D+ G +T ++ A+E E + R S + V +E +
Sbjct: 222 DEESLGKPVGSDIAEGKMTLMVVKALERASEKDRERLISILGSGDEKLVAEAIEIFERYG 281
Query: 147 GIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 195
+ +AL H +A ++ L E ++AR AL I ++ R
Sbjct: 282 ATEYAHAVALDHVRMAKERLEVLEE------SDAREALAMIADFVLERE 324
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%)
Query: 13 LISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGK 72
L++ +V + S +EV +E +KTA L+ + A L G +E +Y +
Sbjct: 227 LVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYAR 286
Query: 73 NLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE 117
++GL +Q++DDILD T +S LGK + DL +T P L +E+
Sbjct: 287 DIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEK 331
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASL 99
+KTAAL+ + A + G EE +Y + +GL +Q++DDILD T ++ LGK +
Sbjct: 245 HKTAALLEAAAVIGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAG 304
Query: 100 TDLRNGIITAPILFAME 116
D+ G +T P L +E
Sbjct: 305 KDVMAGKLTYPRLIGLE 321
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASL 99
+KTAAL+ + A + G +E Y + +GL +Q++DD+LD T +S LGK +
Sbjct: 228 HKTAALLEAAAVMGAIMGGGSDEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAG 287
Query: 100 TDLRNGIITAPILFAMEE 117
DL G +T P L +E+
Sbjct: 288 KDLIAGKLTYPRLMGVEK 305
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 19 VALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAY 78
+A L+H E I +KTAAL+ S A + G +E + ++ + +GL +
Sbjct: 227 IADVGLEHLEFI-------HIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLF 279
Query: 79 QLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE 117
Q++DDILD T +S LGK + DL +T P L +++
Sbjct: 280 QVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDK 318
>sp|P22939|ISPA_ECOLI Farnesyl diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispA PE=1 SV=1
Length = 299
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKAS 98
+KT AL+ + + A +G + A + Y +++GLA+Q+ DDILD G +A+LGK
Sbjct: 180 HKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQ 239
Query: 99 LTDLRNGIITAPILFAMEE 117
D + G T P L +E+
Sbjct: 240 GADQQLGKSTYPALLGLEQ 258
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 34 YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDF 87
Y + Y KTA+L + S AY G EE+A +G LG AYQ++DDIL+F
Sbjct: 167 YFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEF 220
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 40 NKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASL 99
+KTAAL+ S + G +E ++ + +GL +Q++DDILD T +S LGK +
Sbjct: 250 HKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAG 309
Query: 100 TDLRNGIITAPILFAMEEFPQLRAFINSSS 129
DL +T P L +E+ + +N+ +
Sbjct: 310 KDLIADKLTYPKLMGLEKSREFAEKLNTEA 339
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 40 NKTAALVSNSCKAVAYLSGQRE-EVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKAS 98
+KTAAL+ +S A L G EV L + + +GL +Q++DDILD T +S LGK +
Sbjct: 253 HKTAALLESSVVLGAILGGGTNVEVEKLR-RFARCIGLLFQVVDDILDVTKSSEELGKTA 311
Query: 99 LTDLRNGIITAPILFAMEEFPQLRAFINSSS 129
DL T P L +E+ + A +N +
Sbjct: 312 GKDLVVDKTTYPKLLGLEKAKEFAAELNREA 342
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 58 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAME 116
G EE+ L +Y + +GL +Q++DDILD T ++ LGK + D+ G +T P L +E
Sbjct: 263 GTEEEIEKLR-KYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLE 320
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 58 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAME 116
G EE+ L +Y + +GL +Q++DDILD T ++ LGK + D+ G +T P L +E
Sbjct: 260 GTEEEIEKLR-KYARCIGLLFQVVDDILDVTESTKELGKTAGKDVMAGKLTYPRLIGLE 317
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 24 LKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDD 83
L+H E I +KTA L+ + A + G +E ++ + +GL +Q++DD
Sbjct: 251 LEHLEFI-------HVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDD 303
Query: 84 ILDFTGTSASLGKASLTDLRNGIITAPILFAMEE 117
ILD T +S LGK + D G +T P L +E+
Sbjct: 304 ILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEK 337
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 24 LKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDD 83
L+H E I +KTAAL+ S A + G ++ ++ + +GL +Q++DD
Sbjct: 246 LEHLEFIH-------LHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDD 298
Query: 84 ILDFTGTSASLGKASLTDLRNGIITAPILFAMEE 117
ILD T +S LGK + DL +T P + +E+
Sbjct: 299 ILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEK 332
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,438,507
Number of Sequences: 539616
Number of extensions: 2382490
Number of successful extensions: 6937
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 6820
Number of HSP's gapped (non-prelim): 115
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)