BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029268
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 99/146 (67%), Gaps = 12/146 (8%)
Query: 5 DMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREE 64
D D ++T+ K EL +MK R+ EME EA LR M ++ NE + ++ ++E
Sbjct: 3 DQDALDTQEK--ELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKES 51
Query: 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQE 123
+D++SV+VGNVDYS TPEE+Q HF SCG+VNRVTI DKF G PKG+AY+EF + V
Sbjct: 52 IDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPN 111
Query: 124 ALHLNESELHGRQLKVTVKRTNVPGM 149
AL LN S LH R LKVT KRTNVPGM
Sbjct: 112 ALLLNGSMLHERPLKVTPKRTNVPGM 137
>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Pabp2 PE=3 SV=1
Length = 225
Score = 137 bits (344), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 95/136 (69%), Gaps = 3/136 (2%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGN 74
EL+ +K R+KEMEEEA ++QM ++V +MA S AA SL ++E+D+RSV+VGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGN 102
Query: 75 VDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELH 133
VDY + EE++ HF CGT+NRVTI +K G PKG+AY+EF E V+ AL +NE+
Sbjct: 103 VDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162
Query: 134 GRQLKVTVKRTNVPGM 149
GRQ+KV KRTN PG+
Sbjct: 163 GRQIKVMSKRTNRPGL 178
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 94/136 (69%), Gaps = 3/136 (2%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGN 74
EL+ +K R+KEMEEEA ++QM ++V +MA S A SL ++E+D+RSV+VGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGN 102
Query: 75 VDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELH 133
VDY + EE++ HF CGT+NRVTI +K G PKG+AY+EF E V+ AL +NE+
Sbjct: 103 VDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162
Query: 134 GRQLKVTVKRTNVPGM 149
GRQ+KV KRTN PG+
Sbjct: 163 GRQIKVMSKRTNRPGL 178
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 100/171 (58%), Gaps = 23/171 (13%)
Query: 10 ETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSL-------ANR 62
ET + EL++MK R +EMEEEA L ++ + + + GG+ ++
Sbjct: 36 ETSFEDPELEEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTDQ 95
Query: 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAV 121
EE+DSRSV+VGNVDY T +++ +FQSCGTVNR+TI +DK G PKG YVEF+ E++
Sbjct: 96 EEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESI 155
Query: 122 QEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPP 172
A+ LN+S + RQLK+T KRTN+P Y R ++PP
Sbjct: 156 INAMALNDSFFNERQLKITPKRTNLP---------------YYMRQGVLPP 191
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 108/192 (56%), Gaps = 16/192 (8%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G SL + E D+RS++VG
Sbjct: 114 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVG 173
Query: 74 NVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 132
NVDY T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 174 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 233
Query: 133 HGRQLKVTVKRTNVPGM---------KQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKI 183
GRQ+KV KRTN PG+ ++R R N SR F P G
Sbjct: 234 RGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTN---YNSSRSRFYSGFNSRPRGRIYR 290
Query: 184 PRFRMPMRYSPY 195
R R YSPY
Sbjct: 291 GRARATSWYSPY 302
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 108/192 (56%), Gaps = 16/192 (8%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 177
Query: 74 NVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 132
NVDY T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 178 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 237
Query: 133 HGRQLKVTVKRTNVPGMK---------QHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKI 183
GRQ+KV KRTN PG+ ++R R N SR F P G
Sbjct: 238 RGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTN---YNSSRSRFYSGFNSRPRGRVYR 294
Query: 184 PRFRMPMRYSPY 195
R R YSPY
Sbjct: 295 GRARATSWYSPY 306
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 108/192 (56%), Gaps = 16/192 (8%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 177
Query: 74 NVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 132
NVDY T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 178 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 237
Query: 133 HGRQLKVTVKRTNVPGMK---------QHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKI 183
GRQ+KV KRTN PG+ ++R R N SR F P G
Sbjct: 238 RGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTN---YNSSRSRFYSGFNSRPRGRVYR 294
Query: 184 PRFRMPMRYSPY 195
R R YSPY
Sbjct: 295 GRARATSWYSPY 306
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 92/137 (67%), Gaps = 4/137 (2%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 168
Query: 74 NVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 132
NVDY T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 169 NVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLF 228
Query: 133 HGRQLKVTVKRTNVPGM 149
GRQ+KV KRTN PG+
Sbjct: 229 RGRQIKVVPKRTNRPGI 245
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 92/137 (67%), Gaps = 4/137 (2%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 108 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 167
Query: 74 NVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 132
NVDY T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 168 NVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLF 227
Query: 133 HGRQLKVTVKRTNVPGM 149
GRQ+KV KRTN PG+
Sbjct: 228 RGRQIKVVPKRTNRPGI 244
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 22/158 (13%)
Query: 14 KQVELDD-----MKIRLKEMEEEATALRQMHAK---VGNE----MASKQDPAAGGS---- 57
++ ELDD +++R++EMEEEA L+ + + +G M + G+
Sbjct: 18 EECELDDPELKAIRMRVREMEEEAERLKGLSGQDKSIGVSTRPCMQTTHSKMTAGAYTEG 77
Query: 58 -----SLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYA 111
S ++E+D RSV+VGNVDY T ++++ HF SCG++NR+TI DKF G PKGYA
Sbjct: 78 PPQPLSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYA 137
Query: 112 YVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGM 149
Y+EF + +V A+ ++E+ GR +KV KRTN+PG+
Sbjct: 138 YIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGI 175
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 92/137 (67%), Gaps = 4/137 (2%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 168
Query: 74 NVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 132
NVDY T EE++ HF CG+VNRVTI DK+ G PKG+AY+EF E+V+ +L L+ES
Sbjct: 169 NVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLF 228
Query: 133 HGRQLKVTVKRTNVPGM 149
GRQ+KV KRTN PG+
Sbjct: 229 RGRQIKVVPKRTNRPGI 245
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 93/166 (56%), Gaps = 35/166 (21%)
Query: 10 ETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS------------ 57
E E EL +++R++EMEEEA L+ + S QD + G S
Sbjct: 19 ECELDDPELKAIRMRVREMEEEAERLKGL---------SGQDKSIGVSPRPCMKLIHSKM 69
Query: 58 -------------SLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF 104
S ++E+D RSV+VGNVDY T ++++ HF SCG++NR+TI DKF
Sbjct: 70 TAGEYTEGPPRPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKF 129
Query: 105 -GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGM 149
G PKGYAY+EF + +V A+ ++E+ GR +KV KRTN+PG+
Sbjct: 130 SGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGI 175
>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens
GN=PABPN1L PE=2 SV=1
Length = 278
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 17/161 (10%)
Query: 6 MDMIETEN------KQVELDDMKIRLKEMEEEATALR------QMHAKVGNEMASKQDPA 53
+ ++E EN EL+ +K+++ ME+ R Q + G P
Sbjct: 69 LSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTAAGQLLSPE 128
Query: 54 AGGSSLAN----REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPK 108
G L+ + E D RSV+VGNVDY + EE++ HF CG V+RVTI DKF G PK
Sbjct: 129 TVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPK 188
Query: 109 GYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGM 149
GYAY+EF +VQ A+ L++S GR +KV KRTN PG+
Sbjct: 189 GYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGI 229
>sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus
GN=Pabpn1l PE=2 SV=1
Length = 269
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQ 122
E D RSV+VGNVDY + E++ +F CG ++RVTI DKF G PKGYAY+EF +VQ
Sbjct: 135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQ 194
Query: 123 EALHLNESELHGRQLKVTVKRTNVPGM 149
A+ L+ES GR +KV KRTN PG+
Sbjct: 195 AAVRLDESTFRGRVIKVLPKRTNFPGI 221
>sp|Q5XFR0|EPAB2_MOUSE Embryonic polyadenylate-binding protein 2 OS=Mus musculus
GN=Pabpn1l PE=2 SV=1
Length = 273
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQ 122
E D RSVFVGNVDY + E++ +F CG ++RVTI DKF G PKGYAY+EF +V+
Sbjct: 139 EADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVK 198
Query: 123 EALHLNESELHGRQLKVTVKRTNVPGM 149
A+ L+ES GR +KV KRTN PG+
Sbjct: 199 AAVGLDESTFRGRVIKVLPKRTNFPGI 225
>sp|P40561|SGN1_YEAST RNA-binding protein SGN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGN1 PE=1 SV=1
Length = 250
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 60 ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQS 118
A++ E DSRS+FVGN+ TPE+++ HF+ CG + R+T+ D+ G PKGY Y+EF
Sbjct: 56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESP 115
Query: 119 EAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQ 164
++AL LN EL G+++ V+ KRTN+PG +H + F +Q
Sbjct: 116 AYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQ 161
>sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans
GN=EEED8.12 PE=4 SV=1
Length = 197
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 79/125 (63%), Gaps = 6/125 (4%)
Query: 27 EMEEEATALRQMHAKVGNEMASKQDPAA-GGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 85
E+E E+ L Q+ N+MA + AA + ++ +D++SVF+GNVD++ T EEV+
Sbjct: 23 EIEAESAILEQIQ----NKMAKNLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVE 78
Query: 86 QHFQSCGTVNRVTIRTDKFGQP-KGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144
+HF+ CG + R TI DKF + K +AY+EF S +++ AL +N S R + VT KRT
Sbjct: 79 EHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRT 138
Query: 145 NVPGM 149
N+PGM
Sbjct: 139 NIPGM 143
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 78/124 (62%), Gaps = 4/124 (3%)
Query: 27 EMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQ 86
E+E E+ L+Q+ K+ + S A + ++ +D++SVF+GNVD++ T EE+++
Sbjct: 17 EIEAESAILQQIQNKMAKHLES---AAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEE 73
Query: 87 HFQSCGTVNRVTIRTDKFGQP-KGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 145
HF+ CG + + TI DKF + K +AY+EF S +++ AL +N S R + VT KRTN
Sbjct: 74 HFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTN 133
Query: 146 VPGM 149
+PGM
Sbjct: 134 IPGM 137
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 25 LKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEV 84
KE AL++ A++ + + D A+ SS D RSVFVGN+ Y +
Sbjct: 250 FKEESAATQALKRNGAQIADGFRIRVDLASETSSR------DKRSVFVGNLPYKVEESAI 303
Query: 85 QQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 139
++HF CG++ V I DK G KG+ YV F +++V AL LN SEL GR+L+V
Sbjct: 304 EKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRV 359
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 8/129 (6%)
Query: 25 LKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEV 84
KE A AL++ A++ + D A S A+R D RSVFVGN+ Y +
Sbjct: 248 FKEERAAAKALQRNGAQIAEGFRIRVDLA---SETASR---DKRSVFVGNLPYRVDESAL 301
Query: 85 QQHFQSCGTVNRVTI-RTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143
++HF CG++ V I R G +G+ YV F ++AV AL LN SEL GR+L+V ++
Sbjct: 302 EEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV-MRS 360
Query: 144 TNVPGMKQH 152
N +KQ
Sbjct: 361 VNKEKLKQQ 369
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRT----------------DKF--GQP 107
+ R+VFVGN+ +C ++++ F+ G V V R+ KF Q
Sbjct: 181 NERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQK 240
Query: 108 KGYAYVEFLQSEAVQEALHLNESEL 132
AYV F + A +AL N +++
Sbjct: 241 SINAYVVFKEERAAAKALQRNGAQI 265
>sp|Q8C5L7|RBM34_MOUSE RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1
Length = 375
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 8/131 (6%)
Query: 23 IRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPE 82
+ K+ A AL++ A++ + D A S A+R D RSVFVGN+ Y
Sbjct: 252 VVFKDESAAAKALQRNGAQIAEGFRIRVDLA---SETASR---DKRSVFVGNLPYKIEDS 305
Query: 83 EVQQHFQSCGTVNRVTI-RTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 141
+++HF CG++ V I R G +G+ YV F ++AV AL LN SEL GR+L+V +
Sbjct: 306 ALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV-M 364
Query: 142 KRTNVPGMKQH 152
+ N +KQ
Sbjct: 365 RSVNKEKLKQQ 375
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 18/85 (21%)
Query: 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIR---------TDKFG---------QP 107
+ R+VFVGN+ +C ++++ F+ G V V R T K Q
Sbjct: 187 NERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQK 246
Query: 108 KGYAYVEFLQSEAVQEALHLNESEL 132
AYV F A +AL N +++
Sbjct: 247 SINAYVVFKDESAAAKALQRNGAQI 271
>sp|Q75BJ7|NOP12_ASHGO Nucleolar protein 12 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP12 PE=3 SV=1
Length = 426
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEALH 126
RSVFVGN+D+ + E + +HF SCG + V I D K KG+AYV+F +V +AL
Sbjct: 259 RSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALL 318
Query: 127 LNESEL---HGRQLKVT 140
LN+ ++ GR+L+VT
Sbjct: 319 LNDKKMAVGKGRKLRVT 335
>sp|Q6CKV6|NOP12_KLULA Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=NOP12 PE=3 SV=2
Length = 462
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEALH 126
RSVFVGN+D+ E + +HF+ CG + V IR K KG+AYV+F ++V +AL
Sbjct: 297 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 356
Query: 127 LNESELH----GRQLKVT 140
L+E ++H R+L+++
Sbjct: 357 LHEKKIHEGKKARKLRIS 374
>sp|Q6FUS6|NOP12_CANGA Nucleolar protein 12 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOP12 PE=3
SV=1
Length = 396
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
Query: 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEALH 126
RSVFVGN+D+ E + +HF +CG++ V I D K KG+AYV+F + ++V +AL
Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287
Query: 127 LNES-------ELHGRQLKVT 140
LNE L R+L+VT
Sbjct: 288 LNEKPMISQNEHLKKRKLRVT 308
>sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP12 PE=1 SV=1
Length = 459
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEALH 126
RS+FVGN+D+ E + +HF+ CG + V IR K KG+AYV+F ++V +AL
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338
Query: 127 LNE 129
LNE
Sbjct: 339 LNE 341
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH 126
S+++FVGN+ Y+ E+V+Q FQ G V + T + G +G+ +VEF +EA ++AL
Sbjct: 448 SKTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEAAKKALE 507
Query: 127 LNESELHGRQLKVTVKR 143
L +L GR +++ + R
Sbjct: 508 LAGHDLMGRPVRLDLAR 524
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 57 SSLANREEVDSRSVFVGNVDYSCTPEEV----QQHFQSCGTVNRVTIRTD-KFGQPKGYA 111
SS + ++F+ D S ++ ++HF SCG + RV+I D + G KG A
Sbjct: 538 SSFKKPAQSSGNTIFIKGFDTSLDIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMA 597
Query: 112 YVEFLQSEAVQEALHLNESELHGRQLKV 139
Y++F + ++ +A LN S+L G L V
Sbjct: 598 YMDFADNGSLSKAYELNGSDLGGYSLYV 625
>sp|Q804A9|DAZL_CHICK Deleted in azoospermia-like OS=Gallus gallus GN=DAZL PE=2 SV=1
Length = 289
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 69 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLN 128
+VFVG +D E++ +F+ GTV V I TD+ G KGY +V FL + VQ+ + +
Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-S 95
Query: 129 ESELHGRQLKV---TVKRTNVPGMKQHRPRRPNP 159
+ +HG++LK+ K+ N+ Q RP NP
Sbjct: 96 QISVHGKRLKLGPAIRKQQNLCSYMQPRPLAFNP 129
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 57 SSLANREEV---DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAY 112
SSLA R+ RSVFVGN+ Y T E+++ F G+V + D+ G+PKGY +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61
Query: 113 VEFLQSEAVQEAL-HLNESELHGRQLKV 139
E+ E A+ +LN E GR L+V
Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 57 SSLANREEV---DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAY 112
SSLA R+ RSVFVGN+ Y T E+++ F G+V + D+ G+PKGY +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61
Query: 113 VEFLQSEAVQEAL-HLNESELHGRQLKV 139
E+ E A+ +LN E GR L+V
Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRV 89
>sp|O13741|NOP12_SCHPO Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nop12 PE=1 SV=1
Length = 438
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEALH 126
R VFVGN+ + E + ++F CG+++ V I D K KG+AY++F + V +AL
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 127 LNESEL-HGRQLKVTVKRTNVP 147
LNE ++ GR L++ ++ P
Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKP 351
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 12 ENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVF 71
ENKQV D +I ++ ++ TA A + ++ S A+ + D R +F
Sbjct: 3 ENKQV---DTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLF 59
Query: 72 VGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEALHLNES 130
VG + + T +E++ HF G + + ++TD + G+ +G+A++ F +EA+ + +E
Sbjct: 60 VGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEH 119
Query: 131 ELHGRQL 137
++ +++
Sbjct: 120 IINSKKV 126
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 70 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLN 128
+FVG + + EE++ +F G + V + DK Q KG+ ++ F + V + L
Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTP 197
Query: 129 ESELHGRQLKV 139
+ ++ G+++ V
Sbjct: 198 KQKIAGKEVDV 208
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 125
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 126 HLNESELHGRQLKV 139
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 125
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 126 HLNESELHGRQLKV 139
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 125
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 126 HLNESELHGRQLKV 139
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 125
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 126 HLNESELHGRQLKV 139
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 48/77 (62%)
Query: 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEA 124
+S ++F+GN+ ++ ++V++ FQ G V V + T + G +G+ +V+F SE ++A
Sbjct: 308 TESATLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEEAKKA 367
Query: 125 LHLNESELHGRQLKVTV 141
L L+ +L GR +++ +
Sbjct: 368 LELHGCDLDGRPVRLDL 384
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 67 SRSVFVGNVDYSCTP----EEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAV 121
S+S+FV D S E ++ HF CG + RV++ D+ G KG AY++F +
Sbjct: 410 SQSIFVKGFDSSLEESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASF 469
Query: 122 QEALHLNESELHGRQLKV 139
+AL L+ S+L G L V
Sbjct: 470 SKALELSGSDLGGYNLYV 487
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 10/93 (10%)
Query: 48 SKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQP 107
S+Q+ GG E +S+++ V N+ Y+ + E +Q+ F+ ++ + + G+P
Sbjct: 447 SQQESQKGGG------ERESKTLIVNNLSYAASEETLQELFKKATSIK---MPQNNQGRP 497
Query: 108 KGYAYVEFLQSEAVQEALH-LNESELHGRQLKV 139
KGYA+VEF +E +EAL+ N +E+ GR +++
Sbjct: 498 KGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 530
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 61 NREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEF 115
N++E D+R++FV N+ Y T +E++ F++ V V +K G KG AY+EF
Sbjct: 364 NKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLV---LNKEGSSKGMAYIEF 415
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 35 LRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTV 94
+++ K EMA+K P A + S+FV N+ + EE++ +
Sbjct: 250 VKEAPGKRKKEMANKSAPEA--KKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGK 307
Query: 95 NRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 139
+ + + G K + YV+FL +E + +AL LN +L G ++K+
Sbjct: 308 KNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKL 352
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 123
++ +F+ + +SCT EE+++ ++ GTV + + T++ G+PKG AYVE+ +S+A Q
Sbjct: 798 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 857
Query: 124 ALHLNESELHGRQLKVTVK---RTNVPGMKQHRPRRPNPFMVYQSRGA 168
+ ++ + +KV + + VP + R P ++ Q+ GA
Sbjct: 858 VMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGA 905
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 66 DSRSVFVGNVDYSCTPEEVQQH--FQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 123
DS +VFV N+ YS + + F++CG V ++ G +GY YVEF + ++ +
Sbjct: 702 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQ 761
Query: 124 ALHLNESELHGRQLKVT--VKRTNVPGMKQHR 153
AL ++ + GR + V+ V ++ P K R
Sbjct: 762 ALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFR 793
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 69 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALH- 126
S++VGN+ YS T +++ + F G+V RV + TD+ G+ +G+ +VE S A A+
Sbjct: 2 SIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQA 61
Query: 127 LNESELHGRQLKVTVKR 143
L+ +E GR LKV R
Sbjct: 62 LDGAEWMGRVLKVNKAR 78
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 6 MDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEV 65
+D + E ++ ++ ++ EE +Q+ + GN S+ ++GG +
Sbjct: 60 LDRVLQEKHSIDTREVDVKRAMSREE----QQVSGRTGNLNTSR---SSGGDAYNK---- 108
Query: 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEA 124
++ +FVG + + T EE +Q+F+ G V V I D+ +P+G+ +V F +AV
Sbjct: 109 -TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSV 167
Query: 125 LHLNESELHGRQLKV 139
LH +L G+Q++V
Sbjct: 168 LHKTFHDLSGKQVEV 182
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQ 122
+ D +FVG + + +++++HF + G V++ + DK G+P+G+ +V F +
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 123 EALH 126
L
Sbjct: 62 RVLQ 65
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 66 DSRSVFVGNVDYSCTPEEVQ----QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEA 120
D + +FV D S + ++++ +HF SCG + V++ D+ G KG AY+EF SE
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF--SEG 456
Query: 121 VQEALHLNESELHG 134
++AL LN S++ G
Sbjct: 457 KEKALELNGSDMGG 470
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 52 PAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGY 110
PAAGGS +++F N+ ++ +V+ F+ G V V T++ G +G+
Sbjct: 291 PAAGGS----------KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGF 340
Query: 111 AYVEFLQSEAVQEALHLNESELHGRQLKVTV 141
+VEF SE Q+AL + L GR++++ +
Sbjct: 341 GHVEFASSEEAQKALEFHGRPLLGREIRLDI 371
>sp|Q5REG1|SART3_PONAB Squamous cell carcinoma antigen recognized by T-cells 3 OS=Pongo
abelii GN=SART3 PE=2 SV=1
Length = 981
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 123
++ +F+ + +SCT EE+++ ++ GTV + + T++ G+PKG AYVE+ +S+A Q
Sbjct: 816 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 875
Query: 124 ALHLNESELHGRQLKVTVK---RTNVPGMKQHRPRRPNPFMVYQSRGA 168
+ ++ + +KV + + VP + R P ++ Q+ GA
Sbjct: 876 VMKMDGMTIKENVIKVAISNPPQRKVPEKPETRKAPGGPTLLPQTYGA 923
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 66 DSRSVFVGNVDYSCTPEEVQQH--FQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 123
DS +VFV N+ YS + + F++CG V ++ G +GY YVEF + ++ +
Sbjct: 720 DSITVFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNRGDFRGYRYVEFKEEKSALQ 779
Query: 124 ALHLNESELHGRQLKVT--VKRTNVPGMKQHR 153
AL ++ + GR + V+ V ++ P K R
Sbjct: 780 ALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFR 811
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 25/161 (15%)
Query: 7 DMIETENKQVELDDMKIRLK------------EMEEEATALRQMHAKVGNEMASKQDPAA 54
++ E E K+V D M+IRL E + EA A + + K G E+ +
Sbjct: 405 NITEDELKEVFEDAMEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 464
Query: 55 GGSSLANREEV---------DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFG 105
R+E +S+++ + N+ YS T E +++ F+ + + + G
Sbjct: 465 YTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEK---ATFIKVPQNPHG 521
Query: 106 QPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKVTVKRTN 145
+PKGYA++EF E +EAL+ N+ E+ GR +++ ++ +N
Sbjct: 522 KPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSN 562
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Query: 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 123
++ +F+ + +SCT EE++ ++ GTV + + T++ G+PKG AYVE+ +S+A Q
Sbjct: 798 LEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 857
Query: 124 ALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGA-IIPPFLYSPYGYGK 182
+ ++ + +KV + +N P K P +P V + GA ++P +Y G G+
Sbjct: 858 VMKMDGMTIRENVIKVAI--SNPPQRKV--PEKPE---VRTAPGAPMLPRQMYGARGKGR 910
Query: 183 IPRFRMP 189
+P
Sbjct: 911 TQLSLLP 917
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 66 DSRSVFVGNVDYSCTPEEVQQH--FQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 123
DS +VFV N+ YS EV+ F+ CG V ++ G +GY YVEF + ++ Q+
Sbjct: 702 DSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSAQQ 761
Query: 124 ALHLNESELHGRQLKVT--VKRTNVPGMKQHR 153
AL L+ + GR + V+ V ++ P K R
Sbjct: 762 ALELDRKIVEGRPMFVSPCVDKSKNPDFKVFR 793
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 29 EEEATALRQMHAKV-GNEMASKQDPAAGGSSLA-NREEVDSRSVFVGNVDYSCTPEEVQQ 86
EE AL+ K+ G E+ ++ A + A N++E DSR++FV N+ YS T EE+Q+
Sbjct: 284 EEVEKALKLTGKKILGTEVKIEKAMAFDKNKTAENKKERDSRTLFVKNIPYSTTVEELQE 343
Query: 87 HFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNE-SELHGRQLKV 139
F++ + I T K G KG AYVEF + +AL + +E+ GR + V
Sbjct: 344 IFEN---AKDIRIPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFV 394
Score = 38.5 bits (88), Expect = 0.030, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 41/71 (57%)
Query: 69 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLN 128
S+F+GN++ + +E++ + + +TI+ + G K + YV+F E V++AL L
Sbjct: 234 SIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRIGNSKKFGYVDFSSEEEVEKALKLT 293
Query: 129 ESELHGRQLKV 139
++ G ++K+
Sbjct: 294 GKKILGTEVKI 304
Score = 38.1 bits (87), Expect = 0.036, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 123
E DS+ + V N+ YS T + +++ F+ ++ I ++ G+ KG+A++EF +E ++
Sbjct: 411 EGDSKVLVVNNLSYSATEDSLREVFEKATSIR---IPQNQ-GRAKGFAFIEFSSAEDAKD 466
Query: 124 AL-HLNESELHGRQLKV 139
A+ N +E+ GR +++
Sbjct: 467 AMDSCNNTEIEGRSIRL 483
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 69 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLN 128
+++V NV+ + T EE+++HF CGT+ + D+ G+ KG+ +V F E +A+
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364
Query: 129 ESEL-HGRQLKVTV 141
++ HG+ L V +
Sbjct: 365 HGQMFHGKPLYVAI 378
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 69 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-L 127
+VFV N+ S T +Q F+ G + + T + G+ +GY +V+F Q +A A+ L
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 128 NESELHGRQLKV 139
N + + +++ V
Sbjct: 173 NSTIVADKEIYV 184
>sp|Q293V6|NCBP2_DROPS Nuclear cap-binding protein subunit 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Cbp20 PE=3 SV=1
Length = 154
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 45 EMASKQDPAAGGS-SLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK 103
E++S +D GS S R DS +++VGN+ + T E++ + F CG V + + DK
Sbjct: 6 ELSSYRDQHFKGSRSEQERSLKDSCTLYVGNLSFYTTEEQIHELFSRCGDVRLIVMGLDK 65
Query: 104 FGQ-PKGYAYVE-FLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFM 161
+ + P G+ +VE +++SEA +N + L R ++V + G + R +
Sbjct: 66 YKKTPCGFCFVEYYIRSEAESAMRFVNGTRLDDRLIRVDWDAGFIEGRQYGRGKTGG--- 122
Query: 162 VYQSRGAIIPPFLYSPYGYGKIPRFRMP 189
Q R + GYGK+ ++
Sbjct: 123 --QVRDEYRTDYDAGRGGYGKLLSLKIA 148
>sp|B4GLK8|NCBP2_DROPE Nuclear cap-binding protein subunit 2 OS=Drosophila persimilis
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 45 EMASKQDPAAGGS-SLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK 103
E++S +D GS S R DS +++VGN+ + T E++ + F CG V + + DK
Sbjct: 6 ELSSYRDQHFKGSRSEQERSLKDSCTLYVGNLSFYTTEEQIHELFSRCGDVRLIVMGLDK 65
Query: 104 FGQ-PKGYAYVE-FLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFM 161
+ + P G+ +VE +++SEA +N + L R ++V + G + R +
Sbjct: 66 YKKTPCGFCFVEYYIRSEAESAMRFVNGTRLDDRLIRVDWDAGFIEGRQYGRGKTGG--- 122
Query: 162 VYQSRGAIIPPFLYSPYGYGKIPRFRMP 189
Q R + GYGK+ ++
Sbjct: 123 --QVRDEYRTDYDAGRGGYGKLLSLKIA 148
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 56/92 (60%), Gaps = 6/92 (6%)
Query: 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL- 125
+++FV ++Y + ++++ F+S G + RV + TD+ +PKGYA++E++ + ++ A
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197
Query: 126 HLNESELHGRQLKVTVKR-TNVPGMKQHRPRR 156
+ ++ GR++ V V+R VP RPRR
Sbjct: 198 QADGQKIDGRRVLVDVERGRTVPNW---RPRR 226
>sp|O57437|DAZLA_XENLA Deleted in azoospermia-like-A OS=Xenopus laevis GN=dazl-a PE=1 SV=1
Length = 286
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 43 GNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD 102
N A+ ++ A + E+ +VFVG +D + E++ F G V V I TD
Sbjct: 8 SNYAATAEEEAVNQGFVLPEGEIMPNTVFVGGIDITMDEIEIRDFFTRFGNVKEVKIITD 67
Query: 103 KFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRP---RRPNP 159
+ G KGY ++ F VQ+ + ++ HG++LK+ + Q RP P P
Sbjct: 68 RTGVSKGYGFISFSDEVDVQKIVK-SQISFHGKKLKLGPAIRKICTYVQPRPVVLSHPTP 126
Query: 160 F 160
F
Sbjct: 127 F 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,772,260
Number of Sequences: 539616
Number of extensions: 2783603
Number of successful extensions: 9996
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 9306
Number of HSP's gapped (non-prelim): 932
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)