Query 029266
Match_columns 196
No_of_seqs 110 out of 1186
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 16:30:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mzv_A Decaprenyl diphosphate 100.0 4E-45 1.4E-49 309.6 21.7 190 1-196 112-333 (341)
2 3oyr_A Trans-isoprenyl diphosp 100.0 2.1E-45 7.2E-50 311.5 20.0 189 1-195 124-344 (345)
3 3apz_A Geranyl diphosphate syn 100.0 2.3E-44 7.8E-49 306.2 21.7 196 1-196 126-348 (348)
4 3pko_A Geranylgeranyl pyrophos 100.0 1.1E-44 3.9E-49 306.2 19.6 190 1-196 115-334 (334)
5 3rmg_A Octaprenyl-diphosphate 100.0 1.9E-44 6.4E-49 304.8 20.9 189 1-196 106-326 (334)
6 3nf2_A Putative polyprenyl syn 100.0 1.6E-44 5.6E-49 306.9 18.9 190 1-196 113-344 (352)
7 3lmd_A Geranylgeranyl pyrophos 100.0 2.4E-44 8.2E-49 306.2 18.8 189 1-196 134-352 (360)
8 1wy0_A Geranylgeranyl pyrophos 100.0 1.5E-43 5E-48 300.6 17.1 190 1-196 105-342 (342)
9 3aqb_B Component B of hexapren 100.0 4.9E-43 1.7E-47 295.5 18.8 188 1-196 103-325 (325)
10 3tc1_A Octaprenyl pyrophosphat 100.0 1.2E-42 4.1E-47 291.5 18.7 180 1-192 96-307 (315)
11 3lk5_A Geranylgeranyl pyrophos 100.0 3.9E-42 1.3E-46 294.7 19.4 189 1-195 143-372 (380)
12 4dhd_A Polyprenyl synthetase; 100.0 1.9E-41 6.5E-46 288.8 20.7 187 1-196 104-336 (358)
13 1wmw_A Geranylgeranyl diphosph 100.0 6.6E-42 2.3E-46 289.1 16.8 187 1-196 98-330 (330)
14 2q80_A Geranylgeranyl pyrophos 100.0 8.2E-41 2.8E-45 279.0 17.2 183 1-196 84-297 (301)
15 2e8v_A Geranylgeranyl pyrophos 100.0 4.1E-41 1.4E-45 285.2 15.2 191 1-193 99-339 (340)
16 1v4e_A Octoprenyl-diphosphate 100.0 5.6E-40 1.9E-44 273.7 16.4 164 1-173 100-289 (299)
17 1yhl_A Farnesyl pyrophosphate 100.0 7.3E-40 2.5E-44 279.8 16.3 187 1-196 117-362 (362)
18 2qis_A Farnesyl pyrophosphate 100.0 4E-39 1.4E-43 275.9 17.3 189 1-196 143-374 (374)
19 1rtr_A Geranyltranstransferase 100.0 6.6E-39 2.2E-43 267.5 13.3 157 1-196 103-293 (301)
20 1uby_A FPS, farnesyl diphospha 100.0 2.8E-38 9.7E-43 270.1 17.0 189 1-196 136-367 (367)
21 4f62_A Geranyltranstransferase 100.0 6.2E-38 2.1E-42 262.6 16.1 155 1-196 106-295 (317)
22 3ts7_A Geranyltranstransferase 100.0 5.8E-38 2E-42 263.4 15.2 155 1-196 111-302 (324)
23 3p8r_A Geranyltranstransferase 100.0 5.9E-38 2E-42 261.6 14.4 155 1-196 111-302 (302)
24 3lsn_A Geranyltranstransferase 100.0 8.6E-38 3E-42 260.7 15.3 155 1-196 105-296 (304)
25 3uca_A Geranyltranstransferase 100.0 6.6E-38 2.3E-42 263.1 14.6 155 1-196 135-324 (324)
26 3dyh_A Farnesyl pyrophosphate 100.0 5.1E-38 1.8E-42 270.2 14.2 189 1-196 145-390 (390)
27 3p8l_A Geranyltranstransferase 100.0 5.5E-38 1.9E-42 261.6 13.0 155 1-194 112-302 (302)
28 2h8o_A Geranyltranstransferase 100.0 1.4E-37 4.8E-42 262.5 14.6 155 1-196 146-335 (335)
29 2her_A Fragment, farnesyl pyro 100.0 5.6E-38 1.9E-42 267.4 10.7 181 1-194 134-354 (368)
30 2ihi_A Pyrophosphate synthase; 100.0 3.2E-37 1.1E-41 265.4 15.2 188 1-195 144-395 (395)
31 1rqj_A Geranyltranstransferase 100.0 6.3E-38 2.2E-42 261.4 10.3 158 1-196 105-299 (299)
32 3mav_A Farnesyl pyrophosphate 100.0 1.7E-36 5.8E-41 261.5 16.4 155 31-194 232-394 (395)
33 3m0g_A Farnesyl diphosphate sy 100.0 4.5E-37 1.5E-41 255.7 12.1 152 1-196 102-289 (297)
34 3lom_A Geranyltranstransferase 100.0 1.2E-36 4.2E-41 254.5 12.6 153 1-195 111-302 (313)
35 3pde_A Farnesyl-diphosphate sy 100.0 1.1E-36 3.8E-41 254.2 11.9 157 1-196 111-300 (309)
36 2ftz_A Geranyltranstransferase 100.0 2.6E-36 8.9E-41 249.6 13.8 149 1-194 107-284 (284)
37 3ipi_A Geranyltranstransferase 100.0 6E-35 2.1E-39 242.6 15.0 157 1-195 101-283 (295)
38 3llw_A Geranyltranstransferase 100.0 2.1E-34 7.2E-39 240.9 15.4 155 1-195 115-304 (311)
39 3npk_A Geranyltranstransferase 100.0 2E-33 7E-38 232.9 14.4 151 1-193 101-284 (291)
40 2q58_A Fragment, farnesyl pyro 100.0 1.6E-33 5.6E-38 240.8 12.4 182 1-195 134-359 (368)
41 2j1p_A Geranylgeranyl pyrophos 100.0 2.4E-31 8.3E-36 221.0 14.9 142 1-196 113-293 (293)
42 2azj_A Geranylgeranyl pyrophos 100.0 4E-32 1.4E-36 225.1 9.9 150 1-195 108-280 (289)
43 4fp4_A Polyprenyl synthetase; 99.9 4.1E-25 1.4E-29 182.1 8.4 102 1-105 107-226 (285)
44 3kra_B Geranyl diphosphate syn 99.9 4.2E-22 1.4E-26 163.9 10.6 84 1-84 100-221 (274)
45 3qkc_B Geranyl diphosphate syn 99.9 4.5E-21 1.5E-25 157.7 13.3 85 1-85 103-223 (273)
46 3vj8_A Squalene synthase; farn 93.7 0.22 7.4E-06 41.6 7.7 119 31-172 138-256 (343)
47 4hd1_A Squalene synthase HPNC; 93.1 0.63 2.2E-05 37.8 9.5 84 67-172 154-237 (294)
48 3acx_A Dehydrosqualene synthas 93.0 1.6 5.6E-05 35.2 11.8 115 31-173 129-243 (293)
49 1di1_A Aristolochene synthase; 69.9 38 0.0013 26.6 12.5 60 31-91 154-214 (300)
50 3rmg_A Octaprenyl-diphosphate 67.7 32 0.0011 28.2 9.0 50 53-114 58-107 (334)
51 3aqb_A Component A of hexapren 66.0 9.4 0.00032 27.5 4.6 39 7-45 73-114 (147)
52 3bny_A Aristolochene synthase; 64.7 51 0.0018 26.1 12.2 60 31-91 168-228 (320)
53 3mzv_A Decaprenyl diphosphate 63.3 29 0.00099 28.5 7.9 50 52-113 63-112 (341)
54 3kb9_A EPI-isozizaene synthase 62.5 43 0.0015 27.7 8.9 59 31-90 208-269 (382)
55 3nf2_A Putative polyprenyl syn 60.7 29 0.00098 28.7 7.4 52 50-113 62-113 (352)
56 2q80_A Geranylgeranyl pyrophos 60.5 64 0.0022 25.9 10.2 45 57-113 40-84 (301)
57 4fp4_A Polyprenyl synthetase; 57.3 52 0.0018 26.4 8.2 42 60-113 66-107 (285)
58 3v1v_A 2-MIB synthase, 2-methy 54.1 42 0.0014 28.6 7.5 72 31-115 286-362 (433)
59 3n0f_A Isoprene synthase; terp 47.9 1.1E+02 0.0038 26.9 9.4 58 31-90 395-457 (555)
60 2ftz_A Geranyltranstransferase 47.8 1E+02 0.0036 24.5 9.3 46 56-113 60-107 (284)
61 3aqb_B Component B of hexapren 47.7 57 0.002 26.4 7.1 50 52-113 54-103 (325)
62 1ps1_A Pentalenene synthase; a 47.5 80 0.0027 25.2 8.0 59 31-90 166-227 (337)
63 3pko_A Geranylgeranyl pyrophos 46.3 80 0.0027 25.8 7.8 43 59-113 73-115 (334)
64 2e8v_A Geranylgeranyl pyrophos 45.1 1.2E+02 0.0043 24.6 9.0 46 56-113 54-99 (340)
65 1v4e_A Octoprenyl-diphosphate 44.9 73 0.0025 25.5 7.3 40 62-113 61-100 (299)
66 3g4d_A (+)-delta-cadinene synt 44.2 1.6E+02 0.0056 25.9 9.9 58 31-90 397-459 (554)
67 4dhd_A Polyprenyl synthetase; 41.5 71 0.0024 26.4 6.8 42 60-113 63-104 (358)
68 1wy0_A Geranylgeranyl pyrophos 39.4 81 0.0028 25.7 6.9 45 57-113 61-105 (342)
69 3pde_A Farnesyl-diphosphate sy 39.4 1.5E+02 0.0051 23.9 8.3 37 65-113 73-111 (309)
70 1wmw_A Geranylgeranyl diphosph 38.8 1.3E+02 0.0044 24.4 7.9 51 51-113 48-98 (330)
71 3oyr_A Trans-isoprenyl diphosp 37.9 44 0.0015 27.5 5.0 36 51-86 74-109 (345)
72 2azj_A Geranylgeranyl pyrophos 37.1 1.3E+02 0.0045 23.9 7.6 49 53-113 60-108 (289)
73 3p8l_A Geranyltranstransferase 36.2 1.7E+02 0.0057 23.5 8.2 39 63-113 72-112 (302)
74 3lmd_A Geranylgeranyl pyrophos 35.0 92 0.0032 25.8 6.5 49 53-113 85-134 (360)
75 3llw_A Geranyltranstransferase 34.3 1.2E+02 0.0041 24.5 7.0 40 62-113 74-115 (311)
76 1rtr_A Geranyltranstransferase 32.1 1.4E+02 0.0047 23.9 7.0 47 55-113 55-103 (301)
77 2q58_A Fragment, farnesyl pyro 27.7 19 0.00065 30.0 1.1 13 132-144 287-299 (368)
78 1rqj_A Geranyltranstransferase 27.3 2.3E+02 0.008 22.4 8.7 49 53-113 55-105 (299)
79 2h8o_A Geranyltranstransferase 26.6 2.6E+02 0.0089 22.7 8.2 49 53-113 96-146 (335)
80 3m0g_A Farnesyl diphosphate sy 24.8 2.6E+02 0.009 22.2 8.7 68 33-113 35-102 (297)
81 3ts7_A Geranyltranstransferase 24.7 2.6E+02 0.0088 22.6 7.4 46 56-113 64-111 (324)
82 3sdr_A Alpha-bisabolene syntha 24.5 1.7E+02 0.0058 27.1 6.8 31 60-90 686-721 (817)
83 3lsn_A Geranyltranstransferase 24.4 1.6E+02 0.0055 23.6 6.1 49 53-113 55-105 (304)
84 3m00_A Aristolochene synthase; 24.2 3E+02 0.01 24.2 8.1 57 31-90 393-454 (550)
85 3lom_A Geranyltranstransferase 23.7 2.5E+02 0.0086 22.6 7.1 51 53-113 61-111 (313)
86 3p8r_A Geranyltranstransferase 22.1 1.6E+02 0.0053 23.6 5.5 50 52-113 60-111 (302)
87 4f62_A Geranyltranstransferase 21.8 3.2E+02 0.011 22.0 9.6 44 58-113 61-106 (317)
88 1n1b_A (+)-bornyl diphosphate 21.8 1.6E+02 0.0053 25.9 5.9 38 67-115 432-470 (549)
89 3uca_A Geranyltranstransferase 20.6 2.1E+02 0.0073 23.1 6.1 49 53-113 85-135 (324)
No 1
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=4e-45 Score=309.61 Aligned_cols=190 Identities=26% Similarity=0.451 Sum_probs=167.6
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChhhh---------------------------HHHHHHHHhcchHHHHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAV 53 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~---------------------------~~~yl~~~~~KTa~L~~~~~~~g 53 (196)
||+++|||+||||+++||+.+++.++++++ +++|++|+.+|||+||++||++|
T Consensus 112 ~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~g 191 (341)
T 3mzv_A 112 WDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVG 191 (341)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHH
Confidence 899999999999999999999988765432 68999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCc-----HHHHHHhcC
Q 029266 54 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP-----QLRAFINSS 128 (196)
Q Consensus 54 a~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~-----~~~~~~~~~ 128 (196)
++++|++++..+.+.+||.++|+||||+||++|++++++.+||+.|+||++||+|||++++++..+ .+.+++.++
T Consensus 192 a~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~ 271 (341)
T 3mzv_A 192 GIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKG 271 (341)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999864 356777776
Q ss_pred CCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 129 SDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 129 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
..++++++++++++.++|+++++++.++++.++|.+.|+.+|+++ .++.|..|++++++|++
T Consensus 272 ~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 272 DQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHP------LRQMLDDLADYVVERVR 333 (341)
T ss_dssp CCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHTGGGC
T ss_pred CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhccc
Confidence 667888999999999999999999999999999999999999887 99999999999999974
No 2
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=2.1e-45 Score=311.46 Aligned_cols=189 Identities=30% Similarity=0.425 Sum_probs=154.2
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChhhh---------------------------HHHHHHHHhcchHHHHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAV 53 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~---------------------------~~~yl~~~~~KTa~L~~~~~~~g 53 (196)
||+++|||+||||+++||+.+++.++++++ +++|++|+.+|||+||++||++|
T Consensus 124 ~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~g 203 (345)
T 3oyr_A 124 WGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAG 203 (345)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHH
Confidence 899999999999999999999988775433 68999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhC-c----HHHHHHhcC
Q 029266 54 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-P----QLRAFINSS 128 (196)
Q Consensus 54 a~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~-~----~~~~~~~~~ 128 (196)
++++|++++..+.+.+||.++|+||||+||++|++++++.+|||.|+||++||+|||++++++.. + .+.+++.++
T Consensus 204 a~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~ 283 (345)
T 3oyr_A 204 AVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRR 283 (345)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHHSCSHHHHHHHHHCC--
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999875 3 355666666
Q ss_pred CCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHccc
Q 029266 129 SDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 195 (196)
Q Consensus 129 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 195 (196)
..++++++++++++.++|+++++++.++++.++|.+.|+.+|+++ .++.|..|++++++|+
T Consensus 284 ~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 284 EQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPAND------WREALEELADFAVSRR 344 (345)
T ss_dssp --CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSH------HHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhcc
Confidence 667788999999999999999999999999999999999999887 9999999999999996
No 3
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=2.3e-44 Score=306.22 Aligned_cols=196 Identities=69% Similarity=1.048 Sum_probs=179.8
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChhhh---------------------------HHHHHHHHhcchHHHHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAV 53 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~---------------------------~~~yl~~~~~KTa~L~~~~~~~g 53 (196)
||+++|||+||||++.||+.+++.++++++ +++|++|+.+|||+||++||++|
T Consensus 126 ~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~g 205 (348)
T 3apz_A 126 MGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAV 205 (348)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHH
Confidence 899999999999999999999988765432 67899999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHHhcCCCChh
Q 029266 54 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPA 133 (196)
Q Consensus 54 a~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~~ 133 (196)
++++|++++..+.+.+||.++|+||||+||++|++++++.+|||.|+||++||+|||++++++..|++++++.+...+++
T Consensus 206 a~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~ 285 (348)
T 3apz_A 206 AVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPR 285 (348)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTH
T ss_pred HHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999988877788
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 134 NVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 134 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+++++++++.++|+++++++.++++.++|.+.|+.+|.+........++.|..|++++++|++
T Consensus 286 ~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 286 NVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999976410001168999999999999975
No 4
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=1.1e-44 Score=306.18 Aligned_cols=190 Identities=26% Similarity=0.465 Sum_probs=176.2
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCC-hhhh---------------------------HHHHHHHHhcchHHHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKH-TEVI---------------------------MECYMQKTYNKTAALVSNSCKA 52 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~-~~~~---------------------------~~~yl~~~~~KTa~L~~~~~~~ 52 (196)
||+++|||+||||++.||+.+++..+ ++++ +++|++|+.+|||+||++||++
T Consensus 115 ~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ 194 (334)
T 3pko_A 115 YGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQ 194 (334)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHH
Confidence 79999999999999999999998654 4322 6789999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCc-HHHHHHh-cCCC
Q 029266 53 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP-QLRAFIN-SSSD 130 (196)
Q Consensus 53 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~-~~~~~~~-~~~~ 130 (196)
|++++|++++..+.+.+||.++|+||||+||++|++++++.+|||.|+|+++||+|||++++++..+ ++.+++. ....
T Consensus 195 ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~l~~~l~~~~~~ 274 (334)
T 3pko_A 195 GAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAM 274 (334)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGGGSHHHHHHHHTTGGGC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHHhCcHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 7788884 3345
Q ss_pred ChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 131 NPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 131 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
++++++++++++.++|+++++++.++++.++|.+.|+.+|.++ .++.|..|++++++|++
T Consensus 275 ~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~~ 334 (334)
T 3pko_A 275 TLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGS------AQQSLEQLTRLLLRRDH 334 (334)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSH------HHHHHHHHHHHHTTCC-
T ss_pred CHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhccC
Confidence 8889999999999999999999999999999999999999987 89999999999999975
No 5
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-44 Score=304.82 Aligned_cols=189 Identities=27% Similarity=0.425 Sum_probs=170.3
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChhhh---------------------------HHHHHHHHhcchHHHHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAV 53 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~---------------------------~~~yl~~~~~KTa~L~~~~~~~g 53 (196)
||+++|||+||||+++||+.+++.++++++ +++|++|+.+|||+||++||++|
T Consensus 106 ~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~g 185 (334)
T 3rmg_A 106 FNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAA 185 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHH
Confidence 799999999999999999999987765432 68999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhC-----cHHHHHHhcC
Q 029266 54 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-----PQLRAFINSS 128 (196)
Q Consensus 54 a~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~-----~~~~~~~~~~ 128 (196)
++++|++++..+.+.+||.++|+||||+||++|++ +++.+|||.|+||++||+|||++++++.. +++.+++.++
T Consensus 186 a~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~ 264 (334)
T 3rmg_A 186 ALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEG 264 (334)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCC
Confidence 99999999999999999999999999999999999 57889999999999999999999999974 2577888887
Q ss_pred CCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 129 SDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 129 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
..++++++++++++.++|+++++++.++++.++|.+.|+.+|+++ .++.|..|++++++|++
T Consensus 265 ~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 265 TATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSN------ICLALRTYLDYVVAREK 326 (334)
T ss_dssp CCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhccc
Confidence 788999999999999999999999999999999999999999887 89999999999999974
No 6
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=1.6e-44 Score=306.86 Aligned_cols=190 Identities=25% Similarity=0.362 Sum_probs=173.0
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCCh---hhh---------------------------HHHHHHHHhcchHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHT---EVI---------------------------MECYMQKTYNKTAALVSNSC 50 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~---~~~---------------------------~~~yl~~~~~KTa~L~~~~~ 50 (196)
||+++|||+||||+++||+.+++.+++ +++ +++|++|+.+|||+||++||
T Consensus 113 ~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~ 192 (352)
T 3nf2_A 113 HGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACAS 192 (352)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHH
Confidence 799999999999999999999998775 222 68999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhC-c---HHHHHHh
Q 029266 51 KAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-P---QLRAFIN 126 (196)
Q Consensus 51 ~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~-~---~~~~~~~ 126 (196)
++|++++|++++..+.+.+||+++|+||||+||++|++++++.+|||.|+||++||+|||++++++.. | ++.+++.
T Consensus 193 ~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~ 272 (352)
T 3nf2_A 193 SIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILT 272 (352)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999985 3 5667776
Q ss_pred cC-------CCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCC-CCCcchHHHHHHHHHHHHHHHcccC
Q 029266 127 SS-------SDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPE-THDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 127 ~~-------~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~-~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+. ..++++++++++++.++|+++++++.++++.++|++.|+.+|+ ++ .|+.|..|++++++|++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~------~r~~L~~la~~~~~R~~ 344 (352)
T 3nf2_A 273 ADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDR------VRDRFTALADFVVVRKR 344 (352)
T ss_dssp HHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHH------HHHHHHHHHHHHCC---
T ss_pred ccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCcH------HHHHHHHHHHHHHhccc
Confidence 53 3477889999999999999999999999999999999999997 44 89999999999999964
No 7
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=2.4e-44 Score=306.21 Aligned_cols=189 Identities=29% Similarity=0.477 Sum_probs=169.0
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChhhh--------------------------HHHHHHHHhcchHHHHHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTEVI--------------------------MECYMQKTYNKTAALVSNSCKAVA 54 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~--------------------------~~~yl~~~~~KTa~L~~~~~~~ga 54 (196)
||+++|||+||||+++||+.+++.+. +++ +++|++|+.+|||+||++||++|+
T Consensus 134 ~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~~~~~~~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga 212 (360)
T 3lmd_A 134 WDNSVAILAGDILLAHASGLMSQLGT-DTVAHFAETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGA 212 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 79999999999999999999987653 221 678999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhC----cHHHHHHhcCCC
Q 029266 55 YLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF----PQLRAFINSSSD 130 (196)
Q Consensus 55 ~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~----~~~~~~~~~~~~ 130 (196)
+++|++++..+.+.+||.++|+||||+||++|++++++.+||+.++||++||+|||++++++.. +++.+++.+...
T Consensus 213 ~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~ 292 (360)
T 3lmd_A 213 MHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLE 292 (360)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCC
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999874 367888888777
Q ss_pred ChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 131 NPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 131 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
++++++++++++.++|+++++++.++++.++|.+.|+.+|+++ .++.|..|++++++|+.
T Consensus 293 ~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 293 DDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDST------VKEALRNLATFTVKRVG 352 (360)
T ss_dssp SHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHhcc
Confidence 8899999999999999999999999999999999999999887 89999999999999974
No 8
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-43 Score=300.59 Aligned_cols=190 Identities=31% Similarity=0.427 Sum_probs=170.1
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCC-----Chhhh---------------------------HHHHHHHHhcchHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLK-----HTEVI---------------------------MECYMQKTYNKTAALVSN 48 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~-----~~~~~---------------------------~~~yl~~~~~KTa~L~~~ 48 (196)
||+++|||+||||++.||+.+++.. +++++ +++|++|+.+|||+||++
T Consensus 105 ~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~ 184 (342)
T 1wy0_A 105 WGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEA 184 (342)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHH
Confidence 7999999999999999999999872 22221 689999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCc-H----HHH
Q 029266 49 SCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP-Q----LRA 123 (196)
Q Consensus 49 ~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~-~----~~~ 123 (196)
||++|++++|++++..+.+.+||.++|+||||+||++|++++++.+|||.|+||++||+|||++++++..+ . +.+
T Consensus 185 ~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~ 264 (342)
T 1wy0_A 185 SAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLK 264 (342)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999763 3 444
Q ss_pred HHhcCC-----------CChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHH
Q 029266 124 FINSSS-----------DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKII 192 (196)
Q Consensus 124 ~~~~~~-----------~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~ 192 (196)
++.+.. .++++++++++++.++|+++++++.++++.++|.+.|+.+|+++ .++.|..|+++++
T Consensus 265 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~------~~~~L~~l~~~~~ 338 (342)
T 1wy0_A 265 IFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKSK------ARMDLELLAKFIV 338 (342)
T ss_dssp TSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCCH------HHHHHHHHHHHTT
T ss_pred HHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHH
Confidence 444332 13678999999999999999999999999999999999999877 8999999999999
Q ss_pred cccC
Q 029266 193 TRNK 196 (196)
Q Consensus 193 ~R~~ 196 (196)
+|++
T Consensus 339 ~R~~ 342 (342)
T 1wy0_A 339 EREY 342 (342)
T ss_dssp TCC-
T ss_pred hccC
Confidence 9975
No 9
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=4.9e-43 Score=295.48 Aligned_cols=188 Identities=30% Similarity=0.481 Sum_probs=173.1
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChhhh---------------------------HHHHHHHHhcchHHHHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAV 53 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~---------------------------~~~yl~~~~~KTa~L~~~~~~~g 53 (196)
||+++|||+||||++.||+.+++.++++++ +++|++|+.+|||+||++||++|
T Consensus 103 ~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~g 182 (325)
T 3aqb_B 103 FDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLG 182 (325)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 899999999999999999999988765432 68999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCc-----HHH---HHH
Q 029266 54 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP-----QLR---AFI 125 (196)
Q Consensus 54 a~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~-----~~~---~~~ 125 (196)
++++|++++..+.+.+||.++|++|||+||++|++++++.+|||.|+||++||+|||++++++..+ .+. +++
T Consensus 183 a~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~ 262 (325)
T 3aqb_B 183 ALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHL 262 (325)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998753 455 666
Q ss_pred hcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 126 NSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 126 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
.++.. +++++++++++.++ +++++++.++++.++|.+.|+.+|.++ .++.|..+++++++|++
T Consensus 263 ~~~~~-~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 263 TSTSD-DEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQLQDSN------IKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp CTTCC-HHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTSCCCH------HHHHHHHHHHHHTTTTC
T ss_pred cCCCC-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhCcC
Confidence 54433 78899999999999 999999999999999999999999887 89999999999999975
No 10
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=1.2e-42 Score=291.49 Aligned_cols=180 Identities=25% Similarity=0.374 Sum_probs=163.4
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChhhh---------------------------HHHHHHHHhcchHHHHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAV 53 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~---------------------------~~~yl~~~~~KTa~L~~~~~~~g 53 (196)
||+++|||+||||++.||+.+++.+ ++++ +++|++|+.+|||+||++||++|
T Consensus 96 ~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~g 174 (315)
T 3tc1_A 96 FGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSM 174 (315)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHH
Confidence 8999999999999999999998876 4322 68999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhC-c----HHHHHHhcC
Q 029266 54 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-P----QLRAFINSS 128 (196)
Q Consensus 54 a~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~-~----~~~~~~~~~ 128 (196)
++++|++ .+.+.+||.++|+||||+||++|++++++.+|||.|+|+++||+|||++++++.. | ++.+++.++
T Consensus 175 a~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~ 251 (315)
T 3tc1_A 175 AILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLISYFKQD 251 (315)
T ss_dssp HHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTTSCHHHHHHHHHTTTCC
T ss_pred HHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 9999998 6789999999999999999999999999999999999999999999999999984 3 345556554
Q ss_pred CCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHH
Q 029266 129 SDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKII 192 (196)
Q Consensus 129 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~ 192 (196)
++++++++++++.++|+++++++.++++.++|.+.|+.+|+++ .|+.|..|++++.
T Consensus 252 --~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~------~r~~L~~l~~~~~ 307 (315)
T 3tc1_A 252 --SHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLI------LEKLAQDVISRTF 307 (315)
T ss_dssp --CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHH------HHHHHHHHHCC--
T ss_pred --CHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999988 9999999998765
No 11
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=3.9e-42 Score=294.75 Aligned_cols=189 Identities=25% Similarity=0.353 Sum_probs=168.9
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCCh-h----h-----------h----------------HHHHHHHHhcchHHH-HH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHT-E----V-----------I----------------MECYMQKTYNKTAAL-VS 47 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~-~----~-----------~----------------~~~yl~~~~~KTa~L-~~ 47 (196)
||+++|||+||||+++||+++++.+.+ + + + +++|++|+.+|||+| |+
T Consensus 143 ~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~ 222 (380)
T 3lk5_A 143 FGVSVSILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIA 222 (380)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHH
Confidence 699999999999999999999986531 1 1 0 678999999999999 89
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhC----c----
Q 029266 48 NSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF----P---- 119 (196)
Q Consensus 48 ~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~----~---- 119 (196)
+||++|++++|++++..+.+.+||.++|+||||+||++|++++++.+|||.|+||++||+|+|++++++.. |
T Consensus 223 ~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~ 302 (380)
T 3lk5_A 223 RPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAAT 302 (380)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874 3
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHccc
Q 029266 120 QLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 195 (196)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 195 (196)
++.+++++ ..++++++++++++.++|+++++++.++++.++|++.|+.+|.++. .|+.|..|++.+..|+
T Consensus 303 ~L~~~l~~-~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~-----~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 303 AIRAGVGK-VTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDE-----VRAQLRALAIRSTERR 372 (380)
T ss_dssp HHHHHTTT-CCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHH-----HHHHHHHHHHHHHC--
T ss_pred HHHHHHCC-CCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHHHHhh
Confidence 34556643 3578889999999999999999999999999999999999996431 8999999999999885
No 12
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=1.9e-41 Score=288.75 Aligned_cols=187 Identities=22% Similarity=0.313 Sum_probs=163.9
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCC-hh---------------------------------------hhHHHHHHHHhc
Q 029266 1 MGNKLAILAGDLLISRALVALASLKH-TE---------------------------------------VIMECYMQKTYN 40 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~-~~---------------------------------------~~~~~yl~~~~~ 40 (196)
||+++|||+||||++.||+.+.+.+. .+ +.+++|++|+.+
T Consensus 104 ~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~ 183 (358)
T 4dhd_A 104 FGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSL 183 (358)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHc
Confidence 79999999999999999999875432 11 114679999999
Q ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccC-cHHHHHHhhhC-
Q 029266 41 KTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGII-TAPILFAMEEF- 118 (196)
Q Consensus 41 KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~-T~p~i~al~~~- 118 (196)
|||+||++||++|++++|++++..+.+.+||.++|+||||+||++|++++++.+|||.|+||++||+ |||++++++..
T Consensus 184 KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~ 263 (358)
T 4dhd_A 184 KTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLG 263 (358)
T ss_dssp HTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999999985
Q ss_pred c----HHHHHHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcc
Q 029266 119 P----QLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 194 (196)
Q Consensus 119 ~----~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R 194 (196)
+ ++.+++.+...++++++++++++.++|+++++++.++++.++|.+.|+.+|++ . .|+.|++++++|
T Consensus 264 ~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~-------~--~L~~la~~~~~R 334 (358)
T 4dhd_A 264 EGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNN-------G--TLKELLDFIVAR 334 (358)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSC-------H--HHHHHHHHHTTT
T ss_pred hhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCC-------H--HHHHHHHHHHhc
Confidence 2 47788888777899999999999999999999999999999999999999943 3 799999999999
Q ss_pred cC
Q 029266 195 NK 196 (196)
Q Consensus 195 ~~ 196 (196)
++
T Consensus 335 ~~ 336 (358)
T 4dhd_A 335 EY 336 (358)
T ss_dssp TT
T ss_pred cc
Confidence 74
No 13
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=6.6e-42 Score=289.14 Aligned_cols=187 Identities=28% Similarity=0.312 Sum_probs=165.5
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCC-----hhhh-----------------------------HHHHHHHHhcchHHH-
Q 029266 1 MGNKLAILAGDLLISRALVALASLKH-----TEVI-----------------------------MECYMQKTYNKTAAL- 45 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~-----~~~~-----------------------------~~~yl~~~~~KTa~L- 45 (196)
||+++|||+||||+++||+.+++..+ ++++ +++|++|+.+|||+|
T Consensus 98 ~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls 177 (330)
T 1wmw_A 98 HPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYT 177 (330)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHH
Confidence 89999999999999999999987522 2211 467999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCc-----H
Q 029266 46 VSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP-----Q 120 (196)
Q Consensus 46 ~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~-----~ 120 (196)
|++||++|++++|++++.. +.+||.++|++|||+||++|++++++ +||+.|+||++||+|||++++++..+ .
T Consensus 178 ~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~ 254 (330)
T 1wmw_A 178 AVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRTLILLRFLEEAPPEERAR 254 (330)
T ss_dssp HHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCCHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCCHHHHHHHHhCCHHHHHH
Confidence 9999999999999987666 99999999999999999999999999 99999999999999999999998864 3
Q ss_pred HHHHHhcCCCC--hhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhc----cCCCCCCcchHHHHHHHHHHHHHHHcc
Q 029266 121 LRAFINSSSDN--PANVDVILEYLGKSHGIQRTTELALKHASLAAAAID----SLPETHDVDATNARTALVHITQKIITR 194 (196)
Q Consensus 121 ~~~~~~~~~~~--~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~----~lp~~~~~~~~~~~~~L~~l~~~~~~R 194 (196)
+.+++.+...+ +++++++++++.++|+++++++.+++|.++|.+.|+ .+|.++ .++.|..|++++++|
T Consensus 255 l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~------~~~~L~~l~~~~~~R 328 (330)
T 1wmw_A 255 ALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKE------ALDHLRGLLAALVER 328 (330)
T ss_dssp HHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHH------HHHHHHHHHHHHHHC
T ss_pred HHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcH------HHHHHHHHHHHHHhc
Confidence 45566543333 788999999999999999999999999999999999 999866 899999999999999
Q ss_pred cC
Q 029266 195 NK 196 (196)
Q Consensus 195 ~~ 196 (196)
++
T Consensus 329 ~~ 330 (330)
T 1wmw_A 329 RA 330 (330)
T ss_dssp --
T ss_pred cC
Confidence 75
No 14
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=8.2e-41 Score=279.04 Aligned_cols=183 Identities=20% Similarity=0.229 Sum_probs=157.1
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChhhh----------------------------HHHHHHHHhcchHHHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTEVI----------------------------MECYMQKTYNKTAALVSNSCKA 52 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~----------------------------~~~yl~~~~~KTa~L~~~~~~~ 52 (196)
||+++|||+||||+++||+.+++.++++++ +++|++|+.+|||+||++||++
T Consensus 84 ~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ 163 (301)
T 2q80_A 84 YGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGL 163 (301)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHH
Confidence 799999999999999999999987654321 6789999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCc---HHHHHHhcCC
Q 029266 53 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP---QLRAFINSSS 129 (196)
Q Consensus 53 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~---~~~~~~~~~~ 129 (196)
|++++|.++ .+.+||.++|++|||+||++|+++++..+|||.|+||++||+|||++++++..| ++.+++.+..
T Consensus 164 ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~l~~~~ 239 (301)
T 2q80_A 164 MQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRT 239 (301)
T ss_dssp HHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred HHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHHHhcCC
Confidence 999999874 489999999999999999999999999999999999999999999999999754 4777776665
Q ss_pred CChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 130 DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 130 ~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
.+.+..+++++++.++|+++++++.++++.++|.+.|+.+|.++ . |+.+++++.+|.+
T Consensus 240 ~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~------~---L~~l~~~l~~~~~ 297 (301)
T 2q80_A 240 ENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP------E---LVALVKHLSKMFK 297 (301)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH------H---HHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH------H---HHHHHHHHHHHhc
Confidence 55555556999999999999999999999999999999999765 2 8999999988753
No 15
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=4.1e-41 Score=285.21 Aligned_cols=191 Identities=20% Similarity=0.275 Sum_probs=138.3
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChh-----hh------------------------------HHHHHHHHhcchHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTE-----VI------------------------------MECYMQKTYNKTAAL 45 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~-----~~------------------------------~~~yl~~~~~KTa~L 45 (196)
||+++|||+||||+++||+.+++.++++ ++ +++|++|+.+|||+|
T Consensus 99 ~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L 178 (340)
T 2e8v_A 99 FGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGL 178 (340)
T ss_dssp TCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHH
Confidence 8999999999999999999999876543 21 467999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCc------
Q 029266 46 VSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP------ 119 (196)
Q Consensus 46 ~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~------ 119 (196)
|++||++|++++|+++ ..+.+.+||.++|+||||+||++|+++++..+|||.|+||++||+|+|++++++..+
T Consensus 179 ~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~ 257 (340)
T 2e8v_A 179 FRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTE 257 (340)
T ss_dssp HHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCcccccch
Confidence 9999999999999987 578999999999999999999999999999999999999999999999999998753
Q ss_pred ---HHHHHHhcCCCChhhHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHH-----hccCCCCCCcchHHHHHHHHHHHHH
Q 029266 120 ---QLRAFINSSSDNPANVDVILEYLG-KSHGIQRTTELALKHASLAAAA-----IDSLPETHDVDATNARTALVHITQK 190 (196)
Q Consensus 120 ---~~~~~~~~~~~~~~~~~~i~~~~~-~~g~~~~~~~~~~~~~~~a~~~-----l~~lp~~~~~~~~~~~~~L~~l~~~ 190 (196)
++..++.+...+.+..+++++++. ++|+++++++.+++|.++|++. |+.+|+++.+ ..+.|+.|..|+++
T Consensus 258 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~~-~~~~~~~L~~l~~~ 336 (340)
T 2e8v_A 258 QHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDT-ATNLHDELLYIIDH 336 (340)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC------------------------------
T ss_pred hHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCccc-cHHHHHHHHHHHHH
Confidence 266777666555555568999999 9999999999999999999999 9999976410 11168899999999
Q ss_pred HHc
Q 029266 191 IIT 193 (196)
Q Consensus 191 ~~~ 193 (196)
+.+
T Consensus 337 l~~ 339 (340)
T 2e8v_A 337 LSE 339 (340)
T ss_dssp ---
T ss_pred HHh
Confidence 875
No 16
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=5.6e-40 Score=273.66 Aligned_cols=164 Identities=25% Similarity=0.430 Sum_probs=151.2
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChhhh--------------------------HHHHHHHHhcchHHHHHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTEVI--------------------------MECYMQKTYNKTAALVSNSCKAVA 54 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~--------------------------~~~yl~~~~~KTa~L~~~~~~~ga 54 (196)
||+++|||+||||++.||+.+++.++++++ +++|++|+.+|||+||++||++|+
T Consensus 100 ~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga 179 (299)
T 1v4e_A 100 YGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPA 179 (299)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHH
Confidence 799999999999999999999987664432 578999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHHhcCCCChhh
Q 029266 55 YLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPAN 134 (196)
Q Consensus 55 ~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~~~ 134 (196)
+++|+++ +.+.+||.++|++|||+||++|++++ +.+|||.|+|+++||+|||++++++..+.+++++.+ ++
T Consensus 180 ~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~al~~~~~l~~~l~~-----~~ 250 (299)
T 1v4e_A 180 LLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFEN-----RD 250 (299)
T ss_dssp HHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHHHHHCHHHHHHHHT-----TC
T ss_pred HHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHHHHhChHHHHHHhH-----HH
Confidence 9999876 78999999999999999999999999 999999999999999999999999987667777755 56
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 029266 135 VDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 173 (196)
Q Consensus 135 ~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~ 173 (196)
++++++++.++|+++++++.++++.++|.+.|+.+|...
T Consensus 251 ~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 251 WSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred HHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 789999999999999999999999999999999999765
No 17
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=7.3e-40 Score=279.80 Aligned_cols=187 Identities=17% Similarity=0.122 Sum_probs=166.6
Q ss_pred Cch--hHHHHHhhHHHHHHHHHHHcC-----CChh-------------------------------------------hh
Q 029266 1 MGN--KLAILAGDLLISRALVALASL-----KHTE-------------------------------------------VI 30 (196)
Q Consensus 1 ~G~--~~Ail~GD~L~~~a~~~l~~~-----~~~~-------------------------------------------~~ 30 (196)
||+ ++||++||||++.||+++++. .+++ ..
T Consensus 117 ~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
T 1yhl_A 117 PGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFT 196 (362)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCS
T ss_pred cCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCC
Confidence 788 589999999999999998764 1111 12
Q ss_pred HHHHHHHHhcchHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCc
Q 029266 31 MECYMQKTYNKTAAL-VSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIIT 108 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L-~~~~~~~ga~lag-~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T 108 (196)
+++|++|+.+|||+| |++||++|++++| ++++..+.+.+||.++|+||||+||++|++++++.+|| .|+||++||+|
T Consensus 197 ~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK-~g~Dl~egK~T 275 (362)
T 1yhl_A 197 PAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIEDAKCS 275 (362)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCC
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC-ChhhHhcCCch
Confidence 467999999999999 9999999999999 78888899999999999999999999999999999999 89999999999
Q ss_pred HHHHHHhhhCc-HH----HHHHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHH--
Q 029266 109 APILFAMEEFP-QL----RAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNAR-- 181 (196)
Q Consensus 109 ~p~i~al~~~~-~~----~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~-- 181 (196)
||++++++..+ +. .+++.+. ++++++++++++.++|+++++++.++++.++|.+.|+.+|.++ .+
T Consensus 276 ~p~l~al~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~~~~ 347 (362)
T 1yhl_A 276 WLAVTFLGKANAAQVAEFKANYGDK--DPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKS------PTFA 347 (362)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTC------HHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCc------hhHH
Confidence 99999999863 33 3444332 4788999999999999999999999999999999999999988 78
Q ss_pred HHHHHHHHHHHcccC
Q 029266 182 TALVHITQKIITRNK 196 (196)
Q Consensus 182 ~~L~~l~~~~~~R~~ 196 (196)
+.|..|++++++|++
T Consensus 348 ~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 348 ESVAVVWEKTHKRKK 362 (362)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999986
No 18
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=4e-39 Score=275.95 Aligned_cols=189 Identities=18% Similarity=0.157 Sum_probs=164.5
Q ss_pred Cchh-HHHHHhhHHHHHHHHHHHcC-----CChhh--------------------------------hHHHHHHHHhcch
Q 029266 1 MGNK-LAILAGDLLISRALVALASL-----KHTEV--------------------------------IMECYMQKTYNKT 42 (196)
Q Consensus 1 ~G~~-~Ail~GD~L~~~a~~~l~~~-----~~~~~--------------------------------~~~~yl~~~~~KT 42 (196)
||++ +||+.||+|++.+|.++++. ...++ .+++|++|+.+||
T Consensus 143 ~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KT 222 (374)
T 2qis_A 143 PGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKS 222 (374)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCc
Confidence 8999 99999999999999988753 11111 1468999999999
Q ss_pred HHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhC-c
Q 029266 43 AAL-VSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-P 119 (196)
Q Consensus 43 a~L-~~~~~~~ga~lag-~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~-~ 119 (196)
|+| |++||++|++++| ++++..+.+.+||.++|+||||+||++|++++++.+|| .|+||++||+|||++++++.. +
T Consensus 223 a~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~T~p~l~al~~a~~ 301 (374)
T 2qis_A 223 AFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQRATP 301 (374)
T ss_dssp HHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCCHHHHHHHHHCCH
T ss_pred cHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCccHHHHHHHHhCCH
Confidence 999 9999999999999 89999999999999999999999999999999999999 999999999999999999985 3
Q ss_pred HHHHHHhcCC--CChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 120 QLRAFINSSS--DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 120 ~~~~~~~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+.++.+.... .++++++++++++.++|+.++++..++++.++|.+.|+.+|.++ .++.|..|++++++|+|
T Consensus 302 ~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~------~k~~L~~l~~~i~~R~k 374 (374)
T 2qis_A 302 EQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPL------PPAVFLGLARKIYKRRK 374 (374)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTS------CHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHHcCcC
Confidence 4444443322 24678999999999999999999999999999999999999887 89999999999999985
No 19
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=6.6e-39 Score=267.46 Aligned_cols=157 Identities=27% Similarity=0.364 Sum_probs=131.2
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcC-C-----Chhhh----------------------------HHHHHHHHhcchHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASL-K-----HTEVI----------------------------MECYMQKTYNKTAALV 46 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~-~-----~~~~~----------------------------~~~yl~~~~~KTa~L~ 46 (196)
||+++||++||||++.||+.+++. + ..+++ +++|++|+.+|||+||
T Consensus 103 ~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~ 182 (301)
T 1rtr_A 103 YGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALL 182 (301)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHH
Confidence 799999999999999999999986 1 11111 5789999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHHh
Q 029266 47 SNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFIN 126 (196)
Q Consensus 47 ~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~ 126 (196)
++||++|++++|++++..+.+.+||.++|++|||+||++|++++++.+||+.++|+++||+|||+++
T Consensus 183 ~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~------------- 249 (301)
T 1rtr_A 183 TFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLL------------- 249 (301)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHH-------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHH-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 127 SSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 127 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+++++++.++++.++|.+.|+.+|++. .++.|..|++++++|++
T Consensus 250 --------------------al~~a~~~a~~~~~~A~~~L~~l~~~~------~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 250 --------------------GKDGAEDKLTYHRDAAVDELTQIDEQF------NTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHTSCTTS------CCHHHHHHHHHHHCC--
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHHHhhc
Confidence 678899999999999999999999766 67899999999999974
No 20
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=2.8e-38 Score=270.06 Aligned_cols=189 Identities=21% Similarity=0.185 Sum_probs=166.7
Q ss_pred Cchh-HHHHHhhHHHHHHHHHHHcC-----CChhh--------------------------------hHHHHHHHHhcch
Q 029266 1 MGNK-LAILAGDLLISRALVALASL-----KHTEV--------------------------------IMECYMQKTYNKT 42 (196)
Q Consensus 1 ~G~~-~Ail~GD~L~~~a~~~l~~~-----~~~~~--------------------------------~~~~yl~~~~~KT 42 (196)
||++ ++|+.||++++.||+++++. ...++ .+++|++|+.+||
T Consensus 136 ~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KT 215 (367)
T 1uby_A 136 EGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKT 215 (367)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCc
Confidence 7888 89999999999999998864 11111 1568999999999
Q ss_pred HHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhC-c
Q 029266 43 AAL-VSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-P 119 (196)
Q Consensus 43 a~L-~~~~~~~ga~lag-~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~-~ 119 (196)
|+| |++||++|++++| ++++..+.+.+||.++|++|||+||++|++++++.+|| .|+||++||+|||++++++.. +
T Consensus 216 a~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~ 294 (367)
T 1uby_A 216 AFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCSWLVVQCLQRVTP 294 (367)
T ss_dssp HHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCCHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCchHHHHHHHHhCCH
Confidence 999 9999999999999 89999999999999999999999999999999999999 999999999999999999984 4
Q ss_pred HHHHHHhcCC--CChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 120 QLRAFINSSS--DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 120 ~~~~~~~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+.++.+.... .++++++++++++.++|+.++++..++++.++|.+.|+.+|+++ .++.|..|++++++|++
T Consensus 295 ~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 295 EQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL------PKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSS------CTHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhCcC
Confidence 4444443322 24678999999999999889999999999999999999999877 78999999999999986
No 21
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=6.2e-38 Score=262.57 Aligned_cols=155 Identities=30% Similarity=0.422 Sum_probs=125.6
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCC--h----hhh----------------------------HHHHHHHHhcchHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKH--T----EVI----------------------------MECYMQKTYNKTAALV 46 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~--~----~~~----------------------------~~~yl~~~~~KTa~L~ 46 (196)
||+++|||+||+|++.||+.+++.++ + +++ +++|++|+.+|||+||
T Consensus 106 ~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~ 185 (317)
T 4f62_A 106 FDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALI 185 (317)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHH
Confidence 89999999999999999999998632 1 111 5789999999999999
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHH
Q 029266 47 SNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFI 125 (196)
Q Consensus 47 ~~~~~~ga~lag-~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~ 125 (196)
++||++|++++| ++++..+.+.+||.++|+||||+||++|++++++.+||+.|+|+++||+|||+++
T Consensus 186 ~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~------------ 253 (317)
T 4f62_A 186 KASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLL------------ 253 (317)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHH------------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHH------------
Confidence 999999999999 7999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 126 NSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 126 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+++++++.++++.++|.+.|+.+|+ .++.|..|++++++|++
T Consensus 254 ---------------------gle~a~~~a~~~~~~A~~~L~~l~~--------~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 254 ---------------------GLDGAKALVVRLHEQAIAQISEFGD--------KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHGGGGG--------GGHHHHHHHHHHHC---
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHhCch--------hHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999985 35889999999999974
No 22
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=5.8e-38 Score=263.43 Aligned_cols=155 Identities=27% Similarity=0.298 Sum_probs=129.0
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCC--C--h----hhh----------------------------HHHHHHHHhcchHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLK--H--T----EVI----------------------------MECYMQKTYNKTAA 44 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~--~--~----~~~----------------------------~~~yl~~~~~KTa~ 44 (196)
||+++|||+||+|++.||+.+++.. + + +++ +++|++|+.+|||+
T Consensus 111 ~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~ 190 (324)
T 3ts7_A 111 YDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGA 190 (324)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHH
Confidence 8999999999999999999999874 2 1 111 57899999999999
Q ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHH
Q 029266 45 LVSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRA 123 (196)
Q Consensus 45 L~~~~~~~ga~lag-~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~ 123 (196)
||++||++|++++| ++++..+.+.+||.++|+||||+||++|++++++.+||+.|+|+++||+|||+++
T Consensus 191 L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~---------- 260 (324)
T 3ts7_A 191 LIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALL---------- 260 (324)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHH----------
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHH----------
Confidence 99999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 124 FINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 124 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+++++++.++++.++|.+.|+.+|.+ ++.|..|++++++|++
T Consensus 261 -----------------------gle~a~~~a~~~~~~A~~~L~~l~~~--------~~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 261 -----------------------GLSGAKEKAEEMHEAALESLAGFGPE--------ADLLRELARFIIQRQS 302 (324)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHTTTTCCGG--------GHHHHHHHHHHHHTSS
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHhCCcc--------HHHHHHHHHHHHhccC
Confidence 79999999999999999999999864 3789999999999974
No 23
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=5.9e-38 Score=261.61 Aligned_cols=155 Identities=26% Similarity=0.345 Sum_probs=125.6
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCC--C--h----hh-------------h---------------HHHHHHHHhcchHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLK--H--T----EV-------------I---------------MECYMQKTYNKTAA 44 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~--~--~----~~-------------~---------------~~~yl~~~~~KTa~ 44 (196)
||+.+|||+||||++.||+.+++.. + + ++ + +++|++|+.+|||+
T Consensus 111 ~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~ 190 (302)
T 3p8r_A 111 FDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGA 190 (302)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCHHHHHHHhccCcHH
Confidence 8999999999999999999999874 1 1 01 1 57899999999999
Q ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHH
Q 029266 45 LVSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRA 123 (196)
Q Consensus 45 L~~~~~~~ga~lag-~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~ 123 (196)
||++||++|++++| ++++..+.+.+||.++|++|||+||++|++++++.+||+.++|+++||+|||+++
T Consensus 191 L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~---------- 260 (302)
T 3p8r_A 191 LMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALL---------- 260 (302)
T ss_dssp HHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHH----------
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHH----------
Confidence 99999999999999 7888889999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 124 FINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 124 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+++++++.++++.++|.+.|+.+|.+. +.|..|++++++|++
T Consensus 261 -----------------------~l~~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 261 -----------------------GLEGAQQKAHTLLQEALLALEAIPYNT--------EHLEEFARYVVERKN 302 (302)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHTTCSSCT--------HHHHHHHHHHHHCCC
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 789999999999999999999999754 789999999999975
No 24
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=8.6e-38 Score=260.72 Aligned_cols=155 Identities=31% Similarity=0.383 Sum_probs=129.7
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCC----Chh----hh----------------------------HHHHHHHHhcchHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLK----HTE----VI----------------------------MECYMQKTYNKTAA 44 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~----~~~----~~----------------------------~~~yl~~~~~KTa~ 44 (196)
||+.+|||+||+|++.||+.+++.. +++ ++ +++|++|+.+|||+
T Consensus 105 ~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~ 184 (304)
T 3lsn_A 105 FDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGLKLDQQALEYMHRHKTGA 184 (304)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHccCCCCCHHHHHHHHHhhhHH
Confidence 8999999999999999999999874 221 11 57899999999999
Q ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHH
Q 029266 45 LVSNSCKAVAYLSGQ-REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRA 123 (196)
Q Consensus 45 L~~~~~~~ga~lag~-~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~ 123 (196)
||++||++|++++|+ +++..+.+.+||.++|+||||+||++|++++++.+||+.++|+++||+|||+++
T Consensus 185 L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~---------- 254 (304)
T 3lsn_A 185 LIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALL---------- 254 (304)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHH----------
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHH----------
Confidence 999999999999999 888999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 124 FINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 124 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+++++++.++++.++|.+.|+.+|. .++.|..|++|+++|++
T Consensus 255 -----------------------~l~~a~~~a~~~~~~A~~~L~~l~~--------~~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 255 -----------------------GLAAAKEYALELRDQALHALRPFDA--------AAEPLRELARYIVERRS 296 (304)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHTTTSCG--------GGHHHHHHHHHHHC---
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHhCch--------hHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999985 35889999999999974
No 25
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=6.6e-38 Score=263.10 Aligned_cols=155 Identities=25% Similarity=0.349 Sum_probs=126.1
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCC------hhhh-----------------------------HHHHHHHHhcchHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKH------TEVI-----------------------------MECYMQKTYNKTAAL 45 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~------~~~~-----------------------------~~~yl~~~~~KTa~L 45 (196)
||+++||++||||++.||+.+++.+. .+++ +++|++|+.+|||+|
T Consensus 135 ~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L 214 (324)
T 3uca_A 135 FGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGEL 214 (324)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHH
Confidence 79999999999999999998876420 1111 678999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHH
Q 029266 46 VSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFI 125 (196)
Q Consensus 46 ~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~ 125 (196)
|++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.++|+++||+|||+++
T Consensus 215 ~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~------------ 282 (324)
T 3uca_A 215 IKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIF------------ 282 (324)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHH------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 126 NSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 126 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+++.+++.++++.++|.+.|+.+|.+. +.|..|++|+++|++
T Consensus 283 ---------------------al~~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 283 ---------------------GLEECKKKCVNITEECIEILSSIKGNT--------EPLKVLTMKLLERKF 324 (324)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHTSSSCC--------HHHHHHHHHHHHCCC
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHhccC
Confidence 788999999999999999999999754 789999999999975
No 26
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=5.1e-38 Score=270.18 Aligned_cols=189 Identities=14% Similarity=0.093 Sum_probs=164.9
Q ss_pred CchhHHHHHhhHHHHHH--HHHHHcC-CC-h---hh-------------------------------------------h
Q 029266 1 MGNKLAILAGDLLISRA--LVALASL-KH-T---EV-------------------------------------------I 30 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a--~~~l~~~-~~-~---~~-------------------------------------------~ 30 (196)
||+.+||++||+|+..+ |+++++. .+ + ++ .
T Consensus 145 ~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t 224 (390)
T 3dyh_A 145 PDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFT 224 (390)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCC
Confidence 79999999999999755 6776642 11 1 11 1
Q ss_pred HHHHHHHHhcchHHH-HHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCc
Q 029266 31 MECYMQKTYNKTAAL-VSNSCKAVAYLSGQREEV-ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIIT 108 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L-~~~~~~~ga~lag~~~~~-~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T 108 (196)
+++|++|+.+|||+| |++||++|++++|++++. .+.+.+||.++|+||||+|||+|++++++.+|| .|+||++||+|
T Consensus 225 ~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T 303 (390)
T 3dyh_A 225 LSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCS 303 (390)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCcc
Confidence 367999999999999 999999999999998764 788999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhhC-cHHHHHHhcCC--CChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHH--HHH
Q 029266 109 APILFAMEEF-PQLRAFINSSS--DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNA--RTA 183 (196)
Q Consensus 109 ~p~i~al~~~-~~~~~~~~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~--~~~ 183 (196)
||++++++.. |+.++.+.... .++++++++++++.++|+++++++..+++.++|.+.|+.+|.++ + ++.
T Consensus 304 ~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~------~~~~~~ 377 (390)
T 3dyh_A 304 WLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCS------PGFAAS 377 (390)
T ss_dssp HHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCc------hHHHHH
Confidence 9999999985 55555444433 47888999999999999999999999999999999999999876 4 889
Q ss_pred HHHHHHHHHcccC
Q 029266 184 LVHITQKIITRNK 196 (196)
Q Consensus 184 L~~l~~~~~~R~~ 196 (196)
|..|.+++++|+|
T Consensus 378 l~~l~~~i~~R~k 390 (390)
T 3dyh_A 378 VETLWGKTYKRQK 390 (390)
T ss_dssp HHHHHHTTTTCCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999986
No 27
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=5.5e-38 Score=261.56 Aligned_cols=155 Identities=29% Similarity=0.365 Sum_probs=126.6
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCCh-----hh-------------h---------------HHHHHHHHhcchHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHT-----EV-------------I---------------MECYMQKTYNKTAALVS 47 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~-----~~-------------~---------------~~~yl~~~~~KTa~L~~ 47 (196)
||+++|||+||||++.||+.+++.+.+ ++ + +++|++|+.+|||+||+
T Consensus 112 ~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~ 191 (302)
T 3p8l_A 112 FGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIE 191 (302)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHH
Confidence 799999999999999999999875321 11 1 57899999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHHhc
Q 029266 48 NSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINS 127 (196)
Q Consensus 48 ~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~~ 127 (196)
+||++|++++|++++..+.+.+||.++|+||||+||++|++++++.+||+.++|+++||+|||+++
T Consensus 192 ~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~-------------- 257 (302)
T 3p8l_A 192 FALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALL-------------- 257 (302)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHH--------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCC---CCCcchHHHHHHHHHHHHHHHcc
Q 029266 128 SSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPE---THDVDATNARTALVHITQKIITR 194 (196)
Q Consensus 128 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~---~~~~~~~~~~~~L~~l~~~~~~R 194 (196)
+++.+++.++++.++|.+.|+.+|+ +. .++.|..|++|+++|
T Consensus 258 -------------------~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~------~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 258 -------------------GIAGAKDALTHQLAEGSAVLEKIKANVPNF------SEEHLANLLTQLQLR 302 (302)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCSSC------CHHHHHHHHHHTSCC
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHhcccccCCh------hHHHHHHHHHHHhhC
Confidence 7899999999999999999999975 55 678999999999987
No 28
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=1.4e-37 Score=262.46 Aligned_cols=155 Identities=28% Similarity=0.353 Sum_probs=124.1
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcC--C-Ch----hhh----------------------------HHHHHHHHhcchHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASL--K-HT----EVI----------------------------MECYMQKTYNKTAAL 45 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~--~-~~----~~~----------------------------~~~yl~~~~~KTa~L 45 (196)
||+++|||+||||++.||+++++. + .+ +++ +++|++|+.+|||+|
T Consensus 146 ~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L 225 (335)
T 2h8o_A 146 FDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGAL 225 (335)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHH
Confidence 899999999999999999999986 1 11 111 568999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHH
Q 029266 46 VSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFI 125 (196)
Q Consensus 46 ~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~ 125 (196)
|++||++|++++|++++..+.+.+||.++|++|||+||++|++++++.+||+.|+|+++||+|||+++
T Consensus 226 ~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~------------ 293 (335)
T 2h8o_A 226 LRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALR------------ 293 (335)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHH------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 126 NSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 126 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+++++++.++++.++|.+.|+.+|. .++.|..|++++++|++
T Consensus 294 ---------------------~le~a~~~a~~~~~~A~~~L~~l~~--------~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 294 ---------------------GEAWAREKLQEQVAEASELLAPYGE--------KAAILIAAARFIAERKS 335 (335)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHTGGGGG--------GGHHHHHHHHHHHC---
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHhCch--------hHHHHHHHHHHHHhccC
Confidence 6889999999999999999999984 35889999999999974
No 29
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=5.6e-38 Score=267.44 Aligned_cols=181 Identities=15% Similarity=0.114 Sum_probs=158.8
Q ss_pred CchhHHHHHhhHHH---HHHHHHHHcC-CC-h--hhh----------------------------H-HHHHHHHhcchHH
Q 029266 1 MGNKLAILAGDLLI---SRALVALASL-KH-T--EVI----------------------------M-ECYMQKTYNKTAA 44 (196)
Q Consensus 1 ~G~~~Ail~GD~L~---~~a~~~l~~~-~~-~--~~~----------------------------~-~~yl~~~~~KTa~ 44 (196)
||+.+|||+||+|+ +.+|+++++. .. + +++ . ++|++|+.+|||+
T Consensus 134 ~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~ 213 (368)
T 2her_A 134 HGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSR 213 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchH
Confidence 89999999999999 8888877653 21 1 111 2 7899999999999
Q ss_pred H-HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhC-cH
Q 029266 45 L-VSNSCKAVAYLSGQREEV--ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-PQ 120 (196)
Q Consensus 45 L-~~~~~~~ga~lag~~~~~--~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~-~~ 120 (196)
| |++||++|++++|++++. .+.+.+||.++|+||||+||++|++ .+|| .|+||++||+|||++++++.. |+
T Consensus 214 Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~pvi~al~~a~~~ 288 (368)
T 2her_A 214 YTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLTWPLQKSFEIADEE 288 (368)
T ss_dssp HHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCCHHHHSSTTTCCHH
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCcccHHHHHHHHhCCHH
Confidence 9 999999999999998877 8899999999999999999999999 6799 999999999999999999974 55
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcc
Q 029266 121 LRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 194 (196)
Q Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R 194 (196)
.++.+......++ +++++++.++|+++++++.++++.++|.+.|+.+|.++ .|+.|..|++++.++
T Consensus 289 ~r~~L~~~~~~~~--~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 289 MKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLIHQISEL 354 (368)
T ss_dssp HHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHH
Confidence 5555554443333 89999999999999999999999999999999999987 999999999999874
No 30
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=3.2e-37 Score=265.40 Aligned_cols=188 Identities=19% Similarity=0.133 Sum_probs=148.2
Q ss_pred CchhH--HHHHhhHHHHHHHHHHHcC-C-C---hh-------------------h-------------------------
Q 029266 1 MGNKL--AILAGDLLISRALVALASL-K-H---TE-------------------V------------------------- 29 (196)
Q Consensus 1 ~G~~~--Ail~GD~L~~~a~~~l~~~-~-~---~~-------------------~------------------------- 29 (196)
||+.+ ||++||+|++.+|.++++. . . .+ +
T Consensus 144 ~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~ 223 (395)
T 2ihi_A 144 KDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQP 223 (395)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccc
Confidence 67777 9999999999999988753 1 1 11 1
Q ss_pred -------hHHHHHHHHhcchHHH-HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHchhhccccccccccccCCCcc
Q 029266 30 -------IMECYMQKTYNKTAAL-VSNSCKAVAYLSGQREEV--ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASL 99 (196)
Q Consensus 30 -------~~~~yl~~~~~KTa~L-~~~~~~~ga~lag~~~~~--~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~ 99 (196)
.+++|++|+.+|||+| |.+||++|++++|++++. .+.+.+||.++|+||||+||++|++++++.+|| .|
T Consensus 224 ~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g 302 (395)
T 2ihi_A 224 VIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VG 302 (395)
T ss_dssp CCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred cccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-Cc
Confidence 1467999999999999 999999999999998877 899999999999999999999999999999999 99
Q ss_pred hhhhcccCcHHHHHHhhhC-cHHHHHHhcCC--CChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 029266 100 TDLRNGIITAPILFAMEEF-PQLRAFINSSS--DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVD 176 (196)
Q Consensus 100 ~Dl~~gk~T~p~i~al~~~-~~~~~~~~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~ 176 (196)
+|+++||+|||++++++.. |+.++.+.... .+++.++++++++.++|+++++++.++++.++|.+.|+.+|+++
T Consensus 303 ~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~--- 379 (395)
T 2ihi_A 303 SDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEG--- 379 (395)
T ss_dssp CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCHH---
T ss_pred chhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCch---
Confidence 9999999999999999985 44443333221 26788999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHHHHHHccc
Q 029266 177 ATNARTALVHITQKIITRN 195 (196)
Q Consensus 177 ~~~~~~~L~~l~~~~~~R~ 195 (196)
.++.|..|++++++|.
T Consensus 380 ---~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 380 ---IEYVLKYLLEILFTGV 395 (395)
T ss_dssp ---HHHHHHHHHHC-----
T ss_pred ---HHHHHHHHHHHHhccC
Confidence 9999999999999984
No 31
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=6.3e-38 Score=261.44 Aligned_cols=158 Identities=30% Similarity=0.405 Sum_probs=143.1
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCC----Ch----hh-------------h---------------HHHHHHHHhcchHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLK----HT----EV-------------I---------------MECYMQKTYNKTAA 44 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~----~~----~~-------------~---------------~~~yl~~~~~KTa~ 44 (196)
||+++||++||+|++.||+.+++.. .+ ++ + +++|++|+.+|||+
T Consensus 105 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~ 184 (299)
T 1rqj_A 105 FGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGA 184 (299)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHH
Confidence 7999999999999999999999851 11 11 1 57899999999999
Q ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHH
Q 029266 45 LVSNSCKAVAYL-SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRA 123 (196)
Q Consensus 45 L~~~~~~~ga~l-ag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~ 123 (196)
||++||++|+++ +|++++..+.+.+||.++|++|||+||++|++++++.+||+.|+|+++||+|||+++
T Consensus 185 L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~---------- 254 (299)
T 1rqj_A 185 LIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALL---------- 254 (299)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHH----------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHH----------
Confidence 999999999999 998888999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 124 FINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 124 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+++++++.++++.++|.+.|+.+|.+.. .++.|..|++++++|++
T Consensus 255 -----------------------~l~~a~~~~~~~~~~A~~~L~~l~~~~~-----~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 255 -----------------------GLEQARKKARDLIDDARQSLKQLAEQSL-----DTSALEALADYIIQRNK 299 (299)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCHHHHHHHHHHHHCCC
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHhCCCCcH-----HHHHHHHHHHHHHhccC
Confidence 6678999999999999999999987321 57899999999999975
No 32
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=1.7e-36 Score=261.53 Aligned_cols=155 Identities=20% Similarity=0.175 Sum_probs=127.4
Q ss_pred HHHHHHHHhcchHHH-HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccC
Q 029266 31 MECYMQKTYNKTAAL-VSNSCKAVAYLSGQR--EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGII 107 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L-~~~~~~~ga~lag~~--~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~ 107 (196)
+++|++|+.+|||+| |.+||.+|++++|.+ +...+.+.+||.++|+||||+||++|++++++.+|| +|+||++||+
T Consensus 232 ~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~ 310 (395)
T 3mav_A 232 FGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKL 310 (395)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCTTTTTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcc-cccHHhcCCc
Confidence 467999999999999 899999999999874 456789999999999999999999999999999999 6999999999
Q ss_pred cHHHHHHhhhC-cH----HHHHHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHH
Q 029266 108 TAPILFAMEEF-PQ----LRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNART 182 (196)
Q Consensus 108 T~p~i~al~~~-~~----~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~ 182 (196)
|||++++++.. ++ +.+.+.+ .+++.++++++++.++|+.+++++.++++.++|...++.+|... .+.
T Consensus 311 T~p~i~al~~~~~~~r~~L~~~~~~--~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~------l~~ 382 (395)
T 3mav_A 311 TWPLIKTFELCSEPDKIKIVKNYGK--NNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEG------IEY 382 (395)
T ss_dssp CHHHHHHHHHSCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCCHH------HHH
T ss_pred hHHHHHHHHhCCHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCcHH------HHH
Confidence 99999999975 33 3444433 36677889999999999999999999999999999999999766 778
Q ss_pred HHHHHHHHHHcc
Q 029266 183 ALVHITQKIITR 194 (196)
Q Consensus 183 ~L~~l~~~~~~R 194 (196)
.|+.+++.+.+|
T Consensus 383 ll~~lle~i~~~ 394 (395)
T 3mav_A 383 VLKYLLEILFTG 394 (395)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHhcC
Confidence 888888887765
No 33
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=4.5e-37 Score=255.66 Aligned_cols=152 Identities=28% Similarity=0.340 Sum_probs=116.4
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCC--h----hhh------------------------------HHHHHHHHhcchHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKH--T----EVI------------------------------MECYMQKTYNKTAA 44 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~--~----~~~------------------------------~~~yl~~~~~KTa~ 44 (196)
||+++|||+||||++.||+.+++... + +++ +++|++|+.+|||+
T Consensus 102 ~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~ 181 (297)
T 3m0g_A 102 WDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGA 181 (297)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHH
Confidence 89999999999999999999987531 1 111 47899999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHH
Q 029266 45 LVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAF 124 (196)
Q Consensus 45 L~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~ 124 (196)
||++||++|++++|++++ .+.+||.++|+||||+||++|++++++.+||+.++|+++||+|||+++
T Consensus 182 L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~----------- 247 (297)
T 3m0g_A 182 LISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLL----------- 247 (297)
T ss_dssp HHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHH-----------
T ss_pred HHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHH-----------
Confidence 999999999999999876 899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 125 INSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 125 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+++.+++.++++.++|.+.|+.+|.+. +.|..|++|+++|++
T Consensus 248 ----------------------~l~~a~~~~~~~~~~A~~~L~~~~~~~--------~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 248 ----------------------GLAGAKSRAADLVAEAEAALAPYGEAA--------STLRACARYVIERDK 289 (297)
T ss_dssp ----------------------CSSHHHHHHHHHHHHHHHHTGGGGGGG--------HHHHHHHHHHTC---
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHhcc
Confidence 788899999999999999999998754 789999999999974
No 34
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.2e-36 Score=254.55 Aligned_cols=153 Identities=25% Similarity=0.325 Sum_probs=126.0
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCC-C--h-h----h-------------h----------------HHHHHHHHhcchH
Q 029266 1 MGNKLAILAGDLLISRALVALASLK-H--T-E----V-------------I----------------MECYMQKTYNKTA 43 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~-~--~-~----~-------------~----------------~~~yl~~~~~KTa 43 (196)
||+.+|||+||+|++.||+.+++.. + + + + + +++|++|+.+|||
T Consensus 111 ~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg 190 (313)
T 3lom_A 111 FDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTG 190 (313)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcH
Confidence 8999999999999999999998651 1 1 0 1 1 5789999999999
Q ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHH
Q 029266 44 ALVSNSCKAVAYLSG--QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQL 121 (196)
Q Consensus 44 ~L~~~~~~~ga~lag--~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~ 121 (196)
+||++||++ |+++| ++++..+.+.+||.++|+||||+||++|++++++.+||+.|+|+++||+|||+++
T Consensus 191 ~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~-------- 261 (313)
T 3lom_A 191 KLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLF-------- 261 (313)
T ss_dssp HHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHS--------
T ss_pred HHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHH--------
Confidence 999999999 99999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHccc
Q 029266 122 RAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 195 (196)
Q Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 195 (196)
+++++++.++++.++|.+.|+.+|++ ++.|..|++|+++|+
T Consensus 262 -------------------------~l~~a~~~a~~~~~~A~~~L~~l~~~--------~~~L~~la~~~~~R~ 302 (313)
T 3lom_A 262 -------------------------NKQQLEEEIAVHYQIAMDSLRLFGSK--------AAALIELTKQLQNRS 302 (313)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHTTTTTGGG--------GHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHhCCcc--------HHHHHHHHHHHHhcc
Confidence 78999999999999999999999864 378999999999986
No 35
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.1e-36 Score=254.17 Aligned_cols=157 Identities=25% Similarity=0.318 Sum_probs=131.2
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCCh-----hhh----------------------------HHHHHHHHhcchHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHT-----EVI----------------------------MECYMQKTYNKTAALVS 47 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~-----~~~----------------------------~~~yl~~~~~KTa~L~~ 47 (196)
||+++|||+||+|++.||+.+++.+.+ +++ +++|+.|+.+|||+||+
T Consensus 111 ~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~ 190 (309)
T 3pde_A 111 FGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLH 190 (309)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHH
Confidence 799999999999999999999876421 111 57899999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHHhc
Q 029266 48 NSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINS 127 (196)
Q Consensus 48 ~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~~ 127 (196)
+||++|++++|++++..+.+.+||.++|+||||+||++|++++++.+||+.++|+++||+|||+++
T Consensus 191 ~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~-------------- 256 (309)
T 3pde_A 191 YAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKL-------------- 256 (309)
T ss_dssp HHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHH--------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHH--------------
Confidence 999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 128 SSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 128 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+++.+.+..+++.++|.+.|+.+|.+-. ... |+.|++|+++|++
T Consensus 257 -------------------al~~a~~~~~~~~~~a~~~l~~~~~~~~-----~~~-L~~l~~~~~~r~~ 300 (309)
T 3pde_A 257 -------------------GLIGANQALIDTIHSGQAALQGLPTSTQ-----RDD-LAAFFSYFDTERV 300 (309)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHTSCCCHH-----HHH-HHGGGGGSCTTTT
T ss_pred -------------------HHHHhHHHHHHHHHHHHHHHHHhhhccC-----HHH-HHHHHHHHHHhhc
Confidence 7888999999999999999999876531 233 9999999999974
No 36
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-36 Score=249.62 Aligned_cols=149 Identities=25% Similarity=0.283 Sum_probs=127.5
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChhhh----------------------------HHHHHHHHhcchHHHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTEVI----------------------------MECYMQKTYNKTAALVSNSCKA 52 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~----------------------------~~~yl~~~~~KTa~L~~~~~~~ 52 (196)
||+++||++||||++.||+.+++.++.+++ +++|++|+.+|||+||++||++
T Consensus 107 ~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ 186 (284)
T 2ftz_A 107 YGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSA 186 (284)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHH
Confidence 799999999999999999999987543222 4689999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHHhcCCCCh
Q 029266 53 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNP 132 (196)
Q Consensus 53 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~ 132 (196)
|++++|++++ .+.+||.++|++|||+||++|++++++.+||+.++|++ |+|||+++
T Consensus 187 ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~------------------- 242 (284)
T 2ftz_A 187 PFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXV------------------- 242 (284)
T ss_dssp HHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHH-------------------
T ss_pred HHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHH-------------------
Confidence 9999998876 89999999999999999999999999999999999999 99999999
Q ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHH-HHHHHHHHHcc
Q 029266 133 ANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTA-LVHITQKIITR 194 (196)
Q Consensus 133 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~-L~~l~~~~~~R 194 (196)
+++++++.++++.++|.+.|+.+|. . .++. |..|++++++|
T Consensus 243 --------------~l~~a~~~a~~~~~~A~~~L~~l~~-~------~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 243 --------------GIQXAREMADXYYEEVLXGIESEGL-F------RTLFLLXELXQMVEER 284 (284)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHTTC-H------HHHHHHHHHHHHHHTC
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHhCCc-h------hHHHHHHHHHHHHHcC
Confidence 6888999999999999999999987 5 7888 99999999987
No 37
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=6e-35 Score=242.64 Aligned_cols=157 Identities=29% Similarity=0.454 Sum_probs=134.9
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChhhh--------------------------HHHHHHHHhcchHHHHHHHHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTEVI--------------------------MECYMQKTYNKTAALVSNSCKAVA 54 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~--------------------------~~~yl~~~~~KTa~L~~~~~~~ga 54 (196)
||+++|||+||||++.||+.+++.+. +++ +++|++|+.+|||+||++||++|+
T Consensus 101 ~G~~~AIlaGD~Ll~~a~~ll~~~~~-~~~~~~~~~~~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga 179 (295)
T 3ipi_A 101 FGPSGALLCGDYLIAKSIAFISPYGE-KVIQDFGKAGMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGA 179 (295)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHGGGCH-HHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHchH-HHHHHHHHHHHHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 89999999999999999999987642 211 478999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHHhcCCCChhh
Q 029266 55 YLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPAN 134 (196)
Q Consensus 55 ~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~~~ 134 (196)
+++|++++..+.+.+||.++|+||||+||++|+++++. || |+.+||+|||++++++..+
T Consensus 180 ~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~gk~Tlp~l~al~~~~--------------- 238 (295)
T 3ipi_A 180 YTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKFTSETLPHIYMKSTSK--------------- 238 (295)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHHTTTSCH---------------
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----CcccCcccHHHHHHHhcCc---------------
Confidence 99999999999999999999999999999999999763 54 6789999999999875432
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHccc
Q 029266 135 VDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 195 (196)
Q Consensus 135 ~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 195 (196)
.++++++++.++++.++|++.|+.+|+++ .++.|..|+++++.|.
T Consensus 239 ----------~~~le~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~~~ 283 (295)
T 3ipi_A 239 ----------EEALKKSIDCVKLHVAAAKETLETFRECP------ARDKLFQITDYITVDM 283 (295)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHHHHHHHHTTGGG
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHHHhC
Confidence 13799999999999999999999999887 8999999999999874
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=2.1e-34 Score=240.86 Aligned_cols=155 Identities=24% Similarity=0.313 Sum_probs=125.0
Q ss_pred CchhHHHHHhhHHHHHHHHHHHc--CCCh---hhh----------------------------HHHHHHHHhcchHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALAS--LKHT---EVI----------------------------MECYMQKTYNKTAALVS 47 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~--~~~~---~~~----------------------------~~~yl~~~~~KTa~L~~ 47 (196)
||+.+||++||+|++.||+.+++ .+.+ +++ +++|++|+.+|||+||+
T Consensus 115 ~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~ 194 (311)
T 3llw_A 115 YDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLIS 194 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHH
Confidence 89999999999999999999987 3221 010 57899999999999999
Q ss_pred HHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHHh
Q 029266 48 NSCKAVAYLSGQREEVA-TLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFIN 126 (196)
Q Consensus 48 ~~~~~ga~lag~~~~~~-~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~ 126 (196)
+||++|++++|++++.. +.+.+||.++|+||||+||++|++++++.+||+.++ ++||+|||+++
T Consensus 195 ~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~--~~gK~T~p~l~------------- 259 (311)
T 3llw_A 195 ASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL--DSAKNSFVNLL------------- 259 (311)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCSCHHHHH-------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc--ccCcchHHHHH-------------
Confidence 99999999999998888 899999999999999999999999999999999776 99999999999
Q ss_pred cCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHH-HHHHHHHHHHHHccc
Q 029266 127 SSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNA-RTALVHITQKIITRN 195 (196)
Q Consensus 127 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~-~~~L~~l~~~~~~R~ 195 (196)
+++.+....+++.++|.+.|+.++.-. .. .+.|+.|++|+++|.
T Consensus 260 --------------------~l~~a~~~~~~~~~~a~~~l~~~~~~~-----~~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 260 --------------------GLERANNYAQTLKTEVLNDLDALKPAY-----PLLQENLNALLNTLFKGE 304 (311)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHTTSTTTC-----HHHHHHHHHHHHHHHC--
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHhhhccccC-----ccHHHHHHHHHHHHHhcc
Confidence 788899999999999999999965411 03 588999999999996
No 39
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=2e-33 Score=232.92 Aligned_cols=151 Identities=22% Similarity=0.291 Sum_probs=120.1
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCC-hh----hh----------------------------HHHHHHHHhcchHHHHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKH-TE----VI----------------------------MECYMQKTYNKTAALVS 47 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~-~~----~~----------------------------~~~yl~~~~~KTa~L~~ 47 (196)
||+.+||++||+|++.||+.+++... ++ ++ +++|+.|+.+|||+||+
T Consensus 101 ~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~ 180 (291)
T 3npk_A 101 YDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIA 180 (291)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHH
Confidence 89999999999999999999987531 10 10 57899999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHHhc
Q 029266 48 NSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINS 127 (196)
Q Consensus 48 ~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~~ 127 (196)
+||++|++++|++++..+.+.+||.++|+||||+||++|++++++.+||+.+.| +||+|||+++
T Consensus 181 ~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~p~l~-------------- 244 (291)
T 3npk_A 181 AALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSFVNLL-------------- 244 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCHHHHH--------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchHHHHH--------------
Confidence 999999999999999899999999999999999999999999999999998776 9999999999
Q ss_pred CCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHc
Q 029266 128 SSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIIT 193 (196)
Q Consensus 128 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~ 193 (196)
+++.+....+++.++|.+.|+.++.+ ..+.|++|+++.++
T Consensus 245 -------------------~l~~a~~~~~~~~~~a~~~l~~~~~~-------~~~~l~~la~~~~~ 284 (291)
T 3npk_A 245 -------------------GLEQAIKTKENLLNECEQDLEKLNEK-------LAQMIQNLIIQYLE 284 (291)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHTSCHH-------HHHHHHHHHHHHC-
T ss_pred -------------------HHHHhHHHHHHHHHHHHHHHHHhchh-------HHHHHHHHHHHHHh
Confidence 78888999999999999999999743 25789999988654
No 40
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=1.6e-33 Score=240.78 Aligned_cols=182 Identities=15% Similarity=0.089 Sum_probs=143.9
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCCh-------hhh-----------------------------HHHHHHHHhcchHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHT-------EVI-----------------------------MECYMQKTYNKTAA 44 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~-------~~~-----------------------------~~~yl~~~~~KTa~ 44 (196)
||+++||++||+|++.||.++.+..+. +++ +++|++|+.+|||.
T Consensus 134 ~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~ 213 (368)
T 2q58_A 134 HGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSR 213 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhcc
Confidence 899999999999999999998765321 111 57899999999999
Q ss_pred H-HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhC-cH
Q 029266 45 L-VSNSCKAVAYLSG--QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-PQ 120 (196)
Q Consensus 45 L-~~~~~~~ga~lag--~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~-~~ 120 (196)
| |.+|+.+|++++| ++++..+.+.+||.++|+||||+||++|+++ ||+.|+||++||+|||++++++.. ++
T Consensus 214 l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p~i~al~~~~~~ 288 (368)
T 2q58_A 214 YTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADEE 288 (368)
T ss_dssp HHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHHHHSSTTTCCHH
T ss_pred ccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHHHHHHHHhCCHH
Confidence 9 7999999999998 4666778899999999999999999999986 899999999999999999999986 45
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHH----HHHHHHHHHHccc
Q 029266 121 LRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNART----ALVHITQKIITRN 195 (196)
Q Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~----~L~~l~~~~~~R~ 195 (196)
.+..+.+..... ...+++++...+..+.+.+..+++.+++.+.++.+|... .++ .|..|.+++++|+
T Consensus 289 ~r~~L~~~~~~~--~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~------~k~~l~~ll~kI~~~~~~rk 359 (368)
T 2q58_A 289 MKLKISENYGKN--SSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLIHQISELITNSR 359 (368)
T ss_dssp HHHHHHHHTTTC--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchh------HHHHHHHHHHHHHHHHHHhh
Confidence 555554433221 234555666666677777788888899999999998765 554 4555666666664
No 41
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=99.97 E-value=2.4e-31 Score=221.05 Aligned_cols=142 Identities=30% Similarity=0.425 Sum_probs=126.4
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCC-----Ch---h-------------hh------------------HHHHHHHHhcc
Q 029266 1 MGNKLAILAGDLLISRALVALASLK-----HT---E-------------VI------------------MECYMQKTYNK 41 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~-----~~---~-------------~~------------------~~~yl~~~~~K 41 (196)
||+++||++||+|++.||+.+++.. .. + ++ +++|+.|+.+|
T Consensus 113 ~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~K 192 (293)
T 2j1p_A 113 YGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHK 192 (293)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcc
Confidence 7999999999999999999988642 10 0 01 45799999999
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHH
Q 029266 42 TAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQL 121 (196)
Q Consensus 42 Ta~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~ 121 (196)
||+||++||++|++++|++++..+.+.+||.++|++|||+||++|+++++ |.|+|+++
T Consensus 193 Ta~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~--------------K~T~p~l~-------- 250 (293)
T 2j1p_A 193 TAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS--------------KLTYPKLM-------- 250 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHH--------
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--------------cccHHHHH--------
Confidence 99999999999999999999999999999999999999999999999864 89999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266 122 RAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196 (196)
Q Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 196 (196)
+++++++.++++.++|.+.|+.+| +. .++.|..|++++++|++
T Consensus 251 -------------------------gle~a~~~a~~~~~~A~~~L~~l~-~~------~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 251 -------------------------GLEKSREFAEKLNTEARDQLLGFD-SD------KVAPLLALANYIANRQN 293 (293)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHTTTSC-TT------TTHHHHHHHHHHHHCCC
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHhCC-cH------HHHHHHHHHHHHHhhcC
Confidence 889999999999999999999998 33 56889999999999975
No 42
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=99.97 E-value=4e-32 Score=225.13 Aligned_cols=150 Identities=20% Similarity=0.274 Sum_probs=129.8
Q ss_pred CchhHHHHHhhHHHHHHHHHH-HcCCChhhh--------------------HHHHHHHHhcchHHHHHHHHHHHHHHcCC
Q 029266 1 MGNKLAILAGDLLISRALVAL-ASLKHTEVI--------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQ 59 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l-~~~~~~~~~--------------------~~~yl~~~~~KTa~L~~~~~~~ga~lag~ 59 (196)
||+++|||+||||++.||+.+ ++.++ +++ +++|++++.+|||+||++||++|++++ +
T Consensus 108 ~G~~~AIlaGD~Ll~~a~~~l~~~~~~-~~~~~~~~~~~~~~~GQ~~dl~~~~~y~~~i~~KTa~L~~~a~~~ga~la-~ 185 (289)
T 2azj_A 108 YGNRKVIFITNYLIPTALRIIQTSYGD-DALNTSIELWKDTSVGALRDMYDNSDYIRTIELKTGSLFKLSTVLSAYAS-K 185 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHTHHHHHHHHHHHHHHT-T
T ss_pred cChHHHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcchHHHHHHHHHHHHHHc-C
Confidence 799999999999999999999 77643 222 357999999999999999999999999 8
Q ss_pred CHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHHhcCCCChhhHHHHH
Q 029266 60 REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVIL 139 (196)
Q Consensus 60 ~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~~~~~~i~ 139 (196)
+++..+.+.+||.++|+||||+||++|++++ ||+ |+++||+|+|+++ . ..+
T Consensus 186 ~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~gk~Tlp~l~-~-~~g-------------------- 236 (289)
T 2azj_A 186 HYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGSAKQLFKYY-R-EGK-------------------- 236 (289)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTTGGGGHHHH-T-TTC--------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcCcccHHHHH-H-cCC--------------------
Confidence 8888999999999999999999999999996 454 8999999999998 2 111
Q ss_pred HHHHhccHHHHH-HHHHHHHHHHHHHHhccCCC-CCCcchHHHHHHHHHHHHHHHccc
Q 029266 140 EYLGKSHGIQRT-TELALKHASLAAAAIDSLPE-THDVDATNARTALVHITQKIITRN 195 (196)
Q Consensus 140 ~~~~~~g~~~~~-~~~~~~~~~~a~~~l~~lp~-~~~~~~~~~~~~L~~l~~~~~~R~ 195 (196)
.+.+ +..++++.++|.+.|+.+|. ++ .++.|..+++++++|.
T Consensus 237 --------~~~a~~~~a~~~~~~A~~~L~~lp~~~~------~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 237 --------LEEYVRSVYLEYKQKYDELISNIPFQSK------YLSEIRSLPEFLANGL 280 (289)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHTSCCCGG------GHHHHHTHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhCCCCcH------HHHHHHHHHHHHHhcc
Confidence 1112 45899999999999999998 55 7899999999999985
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=99.91 E-value=4.1e-25 Score=182.10 Aligned_cols=102 Identities=25% Similarity=0.308 Sum_probs=81.5
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCChhhh-----------HHHHHH-------HHhcchHHHHHHHHHHHHHHcCCCHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHTEVI-----------MECYMQ-------KTYNKTAALVSNSCKAVAYLSGQREE 62 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~-----------~~~yl~-------~~~~KTa~L~~~~~~~ga~lag~~~~ 62 (196)
||+++|||+||||++.||+.+++.++ +++ .-++++ |+.+|||+||++||++|++++|++ +
T Consensus 107 ~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~~~GQ~lDl~~~~~~~i~~KTg~Lf~~a~~lGa~lag~~-~ 184 (285)
T 4fp4_A 107 YGDGRAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQRLSVGQALDLEGERDKAAEFKTAPLIEAALVMPLVILGRR-E 184 (285)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHHHTCG-G
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhHHHHHhccccchhhcCcHHHHHHHHHHHHHHcCCh-H
Confidence 79999999999999999999998764 332 122222 899999999999999999999998 7
Q ss_pred HHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcc
Q 029266 63 VATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNG 105 (196)
Q Consensus 63 ~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~g 105 (196)
..+.+++||.++|+||||+||++|++++++ +||+.++||+++
T Consensus 185 ~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 185 LIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp GHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 889999999999999999999999999865 688999999988
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=99.87 E-value=4.2e-22 Score=163.92 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=76.6
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCCh-------h---h-------------h---------------HHHHHHHHhcch
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHT-------E---V-------------I---------------MECYMQKTYNKT 42 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~-------~---~-------------~---------------~~~yl~~~~~KT 42 (196)
||+++|||+||||++.||+.+++..++ . + + +++|+.|+.+||
T Consensus 100 ~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KT 179 (274)
T 3kra_B 100 YGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKY 179 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCTTSSCHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999976542 1 0 1 578999999999
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhcc
Q 029266 43 AALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84 (196)
Q Consensus 43 a~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ 84 (196)
|+||++||++|++++|++++..+.+++||.++|++|||+||.
T Consensus 180 a~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 180 GEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999996
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=99.86 E-value=4.5e-21 Score=157.72 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=74.7
Q ss_pred CchhHHHHHhhHHHHHHHHHHHcCCCh------h---h-------------h-------------HHHHHH-HHhcchHH
Q 029266 1 MGNKLAILAGDLLISRALVALASLKHT------E---V-------------I-------------MECYMQ-KTYNKTAA 44 (196)
Q Consensus 1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~------~---~-------------~-------------~~~yl~-~~~~KTa~ 44 (196)
||+++|||+||||++.||+.+++..++ . + + .++|++ |+.+|||+
T Consensus 103 ~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~ 182 (273)
T 3qkc_B 103 FDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQLNDLELIEYVCKKKEGT 182 (273)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCCSSCCHHHHHHHHHHTHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHH
Confidence 899999999999999999999875431 1 0 1 246776 55999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccc
Q 029266 45 LVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDIL 85 (196)
Q Consensus 45 L~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~l 85 (196)
||++||++|++++|++++..+.+++||.++|++|||+||++
T Consensus 183 L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 183 LHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999996
No 46
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=93.68 E-value=0.22 Score=41.61 Aligned_cols=119 Identities=16% Similarity=0.132 Sum_probs=69.6
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHH
Q 029266 31 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAP 110 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p 110 (196)
++++..=+.+-.|+...+.+.+-..-...++ ........+.++|.|+|+.|=+.|+ +.|+..|++-+|
T Consensus 138 ~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~-~~~~~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YlP 205 (343)
T 3vj8_A 138 EQEWDKYCHYVAGLVGIGLSRLFSASEFEDP-LVGEDTERANSMGLFLQKTNIIRDY-----------LEDQQGGREFWP 205 (343)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTSSCH-HHHHCHHHHHHHHHHHHHHHHHHTH-----------HHHHHTTCCCSC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHhCCCCCccc-hhhhHHHHHHHHHHHHHHHHHHHHh-----------HHHHhCCCeeCC
Confidence 4444444555555555666665443222223 2334567899999999999877666 457788999999
Q ss_pred HHHHhhhCcHHHHHHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCC
Q 029266 111 ILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPET 172 (196)
Q Consensus 111 ~i~al~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~ 172 (196)
.=..-+..-...+++. .+.-..+.. .+......++.+.++|...+..+|..
T Consensus 206 ~e~l~~~g~~~~dl~~-----~~~~~~~~~------~l~~l~~~A~~~~~~a~~~~~~L~~~ 256 (343)
T 3vj8_A 206 QEVWSRYVKKLGDFAK-----PENIDLAVQ------CLNELITNALHHIPDVITYLSRLRNQ 256 (343)
T ss_dssp HHHHTTTCSSGGGGGS-----GGGHHHHHH------HHHHHHHHHHTTHHHHHHHHHTCCCH
T ss_pred HHHHHHcCCCHHHHhc-----ccCCHHHHH------HHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8433222111111111 111222332 45566677888888888888888764
No 47
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=93.11 E-value=0.63 Score=37.80 Aligned_cols=84 Identities=14% Similarity=0.005 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHHhcCCCChhhHHHHHHHHHhcc
Q 029266 67 AFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSH 146 (196)
Q Consensus 67 l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g 146 (196)
...++.++|+|+|+.|=+.|+ +.|+..|++-+|.-..-+..-...++.... .++ .++.
T Consensus 154 ~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YlP~~~l~~~gv~~~dl~~~~-~~~----~~~~------ 211 (294)
T 4hd1_A 154 RARLSDATCTALQVANHMQDI-----------DRDLALGRIYVPRADLEQFGATLDDIRARR-ATD----GVRR------ 211 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH-----------HHHHHTTCBCSCHHHHHTTTCCHHHHHTTC-CCH----HHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----------hhhhccCceeCCHHHHHHcCCCHHHHhcCC-CCH----HHHH------
Confidence 456789999999999877776 357788999999855443332223333222 222 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC
Q 029266 147 GIQRTTELALKHASLAAAAIDSLPET 172 (196)
Q Consensus 147 ~~~~~~~~~~~~~~~a~~~l~~lp~~ 172 (196)
.+......++.+.++|...+..+|..
T Consensus 212 ~~~~~~~~A~~~~~~a~~~~~~lp~~ 237 (294)
T 4hd1_A 212 CIALEVDRAQALFDEGRRLESLVPPR 237 (294)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 23445566778888888888888754
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=92.98 E-value=1.6 Score=35.20 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=69.0
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHH
Q 029266 31 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAP 110 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p 110 (196)
++++..=+++-.|+...+.+.+- +..+. ......+.++|.|+|+.|=+.|+ +.|...|++-+|
T Consensus 129 ~~dL~~Yc~~vAg~VG~l~~~l~---g~~~~---~~~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YLP 191 (293)
T 3acx_A 129 DAELFGYCYGVAGTVGEVLTPIL---SDHET---HQTYDVARRLGESLQLINILRDV-----------GEDFENERIYFS 191 (293)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH---CSSCC---HHHHHHHHHHHHHHHHHHHHHCH-----------HHHHHTTCCCSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHh---CCCCc---HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhCCcEEeC
Confidence 34444334444444445444432 22231 23667899999999999866666 457788999999
Q ss_pred HHHHhhhCcHHHHHHhcCCCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 029266 111 ILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 173 (196)
Q Consensus 111 ~i~al~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~ 173 (196)
.=..-+..-...+++... .++ .+++ .+......++.+.++|...+..+|...
T Consensus 192 ~d~l~~~gv~~e~l~~~~-~~~----~~~~------~~~~l~~~A~~~~~~a~~~~~~lp~~~ 243 (293)
T 3acx_A 192 KQRLKQYEVDIAEVYQNG-VNN----HYID------LWEYYAAIAEKDFRDVMDQIKVFSIEA 243 (293)
T ss_dssp HHHHHHHTCCHHHHHHHC-CCH----HHHH------HHHHHHHHHHHHHHHHHHTGGGSCTTH
T ss_pred HHHHHHcCCCHHHhcccC-CCH----HHHH------HHHHHHHHHHHHHHHHHHhHHhCCHHH
Confidence 854433322222333321 122 1222 455566778899999999999998754
No 49
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=69.92 E-value=38 Score=26.58 Aligned_cols=60 Identities=7% Similarity=0.057 Sum_probs=42.8
Q ss_pred HHHHHHHHhcchHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccc
Q 029266 31 MECYMQKTYNKTAALVSNS-CKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTS 91 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L~~~~-~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~ 91 (196)
+++|+.+-..-+|..+-.. +..+. --..+++..+.+.++-+..+...-+.||+..+-.+.
T Consensus 154 ~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~ 214 (300)
T 1di1_A 154 LGHYLEYREKDVGKALLSALMRFSM-GLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEE 214 (300)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8999998777766553332 22222 123456666788999999999999999999997654
No 50
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=67.70 E-value=32 Score=28.18 Aligned_cols=50 Identities=26% Similarity=0.222 Sum_probs=27.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHH
Q 029266 53 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 114 (196)
Q Consensus 53 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~a 114 (196)
++.+.|.+.+....+...-+.+=.++-|-||+.|= +|++.|++|+-..|-
T Consensus 58 ~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 107 (334)
T 3rmg_A 58 VARLYGAVTPATLHAAVSLELLHTASLVHDDVVDE------------STERRGQLSVNAIFN 107 (334)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhcC
Confidence 33333444445555666678888899999999553 457788888877663
No 51
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=66.00 E-value=9.4 Score=27.47 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=30.1
Q ss_pred HHHhhHHHHHHHHHHHcCCChhh---hHHHHHHHHhcchHHH
Q 029266 7 ILAGDLLISRALVALASLKHTEV---IMECYMQKTYNKTAAL 45 (196)
Q Consensus 7 il~GD~L~~~a~~~l~~~~~~~~---~~~~yl~~~~~KTa~L 45 (196)
||+|||+-+.-+.+++..+.... +-+..-++.+.|+..+
T Consensus 73 VLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl~ 114 (147)
T 3aqb_A 73 VLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRA 114 (147)
T ss_dssp HHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 49999999999999997776554 3455667788887644
No 52
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=64.71 E-value=51 Score=26.15 Aligned_cols=60 Identities=8% Similarity=0.037 Sum_probs=43.0
Q ss_pred HHHHHHHHhcchHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccc
Q 029266 31 MECYMQKTYNKTAALVSNS-CKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTS 91 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L~~~~-~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~ 91 (196)
+++|+.+-..-+|..+-.. +..+. --..+++..+...++-+..+...-+.||+..+..+.
T Consensus 168 ~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE~ 228 (320)
T 3bny_A 168 LGGYLEYRERDVGKELLAALMRFSM-GLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKEL 228 (320)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 8999988877777654332 23322 122466666788899999999999999999997653
No 53
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=63.29 E-value=29 Score=28.55 Aligned_cols=50 Identities=28% Similarity=0.215 Sum_probs=29.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 52 AVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 52 ~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
+++.+.|.+.+....+...-+.+=.++-|-||+.|= +|+++|++|+-..|
T Consensus 63 ~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 112 (341)
T 3mzv_A 63 AAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDE------------SRQRRGRPTANLLW 112 (341)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhc
Confidence 344444544444555666677788899999999553 35677777765554
No 54
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=62.45 E-value=43 Score=27.75 Aligned_cols=59 Identities=8% Similarity=-0.056 Sum_probs=36.5
Q ss_pred HHHHHHHHhcchHHHHHHH-HHHHHHHcCCCHHHH--HHHHHHHHHHHHHHchhhcccccccc
Q 029266 31 MECYMQKTYNKTAALVSNS-CKAVAYLSGQREEVA--TLAFEYGKNLGLAYQLIDDILDFTGT 90 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L~~~~-~~~ga~lag~~~~~~--~~l~~~g~~lGiafQi~DD~ld~~~~ 90 (196)
+++|+.+-..-+|..+-.. +..+. --..+++.. ..+.++-+..+...-+.||+..+..+
T Consensus 208 ~eEYl~~r~~s~g~~~~~~l~~~~~-g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S~~kE 269 (382)
T 3kb9_A 208 VEEYLELRRLTFAHWIWTDLLEPSS-GCELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKE 269 (382)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCHHHHHHHHHHHc-CCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888665555443222 22221 112244332 25677788899999999999998754
No 55
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=60.72 E-value=29 Score=28.75 Aligned_cols=52 Identities=19% Similarity=0.020 Sum_probs=33.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 50 CKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 50 ~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
+.+++.+.|.+.+....+...-+.+=.++-|-||+.|= +|++.|++|+-..|
T Consensus 62 ~ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 113 (352)
T 3nf2_A 62 AVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG------------DEQRRHRDTVWKVH 113 (352)
T ss_dssp HHHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC------------CCCCCCCccHHHhc
Confidence 33444455555555556666677777889999999663 24566777766555
No 56
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=60.46 E-value=64 Score=25.88 Aligned_cols=45 Identities=31% Similarity=0.322 Sum_probs=30.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 57 SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 57 ag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
.|.+++....+...-+.+=.++-|.||+.|= +|++.|++|+-..|
T Consensus 40 ~~~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 84 (301)
T 2q80_A 40 LKVPEDKLQIIIEVTEMLHNASLLIDDIEDN------------SKLRRGFPVAHSIY 84 (301)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHccccCC------------CCCCCCCcchhhcc
Confidence 3455555556666777777888999999653 34667777766554
No 57
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=57.28 E-value=52 Score=26.42 Aligned_cols=42 Identities=26% Similarity=0.269 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 60 REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 60 ~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
+.+....+...-+.+=.+.-|-||+.|= +|+++|++|+-..+
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD~------------s~~RRG~Pt~h~~~ 107 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMDQ------------HDQRRGIKTPRAMY 107 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSBSSSSBCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCCC------------CCCCCCCCcHHHhc
Confidence 3344555666677788899999999542 35677778776665
No 58
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=54.12 E-value=42 Score=28.56 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=41.5
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHcC--CCHHHHH--HHHHHHHHHHHHHchhhccccccccccccCCCcchhhhccc
Q 029266 31 MECYMQKTYNKTAALVSNSCKAVAYLSG--QREEVAT--LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGI 106 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L~~~~~~~ga~lag--~~~~~~~--~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk 106 (196)
+++|+.+- ..||...-..+ .....| ..++..+ .+.++-+..+...-+.||+..|..+... .|.
T Consensus 286 leEYl~~R-~~sg~~p~~~l--~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~----------gg~ 352 (433)
T 3v1v_A 286 VWEYLAMR-QFNNFRPCPTI--TDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYSYTKELNS----------PGR 352 (433)
T ss_dssp HHHHHHHH-HHSSSTTTGGG--HHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHSHHHHTTS----------SSC
T ss_pred HHHHHHHH-HHHhHHHHHHH--HHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHHHHHHHhc----------CCC
Confidence 67888863 34543311111 112122 2344332 5677888889999999999999764321 133
Q ss_pred -CcHHHHHHh
Q 029266 107 -ITAPILFAM 115 (196)
Q Consensus 107 -~T~p~i~al 115 (196)
.|.+.++..
T Consensus 353 ~~N~V~~~mk 362 (433)
T 3v1v_A 353 HLNLPVVIAE 362 (433)
T ss_dssp CCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 377777643
No 59
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=47.86 E-value=1.1e+02 Score=26.92 Aligned_cols=58 Identities=7% Similarity=0.088 Sum_probs=34.4
Q ss_pred HHHHHHHHhcchHHHH-HHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHchhhcccccccc
Q 029266 31 MECYMQKTYNKTAALV-SNSCKAVAYLSG-QREEVATLA---FEYGKNLGLAYQLIDDILDFTGT 90 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L~-~~~~~~ga~lag-~~~~~~~~l---~~~g~~lGiafQi~DD~ld~~~~ 90 (196)
+++|+....--+|..+ ...+.++. +. .+++..+.+ .++-+..++..-+.||+..+-.+
T Consensus 395 ~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E 457 (555)
T 3n0f_A 395 FDDYFGNAWKSSSGPLQLIFAYFAV--VQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAE 457 (555)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHH--CSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHhc--CCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhh
Confidence 6778777655555432 22222221 22 345544432 46788889999999999998654
No 60
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=47.75 E-value=1e+02 Score=24.47 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=30.8
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHchhhcc--ccccccccccCCCcchhhhcccCcHHHHH
Q 029266 56 LSGQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 56 lag~~~~~~~~l~~~g~~lGiafQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
+.|.+++....+...-+.+=.+.-|-||+ .|= +|+++|++|+-..|
T Consensus 60 ~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~------------s~~RRG~pt~h~~~ 107 (284)
T 2ftz_A 60 DLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDN------------ADFRRGXPSCHRTY 107 (284)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC------------CSEETTEECHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC------------CCCCCCCccHHhhc
Confidence 33555555455666667777788899998 763 34677777776665
No 61
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=47.68 E-value=57 Score=26.44 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=30.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 52 AVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 52 ~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
+++.+.|.+.+....+...-+.+=.++-|.||+.|= +|++.|++|+-..|
T Consensus 54 ~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 103 (325)
T 3aqb_B 54 LSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDN------------SDMRRGNTSVHIAF 103 (325)
T ss_dssp HHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHT
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCCCccccc
Confidence 344444444344445666666777788999999662 24566666665543
No 62
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=47.53 E-value=80 Score=25.19 Aligned_cols=59 Identities=8% Similarity=-0.018 Sum_probs=34.5
Q ss_pred HHHHHHHHhcchHHHHHHH-HHHHHHHcCCCHHHH--HHHHHHHHHHHHHHchhhcccccccc
Q 029266 31 MECYMQKTYNKTAALVSNS-CKAVAYLSGQREEVA--TLAFEYGKNLGLAYQLIDDILDFTGT 90 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L~~~~-~~~ga~lag~~~~~~--~~l~~~g~~lGiafQi~DD~ld~~~~ 90 (196)
+++|+.+-..-+|..+-.+ +..+. --..+++.. ..+.++-+..+...-+.||+..+..+
T Consensus 166 ~eEYl~~r~~s~g~~~~~~~~~~~~-g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl~S~~kE 227 (337)
T 1ps1_A 166 AAQYLAMRRHTIGVQPTVDLAERAG-RFEVPHRVFDSAVMSAMLQIAVDVNLLLNDIASLEKE 227 (337)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHcccccchhhHHHHHHHHc-CCCCCHHHHhChHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5677766554444443222 22221 112234332 25667888889999999999999754
No 63
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=46.30 E-value=80 Score=25.75 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 59 QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 59 ~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
.+.+....+...-+.+=.++-|-||+.|= +|++.|++|+-..|
T Consensus 73 ~~~~~~~~~A~aiEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 115 (334)
T 3pko_A 73 ATPAQLQAGAAAIEILHVGTLIHDDVIDD------------SPTRRGVRTIQMTY 115 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCccCCC------------CCCcCCCccHHHHc
Confidence 36666666777778888899999999552 35677788776555
No 64
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=45.13 E-value=1.2e+02 Score=24.60 Aligned_cols=46 Identities=26% Similarity=0.303 Sum_probs=29.4
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 56 LSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 56 lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
+.|.+++....+...-+.+=.++-|.||+.|= +|++.|++|+-..|
T Consensus 54 ~~~~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 99 (340)
T 2e8v_A 54 VMNLPKDQLAIVSQIVELLHNSSLLIDDIEDN------------APLRRGQTTSHLIF 99 (340)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCcchhhcc
Confidence 33555555555666666777788899999553 34666777765444
No 65
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=44.89 E-value=73 Score=25.55 Aligned_cols=40 Identities=28% Similarity=0.283 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 62 EVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 62 ~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
+....+...-+.+=.++-|.||+.|= +|++.|++|+-..|
T Consensus 61 ~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 100 (299)
T 1v4e_A 61 EDAISSLAALELVHLASLLHDDVIDG------------ARFRRGKETINFMY 100 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCCCC------------CCCCCCCCchhhhc
Confidence 33444555666667788899999652 35677777776655
No 66
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=44.23 E-value=1.6e+02 Score=25.87 Aligned_cols=58 Identities=9% Similarity=0.032 Sum_probs=36.6
Q ss_pred HHHHHHHHhcchHHHH-HHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHchhhcccccccc
Q 029266 31 MECYMQKTYNKTAALV-SNSCKAVAYLSG-QREEVATLA---FEYGKNLGLAYQLIDDILDFTGT 90 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L~-~~~~~~ga~lag-~~~~~~~~l---~~~g~~lGiafQi~DD~ld~~~~ 90 (196)
+++|++...--+|..+ ...+.+|. +. .+++..+.+ .++-+..+...-+.||+..+-.+
T Consensus 397 ~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E 459 (554)
T 3g4d_A 397 FEEFKANALPTCGYAMLAITSFVGM--GDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFK 459 (554)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHTS--CTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHhccceeehHHHHHHHHHHhc--CCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhh
Confidence 6888888776666543 22222221 11 345554443 47888999999999999998654
No 67
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=41.50 E-value=71 Score=26.38 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 60 REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 60 ~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
+.+....+...-+.+=.++-|-||+.|= +|++.|++|+-..|
T Consensus 63 ~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 104 (358)
T 4dhd_A 63 QWRPALPAAAIVELIHNYSLIYDDIIDR------------GDVRRGLPTVRKAF 104 (358)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHTT------------CCEETTEECHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCccccC------------CCCcCCCccHHHhc
Confidence 3333445556667777889999999552 34677777776655
No 68
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=39.43 E-value=81 Score=25.69 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=29.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 57 SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 57 ag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
.|.+++....+...-+.+=.++-|.||+.|= +|++.|++|+-..|
T Consensus 61 ~g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 105 (342)
T 1wy0_A 61 VGGDPLRAIYPAVAIELIHNYSLVHDDIMDM------------DETRRGKPTVHRIW 105 (342)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCCSTTSCCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHCCcccC------------CCCCCCCCcccccc
Confidence 3444444445666666777788999999662 34677777776655
No 69
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=39.39 E-value=1.5e+02 Score=23.90 Aligned_cols=37 Identities=24% Similarity=0.148 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHchhhcc--ccccccccccCCCcchhhhcccCcHHHHH
Q 029266 65 TLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 65 ~~l~~~g~~lGiafQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
..+...-+.+=.+.-|-||+ .|= +|+++|++|+-..|
T Consensus 73 ~~~A~aiEliH~aSLIHDDiP~mD~------------s~~RRG~pt~h~~~ 111 (309)
T 3pde_A 73 WRPVMALELLHTYSLIHDDLPAMDN------------DALRRGEPTNHVKF 111 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTTC------------CSEETTEECHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCchhccC------------CCCCCCCcchhhhc
Confidence 45556667777888999998 663 35677777776665
No 70
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=38.79 E-value=1.3e+02 Score=24.37 Aligned_cols=51 Identities=22% Similarity=0.001 Sum_probs=32.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 51 KAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 51 ~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
.+++.+.|.+++....+...-+.+=.++-|.||+.|= +|++.|++|+=..|
T Consensus 48 l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D~------------s~~RRG~pt~h~~~ 98 (330)
T 1wmw_A 48 VYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDG------------SEERRGRPALHRLH 98 (330)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccC------------CCCCCCCCcccccc
Confidence 3344444556555556666677777889999999652 24566777655443
No 71
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=37.90 E-value=44 Score=27.54 Aligned_cols=36 Identities=25% Similarity=0.175 Sum_probs=23.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhcccc
Q 029266 51 KAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILD 86 (196)
Q Consensus 51 ~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld 86 (196)
.+++.+.|.+.+....+...-+.+=.++-|-||+.|
T Consensus 74 ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 74 VAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 334444454444445566667778888999999966
No 72
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=37.13 E-value=1.3e+02 Score=23.94 Aligned_cols=49 Identities=18% Similarity=0.045 Sum_probs=30.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 53 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 53 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
++.+.|.+++....+...-+.+=.++=|-||+.|= +|++.|++|+-..|
T Consensus 60 ~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D~------------s~~RRG~pt~h~~~ 108 (289)
T 2azj_A 60 FTVALGGDIKDSYGGALAIEILHSASLALCDIVDL------------DATRRGDKAAWVVY 108 (289)
T ss_dssp HHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHTT------------CCBSSSSBCHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCCCccHHHhc
Confidence 33334444433445555666677788899999542 35677888876655
No 73
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=36.18 E-value=1.7e+02 Score=23.50 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHchhhcc--ccccccccccCCCcchhhhcccCcHHHHH
Q 029266 63 VATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 63 ~~~~l~~~g~~lGiafQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
....+...-+.+=.++-|-||+ .|= +|+++|++|+-..|
T Consensus 72 ~~~~~A~avEliH~asLIHDDIP~mD~------------s~~RRG~pt~h~~~ 112 (302)
T 3p8l_A 72 QDYQVAASLEMIHTYSLIHDDLPAMDD------------DDLRRGKPTNHKVF 112 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTC------------CSEETTEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCchhccC------------CCccCCCcchhhhc
Confidence 4445666667778889999999 663 34677777776665
No 74
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=34.98 E-value=92 Score=25.76 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=24.2
Q ss_pred HHHHcC-CCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 53 VAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 53 ga~lag-~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
++.+.+ .+.+....+...-+.+=.+.-|-||+.|= +|++.|++|+-..|
T Consensus 85 ~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~------------s~~RRG~pt~h~~~ 134 (360)
T 3lmd_A 85 ASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDE------------ASMRRGVPSANARW 134 (360)
T ss_dssp HHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCC------------CCCCCCCCcHHhhc
Confidence 344444 34444445566667777889999999652 35677777766555
No 75
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=34.26 E-value=1.2e+02 Score=24.48 Aligned_cols=40 Identities=18% Similarity=-0.008 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHchhhcc--ccccccccccCCCcchhhhcccCcHHHHH
Q 029266 62 EVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 62 ~~~~~l~~~g~~lGiafQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
+....+...-+.+=.++-|-||+ .|= +|+++|++|+-..|
T Consensus 74 ~~~~~~A~aiEliH~aSLIHDDIp~mD~------------s~~RRG~pt~h~~~ 115 (311)
T 3llw_A 74 TEYFKIALSIECLHTYSLIHDDLPCMDN------------AALRRNHPTLHAKY 115 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTTC------------CSEETTEECHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccCC------------CcccCCCCchhhhc
Confidence 44445555556667788899998 553 34667777766554
No 76
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=32.05 E-value=1.4e+02 Score=23.90 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=29.9
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHchhhcc--ccccccccccCCCcchhhhcccCcHHHHH
Q 029266 55 YLSGQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 55 ~lag~~~~~~~~l~~~g~~lGiafQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
.+.|.+++..-.+...-+.+=.+.-|-||+ .| + +|+++|++|+-..|
T Consensus 55 ~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D--~----------s~~RRG~pt~h~~~ 103 (301)
T 1rtr_A 55 DSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMD--N----------DDYRRGKLTNHKVY 103 (301)
T ss_dssp HHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTT--C----------CSEETTEECHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhCCchhcc--C----------CCccCCCccHHhhc
Confidence 333444433344555666677788899999 65 2 35677888776665
No 77
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=27.66 E-value=19 Score=29.96 Aligned_cols=13 Identities=31% Similarity=0.100 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHh
Q 029266 132 PANVDVILEYLGK 144 (196)
Q Consensus 132 ~~~~~~i~~~~~~ 144 (196)
++....+.+.+.+
T Consensus 287 ~~~r~~L~~~~~~ 299 (368)
T 2q58_A 287 EEMKLKISENYGK 299 (368)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCC
Confidence 3444445554433
No 78
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=27.27 E-value=2.3e+02 Score=22.44 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=31.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHchhhcc--ccccccccccCCCcchhhhcccCcHHHHH
Q 029266 53 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 53 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
++.+.|.+++....+...-+.+=.+.-|.||+ .|= +|+++|++|+-..|
T Consensus 55 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D~------------s~~RRG~pt~h~~~ 105 (299)
T 1rqj_A 55 TGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDD------------DDLRRGLPTCHVKF 105 (299)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC------------CCEETTEECHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhcC------------CCCCCCCCChhhhc
Confidence 34444556555455666666677788899998 763 34677777776655
No 79
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=26.56 E-value=2.6e+02 Score=22.72 Aligned_cols=49 Identities=27% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHchhhcc--ccccccccccCCCcchhhhcccCcHHHHH
Q 029266 53 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 53 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
++.+.|.+++....+...-+.+=.+.-|.||+ .|= +|++.|++|+=..|
T Consensus 96 ~~~~~g~~~~~~~~~A~aiEliH~asLIHDDiPamD~------------s~~RRG~pt~h~~~ 146 (335)
T 2h8o_A 96 SVALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMDD------------DDLRRGQPTVHRKF 146 (335)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC------------CSEETTEECHHHHS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccC------------CCcCCCCCcHhhhc
Confidence 33344555554445566666677788899998 663 24566777765544
No 80
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=24.82 E-value=2.6e+02 Score=22.21 Aligned_cols=68 Identities=21% Similarity=0.096 Sum_probs=39.5
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHH
Q 029266 33 CYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPIL 112 (196)
Q Consensus 33 ~yl~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i 112 (196)
.|. ..-.|-=. ..-+.+++.+.|.+++....+...-+.+=.++-|-||+-..=+ +|+++|++|+-..
T Consensus 35 ~y~-~~gGKrlR--p~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD~----------s~~RRG~pt~h~~ 101 (297)
T 3m0g_A 35 AYA-AQGGKRLR--AFLAIESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMDN----------DDLRRGLPTVHKK 101 (297)
T ss_dssp HHH-HSCSCCHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC----------CSEETTEECHHHH
T ss_pred HHH-cCCCCcHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccCC----------CCccCCCCCchhh
Confidence 455 55555321 1112333444566666666677777778888999999832222 3466777776555
Q ss_pred H
Q 029266 113 F 113 (196)
Q Consensus 113 ~ 113 (196)
|
T Consensus 102 ~ 102 (297)
T 3m0g_A 102 W 102 (297)
T ss_dssp S
T ss_pred c
Confidence 4
No 81
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=24.75 E-value=2.6e+02 Score=22.65 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=29.7
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHchhhcc--ccccccccccCCCcchhhhcccCcHHHHH
Q 029266 56 LSGQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 56 lag~~~~~~~~l~~~g~~lGiafQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
+.|.+.+....+...-+.+=.+.-|-||+ .|= +|+++|++|+-..|
T Consensus 64 ~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD~------------~~~RRG~pt~h~~~ 111 (324)
T 3ts7_A 64 TIGVAADLLDGPACAVEFIHVYSLIHDDLPAMDD------------DDLRRGKPTCHKAY 111 (324)
T ss_dssp HHTCCGGGTHHHHHHHHHHHHHHHHHHTSTTTTC------------CSEETTEECHHHHS
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhhcCcccccC------------CCccCCCCchhhhc
Confidence 33455544555666667777888999998 442 34677777766554
No 82
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=24.50 E-value=1.7e+02 Score=27.13 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=22.5
Q ss_pred CHHHHHHHH-----HHHHHHHHHHchhhcccccccc
Q 029266 60 REEVATLAF-----EYGKNLGLAYQLIDDILDFTGT 90 (196)
Q Consensus 60 ~~~~~~~l~-----~~g~~lGiafQi~DD~ld~~~~ 90 (196)
+++..+... ++-+..+...-+.||+..+..+
T Consensus 686 t~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E 721 (817)
T 3sdr_A 686 SQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAE 721 (817)
T ss_dssp CHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC-
T ss_pred CHHHHhcccccchHHHHHHHHHHHHHhccchHHHHH
Confidence 455555544 6778888888999999988654
No 83
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=24.41 E-value=1.6e+02 Score=23.58 Aligned_cols=49 Identities=27% Similarity=0.163 Sum_probs=31.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHchhhcc--ccccccccccCCCcchhhhcccCcHHHHH
Q 029266 53 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 53 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
++.+.|.+++....+...-+.+=.++-|-||+ .|= +|+|+|++|+-..|
T Consensus 55 ~~~~~g~~~~~~~~~A~aiEliH~asLIHDDip~mD~------------s~~RRG~pt~h~~~ 105 (304)
T 3lsn_A 55 ACEALGGKPEQANGAACAVELIHAYSLVHDDLPAMDD------------DDLRRGQPTTHKAF 105 (304)
T ss_dssp HHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTTTTC------------CSEETTEECHHHHS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccC------------CCccCCCCchHhhc
Confidence 33444555555555666667777888999998 442 34677777776654
No 84
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=24.22 E-value=3e+02 Score=24.16 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=36.6
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHc-C-CCHHHHHH---HHHHHHHHHHHHchhhcccccccc
Q 029266 31 MECYMQKTYNKTAALVSNSCKAVAYLS-G-QREEVATL---AFEYGKNLGLAYQLIDDILDFTGT 90 (196)
Q Consensus 31 ~~~yl~~~~~KTa~L~~~~~~~ga~la-g-~~~~~~~~---l~~~g~~lGiafQi~DD~ld~~~~ 90 (196)
+++|++...--+|..+-.+.. .++ . .+.+..+. ..++-+..+...-+.||+..+-.+
T Consensus 393 ~EEYl~na~vSsg~~~l~~~~---f~g~~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E 454 (550)
T 3m00_A 393 VSEYLSNALATTTYYLLATTS---YLGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVE 454 (550)
T ss_dssp HHHHHHHHTGGGSHHHHHHHH---HHTCTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHhccccchHHHHHHHH---HHcCCCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHH
Confidence 688988877666655322221 222 2 34544433 346788899999999999988654
No 85
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=23.69 E-value=2.5e+02 Score=22.56 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=33.1
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHH
Q 029266 53 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 53 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
++.+.|.+.+....+...-+.+=.+.-|-||+-..-+ +|+++|++|+-..|
T Consensus 61 ~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDip~mD~----------~~~RRG~pt~h~~~ 111 (313)
T 3lom_A 61 AGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMDN----------DDLRRGKPSCHKAF 111 (313)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC----------CSEETTEECHHHHS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCcccccC----------CCccCCCCCchhhc
Confidence 3444566666666677777778888999999822212 34677777766554
No 86
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=22.08 E-value=1.6e+02 Score=23.65 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=24.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHchhhcc--ccccccccccCCCcchhhhcccCcHHHHH
Q 029266 52 AVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 52 ~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
+.+.+.|.+++....+...-+.+=.++-|-||+ .|= +|+++|++|+-..|
T Consensus 60 ~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDIp~mD~------------s~~RRG~pt~h~~~ 111 (302)
T 3p8r_A 60 ITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDD------------DELRRGKPTCHIQF 111 (302)
T ss_dssp HHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTCHHHHC------------CC------------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccC------------CCcCCCCcchhhhc
Confidence 334444555555555666667778889999998 553 24566777665544
No 87
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=21.80 E-value=3.2e+02 Score=22.03 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHchhhcc--ccccccccccCCCcchhhhcccCcHHHHH
Q 029266 58 GQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 58 g~~~~~~~~l~~~g~~lGiafQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
|.+.+....+...-+.+=.+.-|-||+ .|= +|+++|++|+-..|
T Consensus 61 g~~~~~~~~~A~avEliH~aSLIHDDip~mD~------------s~~RRG~pt~h~~~ 106 (317)
T 4f62_A 61 GDISSLTDASAAALESIHAYSLIHDDLPAMDN------------DELRRGKPTCHIQF 106 (317)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHSTTSCC-------------------CCHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCcccccC------------CCCcCCCccHHhhc
Confidence 444445556666667777889999998 442 35677777776654
No 88
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=21.77 E-value=1.6e+02 Score=25.87 Aligned_cols=38 Identities=13% Similarity=-0.058 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHchhhccccccccccccCCCcchhhhccc-CcHHHHHHh
Q 029266 67 AFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGI-ITAPILFAM 115 (196)
Q Consensus 67 l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk-~T~p~i~al 115 (196)
..++-+..++..-+.||+..+-.+. .+|. .|.+.+|..
T Consensus 432 ~p~i~~~~~~i~RL~NDi~S~~~E~-----------~rG~v~n~V~cyMk 470 (549)
T 1n1b_A 432 YHDILCLAGIILRLPDDLGTSYFEL-----------ARGDVPKTIQCYMK 470 (549)
T ss_dssp TCHHHHHHHHHHHHHHHHC--------------------CCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccchhhhhh-----------ccCCccHHHHHHHH
Confidence 3567888899999999998886543 2344 367766643
No 89
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=20.63 E-value=2.1e+02 Score=23.13 Aligned_cols=49 Identities=20% Similarity=0.145 Sum_probs=32.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHchhhcc--ccccccccccCCCcchhhhcccCcHHHHH
Q 029266 53 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 113 (196)
Q Consensus 53 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~ 113 (196)
++.+.|.+.+....+...-+.+=.+.-|-||+ .|= +|+++|++|+-..|
T Consensus 85 ~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDIP~mD~------------s~~RRG~pt~h~~~ 135 (324)
T 3uca_A 85 SYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMDN------------DDLRRGKPTNHKVF 135 (324)
T ss_dssp HHHTTCSCGGGGHHHHHHHHHHHHHHHHHHTSTTTTC------------CSEETTEECHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccC------------CCCCCCCccHHHhc
Confidence 33444555544445556667777888999998 663 35677888877666
Done!