BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029267
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PMP|A Chain A, Structure Of 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate
Synthase From The Isoprenoid Biosynthetic Pathway Of
Arabidopsis Thaliana
Length = 160
Score = 173 bits (438), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 79/84 (94%), Positives = 82/84 (97%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
LPFR+GHGFDLHRLEPGYPLIIGGI +PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIG
Sbjct: 2 LPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIG 61
Query: 139 QIFPDSDPKWKGAPSSVFIKEAVR 162
QIFPDSDPKWKGA SSVFIKEAVR
Sbjct: 62 QIFPDSDPKWKGAASSVFIKEAVR 85
>pdb|3F0D|A Chain A, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|B Chain B, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|C Chain C, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|D Chain D, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|E Chain E, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|F Chain F, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0E|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei
pdb|3F0E|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei
pdb|3F0E|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei
pdb|3F0F|A Chain A, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Hydrolyzed Cdp
pdb|3F0F|B Chain B, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Hydrolyzed Cdp
pdb|3F0F|C Chain C, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Hydrolyzed Cdp
pdb|3F0G|A Chain A, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|B Chain B, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|C Chain C, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|D Chain D, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|E Chain E, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|F Chain F, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3IEQ|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine
pdb|3IEQ|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine
pdb|3IEQ|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine
pdb|3IEW|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Bound Ctp And Cdp
pdb|3IEW|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Bound Ctp And Cdp
pdb|3IEW|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Bound Ctp And Cdp
pdb|3JVH|A Chain A, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Burkholderia Pseudomallei With Fol Fragment 8395
pdb|3JVH|B Chain B, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Burkholderia Pseudomallei With Fol Fragment 8395
pdb|3JVH|C Chain C, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Burkholderia Pseudomallei With Fol Fragment 8395
pdb|3K14|A Chain A, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 535, Ethyl
3-Methyl-5,6-Dihydroimidazo[2,1-B][1,
3]thiazole-2-Carboxylate
pdb|3K14|B Chain B, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 535, Ethyl
3-Methyl-5,6-Dihydroimidazo[2,1-B][1,
3]thiazole-2-Carboxylate
pdb|3K14|C Chain C, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 535, Ethyl
3-Methyl-5,6-Dihydroimidazo[2,1-B][1,
3]thiazole-2-Carboxylate
pdb|3K2X|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With 5'-Iodo- Cytosine
pdb|3K2X|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With 5'-Iodo- Cytosine
pdb|3K2X|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With 5'-Iodo- Cytosine
pdb|3KE1|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With A Fragment- Nucleoside
Fusion D000161829
pdb|3KE1|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With A Fragment- Nucleoside
Fusion D000161829
pdb|3KE1|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With A Fragment- Nucleoside
Fusion D000161829
pdb|3MBM|A Chain A, Crystal Structure Of 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine And Fol Fragment 717,
Imidazo[2,1-b][1,3]thiazol-6-ylmethanol
pdb|3MBM|B Chain B, Crystal Structure Of 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine And Fol Fragment 717,
Imidazo[2,1-b][1,3]thiazol-6-ylmethanol
pdb|3MBM|C Chain C, Crystal Structure Of 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine And Fol Fragment 717,
Imidazo[2,1-b][1,3]thiazol-6-ylmethanol
pdb|3P0Z|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol955, 4-
(1h-Imidazol)-1-Yl)phenol
pdb|3P0Z|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol955, 4-
(1h-Imidazol)-1-Yl)phenol
pdb|3P0Z|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol955, 4-
(1h-Imidazol)-1-Yl)phenol
pdb|3P10|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol694, 2-
(Thiophen-2-Yl)phenyl Methanol
pdb|3P10|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol694, 2-
(Thiophen-2-Yl)phenyl Methanol
pdb|3P10|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol694, 2-
(Thiophen-2-Yl)phenyl Methanol
pdb|3Q8H|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With Cytidine Derivative
Ebsi01028
pdb|3Q8H|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With Cytidine Derivative
Ebsi01028
pdb|3Q8H|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With Cytidine Derivative
Ebsi01028
pdb|3QHD|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei Bound To Cytidine, Fol795 And Fol955
pdb|3QHD|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei Bound To Cytidine, Fol795 And Fol955
pdb|3QHD|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei Bound To Cytidine, Fol795 And Fol955
Length = 183
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 60/81 (74%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
+ FR+G G+D+H+L PG PLIIGG+ +P+ERG HSD DVLLH + DA+ GA L DIG
Sbjct: 22 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIG 81
Query: 139 QIFPDSDPKWKGAPSSVFIKE 159
+ F D+DP++KGA S ++E
Sbjct: 82 RHFSDTDPRFKGADSRALLRE 102
>pdb|3IKE|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine
pdb|3IKE|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine
pdb|3IKE|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine
pdb|3IKF|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 717,
Imidazo[2,,1-B][1,3]thiazol-6-Ylmethanol
pdb|3IKF|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 717,
Imidazo[2,,1-B][1,3]thiazol-6-Ylmethanol
pdb|3IKF|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 717,
Imidazo[2,,1-B][1,3]thiazol-6-Ylmethanol
Length = 166
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 60/81 (74%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
+ FR+G G+D+H+L PG PLIIGG+ +P+ERG HSD DVLLH + DA+ GA L DIG
Sbjct: 5 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIG 64
Query: 139 QIFPDSDPKWKGAPSSVFIKE 159
+ F D+DP++KGA S ++E
Sbjct: 65 RHFSDTDPRFKGADSRALLRE 85
>pdb|3F6M|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase Ispf From Yersinia Pestis
pdb|3FPI|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase Ispf Complexed With Cytidine
Triphosphate
Length = 165
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 62/83 (74%), Gaps = 2/83 (2%)
Query: 82 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQ 139
R+GHGFD+H+ E G PLIIGG+ +P+E+G AHSDGDV LH DA+LGA L DIG+
Sbjct: 5 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGK 64
Query: 140 IFPDSDPKWKGAPSSVFIKEAVR 162
+FPD+DP +KGA S ++EA R
Sbjct: 65 LFPDTDPAFKGADSRGLLREAYR 87
>pdb|1IV1|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
Length = 152
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 58/82 (70%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
R+G+G D HRLE G PL + G+ +P G AHSDGD LH + DA+L A GL DIG +
Sbjct: 1 MRIGYGEDSHRLEEGRPLYLCGLLIPSPVGALAHSDGDAALHALTDALLSAYGLGDIGLL 60
Query: 141 FPDSDPKWKGAPSSVFIKEAVR 162
FPD+DP+W+G S VF++EA+R
Sbjct: 61 FPDTDPRWRGERSEVFLREALR 82
>pdb|1VH8|A Chain A, Crystal Structure Of A 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase
pdb|1VH8|B Chain B, Crystal Structure Of A 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase
pdb|1VH8|C Chain C, Crystal Structure Of A 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase
pdb|1VH8|D Chain D, Crystal Structure Of A 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase
pdb|1VH8|E Chain E, Crystal Structure Of A 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase
pdb|1VH8|F Chain F, Crystal Structure Of A 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase
pdb|1VHA|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase
pdb|1VHA|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase
pdb|1VHA|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase
pdb|1VHA|D Chain D, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase
pdb|1VHA|E Chain E, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase
pdb|1VHA|F Chain F, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase
Length = 170
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 57/82 (69%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
R+GHGFD+H PLIIGG+ VP+ G AHSDGDV LH + DAILGA L DIG++
Sbjct: 4 IRIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKL 63
Query: 141 FPDSDPKWKGAPSSVFIKEAVR 162
FPD+D ++K A S ++EA R
Sbjct: 64 FPDTDXQYKNADSRGLLREAFR 85
>pdb|1JN1|A Chain A, Structure Of 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate
Synthase From Haemophilus Influenzae (Hi0671)
pdb|1JN1|B Chain B, Structure Of 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate
Synthase From Haemophilus Influenzae (Hi0671)
pdb|1JN1|C Chain C, Structure Of 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate
Synthase From Haemophilus Influenzae (Hi0671)
Length = 158
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 57/82 (69%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
R+GHGFD+H PLIIGG+ VP+ G AHSDGDV LH + DAILGA L DIG++
Sbjct: 2 IRIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKL 61
Query: 141 FPDSDPKWKGAPSSVFIKEAVR 162
FPD+D ++K A S ++EA R
Sbjct: 62 FPDTDMQYKNADSRGLLREAFR 83
>pdb|1IV2|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV3|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV4|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
Length = 152
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 58/82 (70%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
R+G+G D HRLE G PL + G+ +P G AHSDGD +H + DA+L A GL DIG +
Sbjct: 1 MRIGYGEDSHRLEEGRPLYLCGLLIPSPVGALAHSDGDAAMHALTDALLSAYGLGDIGLL 60
Query: 141 FPDSDPKWKGAPSSVFIKEAVR 162
FPD+DP+W+G S VF++EA+R
Sbjct: 61 FPDTDPRWRGERSEVFLREAMR 82
>pdb|1T0A|A Chain A, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Shewanella Oneidensis
pdb|1T0A|B Chain B, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Shewanella Oneidensis
pdb|1T0A|C Chain C, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Shewanella Oneidensis
Length = 159
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
+ R+GHGFD+H+ PLI+ G+ VP+E G AHSDGDV+LH + DAILGA L DIG
Sbjct: 1 MKIRIGHGFDVHKFGEPRPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAXALGDIG 60
Query: 139 QIFPDSDPKWKGAPSSVFIK 158
+ FPD+D +KGA S V ++
Sbjct: 61 KHFPDTDAAYKGADSRVLLR 80
>pdb|3RE3|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Francisella
Tularensis
pdb|3RE3|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Francisella
Tularensis
pdb|3RE3|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Francisella
Tularensis
pdb|3RE3|D Chain D, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Francisella
Tularensis
Length = 162
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 80 PFRVGHGFDLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
FR+GHG+D+H+ +IIGG+ + + G EAHSDGDVL+H + DAILGALGL DIG
Sbjct: 5 SFRIGHGYDVHKFTSAKQNIIIGGVEIAYHLGLEAHSDGDVLIHALCDAILGALGLGDIG 64
Query: 139 QIFPDSDPKWKGAPSSVFIKE 159
+ F D+D ++K S F+ E
Sbjct: 65 KHFLDTDNQFKNIDSKFFLAE 85
>pdb|1H47|A Chain A, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|B Chain B, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|C Chain C, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|D Chain D, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|E Chain E, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|F Chain F, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H48|A Chain A, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|B Chain B, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|C Chain C, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|D Chain D, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|E Chain E, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|F Chain F, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
Length = 161
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 61/84 (72%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
L R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG
Sbjct: 1 LEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIG 60
Query: 139 QIFPDSDPKWKGAPSSVFIKEAVR 162
++FPD+DP +KGA S ++EA R
Sbjct: 61 KLFPDTDPAFKGADSRELLREAWR 84
>pdb|3ELC|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3ELC|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3ELC|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3EOR|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3ERN|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|D Chain D, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|E Chain E, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|F Chain F, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ESJ|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3FBA|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Clycodiphosphate Synthase Complexed With Ligand
Length = 165
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 61/84 (72%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
L R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG
Sbjct: 5 LEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIG 64
Query: 139 QIFPDSDPKWKGAPSSVFIKEAVR 162
++FPD+DP +KGA S ++EA R
Sbjct: 65 KLFPDTDPAFKGADSRELLREAWR 88
>pdb|2GZL|A Chain A, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
Length = 159
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 61/84 (72%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
L R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG
Sbjct: 1 LEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIG 60
Query: 139 QIFPDSDPKWKGAPSSVFIKEAVR 162
++FPD+DP +KGA S ++EA R
Sbjct: 61 KLFPDTDPAFKGADSRELLREAWR 84
>pdb|3GHZ|A Chain A, 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From
Salmonella Typhimurium
pdb|3GHZ|B Chain B, 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From
Salmonella Typhimurium
pdb|3GHZ|C Chain C, 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From
Salmonella Typhimurium
pdb|3T80|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|D Chain D, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|E Chain E, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|F Chain F, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
Length = 162
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 60/82 (73%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++
Sbjct: 4 MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKL 63
Query: 141 FPDSDPKWKGAPSSVFIKEAVR 162
FPD+DP +KGA S ++EA R
Sbjct: 64 FPDTDPAFKGADSRELLREAWR 85
>pdb|1YQN|A Chain A, E. Coli Ispf Double Mutant
Length = 161
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 60/82 (73%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++
Sbjct: 3 MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKL 62
Query: 141 FPDSDPKWKGAPSSVFIKEAVR 162
FPD+DP +KGA S ++EA R
Sbjct: 63 FPDTDPAFKGADSRELLREAWR 84
>pdb|1JY8|A Chain A, 2c-methyl-d-erythritol 2,4-cyclodiphosphate Synthase
(ispf)
pdb|1KNK|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase (Ispf) From E. Coli
Involved In Mevalonate-Independent Isoprenoid
Biosynthesis
pdb|1U3L|A Chain A, Ispf With Mg And Cdp
pdb|1U3P|A Chain A, Ispf Native
pdb|1U40|A Chain A, Ispf With 4-Diphosphocytidyl-2c-Methyl-D-Erythritol
pdb|1U43|A Chain A, Ispf With 4-Diphosphocytidyl-2c-Methyl-D-Erythritol
2-Phosphate
pdb|2AMT|A Chain A, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|B Chain B, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|C Chain C, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|D Chain D, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|E Chain E, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|F Chain F, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
Length = 159
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 60/82 (73%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++
Sbjct: 1 MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKL 60
Query: 141 FPDSDPKWKGAPSSVFIKEAVR 162
FPD+DP +KGA S ++EA R
Sbjct: 61 FPDTDPAFKGADSRELLREAWR 82
>pdb|1KNJ|A Chain A, Co-Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase (Ispf) From E. Coli
Involved In Mevalonate-Independent Isoprenoid
Biosynthesis, Complexed With CmpMECDPMN2+
Length = 159
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++F
Sbjct: 2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLF 61
Query: 142 PDSDPKWKGAPSSVFIKEAVR 162
PD+DP +KGA S ++EA R
Sbjct: 62 PDTDPAFKGADSRELLREAWR 82
>pdb|1GX1|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1GX1|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1GX1|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
Length = 160
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++F
Sbjct: 3 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLF 62
Query: 142 PDSDPKWKGAPSSVFIKEAVR 162
PD+DP +KGA S ++EA R
Sbjct: 63 PDTDPAFKGADSRELLREAWR 83
>pdb|1W55|A Chain A, Structure Of The Bifunctional Ispdf From Campylobacter
Jejuni
pdb|1W57|A Chain A, Structure Of The Bifunctional Ispdf From Campylobacter
Jejuni Containing Zn
Length = 371
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 84 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPD 143
G+GFD+H PL++ G+ + G +AHSDGDVL H + DAILGA GL DIG+++PD
Sbjct: 213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPD 272
Query: 144 SDPKWKGAPSSVFIKEA 160
+D K+K A S +K+A
Sbjct: 273 TDMKFKNANSMELLKQA 289
>pdb|2UZH|A Chain A, Mycobacterium Smegmatis 2c-Methyl-D-Erythritol-2,4-
Cyclodiphosphate Synthase (Ispf)
pdb|2UZH|B Chain B, Mycobacterium Smegmatis 2c-Methyl-D-Erythritol-2,4-
Cyclodiphosphate Synthase (Ispf)
pdb|2UZH|C Chain C, Mycobacterium Smegmatis 2c-Methyl-D-Erythritol-2,4-
Cyclodiphosphate Synthase (Ispf)
Length = 165
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
RVG G D+H +E G P + + GC HSDGDV H + DA+L A GL D+G IF
Sbjct: 7 RVGLGTDVHPIEAGRPCRLLCLEFDDADGCAGHSDGDVAAHALCDALLSAAGLGDLGTIF 66
Query: 142 PDSDPKWKGAPSSVFIK 158
P+W+GA + I+
Sbjct: 67 GTDRPQWRGASGADMIR 83
>pdb|3B6N|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase Pv003920 From Plasmodium Vivax
Length = 187
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 26/104 (25%)
Query: 82 RVGHGFDLHRLEPGYP-------------------------LIIGGINVPHERGCEAHSD 116
R+G G+D+H++ G P L IGG+ V +HSD
Sbjct: 6 RIGQGYDIHQIRVGPPEDIVADTTADTAANTADPNKQSFKRLTIGGVPV-ETISVLSHSD 64
Query: 117 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 160
GDV+ H +VDA+LG + D+G +FPD PK+K S F++ A
Sbjct: 65 GDVIFHALVDALLGGMSCSDLGTLFPDGSPKYKNKNSLSFLRYA 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,696,900
Number of Sequences: 62578
Number of extensions: 159799
Number of successful extensions: 273
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 21
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)