Query 029267
Match_columns 196
No_of_seqs 132 out of 1043
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 10:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02862 2-C-methyl-D-erythrit 100.0 1E-49 2.2E-54 340.7 15.5 129 55-185 36-165 (216)
2 PRK00084 ispF 2-C-methyl-D-ery 100.0 3.3E-48 7.2E-53 318.4 12.4 107 79-185 1-108 (159)
3 TIGR00151 ispF 2C-methyl-D-ery 100.0 3.2E-47 6.9E-52 311.5 12.0 104 82-185 1-105 (155)
4 cd00554 MECDP_synthase MECDP_s 100.0 6.5E-47 1.4E-51 309.0 12.1 104 82-185 1-105 (153)
5 PF02542 YgbB: YgbB family; I 100.0 1.5E-47 3.3E-52 313.9 8.1 105 81-185 1-106 (157)
6 COG0245 IspF 2C-methyl-D-eryth 100.0 3E-46 6.4E-51 307.6 11.4 104 81-184 1-105 (159)
7 PRK09382 ispDF bifunctional 2- 100.0 1.9E-43 4.2E-48 316.9 13.4 106 80-185 217-323 (378)
8 cd08574 GDPD_GDE_2_3_6 Glycero 50.6 24 0.00052 30.1 4.0 86 84-176 32-135 (252)
9 smart00267 GGDEF diguanylate c 42.6 1.2E+02 0.0026 21.4 6.8 79 97-179 34-128 (163)
10 cd07044 CofD_YvcK Family of Co 31.3 41 0.00089 30.7 2.6 19 109-127 79-97 (309)
11 PF02338 OTU: OTU-like cystein 31.0 33 0.00071 25.2 1.6 19 115-133 2-20 (121)
12 PF07346 DUF1477: Protein of u 29.8 28 0.00062 28.2 1.2 21 110-130 91-111 (118)
13 cd08580 GDPD_Rv2277c_like Glyc 26.9 1.4E+02 0.003 26.3 5.0 82 84-176 31-114 (263)
14 PF03010 GP4: GP4; InterPro: 24.9 18 0.00039 30.1 -0.7 20 177-196 86-106 (152)
15 KOG3527 Erythrocyte membrane p 24.6 31 0.00068 36.4 0.7 28 107-135 931-960 (975)
16 PRK09894 diguanylate cyclase; 24.2 4.1E+02 0.0089 21.9 7.6 82 94-179 155-253 (296)
17 PRK00945 acetyl-CoA decarbonyl 23.9 31 0.00066 29.2 0.4 35 155-189 120-164 (171)
18 PRK09454 ugpQ cytoplasmic glyc 23.2 2.5E+02 0.0055 23.7 5.8 80 84-176 38-117 (249)
No 1
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=100.00 E-value=1e-49 Score=340.71 Aligned_cols=129 Identities=65% Similarity=1.118 Sum_probs=117.4
Q ss_pred cccccccccccCCcccccCCCCCCCceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCC
Q 029267 55 SAAATSSIEVKESSASIQPSKSKSLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGL 134 (196)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~m~~RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~gl 134 (196)
+++++++.+++... ...+..+.|+||||+|||+|+|+++||||||||+||+++||.|||||||++||||||||||+|+
T Consensus 36 ~~~~~~~~~~~~~~--~~~~~~~~~~~RvG~G~DvH~~~~gr~LiLGGV~Ip~~~Gl~gHSDgDVllHAi~DALLGA~gl 113 (216)
T PLN02862 36 TAAASTTAEVENAL--TPSKAAPTLPFRVGHGFDLHRLEPGLPLIIGGIDIPHDRGCEAHSDGDVLLHCVVDAILGALGL 113 (216)
T ss_pred cccccceeeeeccc--CCcccCccCceeEEEeEEccccCCCCcEEEeeEEeCCCCCcCccCHHHHHHHHHHHHHHHHccC
Confidence 44445555555544 5566666788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCcCCCCCHHHHHHHHHHHHHhc-CeEEEEEEEeecccchhh
Q 029267 135 PDIGQIFPDSDPKWKGAPSSVFIKEAVRFFFLI-YILIYIEIVMGYSNSMIW 185 (196)
Q Consensus 135 GDIG~~FPdsdpk~Kga~S~~~L~~a~~li~~~-~~iiniDi~i~~~~~~~~ 185 (196)
||||++|||+||+|||++|.+||++++++++++ |.|+|||++|+.-.|||.
T Consensus 114 GDIG~~FPdtd~~~Kg~~S~~lL~~a~~ll~~~G~~I~NvD~tII~q~PKi~ 165 (216)
T PLN02862 114 PDIGQIFPDTDPKWKGADSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLS 165 (216)
T ss_pred CcccccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEcCCCcch
Confidence 999999999999999999999999999999997 999999999999999985
No 2
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=100.00 E-value=3.3e-48 Score=318.37 Aligned_cols=107 Identities=45% Similarity=0.824 Sum_probs=104.4
Q ss_pred CceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHHH
Q 029267 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIK 158 (196)
Q Consensus 79 m~~RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L~ 158 (196)
|++|||+|||+|||+++|||+||||+||+++|+.|||||||++||||||||||+|+||||++||++||+|||++|..||+
T Consensus 1 m~~RiG~G~D~H~~~~~r~l~LGGV~i~~~~gl~gHSDgDVl~HAi~DAlLGA~glgDIG~~Fp~td~~~kg~~S~~lL~ 80 (159)
T PRK00084 1 MMMRIGQGFDVHRFGEGRPLILGGVEIPYEKGLLGHSDGDVLLHAICDALLGAAALGDIGKHFPDTDPAFKGADSRVLLR 80 (159)
T ss_pred CCceEEEeEEcccccCCCcEEEEeEEeCCCCCCcccCHHHHHHHHHHHHHHHHccCCchhhhCCCCChhhCCCCHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CeEEEEEEEeecccchhh
Q 029267 159 EAVRFFFLI-YILIYIEIVMGYSNSMIW 185 (196)
Q Consensus 159 ~a~~li~~~-~~iiniDi~i~~~~~~~~ 185 (196)
+++++++++ |.++|||++|+.-.|||.
T Consensus 81 ~~~~~~~~~g~~i~niD~tii~e~PKi~ 108 (159)
T PRK00084 81 EVARLLRAKGYRIGNVDITIIAQRPKMA 108 (159)
T ss_pred HHHHHHHHcCCEEEEEEEEEEcCCCcch
Confidence 999999997 899999999999999984
No 3
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=100.00 E-value=3.2e-47 Score=311.52 Aligned_cols=104 Identities=52% Similarity=0.967 Sum_probs=102.2
Q ss_pred eEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHHHHHH
Q 029267 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAV 161 (196)
Q Consensus 82 RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L~~a~ 161 (196)
|||+|||+|||+++||||||||+||+++|+.|||||||++|||+||||||+|+||||++|||+||+|||++|..||++++
T Consensus 1 RvG~G~D~H~~~~~r~l~LgGV~ip~~~Gl~gHSDgDVl~HAi~DAlLGA~glgDIG~~Fpdtd~~~k~~~S~~lL~~~~ 80 (155)
T TIGR00151 1 RIGQGFDVHRFGPGRPLILGGVEIPHEKGLLAHSDGDVLLHALTDALLGALGLGDIGKHFPDTDPRWKGADSRVLLRHAV 80 (155)
T ss_pred CcEeeEeccccCCCCcEEEeeEEeCCCCCCcccCHHHHHHHHHHHHHHHHccCCcCcccCCCCChhhCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CeEEEEEEEeecccchhh
Q 029267 162 RFFFLI-YILIYIEIVMGYSNSMIW 185 (196)
Q Consensus 162 ~li~~~-~~iiniDi~i~~~~~~~~ 185 (196)
++++++ |.|+|||++|+.-.|||.
T Consensus 81 ~~~~~~g~~i~niD~tii~e~PKi~ 105 (155)
T TIGR00151 81 ALIKEKGYRIGNVDITIIAQRPKLL 105 (155)
T ss_pred HHHHHcCCEEEEEEEEEEcCCCcch
Confidence 999996 999999999999999985
No 4
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=100.00 E-value=6.5e-47 Score=308.99 Aligned_cols=104 Identities=50% Similarity=0.932 Sum_probs=102.2
Q ss_pred eEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHHHHHH
Q 029267 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAV 161 (196)
Q Consensus 82 RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L~~a~ 161 (196)
|||+|||+|||+++||||||||+||+++|+.|||||||++||||||||||+++||||++|||+||+|||++|..||++++
T Consensus 1 RvG~G~D~H~~~~~r~l~LgGV~i~~~~gl~gHSDgDVl~HAl~DAlLGA~glgDIG~~Fp~~d~~~k~~~S~~lL~~~~ 80 (153)
T cd00554 1 RIGIGYDVHRFVEGRPLILGGVEIPHEKGLLGHSDGDVLLHALTDALLGAAGLGDIGEHFPDTDPKWKGADSRILLEEAL 80 (153)
T ss_pred CcEeeEeccccCCCCCEEEeeEEeCCCCCCcccCHHHHHHHHHHHHHHHHccCCcccccCCCCChhhCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CeEEEEEEEeecccchhh
Q 029267 162 RFFFLI-YILIYIEIVMGYSNSMIW 185 (196)
Q Consensus 162 ~li~~~-~~iiniDi~i~~~~~~~~ 185 (196)
++++++ |.++|||++|+.-.|||.
T Consensus 81 ~~~~~~g~~i~niD~tii~e~PKi~ 105 (153)
T cd00554 81 KLIREKGYEIVNIDITIIAERPKIS 105 (153)
T ss_pred HHHHHcCCEEEEEEEEEEecCCcch
Confidence 999998 799999999999999985
No 5
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=100.00 E-value=1.5e-47 Score=313.92 Aligned_cols=105 Identities=50% Similarity=0.907 Sum_probs=99.7
Q ss_pred eeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHHHHH
Q 029267 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 160 (196)
Q Consensus 81 ~RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L~~a 160 (196)
||||+|||+|||+++|+|+||||+||+++|+.|||||||++|||+||||||+++||||+||||+||+|||++|..||+++
T Consensus 1 ~RiG~G~D~H~~~~~r~L~LgGV~ip~~~gl~gHSDgDVl~HAi~DAlLGA~glgDIG~~Fpd~d~~~k~~~S~~lL~~~ 80 (157)
T PF02542_consen 1 MRIGIGYDVHRFVEGRPLILGGVEIPSEKGLEGHSDGDVLLHAIIDALLGAAGLGDIGTHFPDTDPKYKGADSRILLKEV 80 (157)
T ss_dssp EEEEEEEEEEEEEETSEEEETTEEEEESEEEESSSS--HHHHHHHHHHHHHTTS-THHHHSTTTSGGGTTCSHHHHHHHH
T ss_pred CeeEeEEEeeeecCCCCEEEeeEEcCCCCCCcccChHHHHHHHHHHHHHHhccCCcccccCCCCChhhCCCCHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CeEEEEEEEeecccchhh
Q 029267 161 VRFFFLI-YILIYIEIVMGYSNSMIW 185 (196)
Q Consensus 161 ~~li~~~-~~iiniDi~i~~~~~~~~ 185 (196)
+++++++ |.|+|||++|..-.|||.
T Consensus 81 ~~~~~~~g~~i~niD~tii~e~PKi~ 106 (157)
T PF02542_consen 81 VELLREKGYRIVNIDITIIAERPKIS 106 (157)
T ss_dssp HHHHHHTTEEEEEEEEEEESSSSTTG
T ss_pred HHHHHHcCcEEEEEEEEEEcCCCccH
Confidence 9999998 679999999999999984
No 6
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=100.00 E-value=3e-46 Score=307.61 Aligned_cols=104 Identities=50% Similarity=0.926 Sum_probs=102.2
Q ss_pred eeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHHHHH
Q 029267 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 160 (196)
Q Consensus 81 ~RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L~~a 160 (196)
+|||+|||+|+|+++||||||||+||+++|+.|||||||++||||||||||+++||||++||++||+|||++|..||+++
T Consensus 1 ~RiG~G~DvH~~~~g~p~iLgGV~ip~~~Gl~gHSDgDVllHAi~DAllgA~glGDIG~~Fp~~d~~~kgadS~~lL~~~ 80 (159)
T COG0245 1 IRIGLGFDVHRFGEGRPLILGGVEIPHEKGLLGHSDGDVLLHALTDALLGAAGLGDIGKHFPDTDPRWKGADSRILLKEA 80 (159)
T ss_pred CcccccceeeeecCCCcEEEEEEEecCCCCccccChHHHHHHHHHHHHHHhhccCcchhcCCCCCcccCCCchHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CeEEEEEEEeecccchh
Q 029267 161 VRFFFLI-YILIYIEIVMGYSNSMI 184 (196)
Q Consensus 161 ~~li~~~-~~iiniDi~i~~~~~~~ 184 (196)
+++++++ |.++|||++|+...||+
T Consensus 81 ~~~v~~~g~~i~Nvd~tii~~~PK~ 105 (159)
T COG0245 81 VELVREKGYRIGNVDITIIAQRPKL 105 (159)
T ss_pred HHHHHHhCcEEEeEEEEEEEecCcc
Confidence 9999998 79999999999999987
No 7
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=316.92 Aligned_cols=106 Identities=42% Similarity=0.761 Sum_probs=103.9
Q ss_pred ceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHHHH
Q 029267 80 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKE 159 (196)
Q Consensus 80 ~~RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L~~ 159 (196)
.+|||+|||+|+|++||+||||||+||+++|+.|||||||++||||||||||+|+||||+||||+||+|||++|..||++
T Consensus 217 ~~~~g~g~d~h~~~~~~~~~lggv~i~~~~g~~~hsd~dv~~ha~~da~lga~~~gdig~~fp~~d~~~k~~~s~~~l~~ 296 (378)
T PRK09382 217 DIRTGNGFDVHAFEEGDPVTLCGVKIPHDFGLKGHSDADVALHALTDALLGAIGAGDIGEHFPDSDPQWKGAASKILLEH 296 (378)
T ss_pred ceEEEEeeeeeeecCCCCEEEeeEEecCCCCCcccChHHHHHHHHHHHHHHHccCCcCcccCCCCChhhCCCCHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CeEEEEEEEeecccchhh
Q 029267 160 AVRFFFLI-YILIYIEIVMGYSNSMIW 185 (196)
Q Consensus 160 a~~li~~~-~~iiniDi~i~~~~~~~~ 185 (196)
++++++++ |.|+|+|++|..-.|||-
T Consensus 297 ~~~~~~~~~~~~~n~d~~i~~~~pk~~ 323 (378)
T PRK09382 297 AADFVREAGGEIINADVTIIAEAPKIG 323 (378)
T ss_pred HHHHHHHcCCEEEEEEEEEEecCCcch
Confidence 99999997 999999999999999984
No 8
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=50.58 E-value=24 Score=30.12 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=52.4
Q ss_pred EeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHH-----HHHHHHHHHhcCCCCCcccCCCCCC------------
Q 029267 84 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLL-----HCVVDAILGALGLPDIGQIFPDSDP------------ 146 (196)
Q Consensus 84 G~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVll-----HAI~DALLGA~glGDIG~~FPdsdp------------ 146 (196)
|+=+|||.-+.|.++++ |+.-+.-=+++.-.+ -.|.|.=+.-+..=|.|+||..++|
T Consensus 32 ~iE~DV~lTkDg~lVV~------HD~~l~Rtt~~~g~~~~~~~~~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~ 105 (252)
T cd08574 32 GLETDVTISYDGVPFLM------HDRTLRRTTNVADVFPERAHERASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDR 105 (252)
T ss_pred EEEEEEeEccCCcEEEe------CCCcccccCCCCcccccccccchhcCCHHHHhhCCCCCcccCCCccchhcccccchh
Confidence 67889999888887766 444333333332110 0123333444444578899977666
Q ss_pred -cCCCCCHHHHHHHHHHHHHhcCeEEEEEEE
Q 029267 147 -KWKGAPSSVFIKEAVRFFFLIYILIYIEIV 176 (196)
Q Consensus 147 -k~Kga~S~~~L~~a~~li~~~~~iiniDi~ 176 (196)
+|++. ..--|+++++++++.+..+||++=
T Consensus 106 ~~~~~~-~IPtL~evl~~~~~~~~~l~iEiK 135 (252)
T cd08574 106 EEAGNQ-SIPSLAELLRLAKKHNKSVIFDLR 135 (252)
T ss_pred hhcCCC-CCCCHHHHHHHHHHcCCeEEEEec
Confidence 33442 233688999999877677888874
No 9
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=42.61 E-value=1.2e+02 Score=21.38 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=49.7
Q ss_pred CeEEeeeeeCCCC---CCCccChhHHHHHHHHHHHHHhcCCCC---------CcccCCCCCCcCCCCCHHHHHHHHHHHH
Q 029267 97 PLIIGGINVPHER---GCEAHSDGDVLLHCVVDAILGALGLPD---------IGQIFPDSDPKWKGAPSSVFIKEAVRFF 164 (196)
Q Consensus 97 ~LiLGGV~Ip~~~---GL~gHSDGDVllHAI~DALLGA~glGD---------IG~~FPdsdpk~Kga~S~~~L~~a~~li 164 (196)
++.+.-++|+.-. ...|+..+|-++..+++.|--...-.| ++-+++..+. .....++++..+.+
T Consensus 34 ~~~l~~i~i~~~~~~~~~~g~~~~~~~l~~i~~~l~~~~~~~~~~~r~~~~~f~ii~~~~~~----~~~~~~~~~l~~~~ 109 (163)
T smart00267 34 PFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRPGDLLARLGGDEFALLLPETSL----EEAIALAERILQQL 109 (163)
T ss_pred eEEEEEEEccccchhhhccCchhHHHHHHHHHHHHHHhcCCCCEEEEecCceEEEEecCCCH----HHHHHHHHHHHHHH
Confidence 3778888888644 358999999999999999977765543 3344443321 13455666666666
Q ss_pred HhcCe----EEEEEEEeec
Q 029267 165 FLIYI----LIYIEIVMGY 179 (196)
Q Consensus 165 ~~~~~----iiniDi~i~~ 179 (196)
++... .+.+++.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~g~ 128 (163)
T smart00267 110 REPIIIHGIPLYLTISIGV 128 (163)
T ss_pred hCccccCCcEEEEEEEEEE
Confidence 55432 2335555544
No 10
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=31.29 E-value=41 Score=30.72 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=16.1
Q ss_pred CCCCccChhHHHHHHHHHH
Q 029267 109 RGCEAHSDGDVLLHCVVDA 127 (196)
Q Consensus 109 ~GL~gHSDGDVllHAI~DA 127 (196)
..+.||||||.++|++..-
T Consensus 79 ~~l~gh~~GNL~l~~l~~~ 97 (309)
T cd07044 79 NEGLGHSLGNLAIAGXTSI 97 (309)
T ss_pred CCccCCcHHHHHHHHHHHh
Confidence 4589999999999997654
No 11
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=31.03 E-value=33 Score=25.19 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=15.2
Q ss_pred ChhHHHHHHHHHHHHHhcC
Q 029267 115 SDGDVLLHCVVDAILGALG 133 (196)
Q Consensus 115 SDGDVllHAI~DALLGA~g 133 (196)
.||+-++|||++++.+--.
T Consensus 2 gDGnClF~Avs~~l~~~~~ 20 (121)
T PF02338_consen 2 GDGNCLFRAVSDQLYGDGG 20 (121)
T ss_dssp SSTTHHHHHHHHHHCTT-S
T ss_pred CCccHHHHHHHHHHHHhcC
Confidence 4999999999999875443
No 12
>PF07346 DUF1477: Protein of unknown function (DUF1477); InterPro: IPR009946 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf19; it is a family of uncharacterised viral proteins.
Probab=29.78 E-value=28 Score=28.19 Aligned_cols=21 Identities=38% Similarity=0.339 Sum_probs=16.4
Q ss_pred CCCccChhHHHHHHHHHHHHH
Q 029267 110 GCEAHSDGDVLLHCVVDAILG 130 (196)
Q Consensus 110 GL~gHSDGDVllHAI~DALLG 130 (196)
-|..|||||-+.|+|=-=+|+
T Consensus 91 FLi~~SDG~~lQc~in~~lLd 111 (118)
T PF07346_consen 91 FLIAHSDGDNLQCQINTQLLD 111 (118)
T ss_pred HHHHcCCcchHHHHHHHHHHH
Confidence 368999999999998655543
No 13
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=26.88 E-value=1.4e+02 Score=26.25 Aligned_cols=82 Identities=15% Similarity=0.253 Sum_probs=50.3
Q ss_pred EeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCC-CcCCCCC-HHHHHHHHH
Q 029267 84 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSD-PKWKGAP-SSVFIKEAV 161 (196)
Q Consensus 84 G~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsd-pk~Kga~-S~~~L~~a~ 161 (196)
|+=+|||.-+.|..+++ |+.-+..-+||+-.++..+=+=|..+ |.|.+|.+.. ..|++.. ..-.|++++
T Consensus 31 ~iE~DV~lTkDg~lVv~------HD~~l~R~t~~~g~v~~~t~~el~~l---d~g~~~~~~~~~~~~~~~~~iPtL~evl 101 (263)
T cd08580 31 AIWLTVQLSKDGVPVLY------RPSDLKSLTNGSGAVSAYTAAQLATL---NAGYNFKPEGGYPYRGKPVGIPTLEQVL 101 (263)
T ss_pred EEEEEeEECCCCCEEEe------CCCchhcccCCCCChhhCcHHHHhcC---CCccccccccCcccCCCCCcCccHHHHH
Confidence 67789999888877766 55556555665544444443444443 8888886532 2344432 234678888
Q ss_pred HHHHhcCeEEEEEEE
Q 029267 162 RFFFLIYILIYIEIV 176 (196)
Q Consensus 162 ~li~~~~~iiniDi~ 176 (196)
+++.+ ..+|||+=
T Consensus 102 ~~~~~--~~l~iEiK 114 (263)
T cd08580 102 RAFPD--TPFILDMK 114 (263)
T ss_pred HhhcC--CeEEEEEC
Confidence 88865 34666654
No 14
>PF03010 GP4: GP4; InterPro: IPR004257 This family contains a predicted structural envelope protein Gp4 from Equine arteritis virus (EAV).
Probab=24.88 E-value=18 Score=30.07 Aligned_cols=20 Identities=45% Similarity=0.865 Sum_probs=15.8
Q ss_pred eecccchhhhhh-hhccccCC
Q 029267 177 MGYSNSMIWLQN-LWGFHSRG 196 (196)
Q Consensus 177 i~~~~~~~~l~~-~~~~~~~~ 196 (196)
||--|++||||- -+|+|-.|
T Consensus 86 mehpnatiwlqlqpfgyhvag 106 (152)
T PF03010_consen 86 MEHPNATIWLQLQPFGYHVAG 106 (152)
T ss_pred hcCCCceEEEEecCcceeecc
Confidence 678899999994 58888654
No 15
>KOG3527 consensus Erythrocyte membrane protein 4.1 and related proteins of the ERM family [General function prediction only]
Probab=24.57 E-value=31 Score=36.42 Aligned_cols=28 Identities=39% Similarity=0.472 Sum_probs=22.5
Q ss_pred CCCCCCccChhHHHHH--HHHHHHHHhcCCC
Q 029267 107 HERGCEAHSDGDVLLH--CVVDAILGALGLP 135 (196)
Q Consensus 107 ~~~GL~gHSDGDVllH--AI~DALLGA~glG 135 (196)
-+..+--||||| |=| +++-|||-|+.+.
T Consensus 931 ve~rvti~sdgd-idhd~~lsqai~eat~mn 960 (975)
T KOG3527|consen 931 VEHRVTIHSDGD-IDHDAELSQAILEATQMN 960 (975)
T ss_pred eeeeEEeccCCC-ccchHHHHHHHHHHhccC
Confidence 345677899999 777 7999999998763
No 16
>PRK09894 diguanylate cyclase; Provisional
Probab=24.21 E-value=4.1e+02 Score=21.93 Aligned_cols=82 Identities=11% Similarity=-0.018 Sum_probs=52.9
Q ss_pred CCCCeEEeeeeeCCCCC---CCccChhHHHHHHHHHHHHHhcCCCCC---------cccCCCCCCcCCCCCHHHHHHHHH
Q 029267 94 PGYPLIIGGINVPHERG---CEAHSDGDVLLHCVVDAILGALGLPDI---------GQIFPDSDPKWKGAPSSVFIKEAV 161 (196)
Q Consensus 94 ~gr~LiLGGV~Ip~~~G---L~gHSDGDVllHAI~DALLGA~glGDI---------G~~FPdsdpk~Kga~S~~~L~~a~ 161 (196)
.++++.|--++|++=+- ..||.=||.++..+++.|-..+.-+|+ .-++|+.+.+ ....++++..
T Consensus 155 ~~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~l~~~~~~~~~~~R~~g~~F~ill~~~~~~----~~~~~~~~l~ 230 (296)
T PRK09894 155 EPQNLYLALLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIICLKAATDE----EACRAGERIR 230 (296)
T ss_pred cCCcEEEEEEECccccHHHHccCcHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCeEEEEeCCCCHH----HHHHHHHHHH
Confidence 35677777788876544 489999999999999999887765543 3334443221 2345556655
Q ss_pred HHHHhc-----CeEEEEEEEeec
Q 029267 162 RFFFLI-----YILIYIEIVMGY 179 (196)
Q Consensus 162 ~li~~~-----~~iiniDi~i~~ 179 (196)
+.+.+. +..+.+.++++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~siGv 253 (296)
T PRK09894 231 QLIANHAITHSDGRINITATFGV 253 (296)
T ss_pred HHHHhCCcccCCceEEEEEEEEE
Confidence 555432 333667777764
No 17
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=23.94 E-value=31 Score=29.18 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=27.7
Q ss_pred HHHHHHHHHHH----------hcCeEEEEEEEeecccchhhhhhh
Q 029267 155 VFIKEAVRFFF----------LIYILIYIEIVMGYSNSMIWLQNL 189 (196)
Q Consensus 155 ~~L~~a~~li~----------~~~~iiniDi~i~~~~~~~~l~~~ 189 (196)
.+...+++.++ .+++..|.|.+..+++..-|++.|
T Consensus 120 ~~~~~~l~~lk~f~~~~~~~~~~~y~~~a~~s~~~~~~~~~~~~l 164 (171)
T PRK00945 120 YYASQGLSALKHFSPLKTITIDRYYHPNADMSFPNLSKEEYLEYL 164 (171)
T ss_pred hhHHHHHHHHhhcCCceEEEecCCcCCCCceecCCCCHHHHHHHH
Confidence 45566666666 347799999999999999999876
No 18
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=23.16 E-value=2.5e+02 Score=23.68 Aligned_cols=80 Identities=21% Similarity=0.177 Sum_probs=49.9
Q ss_pred EeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHHHHHHHH
Q 029267 84 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRF 163 (196)
Q Consensus 84 G~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L~~a~~l 163 (196)
|+=+|||.-+.|..++. |+..+..=+|++-.+.-++=+=|-.+ |+|.+|.. +|.+.. .-.|+++++.
T Consensus 38 ~vE~DV~lT~Dg~lVV~------HD~~l~R~t~~~~~v~~~t~~el~~l---~~~~~~~~---~~~~~~-iPtL~evl~~ 104 (249)
T PRK09454 38 MIEFDAKLSADGEIFLL------HDDTLERTSNGWGVAGELTWQDLAQL---DAGSWFSA---AFAGEP-LPTLSQVAAR 104 (249)
T ss_pred EEEEEeeECCCCCEEEE------CCCcccccCCCCCchhhCCHHHHHhc---CCCCccCC---CCCCCc-CCCHHHHHHH
Confidence 56679999888876554 77777655555544444444444443 56677743 444422 2357888888
Q ss_pred HHhcCeEEEEEEE
Q 029267 164 FFLIYILIYIEIV 176 (196)
Q Consensus 164 i~~~~~iiniDi~ 176 (196)
+.+.+..+|||+=
T Consensus 105 ~~~~~~~l~iEiK 117 (249)
T PRK09454 105 CRAHGMAANIEIK 117 (249)
T ss_pred HHhcCCEEEEEEC
Confidence 8766677888874
Done!