RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 029266
         (196 letters)



>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 280

 Score = 68.1 bits (165), Expect = 1e-14
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 9/147 (6%)

Query: 25  KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84
           ++  +  E Y++    K+ AL   + +  A L G+  E     +  G  +G  YQ+ DDI
Sbjct: 142 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDL---YNLGVTIGTIYQMFDDI 198

Query: 85  LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGK 144
           +DF G           DL+NG+ + P++ AME+FP+ R    +      +   ++ ++ +
Sbjct: 199 MDFAGMEKIGKDGF-LDLKNGVASFPLVTAMEKFPEARQMFENR-----DWSGLMSFMRE 252

Query: 145 SHGIQRTTELALKHASLAAAAIDSLPE 171
              ++   E               L +
Sbjct: 253 KGILKECEETLKVLVKNVIIENSWLRD 279


>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 291

 Score = 58.2 bits (139), Expect = 4e-11
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 13/169 (7%)

Query: 26  HTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDIL 85
           +T    E Y      KT  L   +   +   S  +E++          LGL +Q+ DD  
Sbjct: 131 YTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDL----KPLLNTLGLFFQIRDDYA 186

Query: 86  DFTGTSASLGKASLTDLRNGIITAPILFAME---EFPQLRAFINSSSDNPANVDVILEYL 142
           +      S  K+   DL  G  + P + A+    E  Q++  +   ++N       + YL
Sbjct: 187 NLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYL 246

Query: 143 GKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKI 191
                 + T     +  + A   ID+              ALV    K+
Sbjct: 247 EDVGSFEYTRNTLKELEAKAYKQIDARGG------NPELVALVKHLSKM 289


>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Escherichia coli [TaxId:
           562]}
          Length = 299

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 39/173 (22%)

Query: 25  KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAF-EYGKNLGLAYQLIDD 83
           +   V ++   +   +KT AL+  + +  A  +G +   A     +Y +++GLA+Q+ DD
Sbjct: 165 EGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDD 224

Query: 84  ILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLG 143
           ILD  G +A+LGK    D + G  T P L  +E+                          
Sbjct: 225 ILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQ-------------------------- 258

Query: 144 KSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
                    + A      A  ++  L E      +   +AL  +   II RNK
Sbjct: 259 -------ARKKARDLIDDARQSLKQLAEQ-----SLDTSALEALADYIIQRNK 299


>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Staphylococcus aureus [TaxId:
           1280]}
          Length = 290

 Score = 33.1 bits (74), Expect = 0.013
 Identities = 24/87 (27%), Positives = 39/87 (44%)

Query: 31  MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGT 90
           +E        KT AL++ +  + A ++   +        Y  +LG+ +Q+ DD+LD  G 
Sbjct: 166 LETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGD 225

Query: 91  SASLGKASLTDLRNGIITAPILFAMEE 117
            A LGK   +DL N   T   L   + 
Sbjct: 226 EAKLGKKVGSDLENNKSTYVSLLGKDG 252


>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
          Length = 967

 Score = 26.1 bits (57), Expect = 4.0
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 19  VALASLKH-TEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLA 77
           +++ +L+H T +I   Y+     +  A + N+    A LS   +    L   Y   L   
Sbjct: 501 ISIENLRHKTGLIRAMYLNGFVTQPPAWIRNANSNTALLSRFLDATPNLLGIYEAILANT 560

Query: 78  Y 78
           Y
Sbjct: 561 Y 561


>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 511

 Score = 25.4 bits (55), Expect = 5.8
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 99  LTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKH 158
           L    + + T   L  +  FP    F  S+    +  D   EYL K + +     L    
Sbjct: 205 LYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSRGDSFYEYLLKQY-LLTHETLYYDL 263

Query: 159 ASLAAAAIDS 168
              +   +  
Sbjct: 264 YRKSMEGMKK 273


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.354 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 639,993
Number of extensions: 26972
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 8
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)