Your job contains 1 sequence.
>029267
MVLTMAAQSYTTTPLHRKITNKPLCPPLLSLKPRSLTAKHLRTTQSTSLPRISVSAAATS
SIEVKESSASIQPSKSKSLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVL
LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRFFFLIYILIYIEIVMGYS
NSMIWLQNLWGFHSRG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029267
(196 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2024618 - symbol:ISPF "isoprenoid F" species:3... 450 1.5e-42 1
TIGR_CMR|GSU_3367 - symbol:GSU_3367 "2C-methyl-D-erythrit... 257 4.3e-22 1
TIGR_CMR|VC_0529 - symbol:VC_0529 "2C-methyl-D-erythritol... 253 1.1e-21 1
UNIPROTKB|P62617 - symbol:ispF "2-C-methyl-D-erythritol 2... 251 1.9e-21 1
TIGR_CMR|BA_0085 - symbol:BA_0085 "2C-methyl-D-erythritol... 246 6.3e-21 1
TIGR_CMR|SPO_2090 - symbol:SPO_2090 "2-C-methyl-D-erythri... 244 1.4e-20 1
TIGR_CMR|SO_3437 - symbol:SO_3437 "2C-methyl-D-erythritol... 237 5.7e-20 1
TIGR_CMR|APH_1276 - symbol:APH_1276 "2C-methyl-D-erythrit... 235 9.2e-20 1
TIGR_CMR|CHY_2341 - symbol:CHY_2341 "2C-methyl-D-erythrit... 222 2.2e-18 1
TIGR_CMR|CPS_1073 - symbol:CPS_1073 "2C-methyl-D-erythrit... 218 5.8e-18 1
TIGR_CMR|DET_0060 - symbol:DET_0060 "2C-methyl-D-erythrit... 211 3.2e-17 1
TIGR_CMR|CJE_1779 - symbol:CJE_1779 "ispD/ispF bifunction... 208 1.8e-16 1
UNIPROTKB|P65183 - symbol:ispF "2-C-methyl-D-erythritol 2... 202 2.9e-16 1
TIGR_CMR|NSE_0134 - symbol:NSE_0134 "2C-methyl-D-erythrit... 200 4.7e-16 1
GENEDB_PFALCIPARUM|PFB0420w - symbol:PFB0420w "2C-methyl-... 151 4.2e-14 2
UNIPROTKB|P62368 - symbol:ISPF "2-C-methyl-D-erythritol 2... 151 4.2e-14 2
TIGR_CMR|ECH_0156 - symbol:ECH_0156 "2C-methyl-D-erythrit... 169 9.1e-13 1
>TAIR|locus:2024618 [details] [associations]
symbol:ISPF "isoprenoid F" species:3702 "Arabidopsis
thaliana" [GO:0008685 "2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase activity" evidence=IEA;IGI;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016114 "terpenoid biosynthetic process"
evidence=IEA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=ISS;RCA]
[GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;IMP]
[GO:0016117 "carotenoid biosynthetic process" evidence=RCA;IMP]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0006364 "rRNA
processing" evidence=RCA] [GO:0006636 "unsaturated fatty acid
biosynthetic process" evidence=RCA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0006744 "ubiquinone biosynthetic process" evidence=RCA]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009637 "response to blue light" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0009965 "leaf morphogenesis" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010114
"response to red light" evidence=RCA] [GO:0010155 "regulation of
proton transport" evidence=RCA] [GO:0010218 "response to far red
light" evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR003526 InterPro:IPR020555 Pfam:PF02542
PROSITE:PS01350 UniPathway:UPA00056 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0009570 GO:GO:0046872
EMBL:AC007764 GO:GO:0016117 GO:GO:0015995 GO:GO:0019288
eggNOG:COG0245 GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770 EMBL:AF321531
EMBL:AC010852 EMBL:AY059096 EMBL:AF370154 EMBL:AY085564
IPI:IPI00517334 IPI:IPI00535363 PIR:H96664 RefSeq:NP_564819.2
RefSeq:NP_850971.1 UniGene:At.16455 PDB:2PMP PDBsum:2PMP
ProteinModelPortal:Q9CAK8 SMR:Q9CAK8 IntAct:Q9CAK8 STRING:Q9CAK8
PaxDb:Q9CAK8 PRIDE:Q9CAK8 ProMEX:Q9CAK8 EnsemblPlants:AT1G63970.1
GeneID:842700 KEGG:ath:AT1G63970 TAIR:At1g63970 InParanoid:Q9CAK8
OMA:HKFGGEG PhylomeDB:Q9CAK8 ProtClustDB:PLN02862
BioCyc:ARA:AT1G63970-MONOMER BioCyc:MetaCyc:AT1G63970-MONOMER
EvolutionaryTrace:Q9CAK8 Genevestigator:Q9CAK8 GermOnline:AT1G63970
Uniprot:Q9CAK8
Length = 231
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 91/124 (73%), Positives = 99/124 (79%)
Query: 42 RTTQSTSL---PRISVSAAATSSIEVXXXXXXXXXXXXXXLPFRVGHGFDLHRLEPGYPL 98
R +S SL P SVSAA+ S+++V LPFR+GHGFDLHRLEPGYPL
Sbjct: 36 RPKKSLSLSCRPSASVSAAS-SAVDVNESVTSEKPTKT--LPFRIGHGFDLHRLEPGYPL 92
Query: 99 IIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIK 158
IIGGI +PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIK
Sbjct: 93 IIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIK 152
Query: 159 EAVR 162
EAVR
Sbjct: 153 EAVR 156
>TIGR_CMR|GSU_3367 [details] [associations]
symbol:GSU_3367 "2C-methyl-D-erythritol
2,4-cyclodiphosphate synthase" species:243231 "Geobacter
sulfurreducens PCA" [GO:0008299 "isoprenoid biosynthetic process"
evidence=ISS] [GO:0008685 "2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase activity" evidence=ISS]
HAMAP:MF_00107 InterPro:IPR003526 InterPro:IPR020555 Pfam:PF02542
PROSITE:PS01350 UniPathway:UPA00056 GO:GO:0046872 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016114 GO:GO:0019288
eggNOG:COG0245 GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770 OMA:HKFGGEG
ProtClustDB:PRK00084 RefSeq:NP_954407.1 ProteinModelPortal:Q747A0
SMR:Q747A0 GeneID:2688198 KEGG:gsu:GSU3367 PATRIC:22029589
BioCyc:GSUL243231:GH27-3317-MONOMER Uniprot:Q747A0
Length = 157
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 45/80 (56%), Positives = 60/80 (75%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+GHG+D+HRL G LI+GG+++PHE G HSD DVLLH + DAILGAL L DIG+ F
Sbjct: 2 RIGHGYDVHRLVAGRKLIVGGVDIPHELGLLGHSDADVLLHAISDAILGALALGDIGKHF 61
Query: 142 PDSDPKWKGAPSSVFIKEAV 161
PD+DP++KGA S ++ +
Sbjct: 62 PDTDPRYKGADSRALLRHVM 81
>TIGR_CMR|VC_0529 [details] [associations]
symbol:VC_0529 "2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0008685 "2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
activity" evidence=ISS] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=ISS]
HAMAP:MF_00107 InterPro:IPR003526 InterPro:IPR020555 Pfam:PF02542
PROSITE:PS01350 UniPathway:UPA00056 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0016114 GO:GO:0019288
eggNOG:COG0245 GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 KO:K01770 OMA:HKFGGEG ProtClustDB:PRK00084
PIR:D82311 RefSeq:NP_230180.1 ProteinModelPortal:Q9KUJ1 SMR:Q9KUJ1
DNASU:2615820 GeneID:2615820 KEGG:vch:VC0529 PATRIC:20080162
Uniprot:Q9KUJ1
Length = 158
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 45/81 (55%), Positives = 59/81 (72%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+GHGFD+HR P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA+ DIG+ F
Sbjct: 3 RIGHGFDVHRFGGEGPIIIGGVKIPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHF 62
Query: 142 PDSDPKWKGAPSSVFIKEAVR 162
PD+D KWKGA S +K+ R
Sbjct: 63 PDTDDKWKGADSRELLKDVYR 83
>UNIPROTKB|P62617 [details] [associations]
symbol:ispF "2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase monomer" species:83333 "Escherichia coli K-12" [GO:0016114
"terpenoid biosynthetic process" evidence=IEA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0008299 "isoprenoid biosynthetic
process" evidence=IEA] [GO:0008685 "2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase activity" evidence=IEA;IDA]
[GO:0006744 "ubiquinone biosynthetic process" evidence=IDA]
HAMAP:MF_00107 InterPro:IPR003526 InterPro:IPR020555 Pfam:PF02542
PROSITE:PS01350 UniPathway:UPA00056 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0006744 GO:GO:0016114 EMBL:U29579 GO:GO:0019288
eggNOG:COG0245 GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770 OMA:HKFGGEG
ProtClustDB:PRK00084 EMBL:L07942 EMBL:AF230738 EMBL:AB038256
PIR:I55083 RefSeq:NP_417226.1 RefSeq:YP_490955.1 PDB:1GX1 PDB:1H47
PDB:1H48 PDB:1JY8 PDB:1KNJ PDB:1KNK PDB:1U3L PDB:1U3P PDB:1U40
PDB:1U43 PDB:1YQN PDB:2AMT PDB:2GZL PDB:3ELC PDB:3EOR PDB:3ERN
PDB:3ESJ PDB:3FBA PDBsum:1GX1 PDBsum:1H47 PDBsum:1H48 PDBsum:1JY8
PDBsum:1KNJ PDBsum:1KNK PDBsum:1U3L PDBsum:1U3P PDBsum:1U40
PDBsum:1U43 PDBsum:1YQN PDBsum:2AMT PDBsum:2GZL PDBsum:3ELC
PDBsum:3EOR PDBsum:3ERN PDBsum:3ESJ PDBsum:3FBA
ProteinModelPortal:P62617 SMR:P62617 DIP:DIP-48029N IntAct:P62617
EnsemblBacteria:EBESCT00000001398 EnsemblBacteria:EBESCT00000017827
GeneID:12933285 GeneID:945057 KEGG:ecj:Y75_p2684 KEGG:eco:b2746
PATRIC:32120898 EchoBASE:EB1763 EcoGene:EG11816
BioCyc:EcoCyc:EG11816-MONOMER BioCyc:ECOL316407:JW2716-MONOMER
BioCyc:MetaCyc:EG11816-MONOMER BRENDA:4.6.1.12 BindingDB:P62617
EvolutionaryTrace:P62617 Genevestigator:P62617 Uniprot:P62617
Length = 159
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 45/81 (55%), Positives = 60/81 (74%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++F
Sbjct: 2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLF 61
Query: 142 PDSDPKWKGAPSSVFIKEAVR 162
PD+DP +KGA S ++EA R
Sbjct: 62 PDTDPAFKGADSRELLREAWR 82
>TIGR_CMR|BA_0085 [details] [associations]
symbol:BA_0085 "2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase" species:198094 "Bacillus anthracis str. Ames" [GO:0008299
"isoprenoid biosynthetic process" evidence=ISS] [GO:0008685
"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"
evidence=ISS] HAMAP:MF_00107 InterPro:IPR003526 InterPro:IPR020555
Pfam:PF02542 PROSITE:PS01350 UniPathway:UPA00056 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016114
GO:GO:0019288 eggNOG:COG0245 GO:GO:0008685 Gene3D:3.30.1330.50
SUPFAM:SSF69765 TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770
OMA:HKFGGEG RefSeq:NP_842654.1 RefSeq:YP_016690.1
RefSeq:YP_026372.1 ProteinModelPortal:Q81VV4 SMR:Q81VV4
DNASU:1088079 EnsemblBacteria:EBBACT00000012656
EnsemblBacteria:EBBACT00000015013 EnsemblBacteria:EBBACT00000020098
GeneID:1088079 GeneID:2814918 GeneID:2851167 KEGG:ban:BA_0085
KEGG:bar:GBAA_0085 KEGG:bat:BAS0086 ProtClustDB:PRK00084
BioCyc:BANT260799:GJAJ-97-MONOMER BioCyc:BANT261594:GJ7F-99-MONOMER
Uniprot:Q81VV4
Length = 158
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 44/79 (55%), Positives = 57/79 (72%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
FR+G GFD+H G PLIIGGI +PHE+G HSD DVLLH + DA LGA+ DIG+
Sbjct: 2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKH 61
Query: 141 FPDSDPKWKGAPSSVFIKE 159
FPD+DP +K A S+V +++
Sbjct: 62 FPDTDPAFKDADSAVLLQK 80
>TIGR_CMR|SPO_2090 [details] [associations]
symbol:SPO_2090 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase/ 2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008685
"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"
evidence=ISS] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=ISS] [GO:0050518
"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"
evidence=ISS] HAMAP:MF_01520 InterPro:IPR001228 InterPro:IPR003526
InterPro:IPR018294 InterPro:IPR020555 Pfam:PF01128 Pfam:PF02542
PROSITE:PS01295 PROSITE:PS01350 UniPathway:UPA00056 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0016114 GO:GO:0019288
eggNOG:COG0245 HOGENOM:HOG000252034 KO:K12506 GO:GO:0008685
GO:GO:0050518 Gene3D:3.30.1330.50 InterPro:IPR026596
SUPFAM:SSF69765 TIGRFAMs:TIGR00151 RefSeq:YP_167320.1
ProteinModelPortal:Q5LRN5 GeneID:3193402 KEGG:sil:SPO2090
PATRIC:23377521 ProtClustDB:CLSK933757 Uniprot:Q5LRN5
Length = 377
Score = 244 (91.0 bits), Expect = 1.4e-20, P = 1.4e-20
Identities = 44/80 (55%), Positives = 59/80 (73%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+G+G+D+HR PG +I+ GI VPH+RG + HSD DV +H V DA+ GAL DIG+ F
Sbjct: 222 RLGNGYDVHRFGPGDHVILCGIKVPHDRGLQGHSDADVGMHAVTDALYGALVEGDIGRHF 281
Query: 142 PDSDPKWKGAPSSVFIKEAV 161
P SDP+WKGA S +F++ AV
Sbjct: 282 PPSDPQWKGAASEIFLRHAV 301
>TIGR_CMR|SO_3437 [details] [associations]
symbol:SO_3437 "2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase" species:211586 "Shewanella oneidensis MR-1" [GO:0008299
"isoprenoid biosynthetic process" evidence=ISS] [GO:0008685
"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"
evidence=ISS] HAMAP:MF_00107 InterPro:IPR003526 InterPro:IPR020555
Pfam:PF02542 PROSITE:PS01350 UniPathway:UPA00056 GO:GO:0046872
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0016114 GO:GO:0019288
eggNOG:COG0245 GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770 OMA:HKFGGEG
ProtClustDB:PRK00084 RefSeq:NP_718990.1 PDB:1T0A PDBsum:1T0A
ProteinModelPortal:Q8EBR3 SMR:Q8EBR3 GeneID:1171112
KEGG:son:SO_3437 PATRIC:23526562 EvolutionaryTrace:Q8EBR3
Uniprot:Q8EBR3
Length = 159
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 43/80 (53%), Positives = 58/80 (72%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
+ R+GHGFD+H+ PLI+ G+ VP+E G AHSDGDV+LH + DAILGA+ L DIG
Sbjct: 1 MKIRIGHGFDVHKFGEPRPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIG 60
Query: 139 QIFPDSDPKWKGAPSSVFIK 158
+ FPD+D +KGA S V ++
Sbjct: 61 KHFPDTDAAYKGADSRVLLR 80
>TIGR_CMR|APH_1276 [details] [associations]
symbol:APH_1276 "2C-methyl-D-erythritol
2,4-cyclodiphosphate synthase" species:212042 "Anaplasma
phagocytophilum HZ" [GO:0008685 "2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase activity" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] HAMAP:MF_00107
InterPro:IPR003526 InterPro:IPR020555 Pfam:PF02542 PROSITE:PS01350
UniPathway:UPA00056 GO:GO:0046872 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016114 GO:GO:0019288
eggNOG:COG0245 GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 RefSeq:YP_505793.1 ProteinModelPortal:Q2GIK8
STRING:Q2GIK8 GeneID:3930761 KEGG:aph:APH_1276 PATRIC:20951342
HOGENOM:HOG000239175 KO:K01770 ProtClustDB:CLSK749413
BioCyc:APHA212042:GHPM-1279-MONOMER Uniprot:Q2GIK8
Length = 168
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 48/86 (55%), Positives = 58/86 (67%)
Query: 79 LPFRVGHGFDLHRL----EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGL 134
+PFRVG GFD+HR E G + I GI V H +G AHSDGDV LH + DA+LG +G
Sbjct: 6 MPFRVGMGFDVHRFTESREEGQYIPICGIKVAHTQGIVAHSDGDVALHALTDALLGCMGE 65
Query: 135 PDIGQIFPDSDPKWKGAPSSVFIKEA 160
IGQ FP+SDP+WK A SS F+ EA
Sbjct: 66 GSIGQHFPNSDPQWKNASSSYFLLEA 91
>TIGR_CMR|CHY_2341 [details] [associations]
symbol:CHY_2341 "2C-methyl-D-erythritol
2,4-cyclodiphosphate synthase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0008685 "2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase activity" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] HAMAP:MF_00107
InterPro:IPR003526 InterPro:IPR020555 Pfam:PF02542 PROSITE:PS01350
UniPathway:UPA00056 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0016114 GO:GO:0019288
eggNOG:COG0245 GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770 OMA:HKFGGEG
RefSeq:YP_361146.1 ProteinModelPortal:Q3A9N8 SMR:Q3A9N8
STRING:Q3A9N8 GeneID:3727798 KEGG:chy:CHY_2341 PATRIC:21277749
BioCyc:CHYD246194:GJCN-2340-MONOMER Uniprot:Q3A9N8
Length = 163
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 39/81 (48%), Positives = 55/81 (67%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+G G+D+H L G LIIGG+ +P +G HSD DVL H + DA LG+L L DIGQ+F
Sbjct: 4 RIGFGYDVHPLVEGRKLIIGGVEIPFTKGLLGHSDADVLYHAIADAFLGSLALGDIGQLF 63
Query: 142 PDSDPKWKGAPSSVFIKEAVR 162
PD+D +++G S + ++E R
Sbjct: 64 PDNDERYRGIDSGLLLQEVYR 84
>TIGR_CMR|CPS_1073 [details] [associations]
symbol:CPS_1073 "2C-methyl-D-erythritol
2,4-cyclodiphosphate synthase" species:167879 "Colwellia
psychrerythraea 34H" [GO:0008685 "2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase activity" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] HAMAP:MF_00107
InterPro:IPR003526 InterPro:IPR020555 Pfam:PF02542 PROSITE:PS01350
UniPathway:UPA00056 GO:GO:0046872 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016114 GO:GO:0019288
eggNOG:COG0245 GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770 OMA:HKFGGEG
RefSeq:YP_267817.1 ProteinModelPortal:Q487E8 SMR:Q487E8
STRING:Q487E8 GeneID:3522077 KEGG:cps:CPS_1073 PATRIC:21465417
BioCyc:CPSY167879:GI48-1155-MONOMER Uniprot:Q487E8
Length = 170
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+GHGFD+H+ PL++GG+ +P E G AHSDGDV +H + DAILGAL L DIG F
Sbjct: 2 RIGHGFDVHKFGGKGPLVLGGVKIPFELGFIAHSDGDVAIHALCDAILGALCLADIGNHF 61
Query: 142 PDSDPKWKGAPSSVFIKEAV 161
PD+D +++ S + ++ V
Sbjct: 62 PDTDGQYENISSRILLRHVV 81
>TIGR_CMR|DET_0060 [details] [associations]
symbol:DET_0060 "2C-methyl-D-erythritol
2,4-cyclodiphosphate synthase" species:243164 "Dehalococcoides
ethenogenes 195" [GO:0008685 "2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase activity" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] HAMAP:MF_00107
InterPro:IPR003526 InterPro:IPR020555 Pfam:PF02542 PROSITE:PS01350
UniPathway:UPA00056 GO:GO:0046872 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016114 GO:GO:0019288
eggNOG:COG0245 GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770 OMA:HKFGGEG
ProtClustDB:PRK00084 RefSeq:YP_180813.1 ProteinModelPortal:Q3ZAD6
STRING:Q3ZAD6 GeneID:3229030 KEGG:det:DET0060 PATRIC:21607219
BioCyc:DETH243164:GJNF-60-MONOMER Uniprot:Q3ZAD6
Length = 157
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 40/80 (50%), Positives = 55/80 (68%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+G+G+D+HRL PG L++GG+ +P E G SD DVL H ++D++LGA L DIG F
Sbjct: 2 RIGNGYDVHRLAPGQKLVLGGVEIPFECGLIGWSDADVLTHAIMDSLLGAAALGDIGLYF 61
Query: 142 PDSDPKWKGAPSSVFIKEAV 161
P DPK+KG SS+ + E V
Sbjct: 62 PPGDPKFKGI-SSLKLLEQV 80
>TIGR_CMR|CJE_1779 [details] [associations]
symbol:CJE_1779 "ispD/ispF bifunctional enzyme"
species:195099 "Campylobacter jejuni RM1221" [GO:0008685
"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"
evidence=ISS] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=ISS] [GO:0050518
"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"
evidence=ISS] HAMAP:MF_01520 InterPro:IPR001228 InterPro:IPR003526
InterPro:IPR018294 InterPro:IPR020555 Pfam:PF01128 Pfam:PF02542
PROSITE:PS01295 PROSITE:PS01350 UniPathway:UPA00056 GO:GO:0046872
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0016114 GO:GO:0019288
RefSeq:YP_179751.1 ProteinModelPortal:Q5HSI4 SMR:Q5HSI4
STRING:Q5HSI4 GeneID:3232406 KEGG:cjr:CJE1779 PATRIC:20045368
eggNOG:COG0245 HOGENOM:HOG000252034 KO:K12506 OMA:DGDIGSH
ProtClustDB:PRK09382 BioCyc:CJEJ195099:GJC0-1809-MONOMER
GO:GO:0008685 GO:GO:0050518 Gene3D:3.30.1330.50 InterPro:IPR026596
SUPFAM:SSF69765 TIGRFAMs:TIGR00453 TIGRFAMs:TIGR00151
Uniprot:Q5HSI4
Length = 371
Score = 208 (78.3 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 84 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPD 143
G+GFD+H PL++ G+ + G +AHSDGDVL H + DAILGA GL DIG+++PD
Sbjct: 213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPD 272
Query: 144 SDPKWKGAPSSVFIKEA 160
+D K+K A S +K+A
Sbjct: 273 TDMKFKNANSMELLKQA 289
>UNIPROTKB|P65183 [details] [associations]
symbol:ispF "2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase" species:1773 "Mycobacterium tuberculosis" [GO:0008685
"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0051483
"terpenoid biosynthetic process, mevalonate-independent"
evidence=IDA] HAMAP:MF_00107 InterPro:IPR003526 InterPro:IPR020555
Pfam:PF02542 PROSITE:PS01350 UniPathway:UPA00056 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0046872 EMBL:BX842583 GO:GO:0019288 eggNOG:COG0245
GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770
ProtClustDB:PRK00084 PIR:C70607 RefSeq:NP_218098.1
RefSeq:NP_338231.1 RefSeq:YP_006517071.1 ProteinModelPortal:P65183
SMR:P65183 PRIDE:P65183 EnsemblBacteria:EBMYCT00000002757
EnsemblBacteria:EBMYCT00000071987 GeneID:13317190 GeneID:888221
GeneID:926534 KEGG:mtc:MT3687 KEGG:mtu:Rv3581c KEGG:mtv:RVBD_3581c
PATRIC:18129863 TubercuList:Rv3581c OMA:GYGEDSH GO:GO:0051483
Uniprot:P65183
Length = 159
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 38/83 (45%), Positives = 52/83 (62%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
LP RVG G D+H +EPG P + G+ P GC HSDGDV +H + DA+L A GL DIG
Sbjct: 4 LP-RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIG 62
Query: 139 QIFPDSDPKWKGAPSSVFIKEAV 161
++F DP+W+G + ++ V
Sbjct: 63 EVFGVDDPRWQGVSGADMLRHVV 85
>TIGR_CMR|NSE_0134 [details] [associations]
symbol:NSE_0134 "2C-methyl-D-erythritol
2,4-cyclodiphosphate synthase" species:222891 "Neorickettsia
sennetsu str. Miyayama" [GO:0008685 "2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase activity" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] HAMAP:MF_00107
InterPro:IPR003526 InterPro:IPR020555 Pfam:PF02542 PROSITE:PS01350
UniPathway:UPA00056 GO:GO:0046872 GO:GO:0016114 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0019288 eggNOG:COG0245
GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770 OMA:HKFGGEG
RefSeq:YP_506034.1 ProteinModelPortal:Q2GER2 STRING:Q2GER2
GeneID:3931795 KEGG:nse:NSE_0134 PATRIC:22680373
ProtClustDB:CLSK2528087 BioCyc:NSEN222891:GHFU-170-MONOMER
Uniprot:Q2GER2
Length = 168
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 42/89 (47%), Positives = 60/89 (67%)
Query: 81 FRVGHGFDLHRLE-P---GYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGAL--- 132
+RVG G+D+H+++ P G +++ G++VP E AHSDGDV LH +VDA+LGA
Sbjct: 2 YRVGFGYDVHKIDKPVKTGNTCIVLCGVSVPCEYKVIAHSDGDVALHALVDALLGAACIE 61
Query: 133 GLPDIGQIFPDSDPKWKGAPSSVFIKEAV 161
G DIG +FPD+D KW+G SS F++ V
Sbjct: 62 GANDIGMLFPDTDEKWRGKSSSYFVEHVV 90
>GENEDB_PFALCIPARUM|PFB0420w [details] [associations]
symbol:PFB0420w "2C-methyl-D-erythritol
2,4-cyclodiphosphate synthase" species:5833 "Plasmodium falciparum"
[GO:0020011 "apicoplast" evidence=IDA] InterPro:IPR003526
InterPro:IPR020555 Pfam:PF02542 PROSITE:PS01350 UniPathway:UPA00056
GO:GO:0016114 EMBL:AE001362 GenomeReviews:AE001362_GR GO:GO:0019288
GO:GO:0020011 GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770 BRENDA:4.6.1.12
PIR:B71615 RefSeq:XP_001349603.1 ProteinModelPortal:P62368
IntAct:P62368 MINT:MINT-1708282 EnsemblProtists:PFB0420w:mRNA
GeneID:812685 KEGG:pfa:PFB0420w EuPathDB:PlasmoDB:PF3D7_0209300
OMA:ECFANIL ProtClustDB:CLSZ2432021 Uniprot:P62368
Length = 240
Score = 151 (58.2 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 88 DLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDP 146
D ++ E + L +GG+ + + +HSDGD++ H +VD+ILGALG DIG +FPD D
Sbjct: 89 DFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDE 147
Query: 147 KWKGAPSSVFIKEA 160
K K S++F++ A
Sbjct: 148 KNKNKNSAIFLRYA 161
Score = 44 (20.5 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 5/12 (41%), Positives = 11/12 (91%)
Query: 82 RVGHGFDLHRLE 93
R+G G+D+H+++
Sbjct: 65 RIGQGYDIHKIK 76
>UNIPROTKB|P62368 [details] [associations]
symbol:ISPF "2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase" species:36329 "Plasmodium falciparum 3D7" [GO:0020011
"apicoplast" evidence=IDA] InterPro:IPR003526 InterPro:IPR020555
Pfam:PF02542 PROSITE:PS01350 UniPathway:UPA00056 GO:GO:0016114
EMBL:AE001362 GenomeReviews:AE001362_GR GO:GO:0019288 GO:GO:0020011
GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770 BRENDA:4.6.1.12
PIR:B71615 RefSeq:XP_001349603.1 ProteinModelPortal:P62368
IntAct:P62368 MINT:MINT-1708282 EnsemblProtists:PFB0420w:mRNA
GeneID:812685 KEGG:pfa:PFB0420w EuPathDB:PlasmoDB:PF3D7_0209300
OMA:ECFANIL ProtClustDB:CLSZ2432021 Uniprot:P62368
Length = 240
Score = 151 (58.2 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 88 DLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDP 146
D ++ E + L +GG+ + + +HSDGD++ H +VD+ILGALG DIG +FPD D
Sbjct: 89 DFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDE 147
Query: 147 KWKGAPSSVFIKEA 160
K K S++F++ A
Sbjct: 148 KNKNKNSAIFLRYA 161
Score = 44 (20.5 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 5/12 (41%), Positives = 11/12 (91%)
Query: 82 RVGHGFDLHRLE 93
R+G G+D+H+++
Sbjct: 65 RIGQGYDIHKIK 76
>TIGR_CMR|ECH_0156 [details] [associations]
symbol:ECH_0156 "2C-methyl-D-erythritol
2,4-cyclodiphosphate synthase" species:205920 "Ehrlichia
chaffeensis str. Arkansas" [GO:0008685 "2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase activity" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] HAMAP:MF_00107
InterPro:IPR003526 InterPro:IPR020555 Pfam:PF02542 PROSITE:PS01350
UniPathway:UPA00056 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0016114 GO:GO:0019288
eggNOG:COG0245 GO:GO:0008685 Gene3D:3.30.1330.50 SUPFAM:SSF69765
TIGRFAMs:TIGR00151 HOGENOM:HOG000239175 KO:K01770
ProtClustDB:CLSK749413 OMA:HKFGGEG RefSeq:YP_506983.1
ProteinModelPortal:Q2GHV0 SMR:Q2GHV0 STRING:Q2GHV0 GeneID:3928067
KEGG:ech:ECH_0156 PATRIC:20575853
BioCyc:ECHA205920:GJNR-156-MONOMER Uniprot:Q2GHV0
Length = 173
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 38/86 (44%), Positives = 52/86 (60%)
Query: 81 FRVGHGFDLHRLEPG-YP-----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGL 134
F+VG G+D+H+ + Y + I GI + + + AHSDGDV LH + DAILGA+G
Sbjct: 10 FKVGIGYDVHKFDNTCYNDANTFITICGIKINYHKKIIAHSDGDVGLHALTDAILGAVGC 69
Query: 135 PDIGQIFPDSDPKWKGAPSSVFIKEA 160
IGQ FP++D WK S F+ EA
Sbjct: 70 GSIGQHFPNTDNTWKNIKSDYFLIEA 95
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 196 156 0.00073 106 3 11 22 0.48 31
30 0.42 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 598 (64 KB)
Total size of DFA: 153 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.43u 0.22s 11.65t Elapsed: 00:00:01
Total cpu time: 11.44u 0.22s 11.66t Elapsed: 00:00:01
Start: Fri May 10 12:37:35 2013 End: Fri May 10 12:37:36 2013