Query 029267
Match_columns 196
No_of_seqs 132 out of 1043
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 16:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3re3_A 2-C-methyl-D-erythritol 100.0 4.6E-49 1.6E-53 323.6 10.9 107 78-184 3-111 (162)
2 3f0d_A 2-C-methyl-D-erythritol 100.0 3E-49 1E-53 329.9 9.4 111 74-184 17-128 (183)
3 1t0a_A 2C-methyl-D-erythritol 100.0 4.9E-49 1.7E-53 322.6 9.8 107 79-185 1-108 (159)
4 2pmp_A 2-C-methyl-D-erythritol 100.0 4.7E-49 1.6E-53 323.0 9.3 108 78-185 1-109 (160)
5 2uzh_A 2C-methyl-D-erythritol 100.0 1.9E-48 6.6E-53 320.8 10.4 107 78-184 3-110 (165)
6 1gx1_A 2-C-methyl-D-erythritol 100.0 2.2E-48 7.4E-53 319.1 10.5 105 80-184 1-106 (160)
7 1iv3_A 2-C-methyl-D-erythritol 100.0 2.3E-48 8E-53 316.7 9.4 104 81-184 1-105 (152)
8 3b6n_A 2-C-methyl-D-erythritol 100.0 3.5E-45 1.2E-49 306.3 6.8 104 80-184 4-133 (187)
9 1w55_A ISPD/ISPF bifunctional 100.0 4.5E-43 1.6E-47 310.2 8.9 106 80-185 209-315 (371)
10 4af3_D Incenp, inner centromer 47.4 8.4 0.00029 27.2 1.7 30 125-154 33-62 (71)
11 3h3g_B Parathyroid hormone-rel 37.8 4.6 0.00016 24.0 -0.8 14 178-191 5-18 (24)
12 3dsb_A Putative acetyltransfer 32.9 96 0.0033 20.3 5.2 48 145-193 93-143 (157)
13 2oh1_A Acetyltransferase, GNAT 26.6 77 0.0026 21.7 3.9 48 145-193 112-161 (179)
14 1s3z_A Aminoglycoside 6'-N-ace 26.5 85 0.0029 21.4 4.1 48 145-193 104-153 (165)
15 3lod_A Putative acyl-COA N-acy 22.1 1.5E+02 0.0051 19.8 4.6 48 145-193 83-132 (162)
16 1z4e_A Transcriptional regulat 21.6 1.9E+02 0.0065 19.4 5.4 48 145-193 94-143 (153)
17 4e0a_A BH1408 protein; structu 21.6 1.5E+02 0.0052 19.6 4.6 48 145-193 97-146 (164)
No 1
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=100.00 E-value=4.6e-49 Score=323.55 Aligned_cols=107 Identities=40% Similarity=0.725 Sum_probs=91.6
Q ss_pred CCceeEEeeeeeeecCCCCC-eEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHH
Q 029267 78 SLPFRVGHGFDLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVF 156 (196)
Q Consensus 78 ~m~~RIG~G~DvHrl~~gr~-LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~ 156 (196)
.|+||||+|||+|||++||| ||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||+||..|
T Consensus 3 ~m~~RiG~G~DvH~~~~gr~~liLgGV~ip~~~Gl~gHSDgDVllHAi~DAlLGA~~lGDIG~~Fpdtdp~~kga~S~~l 82 (162)
T 3re3_A 3 AMSFRIGHGYDVHKFTSAKQNIIIGGVEIAYHLGLEAHSDGDVLIHALCDAILGALGLGDIGKHFLDTDNQFKNIDSKFF 82 (162)
T ss_dssp CCCEEEEEEEEEEECCCCCCCEEETTEEECCCC------CCCHHHHHHHHHHHHHTTCCCHHHHC-------CCSCHHHH
T ss_pred cccEEEEceEEeeeecCCCCcEEEeeEEecCCCCCcccCHHHHHHHHHHHHHHHhccCCCCcccCCCCChhhCCCCHHHH
Confidence 57899999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CeEEEEEEEeecccchh
Q 029267 157 IKEAVRFFFLI-YILIYIEIVMGYSNSMI 184 (196)
Q Consensus 157 L~~a~~li~~~-~~iiniDi~i~~~~~~~ 184 (196)
|++++++++++ |.|+|||++|..-.|||
T Consensus 83 L~~~~~~v~~~G~~i~NvD~tii~q~PKl 111 (162)
T 3re3_A 83 LAEIKKMLDKKQYSISNIDCTIIAQAPKM 111 (162)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEECSSSCC
T ss_pred HHHHHHHHHHcCCEEEEEEEEEEcCCCcc
Confidence 99999999987 88999999999999987
No 2
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=100.00 E-value=3e-49 Score=329.90 Aligned_cols=111 Identities=41% Similarity=0.757 Sum_probs=100.1
Q ss_pred CCCCCCceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCH
Q 029267 74 SKSKSLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPS 153 (196)
Q Consensus 74 ~~~~~m~~RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S 153 (196)
.+++.|+||||+|||+|||++|||||||||+||+++||.|||||||++||||||||||+++||||++|||+||+|||+||
T Consensus 17 ~~~~~m~~RiG~G~DvH~~~~gr~LiLGGV~ip~~~GL~gHSDgDVllHAi~DALLGA~glGDIG~~FPdtDp~~kgadS 96 (183)
T 3f0d_A 17 QGPGSMDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADS 96 (183)
T ss_dssp -----CCEEEEEEEEEEEEEETSCEEETTEEECCSEEECSSSCCCHHHHHHHHHHHHHTTCCCHHHHSCC----CTTCCH
T ss_pred cCCCCcceeEEeeEEeeecCCCCCEEEccEeccCCCCccccCHHHHHHHHHHHHHHHhhcCCCCcccCCCCChhhCCCCH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CeEEEEEEEeecccchh
Q 029267 154 SVFIKEAVRFFFLI-YILIYIEIVMGYSNSMI 184 (196)
Q Consensus 154 ~~~L~~a~~li~~~-~~iiniDi~i~~~~~~~ 184 (196)
..||++++++++++ |.|+|||++|..-.|||
T Consensus 97 ~~lL~~~~~lv~~~G~~I~NvD~tIiaq~PKl 128 (183)
T 3f0d_A 97 RALLRECASRVAQAGFAIRNVDSTIIAQAPKL 128 (183)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEEEECSSSCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEEEcCCCcc
Confidence 99999999999988 88999999999999987
No 3
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=100.00 E-value=4.9e-49 Score=322.62 Aligned_cols=107 Identities=41% Similarity=0.716 Sum_probs=103.5
Q ss_pred CceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHHH
Q 029267 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIK 158 (196)
Q Consensus 79 m~~RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L~ 158 (196)
|+||||+|||+|||++||+||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||++|..||+
T Consensus 1 m~~RiG~G~DvH~~~~gr~liLgGV~ip~~~Gl~gHSDgDVl~HAi~DAlLGA~~lGDIG~~Fpdtd~~~kga~S~~lL~ 80 (159)
T 1t0a_A 1 MKIRIGHGFDVHKFGEPRPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLR 80 (159)
T ss_dssp -CEEEEEEEEEEEEEESSCEEETTEEECCSCEECCSSSCCHHHHHHHHHHHHHTTCCCHHHHSCTTCGGGTTCCHHHHHH
T ss_pred CCceEEEEEEeeeecCCCCEEEeeEEecCCCCCcccCHHHHHHHHHHHHHHHhccCCCCcccCCCCChhhCCCCHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CeEEEEEEEeecccchhh
Q 029267 159 EAVRFFFLI-YILIYIEIVMGYSNSMIW 185 (196)
Q Consensus 159 ~a~~li~~~-~~iiniDi~i~~~~~~~~ 185 (196)
+++++++++ |.|+|||++|..-.|||-
T Consensus 81 ~~~~~v~~~G~~i~NvD~tii~q~PKi~ 108 (159)
T 1t0a_A 81 HCYALAKAKGFELGNLDVTIIAQAPKMA 108 (159)
T ss_dssp HHHHHHHHTTEEEEEEEEEEECSSSCCG
T ss_pred HHHHHHHHcCCEEEEEEEEEEcCCCcCh
Confidence 999999997 999999999999999873
No 4
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=4.7e-49 Score=323.01 Aligned_cols=108 Identities=75% Similarity=1.278 Sum_probs=104.7
Q ss_pred CCceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHH
Q 029267 78 SLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI 157 (196)
Q Consensus 78 ~m~~RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L 157 (196)
.|+||||+|||+|||++||+||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||++|..||
T Consensus 1 ~~~~RiG~G~DvH~~~~gr~liLgGV~ip~~~Gl~gHSDgDVl~HAi~DAlLGA~~lGDIG~~Fpdtd~~~kga~S~~lL 80 (160)
T 2pmp_A 1 TLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFI 80 (160)
T ss_dssp CCSEEEEEEEEEEEEEETCCCEETTEECCCSEEECSSSCCCHHHHHHHHHHHHHHTCCCHHHHSCSSCSSCSSCCHHHHH
T ss_pred CCceeEEeEEEeeeecCCCCEEEeeEEeCCCCCCcccChHHHHHHHHHHHHHHhccCCCCcccCCCCChhhCCCCHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-CeEEEEEEEeecccchhh
Q 029267 158 KEAVRFFFLI-YILIYIEIVMGYSNSMIW 185 (196)
Q Consensus 158 ~~a~~li~~~-~~iiniDi~i~~~~~~~~ 185 (196)
++++++++++ |.|.|||++|..-.|||-
T Consensus 81 ~~~~~~v~~~G~~i~NvD~tii~q~PKi~ 109 (160)
T 2pmp_A 81 KEAVRLMDEAGYEIGNLDATLILQRPKIS 109 (160)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEECSSSCCG
T ss_pred HHHHHHHHHcCCEEEEEEEEEEecCCcCH
Confidence 9999999997 999999999999999873
No 5
>2uzh_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ISPF, lyase, mycobacteria, complex with CDP; HET: CDP IPE; 2.2A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.9e-48 Score=320.80 Aligned_cols=107 Identities=31% Similarity=0.548 Sum_probs=101.2
Q ss_pred CCceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHH
Q 029267 78 SLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI 157 (196)
Q Consensus 78 ~m~~RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L 157 (196)
+|+||||+|||+|||++||+||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||++|..||
T Consensus 3 ~~~~RiG~G~DvH~~~~gr~liLgGV~ip~~~Gl~gHSDgDVl~HAi~DAlLGA~~lGDIG~~Fpdtdp~~kga~S~~lL 82 (165)
T 2uzh_A 3 MMLPRVGLGTDVHPIEAGRPCRLLCLEFDDADGCAGHSDGDVAAHALCDALLSAAGLGDLGTIFGTDRPQWRGASGADMI 82 (165)
T ss_dssp --CCEEEEEEEEEEBCTTSCEEETTEEETTSCCBC--CCCCHHHHHHHHHHHHHTTCCCHHHHHTTTCGGGTTCCHHHHH
T ss_pred CCcEEEEEEEEeeeecCCCCEEEeeEEccCCCCCcccCHHHHHHHHHHHHHHHhccCCCCcccCCCCChhhCCCCHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-CeEEEEEEEeecccchh
Q 029267 158 KEAVRFFFLI-YILIYIEIVMGYSNSMI 184 (196)
Q Consensus 158 ~~a~~li~~~-~~iiniDi~i~~~~~~~ 184 (196)
++++++++++ |.|.|||++|..-.|||
T Consensus 83 ~~~~~~v~~~G~~i~NvD~tii~q~PKi 110 (165)
T 2uzh_A 83 RHVRGLVENAGFVIGNATVQVIGNRPKV 110 (165)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEESSSSCC
T ss_pred HHHHHHHHHcCCEEEEEEEEEEcCCCcc
Confidence 9999999997 88999999999999987
No 6
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=100.00 E-value=2.2e-48 Score=319.07 Aligned_cols=105 Identities=45% Similarity=0.781 Sum_probs=102.9
Q ss_pred ceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHHHH
Q 029267 80 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKE 159 (196)
Q Consensus 80 ~~RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L~~ 159 (196)
+||||+|||+|||++||+||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||++|..||++
T Consensus 1 ~~RiG~G~DvH~~~~gr~liLgGV~ip~~~Gl~gHSDgDVl~HAi~DAlLGA~~lGDIG~~Fpdtd~~~kga~S~~lL~~ 80 (160)
T 1gx1_A 1 EMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLRE 80 (160)
T ss_dssp CEEEEEEEEEEEEESSSCEEETTEEECCSSEECSSSCCCHHHHHHHHHHHHHTTCCCHHHHSCTTCGGGTTCCHHHHHHH
T ss_pred CccEEEEEEeeeecCCCcEEEeeEeccCCCCCcccCHHHHHHHHHHHHHHHhccCCCCcccCCCCChhhCCCCHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CeEEEEEEEeecccchh
Q 029267 160 AVRFFFLI-YILIYIEIVMGYSNSMI 184 (196)
Q Consensus 160 a~~li~~~-~~iiniDi~i~~~~~~~ 184 (196)
++++++++ |.|.|||++|..-.|||
T Consensus 81 ~~~~v~~~G~~i~NvD~tii~q~PKi 106 (160)
T 1gx1_A 81 AWRRIQAKGYTLGNVDVTIIAQAPKM 106 (160)
T ss_dssp HHHHHHHTTCEEEEEEEEEECSSSCC
T ss_pred HHHHHHHcCCEEEEEEEEEEcCCCcc
Confidence 99999997 99999999999999987
No 7
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=100.00 E-value=2.3e-48 Score=316.73 Aligned_cols=104 Identities=43% Similarity=0.786 Sum_probs=101.6
Q ss_pred eeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHHHHH
Q 029267 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 160 (196)
Q Consensus 81 ~RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L~~a 160 (196)
||||+|||+|||++|||||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||++|..||+++
T Consensus 1 ~RiG~G~DvH~~~~gr~liLgGV~ip~~~Gl~gHSDgDVllHAi~DAlLGA~~lGDIG~~Fpdtdp~~kga~S~~lL~~~ 80 (152)
T 1iv3_A 1 MRIGYGEDSHRLEEGRPLYLCGLLIPSPVGALAHSDGDAAMHALTDALLSAYGLGDIGLLFPDTDPRWRGERSEVFLREA 80 (152)
T ss_dssp -CEEEEEEEEEEEETSCEEETTEEECCSEEECSSSCCCHHHHHHHHHHHHTTTCCCHHHHSCTTSTTTTTCCHHHHHHHH
T ss_pred CceEEEEEeeeecCCCCEEEeeEEecCCCCCcccChHHHHHHHHHHHHHHhccCCCCcccCCCCChhhCCCCHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CeEEEEEEEeecccchh
Q 029267 161 VRFFFLI-YILIYIEIVMGYSNSMI 184 (196)
Q Consensus 161 ~~li~~~-~~iiniDi~i~~~~~~~ 184 (196)
+++++++ |.|.|||++|..-.|||
T Consensus 81 ~~~~~~~G~~i~NvD~tii~q~PKi 105 (152)
T 1iv3_A 81 MRLVEARGAKLLQASLVLTLDRPKL 105 (152)
T ss_dssp HHHHHHTTCCEEEEEEEEECSSSCC
T ss_pred HHHHHHcCCEEEEEEEEEEecCCcC
Confidence 9999997 99999999999999987
No 8
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=100.00 E-value=3.5e-45 Score=306.27 Aligned_cols=104 Identities=36% Similarity=0.697 Sum_probs=85.2
Q ss_pred ceeEEeeeeeeecCCC-------------------------CCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCC
Q 029267 80 PFRVGHGFDLHRLEPG-------------------------YPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGL 134 (196)
Q Consensus 80 ~~RIG~G~DvHrl~~g-------------------------r~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~gl 134 (196)
+||||+|||+|||+++ |+||||||+|| ++||.|||||||++||||||||||+++
T Consensus 4 ~~RiG~G~DvH~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~r~LiLGGV~ip-~~Gl~gHSDgDVl~HAi~DAlLGA~~l 82 (187)
T 3b6n_A 4 GVRIGQGYDIHQIRVGPPEDIVADTTADTAANTADPNKQSFKRLTIGGVPVE-TISVLSHSDGDVIFHALVDALLGGMSC 82 (187)
T ss_dssp CEEEEEEEEEEEEESSCCC------------------CCEEEEEEETTEEEE-EEEEEESSCCCHHHHHHHHHHHHHTTC
T ss_pred CceeEeeEeeeccccCCccccccccccccccccccccccCCCcEEEeeEecC-CCCCCccCHHHHHHHHHHHHHHHhccC
Confidence 5899999999999754 89999999999 789999999999999999999999999
Q ss_pred CCCcccCCCCCCcCCCCCHHHHHHHHHHHHHhc-CeEEEEEEEeecccchh
Q 029267 135 PDIGQIFPDSDPKWKGAPSSVFIKEAVRFFFLI-YILIYIEIVMGYSNSMI 184 (196)
Q Consensus 135 GDIG~~FPdsdpk~Kga~S~~~L~~a~~li~~~-~~iiniDi~i~~~~~~~ 184 (196)
||||++|||+||+|||++|..||++++++++++ |.|.|||++|.+-.|||
T Consensus 83 GDIG~~FPdtdp~~kga~S~~lL~~a~~l~~~~Gy~I~NvD~tiiaq~PKi 133 (187)
T 3b6n_A 83 SDLGTLFPDGSPKYKNKNSLSFLRYARLLLYKRNYAIANVDIIVIAEVPKI 133 (187)
T ss_dssp C---------------CCTHHHHHHHHHHHHHTTEEEEEEEEEEECSSSCS
T ss_pred CCCcccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEeCCCcc
Confidence 999999999999999999999999999999997 88999999999999987
No 9
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=100.00 E-value=4.5e-43 Score=310.18 Aligned_cols=106 Identities=41% Similarity=0.658 Sum_probs=103.4
Q ss_pred ceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCccChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCCCCHHHHHHH
Q 029267 80 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKE 159 (196)
Q Consensus 80 ~~RIG~G~DvHrl~~gr~LiLGGV~Ip~~~GL~gHSDGDVllHAI~DALLGA~glGDIG~~FPdsdpk~Kga~S~~~L~~ 159 (196)
.||||+|||+|+|++||+||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||++|..||++
T Consensus 209 ~~r~g~g~d~h~~~~~~~~~l~g~~i~~~~g~~~hsd~dv~~ha~~da~lga~~~gdig~~f~~~~~~~~~~~s~~~l~~ 288 (371)
T 1w55_A 209 EIFTGNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQ 288 (371)
T ss_dssp CEEEEEEEEEEEEEEESCEEETTEEEESSEEECSSTTCCHHHHHHHHHHHHHTTCCCHHHHSCCTTSTTTTCCHHHHHHH
T ss_pred ceEEecCceEeeccCCCceeecCEEecCCCCCccCChhHHHHHHHHHHHHHhhcCCCccccCCCCChhhCCCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CeEEEEEEEeecccchhh
Q 029267 160 AVRFFFLI-YILIYIEIVMGYSNSMIW 185 (196)
Q Consensus 160 a~~li~~~-~~iiniDi~i~~~~~~~~ 185 (196)
++++++++ |.|+|||++|..-.|||-
T Consensus 289 ~~~~~~~~g~~~~n~d~~~~~~~pk~~ 315 (371)
T 1w55_A 289 AYDKVREIGFELINIDICVMAQSPKLK 315 (371)
T ss_dssp HHHHHHHTTEEEEEEEEEEECSSSCCG
T ss_pred HHHHHHHcCCEEEEEeEEEEeCCCCch
Confidence 99999987 999999999999999874
No 10
>4af3_D Incenp, inner centromere protein; transferase-inhibitor complex, aurkb; HET: VX6; 2.75A {Homo sapiens}
Probab=47.42 E-value=8.4 Score=27.18 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=16.8
Q ss_pred HHHHHHhcCCCCCcccCCCCCCcCCCCCHH
Q 029267 125 VDAILGALGLPDIGQIFPDSDPKWKGAPSS 154 (196)
Q Consensus 125 ~DALLGA~glGDIG~~FPdsdpk~Kga~S~ 154 (196)
.|.|+|...--|+-++|+.+.++|+...|+
T Consensus 33 pd~IFG~i~p~~LeeIF~~~k~r~~kRtSS 62 (71)
T 4af3_D 33 LLELFGTILPLDLEDIFKKSKPRYHKRTSS 62 (71)
T ss_dssp HHHHHCCCCCCCSTTTCC------------
T ss_pred HHHHcCCCCCCCHHHHhCccccccccCCCc
Confidence 488999999999999999988888665554
No 11
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=37.75 E-value=4.6 Score=24.01 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=10.3
Q ss_pred ecccchhhhhhhhc
Q 029267 178 GYSNSMIWLQNLWG 191 (196)
Q Consensus 178 ~~~~~~~~l~~~~~ 191 (196)
-.++-.+|||||-+
T Consensus 5 Q~~rRr~wL~~ll~ 18 (24)
T 3h3g_B 5 QDLRRRFFLHHLIA 18 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34566799999864
No 12
>3dsb_A Putative acetyltransferase; APC60368.2, ST genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.48A {Clostridium difficile}
Probab=32.86 E-value=96 Score=20.34 Aligned_cols=48 Identities=6% Similarity=-0.046 Sum_probs=30.7
Q ss_pred CCcCCCCC-HHHHHHHHHHHHHhcC--eEEEEEEEeecccchhhhhhhhccc
Q 029267 145 DPKWKGAP-SSVFIKEAVRFFFLIY--ILIYIEIVMGYSNSMIWLQNLWGFH 193 (196)
Q Consensus 145 dpk~Kga~-S~~~L~~a~~li~~~~--~iiniDi~i~~~~~~~~l~~~~~~~ 193 (196)
+|+|+|.- ...+|+.+.+.+++.+ ..+.+.+.-+|..+.=+.+.+ ||.
T Consensus 93 ~p~~rg~Gig~~ll~~~~~~~~~~~~~~~i~~~~~~~n~~a~~~y~k~-Gf~ 143 (157)
T 3dsb_A 93 DKEYRRKGIFNYLFNYIKNICDKDENIVGMRLYVEKENINAKATYESL-NMY 143 (157)
T ss_dssp CGGGCSSSHHHHHHHHHHHHHHHCTTEEEEEEEEETTCTTHHHHHHTT-TCE
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHC-CCE
Confidence 56777655 6788999999999887 345555544554444444443 554
No 13
>2oh1_A Acetyltransferase, GNAT family; YP_013287.1, structural genom joint center for structural genomics, JCSG, protein structu initiative; HET: MSE UNL; 1.46A {Listeria monocytogenes str}
Probab=26.58 E-value=77 Score=21.70 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=33.1
Q ss_pred CCcCCCCC-HHHHHHHHHHHHHhc-CeEEEEEEEeecccchhhhhhhhccc
Q 029267 145 DPKWKGAP-SSVFIKEAVRFFFLI-YILIYIEIVMGYSNSMIWLQNLWGFH 193 (196)
Q Consensus 145 dpk~Kga~-S~~~L~~a~~li~~~-~~iiniDi~i~~~~~~~~l~~~~~~~ 193 (196)
+|+|.|.- ...+|+.+.+.+++. ...+.+++.-+|..+.=..+++ ||.
T Consensus 112 ~p~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~~~~~N~~a~~~y~k~-GF~ 161 (179)
T 2oh1_A 112 SRAFSGISLSKQMIYFAEKLGIEMSVPFIRLDCIESNETLNQMYVRY-GFQ 161 (179)
T ss_dssp CGGGTTSCHHHHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHT-TCE
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCcHHHHHHHHHC-CCE
Confidence 56777654 788999999988876 4567777766666555555543 664
No 14
>1s3z_A Aminoglycoside 6'-N-acetyltransferase; GNAT, aminoglycoside ribostamycin; HET: COA RIO; 2.00A {Salmonella enteritidis} SCOP: d.108.1.1 PDB: 1s5k_A* 1s60_A* 2vbq_A*
Probab=26.54 E-value=85 Score=21.43 Aligned_cols=48 Identities=17% Similarity=0.044 Sum_probs=30.9
Q ss_pred CCcCCCCC-HHHHHHHHHHHHHhcC-eEEEEEEEeecccchhhhhhhhccc
Q 029267 145 DPKWKGAP-SSVFIKEAVRFFFLIY-ILIYIEIVMGYSNSMIWLQNLWGFH 193 (196)
Q Consensus 145 dpk~Kga~-S~~~L~~a~~li~~~~-~iiniDi~i~~~~~~~~l~~~~~~~ 193 (196)
+|+|+|.- ...+|+.+.+.+++.+ ..+.+++.-+|..+.=+.+.+ ||.
T Consensus 104 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~-GF~ 153 (165)
T 1s3z_A 104 LPSFRQRGVAKQLIAAVQRWGTNKGCREMASDTSPENTISQKVHQAL-GFE 153 (165)
T ss_dssp CGGGCSSSHHHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHHHHT-TCE
T ss_pred ChhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCcCCHHHHHHHHHc-CCe
Confidence 46666644 6788888888888763 566666666655554444543 664
No 15
>3lod_A Putative acyl-COA N-acyltransferase; structural genomics, PSI2, MCSG, structure initiative; 2.50A {Klebsiella pneumoniae subsp}
Probab=22.13 E-value=1.5e+02 Score=19.84 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=27.4
Q ss_pred CCcCCCCC-HHHHHHHHHHHHHhc-CeEEEEEEEeecccchhhhhhhhccc
Q 029267 145 DPKWKGAP-SSVFIKEAVRFFFLI-YILIYIEIVMGYSNSMIWLQNLWGFH 193 (196)
Q Consensus 145 dpk~Kga~-S~~~L~~a~~li~~~-~~iiniDi~i~~~~~~~~l~~~~~~~ 193 (196)
+|+|.|.- ...+|+.+.+.+++. ...+.+++.-+|..+.=+.+.+ ||.
T Consensus 83 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~~~-GF~ 132 (162)
T 3lod_A 83 DPQHRGQQLGEKLLAALEAKARQRDCHTLRLETGIHQHAAIALYTRN-GYQ 132 (162)
T ss_dssp CTTSCSSSHHHHHHHHHHHHHHTTTCCEEEEEEETTCHHHHHHHHHT-TCE
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCcEEEEEecCCCHHHHHHHHHc-CCE
Confidence 45555544 677788888888776 3345555555554444444432 553
No 16
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold, structural genomics, PSI, P structure initiative; 2.00A {Bacillus halodurans} SCOP: d.108.1.1
Probab=21.65 E-value=1.9e+02 Score=19.45 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=30.3
Q ss_pred CCcCCCCC-HHHHHHHHHHHHHhcCe-EEEEEEEeecccchhhhhhhhccc
Q 029267 145 DPKWKGAP-SSVFIKEAVRFFFLIYI-LIYIEIVMGYSNSMIWLQNLWGFH 193 (196)
Q Consensus 145 dpk~Kga~-S~~~L~~a~~li~~~~~-iiniDi~i~~~~~~~~l~~~~~~~ 193 (196)
+|+|.|.- ...+|+.+.+..++.+. .+.+++.-+|..+.=..+.+ ||.
T Consensus 94 ~p~~rg~GiG~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~Y~k~-GF~ 143 (153)
T 1z4e_A 94 HSAARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQRPDALRFYEQL-GFK 143 (153)
T ss_dssp CTTSTTSSHHHHHHHHHHHHHHHTTEEEEEEEEETTCTTHHHHHHHH-TCE
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEEccCChHHHHHHHHc-CCc
Confidence 46666644 77889999999887753 45666555554444444443 664
No 17
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=21.62 E-value=1.5e+02 Score=19.59 Aligned_cols=48 Identities=8% Similarity=0.127 Sum_probs=29.0
Q ss_pred CCcCCCCC-HHHHHHHHHHHHHhc-CeEEEEEEEeecccchhhhhhhhccc
Q 029267 145 DPKWKGAP-SSVFIKEAVRFFFLI-YILIYIEIVMGYSNSMIWLQNLWGFH 193 (196)
Q Consensus 145 dpk~Kga~-S~~~L~~a~~li~~~-~~iiniDi~i~~~~~~~~l~~~~~~~ 193 (196)
+|+|.|.- ...+|+.+.+.+++. ...+.+++.-.|..+.=+.+. .||.
T Consensus 97 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k-~GF~ 146 (164)
T 4e0a_A 97 DETRRGGGIGRLIFEAIISYGKAHQVDAIELDVYDFNDRAKAFYHS-LGMR 146 (164)
T ss_dssp CGGGCSSSHHHHHHHHHHHHHHHTTCSEEEEEEETTCHHHHHHHHH-TTCE
T ss_pred CHHHhcCChHHHHHHHHHHHHHHcCCCEEEEEEEcCCHHHHHHHHH-cCCE
Confidence 45666644 677888888888776 445566655555444444444 2654
Done!