Query 029268
Match_columns 196
No_of_seqs 251 out of 2270
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 10:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 4E-22 8.6E-27 145.3 15.2 83 64-146 31-115 (144)
2 TIGR01659 sex-lethal sex-letha 99.8 6E-19 1.3E-23 145.5 15.8 81 65-145 191-275 (346)
3 KOG0113 U1 small nuclear ribon 99.8 1.1E-17 2.3E-22 131.0 15.5 93 65-159 99-193 (335)
4 KOG0121 Nuclear cap-binding pr 99.8 2.2E-18 4.8E-23 119.4 7.9 85 65-149 34-120 (153)
5 PF00076 RRM_1: RNA recognitio 99.7 1.9E-17 4.2E-22 105.6 9.3 69 70-138 1-70 (70)
6 KOG0107 Alternative splicing f 99.7 5E-17 1.1E-21 118.4 12.2 77 66-146 9-86 (195)
7 TIGR01648 hnRNP-R-Q heterogene 99.7 8.8E-17 1.9E-21 139.5 15.9 73 66-145 232-307 (578)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.8E-17 6.1E-22 136.3 11.4 79 67-145 269-349 (352)
9 TIGR01659 sex-lethal sex-letha 99.7 2.9E-17 6.3E-22 135.5 10.8 83 62-144 102-186 (346)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.8E-17 1.3E-21 134.4 11.0 79 67-145 3-83 (352)
11 KOG0105 Alternative splicing f 99.7 8.6E-17 1.9E-21 118.2 9.9 78 66-145 5-83 (241)
12 KOG0149 Predicted RNA-binding 99.7 3.8E-17 8.2E-22 124.2 7.6 80 64-143 9-89 (247)
13 TIGR01645 half-pint poly-U bin 99.7 1.9E-16 4.1E-21 137.8 11.3 78 66-143 106-185 (612)
14 PLN03120 nucleic acid binding 99.7 2.4E-16 5.3E-21 123.2 10.6 76 67-144 4-79 (260)
15 KOG0148 Apoptosis-promoting RN 99.7 1.6E-15 3.4E-20 117.5 13.9 114 28-146 114-239 (321)
16 PF14259 RRM_6: RNA recognitio 99.7 6.8E-16 1.5E-20 98.8 9.7 69 70-138 1-70 (70)
17 KOG0130 RNA-binding protein RB 99.7 2.9E-16 6.2E-21 109.9 7.5 88 60-147 65-154 (170)
18 TIGR01645 half-pint poly-U bin 99.7 1.2E-15 2.6E-20 132.8 12.0 81 66-146 203-285 (612)
19 KOG0122 Translation initiation 99.6 1.3E-15 2.9E-20 116.4 10.3 83 63-145 185-269 (270)
20 TIGR01648 hnRNP-R-Q heterogene 99.6 3.9E-15 8.4E-20 129.3 12.8 77 66-142 57-135 (578)
21 KOG4207 Predicted splicing fac 99.6 3.4E-15 7.4E-20 111.6 10.3 78 66-143 12-91 (256)
22 PLN03121 nucleic acid binding 99.6 4E-15 8.6E-20 114.8 10.7 76 66-143 4-79 (243)
23 KOG0117 Heterogeneous nuclear 99.6 4.6E-15 1E-19 121.8 10.3 78 65-142 81-161 (506)
24 KOG0125 Ataxin 2-binding prote 99.6 3.6E-15 7.8E-20 118.3 9.2 80 64-144 93-173 (376)
25 TIGR01622 SF-CC1 splicing fact 99.6 7.7E-15 1.7E-19 125.8 11.4 81 64-144 86-167 (457)
26 TIGR01628 PABP-1234 polyadenyl 99.6 6.3E-15 1.4E-19 129.5 11.0 80 65-144 283-363 (562)
27 PLN03213 repressor of silencin 99.6 7.1E-15 1.5E-19 122.3 9.7 77 65-144 8-87 (759)
28 TIGR01628 PABP-1234 polyadenyl 99.6 1E-14 2.3E-19 128.1 11.0 76 69-144 2-79 (562)
29 KOG0126 Predicted RNA-binding 99.6 3.2E-16 7E-21 114.9 0.9 79 64-142 32-112 (219)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2E-14 4.2E-19 124.8 12.1 79 66-144 294-374 (509)
31 smart00362 RRM_2 RNA recogniti 99.6 2.7E-14 5.8E-19 90.5 9.4 71 69-140 1-72 (72)
32 TIGR01622 SF-CC1 splicing fact 99.6 1.7E-14 3.7E-19 123.7 11.1 78 67-144 186-265 (457)
33 KOG4209 Splicing factor RNPS1, 99.6 1.5E-14 3.2E-19 112.8 9.3 142 15-156 46-191 (231)
34 KOG0116 RasGAP SH3 binding pro 99.6 5E-14 1.1E-18 117.8 12.9 84 67-150 288-372 (419)
35 KOG0127 Nucleolar protein fibr 99.6 1.1E-14 2.4E-19 122.2 8.4 81 64-144 289-377 (678)
36 KOG0415 Predicted peptidyl pro 99.5 6.8E-14 1.5E-18 112.2 10.8 80 66-145 238-319 (479)
37 KOG0148 Apoptosis-promoting RN 99.5 3.5E-14 7.6E-19 110.1 8.5 80 67-146 62-143 (321)
38 KOG0117 Heterogeneous nuclear 99.5 9.2E-14 2E-18 114.2 11.2 74 66-146 258-332 (506)
39 smart00360 RRM RNA recognition 99.5 9.8E-14 2.1E-18 87.5 8.6 69 72-140 1-71 (71)
40 KOG0111 Cyclophilin-type pepti 99.5 1.5E-14 3.3E-19 109.1 5.5 82 65-146 8-91 (298)
41 cd00590 RRM RRM (RNA recogniti 99.5 2.5E-13 5.4E-18 86.4 10.2 73 69-141 1-74 (74)
42 KOG0144 RNA-binding protein CU 99.5 4.7E-14 1E-18 115.5 7.8 84 65-148 122-209 (510)
43 COG0724 RNA-binding proteins ( 99.5 1.5E-13 3.3E-18 108.5 10.2 77 67-143 115-193 (306)
44 KOG0114 Predicted RNA-binding 99.5 1.7E-13 3.6E-18 91.9 8.3 77 66-144 17-94 (124)
45 KOG0131 Splicing factor 3b, su 99.5 3.8E-14 8.2E-19 104.1 5.7 78 66-143 8-87 (203)
46 KOG4212 RNA-binding protein hn 99.5 3.9E-13 8.6E-18 110.4 11.0 79 66-144 43-123 (608)
47 KOG0108 mRNA cleavage and poly 99.5 1.4E-13 3E-18 115.8 8.3 79 68-146 19-99 (435)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2.8E-13 6E-18 117.0 10.4 74 66-144 1-77 (481)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 3.7E-13 8E-18 116.2 11.1 77 65-145 273-351 (481)
50 KOG0145 RNA-binding protein EL 99.5 6E-13 1.3E-17 102.9 9.9 82 64-145 38-121 (360)
51 KOG0127 Nucleolar protein fibr 99.4 3.1E-13 6.8E-18 113.6 8.4 78 67-144 117-195 (678)
52 KOG0109 RNA-binding protein LA 99.4 2.3E-13 5E-18 106.6 6.1 71 68-145 3-74 (346)
53 KOG0144 RNA-binding protein CU 99.4 6.5E-13 1.4E-17 108.9 8.2 83 62-144 29-116 (510)
54 KOG0124 Polypyrimidine tract-b 99.4 8.5E-13 1.8E-17 106.4 7.9 77 66-142 112-190 (544)
55 smart00361 RRM_1 RNA recogniti 99.3 6.3E-12 1.4E-16 80.5 8.1 59 81-139 2-69 (70)
56 PF13893 RRM_5: RNA recognitio 99.3 7.4E-12 1.6E-16 76.5 7.8 55 84-142 1-56 (56)
57 TIGR01642 U2AF_lg U2 snRNP aux 99.3 5.1E-12 1.1E-16 109.8 9.2 77 62-143 170-258 (509)
58 KOG0145 RNA-binding protein EL 99.3 8.7E-12 1.9E-16 96.5 9.2 78 67-144 278-357 (360)
59 KOG0123 Polyadenylate-binding 99.3 8.7E-12 1.9E-16 103.8 9.4 73 70-144 79-152 (369)
60 KOG0153 Predicted RNA-binding 99.3 1.4E-11 3.1E-16 98.6 9.3 81 59-144 220-302 (377)
61 KOG0147 Transcriptional coacti 99.3 3.1E-12 6.8E-17 107.7 5.8 75 68-142 279-355 (549)
62 KOG0146 RNA-binding protein ET 99.3 3.5E-12 7.6E-17 99.1 5.0 86 61-146 279-366 (371)
63 KOG0109 RNA-binding protein LA 99.3 1.1E-11 2.4E-16 97.2 6.4 75 64-145 75-150 (346)
64 KOG4205 RNA-binding protein mu 99.2 2E-11 4.3E-16 98.8 5.9 81 66-146 5-86 (311)
65 KOG0131 Splicing factor 3b, su 99.2 2.8E-11 6.1E-16 89.1 5.8 82 63-144 92-176 (203)
66 KOG0132 RNA polymerase II C-te 99.2 5.3E-11 1.1E-15 103.8 8.4 77 64-145 418-495 (894)
67 KOG4205 RNA-binding protein mu 99.2 1.3E-10 2.9E-15 94.0 9.5 80 66-145 96-176 (311)
68 KOG4208 Nucleolar RNA-binding 99.2 9.2E-11 2E-15 88.0 7.8 82 63-144 45-129 (214)
69 KOG4661 Hsp27-ERE-TATA-binding 99.1 1.5E-10 3.3E-15 98.2 8.5 81 66-146 404-486 (940)
70 KOG0146 RNA-binding protein ET 99.1 1.4E-10 3.1E-15 90.2 6.6 79 66-144 18-100 (371)
71 KOG4206 Spliceosomal protein s 99.1 4.1E-10 8.8E-15 85.7 8.2 77 68-146 10-91 (221)
72 KOG1548 Transcription elongati 99.1 1E-09 2.2E-14 88.1 10.3 82 63-144 130-220 (382)
73 KOG0533 RRM motif-containing p 99.1 3.6E-09 7.8E-14 82.7 12.6 82 63-144 79-161 (243)
74 KOG0110 RNA-binding protein (R 99.0 9.3E-10 2E-14 95.4 9.1 76 68-143 516-596 (725)
75 KOG0110 RNA-binding protein (R 99.0 2.6E-10 5.6E-15 98.8 5.4 78 67-144 613-692 (725)
76 KOG0106 Alternative splicing f 99.0 5.5E-10 1.2E-14 85.5 6.5 72 68-146 2-74 (216)
77 KOG0124 Polypyrimidine tract-b 99.0 8E-10 1.7E-14 89.4 7.3 79 66-144 209-289 (544)
78 KOG0151 Predicted splicing reg 99.0 3.4E-09 7.3E-14 92.0 11.5 83 62-144 169-256 (877)
79 KOG4212 RNA-binding protein hn 99.0 9.3E-10 2E-14 90.9 6.9 75 64-142 533-608 (608)
80 KOG0123 Polyadenylate-binding 99.0 1.5E-09 3.3E-14 90.4 8.3 73 68-145 2-75 (369)
81 KOG4211 Splicing factor hnRNP- 98.9 5.7E-08 1.2E-12 81.4 13.4 78 65-142 101-179 (510)
82 KOG1457 RNA binding protein (c 98.9 5.5E-08 1.2E-12 74.1 11.4 82 65-146 32-119 (284)
83 KOG4454 RNA binding protein (R 98.8 1.1E-09 2.5E-14 82.9 1.9 76 66-142 8-84 (267)
84 KOG0226 RNA-binding proteins [ 98.8 7.2E-09 1.6E-13 80.2 4.2 80 63-142 186-267 (290)
85 KOG1995 Conserved Zn-finger pr 98.7 9.9E-08 2.2E-12 77.3 9.3 83 64-146 63-155 (351)
86 KOG4211 Splicing factor hnRNP- 98.7 7.7E-08 1.7E-12 80.7 8.2 76 66-143 9-84 (510)
87 KOG4660 Protein Mei2, essentia 98.6 5E-08 1.1E-12 82.9 5.4 72 63-138 71-143 (549)
88 PF04059 RRM_2: RNA recognitio 98.6 6.4E-07 1.4E-11 60.5 9.1 77 68-144 2-86 (97)
89 KOG0147 Transcriptional coacti 98.5 4.9E-08 1.1E-12 82.8 2.7 85 58-142 170-255 (549)
90 KOG4849 mRNA cleavage factor I 98.5 7.9E-07 1.7E-11 71.9 8.4 76 66-141 79-158 (498)
91 KOG4210 Nuclear localization s 98.5 1.9E-07 4.2E-12 75.3 4.5 81 66-146 183-265 (285)
92 KOG0120 Splicing factor U2AF, 98.4 1.8E-07 3.9E-12 79.8 4.0 79 66-144 288-368 (500)
93 KOG1190 Polypyrimidine tract-b 98.3 2.9E-06 6.3E-11 70.0 8.4 75 67-145 297-373 (492)
94 COG5175 MOT2 Transcriptional r 98.3 5.9E-06 1.3E-10 66.7 9.5 77 66-142 113-200 (480)
95 PF11608 Limkain-b1: Limkain b 98.2 5.2E-06 1.1E-10 54.0 6.5 67 68-143 3-75 (90)
96 KOG0106 Alternative splicing f 98.2 1.1E-06 2.4E-11 67.5 2.9 71 64-141 96-167 (216)
97 PF08777 RRM_3: RNA binding mo 98.2 7.8E-06 1.7E-10 56.3 6.4 69 68-141 2-76 (105)
98 KOG1365 RNA-binding protein Fu 98.1 5.1E-05 1.1E-09 62.4 11.3 77 67-143 280-360 (508)
99 KOG3152 TBP-binding protein, a 98.1 5.6E-07 1.2E-11 69.9 0.1 71 66-136 73-157 (278)
100 KOG1457 RNA binding protein (c 98.0 6.1E-06 1.3E-10 63.1 4.2 62 68-132 211-273 (284)
101 KOG0105 Alternative splicing f 98.0 8E-05 1.7E-09 55.6 9.8 62 66-133 114-176 (241)
102 KOG4206 Spliceosomal protein s 98.0 4.5E-05 9.7E-10 58.5 7.9 76 64-143 143-220 (221)
103 KOG4307 RNA binding protein RB 97.9 4.1E-05 8.9E-10 67.2 7.8 75 67-141 867-943 (944)
104 KOG1456 Heterogeneous nuclear 97.8 0.00013 2.9E-09 59.8 8.4 76 65-144 285-362 (494)
105 KOG1456 Heterogeneous nuclear 97.8 0.001 2.2E-08 54.8 12.8 76 67-146 120-200 (494)
106 PF14605 Nup35_RRM_2: Nup53/35 97.8 9E-05 1.9E-09 44.5 5.2 52 68-125 2-53 (53)
107 KOG0129 Predicted RNA-binding 97.7 0.0002 4.3E-09 61.0 7.6 81 61-142 364-451 (520)
108 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00033 7.1E-09 47.7 7.1 76 66-142 5-89 (100)
109 KOG1855 Predicted RNA-binding 97.6 0.00013 2.9E-09 60.7 6.0 69 60-128 224-306 (484)
110 KOG1190 Polypyrimidine tract-b 97.6 0.00021 4.6E-09 59.2 6.9 76 66-144 413-490 (492)
111 PF08952 DUF1866: Domain of un 97.5 0.00046 1E-08 49.8 7.2 55 83-144 52-106 (146)
112 KOG0129 Predicted RNA-binding 97.4 0.00029 6.4E-09 60.0 5.7 62 63-125 255-323 (520)
113 KOG2314 Translation initiation 97.4 0.0004 8.6E-09 59.8 6.4 76 66-141 57-140 (698)
114 KOG1365 RNA-binding protein Fu 97.4 0.00014 2.9E-09 60.0 3.4 74 68-141 162-239 (508)
115 KOG0120 Splicing factor U2AF, 97.4 0.00066 1.4E-08 58.5 7.2 60 84-143 426-490 (500)
116 KOG1548 Transcription elongati 97.3 0.00093 2E-08 54.4 7.3 78 64-144 262-351 (382)
117 KOG0112 Large RNA-binding prot 97.3 0.00036 7.9E-09 62.9 4.6 77 63-144 451-530 (975)
118 KOG4676 Splicing factor, argin 97.3 0.00049 1.1E-08 56.9 5.0 76 68-143 8-87 (479)
119 KOG0128 RNA-binding protein SA 97.1 0.0002 4.2E-09 64.3 1.7 78 67-144 736-814 (881)
120 KOG2202 U2 snRNP splicing fact 97.1 0.00021 4.6E-09 55.8 1.8 60 83-142 84-145 (260)
121 KOG2416 Acinus (induces apopto 97.1 0.00046 1E-08 59.8 3.1 75 64-143 441-520 (718)
122 KOG1996 mRNA splicing factor [ 97.0 0.0033 7.2E-08 50.2 6.9 61 82-142 301-364 (378)
123 PF10309 DUF2414: Protein of u 96.9 0.0083 1.8E-07 37.0 7.0 53 66-125 4-59 (62)
124 KOG4307 RNA binding protein RB 96.8 0.0009 1.9E-08 59.1 2.6 76 66-141 433-510 (944)
125 KOG0112 Large RNA-binding prot 96.5 0.00054 1.2E-08 61.9 -0.3 81 62-142 367-448 (975)
126 KOG0115 RNA-binding protein p5 96.5 0.0036 7.8E-08 49.1 3.9 76 68-143 32-112 (275)
127 KOG2068 MOT2 transcription fac 96.4 0.0015 3.2E-08 53.1 1.4 77 66-142 76-160 (327)
128 KOG0128 RNA-binding protein SA 96.4 0.00021 4.7E-09 64.0 -3.8 67 68-134 668-735 (881)
129 PF15023 DUF4523: Protein of u 96.0 0.046 1E-06 39.4 7.1 74 63-143 82-160 (166)
130 KOG2193 IGF-II mRNA-binding pr 95.8 0.01 2.2E-07 49.8 3.8 70 68-142 2-73 (584)
131 PRK11634 ATP-dependent RNA hel 95.7 0.23 4.9E-06 44.8 12.1 69 68-144 487-562 (629)
132 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.021 4.5E-07 43.0 4.0 77 66-142 6-95 (176)
133 PF07576 BRAP2: BRCA1-associat 95.5 0.29 6.2E-06 33.9 9.4 66 68-134 14-81 (110)
134 PF11767 SET_assoc: Histone ly 95.4 0.12 2.5E-06 32.4 6.5 54 78-139 11-65 (66)
135 KOG2135 Proteins containing th 95.2 0.013 2.9E-07 49.7 2.3 74 66-144 371-445 (526)
136 PF04847 Calcipressin: Calcipr 94.9 0.1 2.2E-06 39.5 6.3 61 80-145 8-71 (184)
137 PF08675 RNA_bind: RNA binding 94.8 0.16 3.5E-06 33.2 6.0 54 67-128 9-63 (87)
138 KOG2253 U1 snRNP complex, subu 94.7 0.027 5.9E-07 49.7 3.0 72 63-142 36-108 (668)
139 KOG2591 c-Mpl binding protein, 94.4 0.11 2.3E-06 45.3 5.8 72 64-141 172-248 (684)
140 KOG4285 Mitotic phosphoprotein 94.4 0.25 5.5E-06 39.9 7.5 69 67-141 197-266 (350)
141 PF03880 DbpA: DbpA RNA bindin 94.1 0.5 1.1E-05 30.1 7.2 66 69-142 2-74 (74)
142 KOG4574 RNA-binding protein (c 91.9 0.11 2.5E-06 47.3 2.4 73 69-146 300-375 (1007)
143 KOG4660 Protein Mei2, essentia 91.5 0.37 8.1E-06 41.9 4.9 77 68-144 389-472 (549)
144 KOG2318 Uncharacterized conser 91.4 0.81 1.8E-05 40.2 6.8 78 64-141 171-304 (650)
145 KOG4210 Nuclear localization s 91.4 0.23 5E-06 40.3 3.5 77 66-142 87-165 (285)
146 KOG4483 Uncharacterized conser 90.0 3.4 7.4E-05 34.9 9.1 56 66-127 390-446 (528)
147 KOG0804 Cytoplasmic Zn-finger 89.7 2.1 4.5E-05 36.7 7.7 67 67-134 74-142 (493)
148 KOG4019 Calcineurin-mediated s 86.5 1.4 3E-05 33.2 4.2 75 68-147 11-92 (193)
149 KOG4676 Splicing factor, argin 85.3 0.089 1.9E-06 43.9 -2.7 67 67-136 151-217 (479)
150 KOG4410 5-formyltetrahydrofola 85.3 2.6 5.7E-05 34.0 5.6 46 68-118 331-377 (396)
151 PF07530 PRE_C2HC: Associated 81.6 3.4 7.3E-05 25.9 4.0 61 82-144 2-64 (68)
152 KOG2193 IGF-II mRNA-binding pr 81.2 0.15 3.2E-06 43.1 -3.0 75 66-142 79-154 (584)
153 KOG4454 RNA binding protein (R 79.0 0.39 8.5E-06 37.2 -1.1 64 67-130 80-148 (267)
154 PF15513 DUF4651: Domain of un 77.7 7.1 0.00015 24.0 4.3 19 82-100 9-27 (62)
155 smart00596 PRE_C2HC PRE_C2HC d 75.9 6.2 0.00013 24.8 3.8 61 82-144 2-64 (69)
156 PF03468 XS: XS domain; Inter 75.7 7 0.00015 27.3 4.5 49 79-129 29-78 (116)
157 PF10567 Nab6_mRNP_bdg: RNA-re 73.4 7.6 0.00017 31.5 4.7 80 63-142 11-105 (309)
158 KOG2295 C2H2 Zn-finger protein 67.3 0.74 1.6E-05 40.3 -2.3 71 66-136 230-302 (648)
159 KOG4008 rRNA processing protei 61.9 8 0.00017 30.4 2.6 33 65-97 38-70 (261)
160 PF09707 Cas_Cas2CT1978: CRISP 60.0 23 0.0005 23.3 4.2 48 68-117 26-73 (86)
161 KOG4213 RNA-binding protein La 59.6 16 0.00035 27.6 3.8 59 66-129 110-171 (205)
162 KOG0156 Cytochrome P450 CYP2 s 57.1 24 0.00052 31.0 5.1 59 71-137 36-97 (489)
163 KOG2891 Surface glycoprotein [ 53.6 14 0.00031 29.8 2.9 36 66-101 148-195 (445)
164 PF07292 NID: Nmi/IFP 35 domai 53.5 20 0.00044 23.7 3.2 31 111-141 1-33 (88)
165 PF07292 NID: Nmi/IFP 35 domai 49.8 10 0.00022 25.1 1.3 26 63-88 48-73 (88)
166 KOG3973 Uncharacterized conser 49.6 43 0.00093 28.1 5.0 10 174-183 365-374 (465)
167 COG0724 RNA-binding proteins ( 46.7 34 0.00073 26.1 4.1 41 63-103 221-261 (306)
168 KOG4365 Uncharacterized conser 44.9 3.8 8.3E-05 35.1 -1.6 75 68-143 4-80 (572)
169 KOG3973 Uncharacterized conser 42.4 50 0.0011 27.7 4.4 7 70-76 297-303 (465)
170 COG5193 LHP1 La protein, small 41.8 12 0.00026 31.8 0.8 59 67-125 174-243 (438)
171 PRK11558 putative ssRNA endonu 40.8 58 0.0013 22.0 3.9 49 68-118 28-76 (97)
172 PRK14548 50S ribosomal protein 38.0 1.2E+02 0.0025 19.9 5.7 53 71-125 24-78 (84)
173 TIGR03636 L23_arch archaeal ri 35.9 1.2E+02 0.0026 19.5 5.6 53 70-124 16-70 (77)
174 PF14893 PNMA: PNMA 35.3 41 0.00089 28.0 3.0 51 67-117 18-71 (331)
175 PRK10590 ATP-dependent RNA hel 34.9 1.8E+02 0.004 25.0 7.1 8 108-115 342-349 (456)
176 PRK01178 rps24e 30S ribosomal 34.7 1.5E+02 0.0032 20.1 5.2 45 78-123 30-80 (99)
177 COG0030 KsgA Dimethyladenosine 33.7 67 0.0014 25.8 3.9 32 68-99 96-127 (259)
178 PF05918 API5: Apoptosis inhib 33.0 14 0.00031 32.9 0.0 8 19-26 377-384 (556)
179 PF00398 RrnaAD: Ribosomal RNA 32.3 52 0.0011 26.1 3.1 29 66-94 96-126 (262)
180 PHA02585 16 small terminase pr 31.2 1.9E+02 0.0042 21.2 5.5 62 12-74 76-137 (161)
181 KOG3424 40S ribosomal protein 31.1 1.9E+02 0.0041 20.3 5.5 44 78-122 34-83 (132)
182 PF11053 DNA_Packaging: Termin 31.0 84 0.0018 23.1 3.6 62 12-73 79-140 (153)
183 PF05189 RTC_insert: RNA 3'-te 30.4 1.1E+02 0.0024 20.4 4.1 47 69-115 12-64 (103)
184 PTZ00071 40S ribosomal protein 29.8 2E+02 0.0043 20.6 5.3 44 78-122 35-85 (132)
185 PF11411 DNA_ligase_IV: DNA li 29.4 43 0.00094 18.2 1.5 16 77-92 19-34 (36)
186 KOG1295 Nonsense-mediated deca 29.2 68 0.0015 27.1 3.3 66 67-132 7-77 (376)
187 PF02714 DUF221: Domain of unk 27.4 65 0.0014 26.3 3.0 32 111-144 1-33 (325)
188 PRK11230 glycolate oxidase sub 26.5 3.2E+02 0.0068 24.2 7.2 47 81-127 203-254 (499)
189 PF15407 Spo7_2_N: Sporulation 25.1 23 0.0005 22.1 -0.1 27 63-89 23-49 (67)
190 PF04026 SpoVG: SpoVG; InterP 23.6 1.9E+02 0.004 18.9 4.0 44 93-142 2-48 (84)
191 KOG1232 Proteins containing th 22.7 1.2E+02 0.0026 26.0 3.6 48 78-125 235-286 (511)
192 TIGR01873 cas_CT1978 CRISPR-as 22.2 1.9E+02 0.004 19.1 3.8 47 68-117 26-74 (87)
193 PF03439 Spt5-NGN: Early trans 22.0 2E+02 0.0043 18.5 4.0 34 93-130 33-67 (84)
194 COG2608 CopZ Copper chaperone 22.0 2.1E+02 0.0045 17.7 4.4 45 68-117 4-48 (71)
195 PHA01632 hypothetical protein 21.8 1.1E+02 0.0024 18.3 2.3 21 70-90 19-39 (64)
196 PRK13259 regulatory protein Sp 20.4 2.1E+02 0.0046 19.2 3.8 25 93-117 2-27 (94)
197 PRK00274 ksgA 16S ribosomal RN 20.2 1.3E+02 0.0028 24.0 3.4 22 69-90 107-128 (272)
198 PRK11901 hypothetical protein; 20.2 2.8E+02 0.006 23.1 5.2 50 78-129 253-306 (327)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.89 E-value=4e-22 Score=145.35 Aligned_cols=83 Identities=22% Similarity=0.505 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
...+++|||+|||+.+++++|+++|.+||.|.+|.|+.++ +++++|||||+|.+.++|+.|| .||++.|+|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999998 8999999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97654
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.82 E-value=6e-19 Score=145.47 Aligned_cols=81 Identities=28% Similarity=0.493 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCC--eEeEEE
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHG--RQLKVT 140 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g--~~i~v~ 140 (196)
...++|||+|||..+|+++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++|| .||++.|.+ +.|.|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 345789999999999999999999999999999999988 8999999999999999999999 799998866 789999
Q ss_pred eccCC
Q 029268 141 VKRTN 145 (196)
Q Consensus 141 ~~~~~ 145 (196)
++...
T Consensus 271 ~a~~~ 275 (346)
T TIGR01659 271 LAEEH 275 (346)
T ss_pred ECCcc
Confidence 88654
No 3
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.1e-17 Score=130.97 Aligned_cols=93 Identities=26% Similarity=0.561 Sum_probs=84.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
.+-++|||+.|++.++|..|+..|+.||+|..|+|+.+. ||+++|||||+|.++.++.+|. ..+|+.|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 467899999999999999999999999999999999998 9999999999999999999999 79999999999999998
Q ss_pred cCCCCCCCCCCCCCCCC
Q 029268 143 RTNVPGMKQHRPRRPNP 159 (196)
Q Consensus 143 ~~~~~~~~~~~~r~~~~ 159 (196)
+.+. ...|.+|+-++
T Consensus 179 RgRT--vkgW~PRRLGG 193 (335)
T KOG0113|consen 179 RGRT--VKGWLPRRLGG 193 (335)
T ss_pred cccc--ccccccccccC
Confidence 7654 45677777443
No 4
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=2.2e-18 Score=119.39 Aligned_cols=85 Identities=26% Similarity=0.564 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
..+++||||||+..++|++|.++|+++|.|..|.+-.|+ +..++|||||+|.+.++|..|| -++++.|+.+.|.|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 367899999999999999999999999999999999998 7889999999999999999999 69999999999999998
Q ss_pred cCCCCCC
Q 029268 143 RTNVPGM 149 (196)
Q Consensus 143 ~~~~~~~ 149 (196)
..-..+.
T Consensus 114 ~GF~eGR 120 (153)
T KOG0121|consen 114 AGFVEGR 120 (153)
T ss_pred ccchhhh
Confidence 6654433
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=1.9e-17 Score=105.58 Aligned_cols=69 Identities=33% Similarity=0.688 Sum_probs=66.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeE
Q 029268 70 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 138 (196)
Q Consensus 70 l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~ 138 (196)
|||+|||.++|+++|+++|++||.|..+.+..+.++..+++|||+|.+.++|+.|+ .+++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999998878899999999999999999999 6999999999885
No 6
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=5e-17 Score=118.41 Aligned_cols=77 Identities=23% Similarity=0.503 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
-.++||||||+..++..+|..+|..||+|..|+|-..+ .|||||+|++..+|+.|+ .|||..|+|..|.|+++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 36799999999999999999999999999999997654 899999999999999999 8999999999999999976
Q ss_pred CC
Q 029268 145 NV 146 (196)
Q Consensus 145 ~~ 146 (196)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 54
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.74 E-value=8.8e-17 Score=139.49 Aligned_cols=73 Identities=30% Similarity=0.514 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhc--CceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSC--GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
..++|||+||++++++++|+++|++| |.|.+|.++ ++||||+|.+.++|++|| .||+..|+|+.|+|.++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 35789999999999999999999999 999999876 569999999999999999 79999999999999999
Q ss_pred cCC
Q 029268 143 RTN 145 (196)
Q Consensus 143 ~~~ 145 (196)
++.
T Consensus 305 kp~ 307 (578)
T TIGR01648 305 KPV 307 (578)
T ss_pred cCC
Confidence 764
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.73 E-value=2.8e-17 Score=136.31 Aligned_cols=79 Identities=29% Similarity=0.375 Sum_probs=75.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
..+|||+|||+.+++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|..|| .|||..|+|+.|+|.++..
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 3479999999999999999999999999999999998 8999999999999999999999 7999999999999999865
Q ss_pred C
Q 029268 145 N 145 (196)
Q Consensus 145 ~ 145 (196)
+
T Consensus 349 ~ 349 (352)
T TIGR01661 349 K 349 (352)
T ss_pred C
Confidence 4
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=2.9e-17 Score=135.52 Aligned_cols=83 Identities=27% Similarity=0.408 Sum_probs=76.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
......++|||+|||+++|+++|+++|+.||.|..|+|+.+. +++++|||||+|.++++|+.|| .||++.|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 344567899999999999999999999999999999999997 8999999999999999999999 79999999999999
Q ss_pred EeccC
Q 029268 140 TVKRT 144 (196)
Q Consensus 140 ~~~~~ 144 (196)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 87643
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=5.8e-17 Score=134.41 Aligned_cols=79 Identities=28% Similarity=0.519 Sum_probs=74.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
..+|||+|||..+++++|+++|+.||+|.+|+|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 5689999999999999999999999999999999997 8999999999999999999999 7999999999999998865
Q ss_pred C
Q 029268 145 N 145 (196)
Q Consensus 145 ~ 145 (196)
.
T Consensus 83 ~ 83 (352)
T TIGR01661 83 S 83 (352)
T ss_pred c
Confidence 3
No 11
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=8.6e-17 Score=118.24 Aligned_cols=78 Identities=23% Similarity=0.497 Sum_probs=70.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
.+++|||+|||.++.+.+|.++|.+||.|..|.|...+ ....||||+|++..+|+.|| .-++..++|+.|+|++++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 56899999999999999999999999999999986432 34679999999999999999 7999999999999999976
Q ss_pred C
Q 029268 145 N 145 (196)
Q Consensus 145 ~ 145 (196)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 3
No 12
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=3.8e-17 Score=124.22 Aligned_cols=80 Identities=25% Similarity=0.486 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
+..-++||||+|+|.+..+.|+++|++||+|++..|+.|+ +++++||+||+|.+.++|.+||+-.+-.|+||+..|.+|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 3455789999999999999999999999999999999999 899999999999999999999977778899999999887
Q ss_pred c
Q 029268 143 R 143 (196)
Q Consensus 143 ~ 143 (196)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 3
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.69 E-value=1.9e-16 Score=137.76 Aligned_cols=78 Identities=29% Similarity=0.530 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
..++|||+|||+.+++++|+++|.+||.|.+|.|+.++ +++++|||||+|.+.++|+.|| .||+..|.|+.|+|....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46799999999999999999999999999999999997 8999999999999999999999 799999999999998654
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.69 E-value=2.4e-16 Score=123.19 Aligned_cols=76 Identities=22% Similarity=0.393 Sum_probs=71.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|+.||.||+..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999988752 47899999999999999999999999999999999864
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.6e-15 Score=117.53 Aligned_cols=114 Identities=25% Similarity=0.434 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhhccccccCCCCCCCCC-----------CccCcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeE
Q 029268 28 MEEEATALRQMHAKVGNEMASKQDPAAGGS-----------SLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR 96 (196)
Q Consensus 28 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~ 96 (196)
.+++..++.+|..++.-...........+. ..-++.+...++||||||+..+|+++|++.|+.||+|.+
T Consensus 114 k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~E 193 (321)
T KOG0148|consen 114 KEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQE 193 (321)
T ss_pred hHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceE
Confidence 466667788888776644332221111111 112345667899999999999999999999999999999
Q ss_pred EEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccCCC
Q 029268 97 VTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNV 146 (196)
Q Consensus 97 ~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~~~ 146 (196)
|+|.++ +|||||.|.++|+|..|| .+|+.+|.|..++|.|-+...
T Consensus 194 VRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 194 VRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred EEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 999988 899999999999999999 899999999999999987643
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.67 E-value=6.8e-16 Score=98.78 Aligned_cols=69 Identities=38% Similarity=0.673 Sum_probs=63.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeE
Q 029268 70 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 138 (196)
Q Consensus 70 l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~ 138 (196)
|||+|||+++++++|+++|+.||.|..+.+..++.+.++++|||+|.+.++|..|+ .+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877889999999999999999999 6788999999875
No 17
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=2.9e-16 Score=109.91 Aligned_cols=88 Identities=28% Similarity=0.470 Sum_probs=81.1
Q ss_pred cCcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEe
Q 029268 60 ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQL 137 (196)
Q Consensus 60 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i 137 (196)
..+.++..-.|||.++...+|+++|.+.|..||+|.+|.|..|+ ||..+|||+|+|.+.+.|++|| .+|+..|.|+.|
T Consensus 65 gPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 34566778899999999999999999999999999999999998 9999999999999999999999 899999999999
Q ss_pred EEEeccCCCC
Q 029268 138 KVTVKRTNVP 147 (196)
Q Consensus 138 ~v~~~~~~~~ 147 (196)
.|.|+....|
T Consensus 145 ~VDw~Fv~gp 154 (170)
T KOG0130|consen 145 SVDWCFVKGP 154 (170)
T ss_pred eEEEEEecCC
Confidence 9999965443
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.65 E-value=1.2e-15 Score=132.84 Aligned_cols=81 Identities=20% Similarity=0.349 Sum_probs=76.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
..++|||+|||.++++++|+++|+.||.|.+|+|..++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999998 7889999999999999999999 899999999999999987
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
.++
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 643
No 19
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.3e-15 Score=116.37 Aligned_cols=83 Identities=27% Similarity=0.437 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
...+..+|-|.||+.++++++|+++|..||.|..|.|..|+ ||.++|||||.|.+.++|.+|| .|||+-++..-|.|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 33467789999999999999999999999999999999999 8999999999999999999999 799999999999999
Q ss_pred eccCC
Q 029268 141 VKRTN 145 (196)
Q Consensus 141 ~~~~~ 145 (196)
|+++.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99874
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.63 E-value=3.9e-15 Score=129.33 Aligned_cols=77 Identities=32% Similarity=0.539 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeC-CeEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~-g~~i~v~~~ 142 (196)
..++|||+|||+++++++|+++|++||.|.+|+|+.|.+++++|||||+|.+.++|++|| .||+..|. ++.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 568999999999999999999999999999999999988999999999999999999999 79998885 676666543
No 21
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.63 E-value=3.4e-15 Score=111.61 Aligned_cols=78 Identities=31% Similarity=0.605 Sum_probs=74.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
....|-|-||.+-|+.++|+.+|++||.|-+|.|++|+ |..++|||||-|....+|+.|+ .|+|.+|+|+.|.|..|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45679999999999999999999999999999999999 9999999999999999999999 899999999999999885
No 22
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.62 E-value=4e-15 Score=114.77 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=70.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~ 143 (196)
...+|||+||++.+|+++|++||+.||.|.+|.|+.+. ..++||||+|.++++++.||.|+|..|.++.|.|...-
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999874 44689999999999999999999999999999999864
No 23
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=4.6e-15 Score=121.80 Aligned_cols=78 Identities=32% Similarity=0.535 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCee-CCeEeEEEe
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESEL-HGRQLKVTV 141 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~-~g~~i~v~~ 141 (196)
...+.||||.||.++.|++|..+|++.|+|-+++|+.|+ +|.++|||||+|.+.+.|+.|| .||+++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 567899999999999999999999999999999999997 8999999999999999999999 7999998 489999886
Q ss_pred c
Q 029268 142 K 142 (196)
Q Consensus 142 ~ 142 (196)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 6
No 24
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=3.6e-15 Score=118.25 Aligned_cols=80 Identities=19% Similarity=0.374 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
....++|+|.|||+...+-||+.+|.+||+|.+|.|+.+. ..+|||+||+|.+.++|++|- +|||..+.||+|+|..+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 3356899999999999999999999999999999998753 456999999999999999999 89999999999999987
Q ss_pred cC
Q 029268 143 RT 144 (196)
Q Consensus 143 ~~ 144 (196)
-.
T Consensus 172 Ta 173 (376)
T KOG0125|consen 172 TA 173 (376)
T ss_pred ch
Confidence 44
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=7.7e-15 Score=125.82 Aligned_cols=81 Identities=33% Similarity=0.488 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
+...++|||+|||..+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+||.|++..|.|+.|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 4457899999999999999999999999999999999997 799999999999999999999999999999999999886
Q ss_pred cC
Q 029268 143 RT 144 (196)
Q Consensus 143 ~~ 144 (196)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 53
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.60 E-value=6.3e-15 Score=129.49 Aligned_cols=80 Identities=24% Similarity=0.511 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
....+|||+||++.+++++|+++|++||.|.+|+|+.+.++.++|||||+|.+.++|.+|| .||+..|+|+.|.|.++.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 3567899999999999999999999999999999999988999999999999999999999 799999999999999986
Q ss_pred C
Q 029268 144 T 144 (196)
Q Consensus 144 ~ 144 (196)
.
T Consensus 363 ~ 363 (562)
T TIGR01628 363 R 363 (562)
T ss_pred C
Confidence 5
No 27
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=7.1e-15 Score=122.27 Aligned_cols=77 Identities=21% Similarity=0.396 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCH--HHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQS--EAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~--~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
....+||||||++.+++++|..+|..||.|..|.|++. +| +|||||+|.+. .++.+|| .|||..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35578999999999999999999999999999999933 56 99999999987 6799999 7999999999999998
Q ss_pred ccC
Q 029268 142 KRT 144 (196)
Q Consensus 142 ~~~ 144 (196)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 865
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.58 E-value=1e-14 Score=128.09 Aligned_cols=76 Identities=26% Similarity=0.488 Sum_probs=72.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 69 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 69 ~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
+|||+|||.++|+++|+++|++||.|.+|+|+++. +++++|||||+|.+.++|++|| .+|+..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 69999999999999999999999999999999998 7999999999999999999999 7999999999999999753
No 29
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=3.2e-16 Score=114.86 Aligned_cols=79 Identities=24% Similarity=0.463 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
-.++.-|||||||+..|+.+|--+|++||.|++|.|++|. ||+++||||+.|++..+..-|+ .|||+.|.|+.|+|.-
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 3467789999999999999999999999999999999998 9999999999999999999899 8999999999999985
Q ss_pred c
Q 029268 142 K 142 (196)
Q Consensus 142 ~ 142 (196)
.
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 4
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.58 E-value=2e-14 Score=124.84 Aligned_cols=79 Identities=20% Similarity=0.408 Sum_probs=74.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
..++|||+|||..+++++|+++|..||.|..+.|+.+. ++.++|||||+|.+.++|..|| .||+..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999987 8999999999999999999999 799999999999999985
Q ss_pred C
Q 029268 144 T 144 (196)
Q Consensus 144 ~ 144 (196)
.
T Consensus 374 ~ 374 (509)
T TIGR01642 374 V 374 (509)
T ss_pred c
Confidence 4
No 31
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=2.7e-14 Score=90.46 Aligned_cols=71 Identities=38% Similarity=0.700 Sum_probs=65.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 69 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 69 ~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
+|||+|||..+++++|+++|.+||.|..+.+..+. +.++++|||+|.+.+.|+.|+ .+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 778899999999999999999 799999999998873
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.57 E-value=1.7e-14 Score=123.66 Aligned_cols=78 Identities=32% Similarity=0.618 Sum_probs=74.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
.++|||+|||..+++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|..|| .||+..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999999999999999999999999999988 6799999999999999999999 7999999999999999753
No 33
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=1.5e-14 Score=112.81 Aligned_cols=142 Identities=42% Similarity=0.613 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCC---CCCCccCcCCCCCceEEEcCCCCCCCHHHHHHHhhhc
Q 029268 15 QVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAA---GGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSC 91 (196)
Q Consensus 15 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~ 91 (196)
.-++........+++..+..++.++..+...+........ .........+.+...+||+|+.+.+|.+++...|+.|
T Consensus 46 ~~~i~~~~~~~~e~e~~i~~le~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~C 125 (231)
T KOG4209|consen 46 NFKISANYNRSSEKEWEITKLERMCPATVKPLMDLSLKAAVVVKEKFPERQKEVDAPSVWVGNVDFLVTLTKIELHFESC 125 (231)
T ss_pred CcccchhhcccccchhhhHHHHhhchhhhhhhhhcccccchhhhhcchhhhhccCCceEEEeccccccccchhhheeecc
Confidence 5667777777778888888898888877775443332211 1222234567788999999999999999999999999
Q ss_pred CceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccCCCCCCCCCCCCC
Q 029268 92 GTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRR 156 (196)
Q Consensus 92 G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~~~~~~~~~~~r~ 156 (196)
|.|..+.|+.++ .+++++|+||+|.+.+.+..++.||+..|.++.|.|.+.+-+.++.+...+.+
T Consensus 126 g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~~~pg~~~~~~~~ 191 (231)
T KOG4209|consen 126 GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRTNVPGMGRSSPPR 191 (231)
T ss_pred CCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeeeecCCcCCCCCCc
Confidence 999999999998 67899999999999999999999999999999999999988877766555443
No 34
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.56 E-value=5e-14 Score=117.75 Aligned_cols=84 Identities=30% Similarity=0.479 Sum_probs=72.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccCC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 145 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~~ 145 (196)
...|||.|||.+++..+|+++|..||.|+...|.... .++..+||||+|.+.++++.||..+...|++++|.|+..++.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 4569999999999999999999999999988886543 455559999999999999999987789999999999999876
Q ss_pred CCCCC
Q 029268 146 VPGMK 150 (196)
Q Consensus 146 ~~~~~ 150 (196)
..+..
T Consensus 368 ~~g~~ 372 (419)
T KOG0116|consen 368 FRGNG 372 (419)
T ss_pred ccccc
Confidence 54433
No 35
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.1e-14 Score=122.15 Aligned_cols=81 Identities=37% Similarity=0.556 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hh-----CC-CeeCCe
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HL-----NE-SELHGR 135 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l-----~~-~~~~g~ 135 (196)
.....+|||.|||+++|+++|.+.|++||.|..+.|+.++ |++++|.|||.|.+..+|..|| .. .+ ..|.|+
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 3456899999999999999999999999999999999998 8999999999999999999999 33 33 678999
Q ss_pred EeEEEeccC
Q 029268 136 QLKVTVKRT 144 (196)
Q Consensus 136 ~i~v~~~~~ 144 (196)
.|.|..+-.
T Consensus 369 ~Lkv~~Av~ 377 (678)
T KOG0127|consen 369 LLKVTLAVT 377 (678)
T ss_pred EEeeeeccc
Confidence 999998854
No 36
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.8e-14 Score=112.15 Aligned_cols=80 Identities=20% Similarity=0.410 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
+...|||..|.+-++.++|.-+|+.||.|.+|.|++|+ ||.+..||||+|.+.+++++|. .|++..|+.+.|.|.++.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 45689999999999999999999999999999999998 9999999999999999999999 999999999999999986
Q ss_pred CC
Q 029268 144 TN 145 (196)
Q Consensus 144 ~~ 145 (196)
+.
T Consensus 318 SV 319 (479)
T KOG0415|consen 318 SV 319 (479)
T ss_pred hh
Confidence 53
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.5e-14 Score=110.09 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=75.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
...|||+.|...++-++|++.|.+||+|.+++|++|. |+++|||+||.|...++|+.|| .|||..|++|.|+-.|+-.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 5679999999999999999999999999999999998 8999999999999999999999 8999999999999999955
Q ss_pred CC
Q 029268 145 NV 146 (196)
Q Consensus 145 ~~ 146 (196)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 43
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=9.2e-14 Score=114.25 Aligned_cols=74 Identities=31% Similarity=0.489 Sum_probs=68.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
.-+.|||.||+.+||++.|+++|.+||.|+.|+.++| ||||.|.+.++|.+|+ .+|++.|+|..|.|.+|++
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 4578999999999999999999999999999988854 9999999999999999 7999999999999999987
Q ss_pred CC
Q 029268 145 NV 146 (196)
Q Consensus 145 ~~ 146 (196)
.-
T Consensus 331 ~~ 332 (506)
T KOG0117|consen 331 VD 332 (506)
T ss_pred hh
Confidence 43
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.52 E-value=9.8e-14 Score=87.49 Aligned_cols=69 Identities=43% Similarity=0.688 Sum_probs=64.3
Q ss_pred EcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 72 VGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 72 v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
|+|||..+++++|+++|.+||.|..+.+..++ ++.++++|||+|.+.++|..|+ .+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887 6889999999999999999999 799999999998873
No 40
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.5e-14 Score=109.13 Aligned_cols=82 Identities=27% Similarity=0.534 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
...++||||+|...+++.-|...|-.||.|..|.++.|. +++.+||+||+|...++|.+|| .||..+|.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 356799999999999999999999999999999999998 8999999999999999999999 89999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
++.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8743
No 41
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.51 E-value=2.5e-13 Score=86.38 Aligned_cols=73 Identities=41% Similarity=0.647 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 69 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 69 ~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
+|+|+|||..+++++|+++|..+|.|..+.+..+....++++|||+|.+.++|..|+ .+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998876678999999999999999999 7999999999998864
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=4.7e-14 Score=115.55 Aligned_cols=84 Identities=31% Similarity=0.507 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCC-eeCC--eEeEEE
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNES-ELHG--RQLKVT 140 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~-~~~g--~~i~v~ 140 (196)
...++||||.|+..+||.+|+++|++||.|++|.|.++..+.++|||||.|.+.+-|..|| .||+. ++.| .+|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999 79984 4555 689999
Q ss_pred eccCCCCC
Q 029268 141 VKRTNVPG 148 (196)
Q Consensus 141 ~~~~~~~~ 148 (196)
|+.+.++.
T Consensus 202 FADtqkdk 209 (510)
T KOG0144|consen 202 FADTQKDK 209 (510)
T ss_pred ecccCCCc
Confidence 99876643
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=1.5e-13 Score=108.50 Aligned_cols=77 Identities=38% Similarity=0.734 Sum_probs=74.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
..+|||+|||..+++++|.++|..||.|..+.|..++ +++++|||||+|.+.++|..|+ .+++..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6899999999999999999999999999999999997 8999999999999999999999 799999999999999964
No 44
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.7e-13 Score=91.89 Aligned_cols=77 Identities=25% Similarity=0.407 Sum_probs=69.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
.++.|||.|||+.+|.+++.++|.+||.|..|+|-..+ ..+|.|||+|++..+|.+|+ .|+|..++++.|.|-+-.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 46789999999999999999999999999999996544 34899999999999999999 8999999999999987644
No 45
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.49 E-value=3.8e-14 Score=104.07 Aligned_cols=78 Identities=28% Similarity=0.483 Sum_probs=74.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
...+|||+||+..++++.|.++|-+.|+|.++.|++|+ +...+|||||+|.++++|+-|| -||...|-|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45799999999999999999999999999999999999 8889999999999999999999 699999999999999886
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.48 E-value=3.9e-13 Score=110.43 Aligned_cols=79 Identities=35% Similarity=0.556 Sum_probs=74.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhh-hcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQ-SCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
..+.+||.|||+++.|.+|+++|. +.|.|+.|.|..|.+++++|||.|+|++++.+++|+ .||.+.++|+.|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 456699999999999999999997 679999999999999999999999999999999999 799999999999999875
Q ss_pred C
Q 029268 144 T 144 (196)
Q Consensus 144 ~ 144 (196)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 47
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.47 E-value=1.4e-13 Score=115.78 Aligned_cols=79 Identities=34% Similarity=0.645 Sum_probs=75.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccCC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 145 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~~ 145 (196)
+.|||||||+++++++|..+|+..|.|.+++++.|+ +|+++||+|++|.+.+.|..|+ .||+.++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999999 8999999999999999999999 79999999999999998654
Q ss_pred C
Q 029268 146 V 146 (196)
Q Consensus 146 ~ 146 (196)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.47 E-value=2.8e-13 Score=117.00 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=67.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-h--hCCCeeCCeEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-H--LNESELHGRQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~--l~~~~~~g~~i~v~~~ 142 (196)
++++|||+|||+.+++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|+.|| . +++..|.|+.|.|.++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 3679999999999999999999999999999999864 689999999999999999 4 5789999999999998
Q ss_pred cC
Q 029268 143 RT 144 (196)
Q Consensus 143 ~~ 144 (196)
..
T Consensus 76 ~~ 77 (481)
T TIGR01649 76 TS 77 (481)
T ss_pred CC
Confidence 54
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.47 E-value=3.7e-13 Score=116.24 Aligned_cols=77 Identities=26% Similarity=0.355 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDY-SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
..+++|||+|||+ .+|+++|+++|+.||.|.+|+|+.++ +|||||+|.+.++|..|| .||+..|.|+.|+|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 3567999999998 69999999999999999999998764 799999999999999999 79999999999999998
Q ss_pred cCC
Q 029268 143 RTN 145 (196)
Q Consensus 143 ~~~ 145 (196)
+..
T Consensus 349 ~~~ 351 (481)
T TIGR01649 349 KQQ 351 (481)
T ss_pred ccc
Confidence 653
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=6e-13 Score=102.90 Aligned_cols=82 Identities=24% Similarity=0.484 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
+.....|.|--||.++|+++|+.+|...|+|++|++++|+ +|.+-||+||.|.++++|++|| .|||..|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3445678899999999999999999999999999999999 8999999999999999999999 7999999999999999
Q ss_pred ccCC
Q 029268 142 KRTN 145 (196)
Q Consensus 142 ~~~~ 145 (196)
+++.
T Consensus 118 ARPS 121 (360)
T KOG0145|consen 118 ARPS 121 (360)
T ss_pred ccCC
Confidence 9874
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.1e-13 Score=113.60 Aligned_cols=78 Identities=23% Similarity=0.491 Sum_probs=73.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
..+|.|.||||.|...+|+.+|+.||.|..|.|++...++.+|||||+|....+|..|| .+|++.|.|++|-|.||-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 67899999999999999999999999999999998778888899999999999999999 7999999999999999844
No 52
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.43 E-value=2.3e-13 Score=106.56 Aligned_cols=71 Identities=27% Similarity=0.518 Sum_probs=66.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccCC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 145 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~~ 145 (196)
.+|||||||..+++.+|+.+|++||+|++|+|+ |.|+||..++...+..|| .||+.+|+|..|+|+.++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 479999999999999999999999999999999 669999999999999999 69999999999999988664
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=6.5e-13 Score=108.92 Aligned_cols=83 Identities=23% Similarity=0.486 Sum_probs=73.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCC-eeCC--eE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNES-ELHG--RQ 136 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~-~~~g--~~ 136 (196)
..+.+.-++|||-||..++|.+|+++|++||.|.+|.|++|+ ++.++|||||.|.+.++|.+|+ .|++. +|-| ..
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 344566789999999999999999999999999999999999 8999999999999999999999 78774 5655 67
Q ss_pred eEEEeccC
Q 029268 137 LKVTVKRT 144 (196)
Q Consensus 137 i~v~~~~~ 144 (196)
|.|+++..
T Consensus 109 vqvk~Ad~ 116 (510)
T KOG0144|consen 109 VQVKYADG 116 (510)
T ss_pred eeecccch
Confidence 88888854
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=8.5e-13 Score=106.41 Aligned_cols=77 Identities=30% Similarity=0.538 Sum_probs=73.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
-.++||||.|.+.+.++.|+..|..||+|.+|.+.+|+ |++.+|||||+|+-++.|+-|+ .+|+..++|+.|+|...
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 46799999999999999999999999999999999999 9999999999999999999999 79999999999999743
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.35 E-value=6.3e-12 Score=80.47 Aligned_cols=59 Identities=29% Similarity=0.521 Sum_probs=52.6
Q ss_pred HHHHHHHhh----hcCceeEEE-EeeCC-C--CCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 81 PEEVQQHFQ----SCGTVNRVT-IRTDK-F--GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 81 ~~~l~~~f~----~~G~i~~~~-i~~~~-~--~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
+++|+++|. .||.|.+|. |+.++ + ++++||+||+|.+.++|.+|+ .|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 65555 5 889999999999999999999 79999999999986
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=7.4e-12 Score=76.53 Aligned_cols=55 Identities=36% Similarity=0.657 Sum_probs=49.5
Q ss_pred HHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 84 VQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 84 l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
|.++|++||.|..+.+.... +++|||+|.+.++|..|+ .||+..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 589999999999999999 79999999999999985
No 57
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.33 E-value=5.1e-12 Score=109.76 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=64.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhc------------CceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCC
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSC------------GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNE 129 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~------------G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~ 129 (196)
......++|||+|||+.+|+++|+++|.++ +.|..+.+ .+.+|||||+|.+.++|..||.||+
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhhcCCC
Confidence 345567899999999999999999999975 23444444 3458999999999999999999999
Q ss_pred CeeCCeEeEEEecc
Q 029268 130 SELHGRQLKVTVKR 143 (196)
Q Consensus 130 ~~~~g~~i~v~~~~ 143 (196)
+.|.|+.|+|....
T Consensus 245 ~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 245 IIYSNVFLKIRRPH 258 (509)
T ss_pred eEeeCceeEecCcc
Confidence 99999999997543
No 58
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=8.7e-12 Score=96.53 Aligned_cols=78 Identities=26% Similarity=0.353 Sum_probs=73.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
...|||=||.+++++.-|+++|..||.|.+|+|++|. +.+.+||+||.+.+-++|..|| .|||..++++.|.|.+.-.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 4579999999999999999999999999999999998 6999999999999999999999 7999999999999998754
No 59
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=8.7e-12 Score=103.79 Aligned_cols=73 Identities=30% Similarity=0.535 Sum_probs=69.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 70 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 70 l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
|||.||+++++...|.++|+.||.|++|++.++..| ++|| ||+|.++++|++|| .+||..+.+++|.|.....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 999999999999999999999999999999999888 8999 99999999999999 7999999999999987644
No 60
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=1.4e-11 Score=98.63 Aligned_cols=81 Identities=25% Similarity=0.507 Sum_probs=73.3
Q ss_pred ccCcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-h-hCCCeeCCeE
Q 029268 59 LANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-H-LNESELHGRQ 136 (196)
Q Consensus 59 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~-l~~~~~~g~~ 136 (196)
....++....+|||++|-..+++.+|+++|.+||.|.+|.+... +++|||+|.+.++|+.|. + +|...|+|++
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 34456677889999999999999999999999999999999866 779999999999999999 4 8888999999
Q ss_pred eEEEeccC
Q 029268 137 LKVTVKRT 144 (196)
Q Consensus 137 i~v~~~~~ 144 (196)
|+|.|.++
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999987
No 61
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.30 E-value=3.1e-12 Score=107.70 Aligned_cols=75 Identities=33% Similarity=0.674 Sum_probs=71.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
..||||||++++++++|+..|+.||.|..|.+..|. +|.++||+||+|.+.+.|.+|+ .|||..|.|+.|+|...
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 349999999999999999999999999999999998 9999999999999999999999 89999999999999765
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=3.5e-12 Score=99.05 Aligned_cols=86 Identities=23% Similarity=0.362 Sum_probs=80.7
Q ss_pred CcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeE
Q 029268 61 NREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 138 (196)
Q Consensus 61 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~ 138 (196)
.++..+.+.|||=.||....+.+|..+|-.||.|.+.++..|+ |+.+|+|+||.|.+..++++|| .|||..|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 4566789999999999999999999999999999999999999 9999999999999999999999 8999999999999
Q ss_pred EEeccCCC
Q 029268 139 VTVKRTNV 146 (196)
Q Consensus 139 v~~~~~~~ 146 (196)
|.+.|++-
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 99998753
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=1.1e-11 Score=97.21 Aligned_cols=75 Identities=31% Similarity=0.586 Sum_probs=69.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
+..+.+|+|+||.+.++..+|+..|++||+|.+|+|+ ++|+||.|.-.++|..|| .||+.+|.|++|+|..+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 4567899999999999999999999999999999999 569999999999999999 79999999999999988
Q ss_pred cCC
Q 029268 143 RTN 145 (196)
Q Consensus 143 ~~~ 145 (196)
-++
T Consensus 148 tsr 150 (346)
T KOG0109|consen 148 TSR 150 (346)
T ss_pred ccc
Confidence 543
No 64
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.21 E-value=2e-11 Score=98.77 Aligned_cols=81 Identities=23% Similarity=0.502 Sum_probs=74.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
..++|||++|+|.++++.|++.|.+||.|..|.+++|+ +++++||+||+|.+.+.+.++|....+.|.|+.|.+..+-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67899999999999999999999999999999999999 79999999999999999998888878899999999998865
Q ss_pred CC
Q 029268 145 NV 146 (196)
Q Consensus 145 ~~ 146 (196)
+.
T Consensus 85 r~ 86 (311)
T KOG4205|consen 85 RE 86 (311)
T ss_pred cc
Confidence 43
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.20 E-value=2.8e-11 Score=89.08 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeE-EEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR-VTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~-~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
....+.+|||+||.+.+++..|.+.|+.||.|.. -.|+++. ++.+++|+||.|.+.+.+.+|| .+|+..++.++|.|
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 3345589999999999999999999999998755 4778887 7999999999999999999999 79999999999999
Q ss_pred EeccC
Q 029268 140 TVKRT 144 (196)
Q Consensus 140 ~~~~~ 144 (196)
.++..
T Consensus 172 ~ya~k 176 (203)
T KOG0131|consen 172 SYAFK 176 (203)
T ss_pred EEEEe
Confidence 99864
No 66
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.20 E-value=5.3e-11 Score=103.83 Aligned_cols=77 Identities=18% Similarity=0.451 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
.+-++|||||+|+.++++.+|..+|+.||.|.+|.++.. ++||||.+....+|.+|| +|+++.+.++.|+|.|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 345789999999999999999999999999999998765 899999999999999999 89999999999999998
Q ss_pred cCC
Q 029268 143 RTN 145 (196)
Q Consensus 143 ~~~ 145 (196)
...
T Consensus 493 ~g~ 495 (894)
T KOG0132|consen 493 VGK 495 (894)
T ss_pred ccC
Confidence 653
No 67
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.19 E-value=1.3e-10 Score=94.05 Aligned_cols=80 Identities=24% Similarity=0.480 Sum_probs=74.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
...+|||++||.++++++++++|.+||.|..+.++.|. +.++++|+||+|.+++++++++...-+.|+++.|.|..|-+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 35699999999999999999999999999999999998 79999999999999999999998888999999999999865
Q ss_pred C
Q 029268 145 N 145 (196)
Q Consensus 145 ~ 145 (196)
+
T Consensus 176 k 176 (311)
T KOG4205|consen 176 K 176 (311)
T ss_pred h
Confidence 4
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.18 E-value=9.2e-11 Score=88.00 Aligned_cols=82 Identities=29% Similarity=0.409 Sum_probs=72.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhc-CceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSC-GTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~-G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
.......+||..+|..+.+.+|..+|.++ |.|..+++.+++ ||.++|||||+|.+.+.|..|- .||++.|.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 33456679999999999999999999998 788888887776 9999999999999999999999 79999999999998
Q ss_pred EeccC
Q 029268 140 TVKRT 144 (196)
Q Consensus 140 ~~~~~ 144 (196)
.+--+
T Consensus 125 ~vmpp 129 (214)
T KOG4208|consen 125 HVMPP 129 (214)
T ss_pred EEeCc
Confidence 87643
No 69
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.15 E-value=1.5e-10 Score=98.25 Aligned_cols=81 Identities=21% Similarity=0.409 Sum_probs=74.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
-.+.|||.+|+..+...+|+.+|++||.|+-.+|+++. +...++|+||++.+.++|.+|| .|+.+.|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45789999999999999999999999999999999886 7777999999999999999999 799999999999999886
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
.-+
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 543
No 70
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.4e-10 Score=90.19 Aligned_cols=79 Identities=30% Similarity=0.507 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCC-eeCC--eEeEEEe
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNES-ELHG--RQLKVTV 141 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~-~~~g--~~i~v~~ 141 (196)
+.++||||.|...-+|++++.+|..||.|.+|.+.+...+.+||||||.|.+.-+|++|| .|++. ++-| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 678999999999999999999999999999999999999999999999999999999999 79884 4444 6789998
Q ss_pred ccC
Q 029268 142 KRT 144 (196)
Q Consensus 142 ~~~ 144 (196)
+..
T Consensus 98 ADT 100 (371)
T KOG0146|consen 98 ADT 100 (371)
T ss_pred ccc
Confidence 865
No 71
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.10 E-value=4.1e-10 Score=85.71 Aligned_cols=77 Identities=19% Similarity=0.410 Sum_probs=69.8
Q ss_pred ceEEEcCCCCCCCHHHHHH----HhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 68 RSVFVGNVDYSCTPEEVQQ----HFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~----~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
.+|||.||+..+..++|+. +|++||.|..|... ++.+.+|-|||.|.+.+.|..|+ .|+|..+-|+.|+|.+|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF--KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec--CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 4999999999999999888 99999999888765 46788999999999999999999 89999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
+...
T Consensus 88 ~s~s 91 (221)
T KOG4206|consen 88 KSDS 91 (221)
T ss_pred cCcc
Confidence 7654
No 72
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.09 E-value=1e-09 Score=88.11 Aligned_cols=82 Identities=29% Similarity=0.490 Sum_probs=74.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCcee--------EEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeC
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVN--------RVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH 133 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~ 133 (196)
....++.|||.|||..+|.+++.++|++||.|. .|+|.++..|+.+|=|.|.|...+++.-|| .|++..|.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344567899999999999999999999999874 578888888999999999999999999999 79999999
Q ss_pred CeEeEEEeccC
Q 029268 134 GRQLKVTVKRT 144 (196)
Q Consensus 134 g~~i~v~~~~~ 144 (196)
|+.|+|..|+-
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999998854
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.07 E-value=3.6e-09 Score=82.72 Aligned_cols=82 Identities=27% Similarity=0.475 Sum_probs=75.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.+....+|+|.|||..+++.+|+++|..||.+..+.|..++.|.+.|.|-|.|...++|.+|+ .+++..++|+.|++..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 444567899999999999999999999999999999999999999999999999999999999 7999999999999987
Q ss_pred ccC
Q 029268 142 KRT 144 (196)
Q Consensus 142 ~~~ 144 (196)
..+
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 644
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=9.3e-10 Score=95.40 Aligned_cols=76 Identities=30% Similarity=0.539 Sum_probs=69.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCC----ceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ----PKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~----~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
++|||.||++.+|.++|...|...|.|.++.|...+... +.|||||+|.+.++|+.|+ .|+|+.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 339999999999999999999999999999988765432 4599999999999999999 79999999999999998
Q ss_pred c
Q 029268 143 R 143 (196)
Q Consensus 143 ~ 143 (196)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=2.6e-10 Score=98.80 Aligned_cols=78 Identities=24% Similarity=0.524 Sum_probs=72.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
..+|+|.|||+..+-.+|+.+|..||.|.+|+|+... .+.++|||||+|.++.+|..|+ .|..+.|-|++|.++|+..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 5789999999999999999999999999999999774 5677999999999999999999 7999999999999999965
No 76
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=5.5e-10 Score=85.55 Aligned_cols=72 Identities=25% Similarity=0.569 Sum_probs=66.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccCCC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNV 146 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~~~ 146 (196)
..|||++||+.+.+.+|..||..||.|..+.+. .||+||+|.+..+|..|+ .||+..|++..+.|++++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 469999999999999999999999999999886 689999999999999999 899999999889999987643
No 77
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=8e-10 Score=89.45 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
.-.+|||..++++.++++|+..|+.||+|..|.+-+++ .+..+||+||+|.+..+...|| .+|-..|+|+.|+|-.+-
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 34689999999999999999999999999999999998 4788999999999999999999 799999999999998764
Q ss_pred C
Q 029268 144 T 144 (196)
Q Consensus 144 ~ 144 (196)
.
T Consensus 289 T 289 (544)
T KOG0124|consen 289 T 289 (544)
T ss_pred C
Confidence 4
No 78
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.02 E-value=3.4e-09 Score=92.01 Aligned_cols=83 Identities=17% Similarity=0.305 Sum_probs=75.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CCceeEEEEEecCHHHHHHHH-hhCCCeeCCeE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF----GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ 136 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~ 136 (196)
..+..++.|||+||++.++++.|...|..||+|..|+|+..++ ...+.|+||.|.+..+|++|+ .|+|+.+.++.
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 3456788999999999999999999999999999999998764 566889999999999999999 79999999999
Q ss_pred eEEEeccC
Q 029268 137 LKVTVKRT 144 (196)
Q Consensus 137 i~v~~~~~ 144 (196)
|++-|.+.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999865
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.00 E-value=9.3e-10 Score=90.85 Aligned_cols=75 Identities=28% Similarity=0.422 Sum_probs=67.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
....++|||.|||.++||..|++-|..||.|..+.|+. .++++| .|.|.++++|+.|| .|++..|+|+.|.|.+.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 34568899999999999999999999999999998853 366776 89999999999999 79999999999999863
No 80
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.5e-09 Score=90.43 Aligned_cols=73 Identities=27% Similarity=0.485 Sum_probs=68.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccCC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 145 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~~ 145 (196)
..|||| +.+|+..|.++|+.+|+|.+++|.+|. + +.|||||.|.++.+|++|| .+|...|.|++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 889999999999999999999999998 5 9999999999999999999 89999999999999998643
No 81
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.88 E-value=5.7e-08 Score=81.44 Aligned_cols=78 Identities=24% Similarity=0.423 Sum_probs=68.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeE-EEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR-VTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
.....|-+.+||++||+++|.+||+..-.|.. |.++.+..+++.|-|||+|.+.+.|+.||.-|...|+-+-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 45678999999999999999999998766555 5566677888999999999999999999988888899999999876
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.86 E-value=5.5e-08 Score=74.13 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeC-CC-CCceeEEEEEecCHHHHHHHH-hhCCCeeC---CeEeE
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KF-GQPKGYAYVEFLQSEAVQEAL-HLNESELH---GRQLK 138 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~-~~~~g~afv~f~~~~~a~~al-~l~~~~~~---g~~i~ 138 (196)
..-++|||.+||.++..-+|..+|..|--.+.+.|... +. .-.+-+|||+|.+...|.+|+ .|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999877666666433 22 234689999999999999999 89999996 78999
Q ss_pred EEeccCCC
Q 029268 139 VTVKRTNV 146 (196)
Q Consensus 139 v~~~~~~~ 146 (196)
|++++++.
T Consensus 112 iElAKSNt 119 (284)
T KOG1457|consen 112 IELAKSNT 119 (284)
T ss_pred eeehhcCc
Confidence 99998764
No 83
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=1.1e-09 Score=82.89 Aligned_cols=76 Identities=26% Similarity=0.323 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
..++|||+|+...++++.|.++|-+.|+|..|.|+.++.++.+ ||||.|.++-++.-|+ .+||..+.+..|.|.+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4578999999999999999999999999999999988888878 9999999999999999 69999999988888764
No 84
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.77 E-value=7.2e-09 Score=80.19 Aligned_cols=80 Identities=20% Similarity=0.407 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
-+.+..+||+|.|...++++.|...|.+|-.....++++++ +++++||+||.|.+..++..|+ ++||..++.+.|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 44567899999999999999999999999988888999987 9999999999999999999999 899999999998886
Q ss_pred ec
Q 029268 141 VK 142 (196)
Q Consensus 141 ~~ 142 (196)
.+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 54
No 85
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.71 E-value=9.9e-08 Score=77.26 Aligned_cols=83 Identities=27% Similarity=0.491 Sum_probs=73.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCcee--------EEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeC
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVN--------RVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELH 133 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~ 133 (196)
.....+|||.+||..+++++|.++|.++|.|. .|.|-+++ |+.+|+-|.|.|.+...|++|| -+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567899999999999999999999999884 46677777 8999999999999999999999 69999999
Q ss_pred CeEeEEEeccCCC
Q 029268 134 GRQLKVTVKRTNV 146 (196)
Q Consensus 134 g~~i~v~~~~~~~ 146 (196)
+..|+|.++..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999886543
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.69 E-value=7.7e-08 Score=80.67 Aligned_cols=76 Identities=29% Similarity=0.521 Sum_probs=65.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~ 143 (196)
....|-+.+|||++|+++|.+||+.++ |.++.+++ .+|+..|-|||+|.+.+++++||+.+...+..+-|.|..+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 345677889999999999999999985 67755542 26999999999999999999999999999999999998773
No 87
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=5e-08 Score=82.86 Aligned_cols=72 Identities=22% Similarity=0.462 Sum_probs=64.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 138 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~ 138 (196)
.+.+.++|+|-|||..+++++|..+|+.||+|..|+.-. ..++.+||+|-+..+|++|+ .|++..|.|+.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456788999999999999999999999999999876543 34889999999999999999 8999999999888
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.59 E-value=6.4e-07 Score=60.53 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhc--CceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeC----CeEeEE
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSC--GTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELH----GRQLKV 139 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~--G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~----g~~i~v 139 (196)
++|.|.|||...|.++|.+++... |....+-++.|. ++.+.|||||-|.+++.|..-. .++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888753 566677778786 7889999999999999999888 79998775 467788
Q ss_pred EeccC
Q 029268 140 TVKRT 144 (196)
Q Consensus 140 ~~~~~ 144 (196)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88753
No 89
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.52 E-value=4.9e-08 Score=82.78 Aligned_cols=85 Identities=31% Similarity=0.473 Sum_probs=77.5
Q ss_pred CccCcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeE
Q 029268 58 SLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 136 (196)
Q Consensus 58 ~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~ 136 (196)
.....++...++||+--|+..++.-+|.+||+.+|.|..|.|+.|+ ++.++|.|||+|.+.+++..||.|.|..+.|.+
T Consensus 170 ~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~p 249 (549)
T KOG0147|consen 170 RILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVP 249 (549)
T ss_pred ccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCce
Confidence 3344456677899999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred eEEEec
Q 029268 137 LKVTVK 142 (196)
Q Consensus 137 i~v~~~ 142 (196)
|.|...
T Consensus 250 v~vq~s 255 (549)
T KOG0147|consen 250 VIVQLS 255 (549)
T ss_pred eEeccc
Confidence 999876
No 90
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.48 E-value=7.9e-07 Score=71.95 Aligned_cols=76 Identities=25% Similarity=0.414 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcC--ceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCG--TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G--~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
....+|||||-|++|+++|.+.+...| .|.++++..++ +|.++|||+|...+..++++.+ .|...+|.|+.-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 345699999999999999999998877 57778888888 7999999999999999999999 6888999998666643
No 91
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.46 E-value=1.9e-07 Score=75.31 Aligned_cols=81 Identities=32% Similarity=0.611 Sum_probs=71.5
Q ss_pred CCceEE-EcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVF-VGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~-v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~ 143 (196)
...++| |++|+..+++++|+.+|..+|.|..++++.+. ++..+|||+|.|.+...+..++..+...+.++.+.|....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 345566 99999999999999999999999999999887 8999999999999999888888437788899999999887
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
++.
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 654
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.43 E-value=1.8e-07 Score=79.82 Aligned_cols=79 Identities=24% Similarity=0.454 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
...+|||++||..+++.++++++..||.+....++.+. ++.++||||.+|.+......|+ .|||..+++++|.|..+-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 45789999999999999999999999999999999988 7999999999999999999999 799999999999999874
Q ss_pred C
Q 029268 144 T 144 (196)
Q Consensus 144 ~ 144 (196)
.
T Consensus 368 ~ 368 (500)
T KOG0120|consen 368 V 368 (500)
T ss_pred c
Confidence 3
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.33 E-value=2.9e-06 Score=69.99 Aligned_cols=75 Identities=29% Similarity=0.469 Sum_probs=67.9
Q ss_pred CceEEEcCCCCC-CCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYS-CTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
+..|.|.||... +|.+-|..+|+.||.|.+|+|..++ +--|.|+|.+...|+-|+ .|+|+.|.|++|+|.+++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 578889998765 9999999999999999999999765 467999999999999999 7999999999999999976
Q ss_pred C
Q 029268 145 N 145 (196)
Q Consensus 145 ~ 145 (196)
.
T Consensus 373 ~ 373 (492)
T KOG1190|consen 373 T 373 (492)
T ss_pred c
Confidence 4
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.30 E-value=5.9e-06 Score=66.72 Aligned_cols=77 Identities=21% Similarity=0.370 Sum_probs=60.8
Q ss_pred CCceEEEcCCCCCCCHHHH------HHHhhhcCceeEEEEeeCC-C-CCceeE--EEEEecCHHHHHHHH-hhCCCeeCC
Q 029268 66 DSRSVFVGNVDYSCTPEEV------QQHFQSCGTVNRVTIRTDK-F-GQPKGY--AYVEFLQSEAVQEAL-HLNESELHG 134 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l------~~~f~~~G~i~~~~i~~~~-~-~~~~g~--afv~f~~~~~a~~al-~l~~~~~~g 134 (196)
....|||-+||+.+..+++ .++|.+||.|..|.|.+.. + ....+. .||+|.+.++|..|| +++|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4457999999998766652 6899999999999886543 2 111222 399999999999999 899999999
Q ss_pred eEeEEEec
Q 029268 135 RQLKVTVK 142 (196)
Q Consensus 135 ~~i~v~~~ 142 (196)
+.|+..+-
T Consensus 193 r~lkatYG 200 (480)
T COG5175 193 RVLKATYG 200 (480)
T ss_pred ceEeeecC
Confidence 99998764
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.25 E-value=5.2e-06 Score=53.98 Aligned_cols=67 Identities=22% Similarity=0.430 Sum_probs=46.4
Q ss_pred ceEEEcCCCCCCCHHHH----HHHhhhcC-ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 68 RSVFVGNVDYSCTPEEV----QQHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l----~~~f~~~G-~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
..|||.|||.+.+...| ++++..|| .|..|. .+.|+|.|.+.+.|.+|+ .|+|..+-|.+|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 46999999999887655 55556776 566652 578999999999999999 7999999999999998
Q ss_pred cc
Q 029268 142 KR 143 (196)
Q Consensus 142 ~~ 143 (196)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 73
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=1.1e-06 Score=67.48 Aligned_cols=71 Identities=28% Similarity=0.532 Sum_probs=62.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
....+.++|.+|+..+++.+|.+.|..+|.+....+. .+++||+|.+.+++..|| .|++..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 3456789999999999999999999999998555442 679999999999999999 7999999999999943
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.16 E-value=7.8e-06 Score=56.30 Aligned_cols=69 Identities=23% Similarity=0.397 Sum_probs=43.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hh--C---CCeeCCeEeEEEe
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL--N---ESELHGRQLKVTV 141 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l--~---~~~~~g~~i~v~~ 141 (196)
..|+|.+++..++.++|+++|++||.|..|.+... ...|||-|.+.+.|+.|+ .+ . +..|.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 46889999999999999999999999999998764 457999999999999999 43 3 4566676666553
No 98
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.12 E-value=5.1e-05 Score=62.39 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=67.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCc-ee--EEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGT-VN--RVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~-i~--~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
...|-+.+||+..+.++|-+||..|-. |. -|.++.+..|++.|-|||+|.+.+.|.+|. ..+++....+.|.|..+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 556889999999999999999998863 33 378888889999999999999999999999 78887778999999887
Q ss_pred c
Q 029268 143 R 143 (196)
Q Consensus 143 ~ 143 (196)
.
T Consensus 360 S 360 (508)
T KOG1365|consen 360 S 360 (508)
T ss_pred c
Confidence 4
No 99
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.12 E-value=5.6e-07 Score=69.91 Aligned_cols=71 Identities=20% Similarity=0.399 Sum_probs=59.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-C--------CCceeE----EEEEecCHHHHHHHH-hhCCCe
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-F--------GQPKGY----AYVEFLQSEAVQEAL-HLNESE 131 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~--------~~~~g~----afv~f~~~~~a~~al-~l~~~~ 131 (196)
....||+++||+.+....|+++|+.||.|-.|.|-... + +.+... +.|+|.+...|+.+. .||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56789999999999999999999999999999886543 3 233222 679999999999888 799999
Q ss_pred eCCeE
Q 029268 132 LHGRQ 136 (196)
Q Consensus 132 ~~g~~ 136 (196)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 100
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.03 E-value=6.1e-06 Score=63.13 Aligned_cols=62 Identities=24% Similarity=0.451 Sum_probs=52.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCee
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL 132 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~ 132 (196)
.+|||.||..+++|++|+.+|+.|--...++|.. + ..-.+||++|.+.+.|..|+ .|.|..|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~--~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-R--GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-C--CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 5799999999999999999999998776666642 2 23568999999999999999 7888765
No 101
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.02 E-value=8e-05 Score=55.56 Aligned_cols=62 Identities=23% Similarity=0.419 Sum_probs=55.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH 133 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~ 133 (196)
...+|.|.+||.+.+|++|+++..+.|.|+...+.+| |++.|+|...++++-|| .|+...+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3467999999999999999999999999999988775 58999999999999999 78877664
No 102
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.97 E-value=4.5e-05 Score=58.47 Aligned_cols=76 Identities=17% Similarity=0.330 Sum_probs=65.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeC-CeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~-g~~i~v~~ 141 (196)
..+...+|+.|||..++.+.|..+|.+|.-...|+++... .+.|||+|.+...+..|. .+.+..|- ...|.|.+
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 4567789999999999999999999999999999988654 789999999998889998 78888775 77788877
Q ss_pred cc
Q 029268 142 KR 143 (196)
Q Consensus 142 ~~ 143 (196)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 64
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.92 E-value=4.1e-05 Score=67.16 Aligned_cols=75 Identities=23% Similarity=0.406 Sum_probs=66.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCce-eEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTV-NRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.+.|-+.|+|+.++-++|.+||..|-.+ .+|.|..+..|+..|-|.|.|++.++|.+|. .|++..|..++|.+..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3478899999999999999999999766 4566666668999999999999999999999 7999999999988864
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.80 E-value=0.00013 Score=59.84 Aligned_cols=76 Identities=30% Similarity=0.375 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYS-CTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
.+.+.+.|-+|... ++-+.|..+|..||.|+.|++++.+ .|.|+|++.+..+.++|+ .||+..+-|.+|.|..+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 45678899999876 6678899999999999999999876 678999999999999999 79999999999999998
Q ss_pred cC
Q 029268 143 RT 144 (196)
Q Consensus 143 ~~ 144 (196)
+.
T Consensus 361 kQ 362 (494)
T KOG1456|consen 361 KQ 362 (494)
T ss_pred cc
Confidence 64
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.76 E-value=0.001 Score=54.79 Aligned_cols=76 Identities=25% Similarity=0.289 Sum_probs=60.8
Q ss_pred CceEEEc--CCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeC-C-eEeEEEe
Q 029268 67 SRSVFVG--NVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-G-RQLKVTV 141 (196)
Q Consensus 67 ~~~l~v~--~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~-g-~~i~v~~ 141 (196)
.+.|.+. |--+.+|.+-|..+....|+|.+|.|.+. +---|.|+|.+.+.|++|. .|||..|- | +.|+|++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 3444444 44456899999999999999999998754 2446899999999999999 79998873 3 7999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
|++.+
T Consensus 196 AkP~r 200 (494)
T KOG1456|consen 196 AKPTR 200 (494)
T ss_pred cCcce
Confidence 98743
No 106
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.76 E-value=9e-05 Score=44.48 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=42.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL 125 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al 125 (196)
+.|-|.+.+.+.. +.|..+|..||.|..+.+.. ...+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 4577888888755 45666999999999988862 2668999999999999986
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.0002 Score=60.98 Aligned_cols=81 Identities=28% Similarity=0.407 Sum_probs=66.2
Q ss_pred CcCCCCCceEEEcCCCCCCCHHHHHHHhh-hcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHh-----hCCCeeC
Q 029268 61 NREEVDSRSVFVGNVDYSCTPEEVQQHFQ-SCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALH-----LNESELH 133 (196)
Q Consensus 61 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~-~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~-----l~~~~~~ 133 (196)
.+.-...+|||||+||.-++.++|..+|. -||.|+.+-|-+|+ -..++|-+=|+|.+..+.-+||. |+...|
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~- 442 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDI- 442 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEecccc-
Confidence 33444678999999999999999999999 79999999999996 68899999999999999999993 233333
Q ss_pred CeEeEEEec
Q 029268 134 GRQLKVTVK 142 (196)
Q Consensus 134 g~~i~v~~~ 142 (196)
.++|.|++-
T Consensus 443 ~KRVEIkPY 451 (520)
T KOG0129|consen 443 DKRVEIKPY 451 (520)
T ss_pred ceeeeecce
Confidence 346777654
No 108
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.63 E-value=0.00033 Score=47.67 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=51.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEE-EeeC-------CCCCceeEEEEEecCHHHHHHHHhhCCCeeCCe-E
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVT-IRTD-------KFGQPKGYAYVEFLQSEAVQEALHLNESELHGR-Q 136 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~-i~~~-------~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~-~ 136 (196)
...-|.|=+.|.. ....|-+.|++||.|.+.. +..+ +.........|+|.++.+|.+||..||..|+|. -
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3455778889987 4577889999999997764 1111 111235688999999999999999999999885 4
Q ss_pred eEEEec
Q 029268 137 LKVTVK 142 (196)
Q Consensus 137 i~v~~~ 142 (196)
|-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 446665
No 109
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.62 E-value=0.00013 Score=60.73 Aligned_cols=69 Identities=26% Similarity=0.375 Sum_probs=57.0
Q ss_pred cCcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeC---C-C--C-C-------ceeEEEEEecCHHHHHHHH
Q 029268 60 ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD---K-F--G-Q-------PKGYAYVEFLQSEAVQEAL 125 (196)
Q Consensus 60 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~---~-~--~-~-------~~g~afv~f~~~~~a~~al 125 (196)
...++..+++|.+-|||.+-.-+.|.++|+.+|.|..|+|+.. . + + . .+-+|||+|...+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3445678999999999999888999999999999999999875 2 1 1 1 2567999999999999999
Q ss_pred hhC
Q 029268 126 HLN 128 (196)
Q Consensus 126 ~l~ 128 (196)
++.
T Consensus 304 e~~ 306 (484)
T KOG1855|consen 304 ELL 306 (484)
T ss_pred Hhh
Confidence 543
No 110
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.60 E-value=0.00021 Score=59.23 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=62.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCC-eEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG-RQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g-~~i~v~~~~ 143 (196)
++.+|++.|+|.++++++|+..|..-|...+.... .++.+-+|++.+.+.++|-.|+ .++++.++. ..|+|.+++
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkf---f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF---FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeee---cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 45689999999999999999999998865443221 2344679999999999999999 899999976 489999987
Q ss_pred C
Q 029268 144 T 144 (196)
Q Consensus 144 ~ 144 (196)
.
T Consensus 490 s 490 (492)
T KOG1190|consen 490 S 490 (492)
T ss_pred c
Confidence 5
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.55 E-value=0.00046 Score=49.85 Aligned_cols=55 Identities=29% Similarity=0.445 Sum_probs=45.4
Q ss_pred HHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 83 EVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 83 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
+|-+.|..||.+.=++++. +.-+|+|.+-++|.+|+.++|..++|+.|.|.+..+
T Consensus 52 ~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 5677888999988888874 357999999999999999999999999999998755
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00029 Score=59.95 Aligned_cols=62 Identities=31% Similarity=0.512 Sum_probs=48.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC----CCCcee---EEEEEecCHHHHHHHH
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK----FGQPKG---YAYVEFLQSEAVQEAL 125 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~~~~g---~afv~f~~~~~a~~al 125 (196)
...-+++||||+||+.++|+.|...|..||.+. |..+... --.++| |+|+.|.++.++...|
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll 323 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLL 323 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHH
Confidence 334578999999999999999999999999853 3333211 123566 9999999999988877
No 113
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.0004 Score=59.84 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=62.2
Q ss_pred CCceEEEcCCCCCCCH------HHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeC-CeEe
Q 029268 66 DSRSVFVGNVDYSCTP------EEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQL 137 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~------~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~-g~~i 137 (196)
-...|+|-|+|.--.. .-|..+|+++|+|..+.++.+..|..+||.|++|.+..+|+.|+ .|||+.|+ .+..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 4567899999874221 24678899999999999998887779999999999999999999 79999886 5666
Q ss_pred EEEe
Q 029268 138 KVTV 141 (196)
Q Consensus 138 ~v~~ 141 (196)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6653
No 114
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.41 E-value=0.00014 Score=59.96 Aligned_cols=74 Identities=24% Similarity=0.289 Sum_probs=60.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhc----CceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEe
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSC----GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 141 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~ 141 (196)
-.|-+.+||+++++.++.+||..- |..+.|-+++.++|+..|-|||.|..++.|+.||.-|...|+-+.|.+..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346678999999999999999632 34566777777789999999999999999999997777777777776654
No 115
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.36 E-value=0.00066 Score=58.45 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=50.4
Q ss_pred HHHHhhhcCceeEEEEeeC-CC---CCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 84 VQQHFQSCGTVNRVTIRTD-KF---GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 84 l~~~f~~~G~i~~~~i~~~-~~---~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
++.-+++||.|..|.|+++ .. .-..|-.||+|.+.+++++|+ .|+|..|+++.|...+..
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 4555578999999999887 32 345778999999999999999 899999999999888764
No 116
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.33 E-value=0.00093 Score=54.40 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=61.2
Q ss_pred CCCCceEEEcCCCC----CCC-------HHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCe
Q 029268 64 EVDSRSVFVGNVDY----SCT-------PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESE 131 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~----~~t-------~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~ 131 (196)
....++|.|.||=. ..+ .++|++-..+||.|.+|.|.- .++.|.+-|.|.+.+.|..|| .|+|..
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD---RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec---cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 34567888888732 223 245566678999999998752 356899999999999999999 799999
Q ss_pred eCCeEeEEEeccC
Q 029268 132 LHGRQLKVTVKRT 144 (196)
Q Consensus 132 ~~g~~i~v~~~~~ 144 (196)
|+|++|.......
T Consensus 339 fdgRql~A~i~DG 351 (382)
T KOG1548|consen 339 FDGRQLTASIWDG 351 (382)
T ss_pred ecceEEEEEEeCC
Confidence 9999999887643
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.26 E-value=0.00036 Score=62.94 Aligned_cols=77 Identities=19% Similarity=0.386 Sum_probs=68.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCC--eEeEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG--RQLKV 139 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g--~~i~v 139 (196)
.....+.+||++|..++....|...|..||.|..|.+-.. .-||+|.|.+...+++|+ .+.+..|++ +.|.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 4557789999999999999999999999999999888533 679999999999999999 799999986 78999
Q ss_pred EeccC
Q 029268 140 TVKRT 144 (196)
Q Consensus 140 ~~~~~ 144 (196)
.++..
T Consensus 526 dla~~ 530 (975)
T KOG0112|consen 526 DLASP 530 (975)
T ss_pred ccccC
Confidence 98865
No 118
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.26 E-value=0.00049 Score=56.86 Aligned_cols=76 Identities=25% Similarity=0.336 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC----CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEecc
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK----FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~ 143 (196)
..|.|.||.+++|.++++.+|.-.|.|..+.|.... -....-.|||-|.+...+..|-.|.++.|-++.|.|.+.-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 379999999999999999999999999999887632 1445678999999999999998888888888888887653
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.14 E-value=0.0002 Score=64.26 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=71.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
...|||.|+|+..|.+.|+.++..+|.+.++++++.+.|+++|.|||.|.+..++..++ ..+...+....+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 45799999999999999999999999999999998889999999999999999999999 7888888877788877655
No 120
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.14 E-value=0.00021 Score=55.80 Aligned_cols=60 Identities=22% Similarity=0.391 Sum_probs=49.4
Q ss_pred HHHHHhh-hcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 83 EVQQHFQ-SCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 83 ~l~~~f~-~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
+|...|+ +||.|+++.|..+..-...|-++|.|...++|++|+ .||+-.++|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 899999987765545566888999999999999999 79999999999998865
No 121
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.06 E-value=0.00046 Score=59.76 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=61.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhh-hcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCee---CCeEeE
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQ-SCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL---HGRQLK 138 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~---~g~~i~ 138 (196)
...+..|||.||-.-.|.-+|+.++. .+|.|...+|- +.+..|||.|.+.++|.+.+ .|||..+ +.+.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHH-----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 34578899999999999999999999 56667666432 33678999999999999999 8999876 568898
Q ss_pred EEecc
Q 029268 139 VTVKR 143 (196)
Q Consensus 139 v~~~~ 143 (196)
|.+..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 88864
No 122
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.96 E-value=0.0033 Score=50.25 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=49.6
Q ss_pred HHHHHHhhhcCceeEEEEeeCCC-C-CceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 82 EEVQQHFQSCGTVNRVTIRTDKF-G-QPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 82 ~~l~~~f~~~G~i~~~~i~~~~~-~-~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
+++++...+||.|.+|.|...++ - .-.---||+|...++|.+|+ .|||..|+|+.+...+.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 45677788999999998887652 1 22334799999999999999 89999999999887764
No 123
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.92 E-value=0.0083 Score=37.02 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=42.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhc---CceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSC---GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL 125 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al 125 (196)
...+|+|.++.. ++.++|+.+|..| .....|..+.|. .|-|.|.+.+.|.+||
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARAL 59 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHH
Confidence 345799999865 7789999999998 134578877764 5789999999999998
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.77 E-value=0.0009 Score=59.07 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=64.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeE-EEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR-VTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
....|||..||..+++.++.++|...-.|++ |.|...++++.++.|||.|..++++..|+ .-+.+.++.+.|+|..
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 3568999999999999999999998777776 77777778999999999999988888887 4666777788899874
No 125
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.54 E-value=0.00054 Score=61.91 Aligned_cols=81 Identities=22% Similarity=0.407 Sum_probs=66.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
++...+++||+|||+..+++.+|+..|..+|.|..|.|-+..-+....|+||.|.+...+-.|+ .+.+..|..-.+.+.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 3455688999999999999999999999999999999977654555679999999999998888 788877754444444
Q ss_pred ec
Q 029268 141 VK 142 (196)
Q Consensus 141 ~~ 142 (196)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 43
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.48 E-value=0.0036 Score=49.09 Aligned_cols=76 Identities=21% Similarity=0.349 Sum_probs=62.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hh--CC--CeeCCeEeEEEec
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL--NE--SELHGRQLKVTVK 142 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l--~~--~~~~g~~i~v~~~ 142 (196)
..|||.||+.-++.+.|.+.|+.||+|....+..|..++..+-++|.|...-.+.+|+ .+ .+ .+..++.+-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6799999999999999999999999999888888878888899999999999899888 44 22 3445666666655
Q ss_pred c
Q 029268 143 R 143 (196)
Q Consensus 143 ~ 143 (196)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.39 E-value=0.0015 Score=53.11 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=59.3
Q ss_pred CCceEEEcCCCCCCCHHHH---HHHhhhcCceeEEEEeeCCC----CCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEe
Q 029268 66 DSRSVFVGNVDYSCTPEEV---QQHFQSCGTVNRVTIRTDKF----GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQL 137 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l---~~~f~~~G~i~~~~i~~~~~----~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i 137 (196)
....+||-+|+.....+.+ .+.|.+||.|..|.+..+.+ .....-++|+|...++|..|| ..+|..+.|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3456888899987655443 57899999999998887652 122334899999999999999 799999999887
Q ss_pred EEEec
Q 029268 138 KVTVK 142 (196)
Q Consensus 138 ~v~~~ 142 (196)
++.+.
T Consensus 156 ka~~g 160 (327)
T KOG2068|consen 156 KASLG 160 (327)
T ss_pred HHhhC
Confidence 76554
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.36 E-value=0.00021 Score=64.01 Aligned_cols=67 Identities=31% Similarity=0.501 Sum_probs=56.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHG 134 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g 134 (196)
.++||.||+..+.+.+|...|..+|.+..+.|.-.. .++.+|.||++|...+++.+||.++...+-|
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 579999999999999999999999988777766333 6888999999999999999999655444444
No 129
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.99 E-value=0.046 Score=39.38 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=54.5
Q ss_pred CCCCCceEEEcCCCCCCCH-H---HHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEe
Q 029268 63 EEVDSRSVFVGNVDYSCTP-E---EVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQL 137 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~-~---~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i 137 (196)
.+.+..+|.|.=|..++.. + .|...++.||+|.+|.+.- +..|.|+|.+..+|-.|+ ++.. ..-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 3556678888877666543 3 3556677899999998753 567999999999999999 6765 4456677
Q ss_pred EEEecc
Q 029268 138 KVTVKR 143 (196)
Q Consensus 138 ~v~~~~ 143 (196)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 777653
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.85 E-value=0.01 Score=49.82 Aligned_cols=70 Identities=21% Similarity=0.427 Sum_probs=54.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCC-CeeCCeEeEEEec
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE-SELHGRQLKVTVK 142 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~-~~~~g~~i~v~~~ 142 (196)
.++|++||.+.++..+|..+|...-.-.+-.++.. .||+||.+.+..-|.+|+ .+++ ..+.|+.+.|..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 36899999999999999999975421111122221 689999999999999999 6777 4678999998865
No 131
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.70 E-value=0.23 Score=44.84 Aligned_cols=69 Identities=9% Similarity=0.179 Sum_probs=49.3
Q ss_pred ceEEEc-CCCCCCCHHHHHHHhhhcCce-----eEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 68 RSVFVG-NVDYSCTPEEVQQHFQSCGTV-----NRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 68 ~~l~v~-~Lp~~~t~~~l~~~f~~~G~i-----~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.++||. +--..++..+|-.++..-+.| -.|+|. ..|.||+.... .+...+ .|++..+.|+.|.|+
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-------~~~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-------ASHSTIELPKG-MPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-------CCceEEEcChh-hHHHHHHHhccccccCCceEEE
Confidence 345553 233458888888888765544 456665 45889998654 466777 799999999999999
Q ss_pred eccC
Q 029268 141 VKRT 144 (196)
Q Consensus 141 ~~~~ 144 (196)
.+..
T Consensus 559 ~~~~ 562 (629)
T PRK11634 559 LLGD 562 (629)
T ss_pred ECCC
Confidence 8753
No 132
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.49 E-value=0.021 Score=43.02 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=46.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhh-cCce---eEEEEeeCC--C-CCceeEEEEEecCHHHHHHHH-hhCCCeeCC---
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQS-CGTV---NRVTIRTDK--F-GQPKGYAYVEFLQSEAVQEAL-HLNESELHG--- 134 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~-~G~i---~~~~i~~~~--~-~~~~g~afv~f~~~~~a~~al-~l~~~~~~g--- 134 (196)
...+|.|++||+++|++++.+.+.. ++.- ..+.-.... . ...-.-|||.|.+.+++...+ .++|+.|-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999998886665 5544 233311222 1 223456999999999988888 799988743
Q ss_pred --eEeEEEec
Q 029268 135 --RQLKVTVK 142 (196)
Q Consensus 135 --~~i~v~~~ 142 (196)
....|++|
T Consensus 86 ~~~~~~VE~A 95 (176)
T PF03467_consen 86 NEYPAVVEFA 95 (176)
T ss_dssp -EEEEEEEE-
T ss_pred CCcceeEEEc
Confidence 23445555
No 133
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.48 E-value=0.29 Score=33.91 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=47.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG 134 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g 134 (196)
..+.+...|..++.++|..+.+.+- .|..++|+++.+ .++-.+.+.|.+.+.|..-. .+||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444555566666765555543 577888888753 25667899999999999988 799998864
No 134
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.38 E-value=0.12 Score=32.37 Aligned_cols=54 Identities=17% Similarity=0.368 Sum_probs=42.1
Q ss_pred CCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 78 SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 78 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
.++-.+|+..|..|+- .+|..++ .|| ||.|.+..+|++|. ..++..+-+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678999999999974 2344454 455 89999999999999 78998888777654
No 135
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.16 E-value=0.013 Score=49.71 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=59.4
Q ss_pred CCceEEEcCCCCCC-CHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSC-TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~-t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
+.+.|-+.-.|+.. +.++|...|.+||.|..|.|-.. ---|.|+|.+..+|-.|-..++..|+++.|+|.|-.+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 34445555566663 56899999999999999988543 3468999999999988888999999999999999765
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.90 E-value=0.1 Score=39.52 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=44.2
Q ss_pred CHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhC--CCeeCCeEeEEEeccCC
Q 029268 80 TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLKVTVKRTN 145 (196)
Q Consensus 80 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~--~~~~~g~~i~v~~~~~~ 145 (196)
....|+.+|..++.+..+.+... -+-..|.|.+.++|..|. .|+ +..+.|..|+|-++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 44789999999999888777643 445789999999999999 788 89999999999988543
No 137
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.76 E-value=0.16 Score=33.21 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=39.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN 128 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~ 128 (196)
....||. .|..+...||.++|+.||.|. |..+.+ ..|||.+...+.|..++ .++
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 3456665 999999999999999999874 444443 37999999999999988 454
No 138
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.69 E-value=0.027 Score=49.70 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=61.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
...+..+|||+|+...+..+-++.++..||.|.++.... |+|+.|..+.....|+ .++-..+++..+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 444677999999999999999999999999998876642 9999999999999999 6787888888877765
Q ss_pred c
Q 029268 142 K 142 (196)
Q Consensus 142 ~ 142 (196)
.
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 3
No 139
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.38 E-value=0.11 Score=45.30 Aligned_cols=72 Identities=17% Similarity=0.283 Sum_probs=55.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhh--cCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hh--CCCeeCCeEeE
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQS--CGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL--NESELHGRQLK 138 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l--~~~~~~g~~i~ 138 (196)
..+.+.|.|.-||..+-.++|+.+|.. |-++.+|.+-.+. --||+|.+..+|+.|. .| .-++|.|+.|.
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 345678899999999999999999974 6788888886542 3699999999999988 33 33567777765
Q ss_pred EEe
Q 029268 139 VTV 141 (196)
Q Consensus 139 v~~ 141 (196)
.+.
T Consensus 246 ARI 248 (684)
T KOG2591|consen 246 ARI 248 (684)
T ss_pred hhh
Confidence 543
No 140
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.37 E-value=0.25 Score=39.93 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=51.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCe-EeEEEe
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGR-QLKVTV 141 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~-~i~v~~ 141 (196)
..=|-|-++|+.- -..|-.+|.+||.|++.... .+-.+-+|.|.+.-+|++||..|+..|+|- -|-|..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~-----~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP-----SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC-----CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 3445555777753 45678899999998775443 235688999999999999999999999885 344554
No 141
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.05 E-value=0.5 Score=30.10 Aligned_cols=66 Identities=18% Similarity=0.417 Sum_probs=38.6
Q ss_pred eEEEc-CCCCCCCHHHHHHHhhhcC-----ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 69 SVFVG-NVDYSCTPEEVQQHFQSCG-----TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 69 ~l~v~-~Lp~~~t~~~l~~~f~~~G-----~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
++||. +--..++..+|..+|...+ .|-.|+|. ..|+||+-... .+..++ .|++..+.|++|.|+.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE--------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 34552 2234578889999998765 45678876 45899998764 577788 7999999999999987
Q ss_pred c
Q 029268 142 K 142 (196)
Q Consensus 142 ~ 142 (196)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 5
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.92 E-value=0.11 Score=47.27 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=60.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCee--CCeEeEEEeccCC
Q 029268 69 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL--HGRQLKVTVKRTN 145 (196)
Q Consensus 69 ~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~--~g~~i~v~~~~~~ 145 (196)
+.++.|.+-+.+...|..+|..||.|.+++..++ -..|.|+|.+.+.|-.|+ .|+|+.+ -|-+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3455556667788889999999999999988776 568999999999999999 8999876 4778999998764
Q ss_pred C
Q 029268 146 V 146 (196)
Q Consensus 146 ~ 146 (196)
.
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 3
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.50 E-value=0.37 Score=41.95 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=50.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhh-hcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCee---C-CeEeEEE
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQ-SCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESEL---H-GRQLKVT 140 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~-~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~---~-g~~i~v~ 140 (196)
+++-|.|+|...|...|..... ..|.-..+-++.|- +..+.|||||-|.+.+++..+. ++||+.+ + .+.+.|.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 3455555555544443333322 24555566777776 6788999999999999999988 7998754 3 3566777
Q ss_pred eccC
Q 029268 141 VKRT 144 (196)
Q Consensus 141 ~~~~ 144 (196)
+|+-
T Consensus 469 YArI 472 (549)
T KOG4660|consen 469 YARI 472 (549)
T ss_pred hhhh
Confidence 7643
No 144
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.37 E-value=0.81 Score=40.24 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=57.7
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhhc----CceeEEEEeeCCCCC--------------------------------
Q 029268 64 EVDSRSVFVGNVDYS-CTPEEVQQHFQSC----GTVNRVTIRTDKFGQ-------------------------------- 106 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~-~t~~~l~~~f~~~----G~i~~~~i~~~~~~~-------------------------------- 106 (196)
.-.+++|-|-||.|. +...+|.-+|..| |.|.+|.|.....|+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 336788999999997 7888999999866 578888876532211
Q ss_pred ----------------ceeEEEEEecCHHHHHHHH-hhCCCeeCCe--EeEEEe
Q 029268 107 ----------------PKGYAYVEFLQSEAVQEAL-HLNESELHGR--QLKVTV 141 (196)
Q Consensus 107 ----------------~~g~afv~f~~~~~a~~al-~l~~~~~~g~--~i~v~~ 141 (196)
-.=||.|+|.+...|.+.- .++|+.|... .|-+++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0126899999999988888 7999999754 444444
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=91.36 E-value=0.23 Score=40.29 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=61.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCC-eeCCeEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNES-ELHGRQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~-~~~g~~i~v~~~ 142 (196)
...++|++++.+.+.+.++..++..+|.+....+.... ...+++++.+.|...+.+..||.+.+. .+.+..+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999999899999999977766665544 677899999999999999999976664 555555555444
No 146
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.03 E-value=3.4 Score=34.94 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=44.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCc-eeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhh
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGT-VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHL 127 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~-i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l 127 (196)
-.+.|=|-++|.....++|-..|+.|+. -..|.++-+ -.||-+|.+...|..||.+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 4567889999999888899999999974 345555544 3799999999999999955
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.71 E-value=2.1 Score=36.70 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=56.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG 134 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g 134 (196)
+..|+|=.+|..++-.||-.|...+- .|.+|+|++|... ++=.++|.|.+..+|...- .+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999998664 5889999986432 2445789999999999988 799998875
No 148
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=86.46 E-value=1.4 Score=33.17 Aligned_cols=75 Identities=13% Similarity=0.237 Sum_probs=52.2
Q ss_pred ceEEEcCCCCCCCH-----HHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCe-EeEEE
Q 029268 68 RSVFVGNVDYSCTP-----EEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGR-QLKVT 140 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~-----~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~-~i~v~ 140 (196)
..+++.+++..+-. .....+|.+|.+.....+.+. .++.-|.|.+.+.|..|. .++...|.|+ .++.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs-----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS-----FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh-----hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 45667777765432 234566666666555555432 556678899999999999 8999999988 88888
Q ss_pred eccCCCC
Q 029268 141 VKRTNVP 147 (196)
Q Consensus 141 ~~~~~~~ 147 (196)
++.+..+
T Consensus 86 faQ~~~~ 92 (193)
T KOG4019|consen 86 FAQPGHP 92 (193)
T ss_pred EccCCCc
Confidence 8876543
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=85.31 E-value=0.089 Score=43.90 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=53.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeE
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 136 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~ 136 (196)
.++|+|++|+..+...++.+.|..+|.|...++-. +...-+|.|+|....+...|+..+|..+.-+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---k~~s~~c~~sf~~qts~~halr~~gre~k~qh 217 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS---KSRSSSCSHSFRKQTSSKHALRSHGRERKRQH 217 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---cCCCcchhhhHhhhhhHHHHHHhcchhhhhhh
Confidence 47899999999999999999999999987665532 33355677999988888888888887776433
No 150
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.26 E-value=2.6 Score=34.00 Aligned_cols=46 Identities=7% Similarity=0.172 Sum_probs=34.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCce-eEEEEeeCCCCCceeEEEEEecCH
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTV-NRVTIRTDKFGQPKGYAYVEFLQS 118 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~g~afv~f~~~ 118 (196)
.-|+++|||.++.-.+|+..+.+.+.+ .++.+. ...+-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCc
Confidence 459999999999999999999987754 333332 2366799999654
No 151
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=81.64 E-value=3.4 Score=25.94 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=43.6
Q ss_pred HHHHHHhhhcC-ceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 82 EEVQQHFQSCG-TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 82 ~~l~~~f~~~G-~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
++|.+.|...| .|..|.-+..+ +......-||++....+...+ ++=..|+++.|.|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i--~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI--YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce--eehHhhCCeEEEEecCCC
Confidence 46788888878 67777777766 677788889988765443333 333567888999988764
No 152
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=81.25 E-value=0.15 Score=43.13 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=61.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
.++.+-|.|+|+...|+.|..++.+||.+..|..+...+ -....-|+|.+.+.+..|| .|++..+....++|.+-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 456789999999999999999999999999887643221 1233457788999999999 89999999999998875
No 153
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=79.01 E-value=0.39 Score=37.20 Aligned_cols=64 Identities=28% Similarity=0.404 Sum_probs=52.1
Q ss_pred CceEEEcC----CCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCC
Q 029268 67 SRSVFVGN----VDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNES 130 (196)
Q Consensus 67 ~~~l~v~~----Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~ 130 (196)
..+++.|+ |...++++.+...|++.|++..+++.++..++++.+.|+.+....+.-.++ ...+.
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 45677888 778899999999999999999999998888899999999887666666666 34443
No 154
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=77.75 E-value=7.1 Score=24.00 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=15.4
Q ss_pred HHHHHHhhhcCceeEEEEe
Q 029268 82 EEVQQHFQSCGTVNRVTIR 100 (196)
Q Consensus 82 ~~l~~~f~~~G~i~~~~i~ 100 (196)
.+|+++|+..|.|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998765553
No 155
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=75.92 E-value=6.2 Score=24.82 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=43.1
Q ss_pred HHHHHHhhhcC-ceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 82 EEVQQHFQSCG-TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 82 ~~l~~~f~~~G-~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
.+|.+.|...| ++..+..+..+ +..+...-||+.....+... -|+=+.|++++|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecCcc
Confidence 46888899888 67888877776 56677788888865433332 2444578899999987643
No 156
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=75.66 E-value=7 Score=27.26 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEec-CHHHHHHHHhhCC
Q 029268 79 CTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQEALHLNE 129 (196)
Q Consensus 79 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~-~~~~a~~al~l~~ 129 (196)
++.+.|.+.|+.|.++. +..+.+.. ...|+++|.|. +-.-...|+.|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHHHHHH
Confidence 35578999999998875 44444443 45899999997 4455666665543
No 157
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=73.45 E-value=7.6 Score=31.53 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=57.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC--------CCCceeEEEEEecCHHHHHHHH-----hhCC
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK--------FGQPKGYAYVEFLQSEAVQEAL-----HLNE 129 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~--------~~~~~g~afv~f~~~~~a~~al-----~l~~ 129 (196)
++-.++.|...|+..+++-..+...|.+||+|++|-++.+. .-+......+.|-+.+.|..-- .|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 44567788899999999999999999999999999998764 2344567788898887765432 1221
Q ss_pred --CeeCCeEeEEEec
Q 029268 130 --SELHGRQLKVTVK 142 (196)
Q Consensus 130 --~~~~g~~i~v~~~ 142 (196)
..+....|.|.+.
T Consensus 91 fK~~L~S~~L~lsFV 105 (309)
T PF10567_consen 91 FKTKLKSESLTLSFV 105 (309)
T ss_pred HHHhcCCcceeEEEE
Confidence 3456666777655
No 158
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=67.35 E-value=0.74 Score=40.29 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=54.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeE
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ 136 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~ 136 (196)
..+.||+.|++++++-.+|..++..+--+..+.+.... ..+...+.+|+|.---....|+ .||++-+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 35679999999999999999999988777777665544 4556677899998666677777 78877665443
No 159
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=61.91 E-value=8 Score=30.42 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=28.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEE
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV 97 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~ 97 (196)
.....+|+-|+|..+|++.|.++.+++|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 355689999999999999999999999865443
No 160
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=59.96 E-value=23 Score=23.30 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=29.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQ 117 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~ 117 (196)
.-||||+++..+.+.-...+....+.-.-+-+..+. + ..||+|-++.+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-n-eqG~~~~t~G~ 73 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-N-EQGFDFRTLGD 73 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-C-CCCEEEEEeCC
Confidence 459999999987765544444444433333333332 2 78999988743
No 161
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=59.62 E-value=16 Score=27.59 Aligned_cols=59 Identities=22% Similarity=0.239 Sum_probs=38.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhh-hcCceeEEEEeeCCCC--CceeEEEEEecCHHHHHHHHhhCC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQ-SCGTVNRVTIRTDKFG--QPKGYAYVEFLQSEAVQEALHLNE 129 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~--~~~g~afv~f~~~~~a~~al~l~~ 129 (196)
..+++|.. +|+++|.++.. .-|.+.+|.+.....+ ..+|-.||+|.+.+.|.+++.-+.
T Consensus 110 ~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 110 KERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred HHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 44667765 45544444332 1278888776554333 678999999999999998884433
No 162
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.06 E-value=24 Score=31.03 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=44.1
Q ss_pred EEcCCCCCCCH---HHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEe
Q 029268 71 FVGNVDYSCTP---EEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQL 137 (196)
Q Consensus 71 ~v~~Lp~~~t~---~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i 137 (196)
+||||+.-... ..+..+=.+||+|-.+++-. .-.|...+.+.|+.|+.-++..+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~--------~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS--------VPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC--------ceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 57888765333 44555556899999888732 2477888999999999888888888875
No 163
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.56 E-value=14 Score=29.83 Aligned_cols=36 Identities=11% Similarity=0.363 Sum_probs=28.4
Q ss_pred CCceEEEcCCCCC------------CCHHHHHHHhhhcCceeEEEEee
Q 029268 66 DSRSVFVGNVDYS------------CTPEEVQQHFQSCGTVNRVTIRT 101 (196)
Q Consensus 66 ~~~~l~v~~Lp~~------------~t~~~l~~~f~~~G~i~~~~i~~ 101 (196)
.+.+||+.+||-. .++.-|+..|..||.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 4567888888752 45778999999999999888764
No 164
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=53.45 E-value=20 Score=23.69 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=23.1
Q ss_pred EEEEecCHHHHHHHHh--hCCCeeCCeEeEEEe
Q 029268 111 AYVEFLQSEAVQEALH--LNESELHGRQLKVTV 141 (196)
Q Consensus 111 afv~f~~~~~a~~al~--l~~~~~~g~~i~v~~ 141 (196)
|.|+|.+..-|+..+. -+...+++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 6899999999999994 444566776666654
No 165
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=49.78 E-value=10 Score=25.07 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHh
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHF 88 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f 88 (196)
.....++|.|.|||....+++|++.+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 44567899999999999999998664
No 166
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=49.65 E-value=43 Score=28.08 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=4.5
Q ss_pred CCCCCCCCCC
Q 029268 174 LYSPYGYGKI 183 (196)
Q Consensus 174 ~~~~~g~g~~ 183 (196)
+|+++|.|++
T Consensus 365 ~~gGrGgGRG 374 (465)
T KOG3973|consen 365 NWGGRGGGRG 374 (465)
T ss_pred CCCCCCCCCC
Confidence 3444444444
No 167
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=46.72 E-value=34 Score=26.10 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=34.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK 103 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~ 103 (196)
.......+++.+++..++...+...|..+|.+....+....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 34456789999999999999999999999999777666544
No 168
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.87 E-value=3.8 Score=35.08 Aligned_cols=75 Identities=4% Similarity=-0.129 Sum_probs=57.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
.+.|+..||-.+++.++.-+|..||.|..+.+...- .+-..-.+||.-.+. .+..|| .+.-..+.+.+++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCc
Confidence 356777889999999999999999999988876544 355567788877653 467777 577777778778877763
No 169
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=42.37 E-value=50 Score=27.68 Aligned_cols=7 Identities=29% Similarity=0.558 Sum_probs=2.8
Q ss_pred EEEcCCC
Q 029268 70 VFVGNVD 76 (196)
Q Consensus 70 l~v~~Lp 76 (196)
+.|+.+|
T Consensus 297 ~~igrvP 303 (465)
T KOG3973|consen 297 LSIGRVP 303 (465)
T ss_pred cccccCC
Confidence 3344443
No 170
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=41.84 E-value=12 Score=31.79 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=47.3
Q ss_pred CceEEEcCCCCCCCHH--------HHHHHhhh--cCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH
Q 029268 67 SRSVFVGNVDYSCTPE--------EVQQHFQS--CGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL 125 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~--------~l~~~f~~--~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al 125 (196)
.+.+|+.+.....+.+ ++..+|.. .+++..|...++. ...++|..|++|.....+++.+
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4567777777655444 88999988 6778888887777 7788999999999999999987
No 171
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=40.84 E-value=58 Score=21.97 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=28.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCH
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQS 118 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~ 118 (196)
.-||||+++..+.+.--..+-+.++.- ++.++. ++....||+|-++.+.
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~-~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAW-ATNTESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEE-cCCCCCCcEEEecCCC
Confidence 459999988877654333333334332 233332 2223459999988753
No 172
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.05 E-value=1.2e+02 Score=19.90 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=36.2
Q ss_pred EEcCCCCCCCHHHHHHHhhh-cC-ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH
Q 029268 71 FVGNVDYSCTPEEVQQHFQS-CG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL 125 (196)
Q Consensus 71 ~v~~Lp~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al 125 (196)
|+--++...+-.+|+..++. || .|..|.....+.+ .-=|||.+.....|....
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHH
Confidence 33346788999999999986 56 5667766554422 234899998777766554
No 173
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=35.94 E-value=1.2e+02 Score=19.46 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=35.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhh-cC-ceeEEEEeeCCCCCceeEEEEEecCHHHHHHH
Q 029268 70 VFVGNVDYSCTPEEVQQHFQS-CG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEA 124 (196)
Q Consensus 70 l~v~~Lp~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~a 124 (196)
-|+-.++...+-.+|+..++. |+ .|..|....-+.+ --=|||.+.....|...
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEI 70 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHH
Confidence 444457888999999999986 55 4666665544322 23489999766655543
No 174
>PF14893 PNMA: PNMA
Probab=35.35 E-value=41 Score=28.03 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=31.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhh-cCceeEEEEeeC--CCCCceeEEEEEecC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQS-CGTVNRVTIRTD--KFGQPKGYAYVEFLQ 117 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~-~G~i~~~~i~~~--~~~~~~g~afv~f~~ 117 (196)
.+.|.|.+||.++++.+|.+.+.. .-++-..+|... +...+.--|+|+|..
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 356889999999999999888864 323333333322 111224467888864
No 175
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=34.91 E-value=1.8e+02 Score=25.04 Aligned_cols=8 Identities=25% Similarity=0.115 Sum_probs=3.5
Q ss_pred eeEEEEEe
Q 029268 108 KGYAYVEF 115 (196)
Q Consensus 108 ~g~afv~f 115 (196)
.|.|++.+
T Consensus 342 ~G~ai~l~ 349 (456)
T PRK10590 342 TGEALSLV 349 (456)
T ss_pred CeeEEEEe
Confidence 44554433
No 176
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=34.68 E-value=1.5e+02 Score=20.10 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=25.1
Q ss_pred CCCHHHHHHHhhh-cCceeEEEEeeC-C----CCCceeEEEEEecCHHHHHH
Q 029268 78 SCTPEEVQQHFQS-CGTVNRVTIRTD-K----FGQPKGYAYVEFLQSEAVQE 123 (196)
Q Consensus 78 ~~t~~~l~~~f~~-~G~i~~~~i~~~-~----~~~~~g~afv~f~~~~~a~~ 123 (196)
+.+..+|++-+.+ |+.=.+..++.. + .+++.|||.| |.+.+.+.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 4667888877764 553222222221 2 2567777766 667665544
No 177
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=33.74 E-value=67 Score=25.81 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=23.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEE
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTI 99 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i 99 (196)
....|+|||+++|..-|..++...-.+....+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 45679999999999999988876544433333
No 178
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=33.03 E-value=14 Score=32.91 Aligned_cols=8 Identities=38% Similarity=0.709 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 029268 19 DDMKIRLK 26 (196)
Q Consensus 19 ~~~~~~~~ 26 (196)
++...++.
T Consensus 377 kdf~~RL~ 384 (556)
T PF05918_consen 377 KDFRERLQ 384 (556)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 179
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=32.29 E-value=52 Score=26.14 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=23.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhh--hcCce
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQ--SCGTV 94 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~--~~G~i 94 (196)
....++|+|||+.++..-|..++. .+|.+
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CCceEEEEEecccchHHHHHHHhhccccccc
Confidence 456789999999999999999987 45443
No 180
>PHA02585 16 small terminase protein; Provisional
Probab=31.22 E-value=1.9e+02 Score=21.21 Aligned_cols=62 Identities=10% Similarity=0.299 Sum_probs=29.2
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCccCcCCCCCceEEEcC
Q 029268 12 ENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN 74 (196)
Q Consensus 12 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 74 (196)
.+.-..++-+..-++.+..-.+.+-.++++............. ...........+.+||||+
T Consensus 76 SesPR~~EVf~~Lm~qm~~~nk~Ll~lhK~MK~it~e~~~~~~-~~~~~~~~nienatvF~Gs 137 (161)
T PHA02585 76 SESPRHVEVFATLMGQMTNTNKEILKIHKEMKDITEEQTGTKK-GEPQGDQMNIENATVFMGS 137 (161)
T ss_pred cCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhccCCC-CCCCCCcceeecceeeccC
Confidence 3444555555555555555555555555554333222211111 1111114445677899983
No 181
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=31.05 E-value=1.9e+02 Score=20.33 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=26.2
Q ss_pred CCCHHHHHHHhhhcCce-----eEEEEeeCC-CCCceeEEEEEecCHHHHH
Q 029268 78 SCTPEEVQQHFQSCGTV-----NRVTIRTDK-FGQPKGYAYVEFLQSEAVQ 122 (196)
Q Consensus 78 ~~t~~~l~~~f~~~G~i-----~~~~i~~~~-~~~~~g~afv~f~~~~~a~ 122 (196)
+++.++|++-+++.=.. .-..+.... .|++.|||.| |.+.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 46778888888753322 112222222 5788999988 66665544
No 182
>PF11053 DNA_Packaging: Terminase DNA packaging enzyme; InterPro: IPR020342 This entry represents the DNA-packaging protein Gp16 found in Enterobacteria phage T4 (Bacteriophage T4). Double-stranded DNA packaging in bacteriophages is driven by a molecular motor. The phage T4 motor is composed of the small terminase protein, Gpl6 (18kDa), the large terminase protein, Gp17 (70kDa), and the dodecameric portal protein Gp20 (61kDa). Gp16 is involved in the recognition of the viral DNA substrate, the very first step in the DNA packaging pathway, and stimulates the ATPase and packaging activities associated with Gp17 []. Gp16 modulates the activity of Gp17 [] and is required to translocate phage T4 DNA into the head []. ; PDB: 3TXS_D 3TXQ_I.
Probab=30.97 E-value=84 Score=23.05 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=17.0
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCccCcCCCCCceEEEc
Q 029268 12 ENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVG 73 (196)
Q Consensus 12 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 73 (196)
.+.-..++-+..-++.+......+-.+|++..........+..........-.....+||||
T Consensus 79 SesPRa~EVf~~Lm~~m~~~nk~Ll~lqK~MKdIt~E~~~~~~~~~~~~~~~ni~natvFvG 140 (153)
T PF11053_consen 79 SESPRAYEVFAQLMKQMTDTNKKLLDLQKKMKDITNEKTKTKDKGSTPSGQSNIQNATVFVG 140 (153)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------S------------------
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCCCCCCccccccceeeec
Confidence 34444555555555555555555555555543332221111111111122223456689998
No 183
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=30.39 E-value=1.1e+02 Score=20.39 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=27.3
Q ss_pred eEEEcCCCCCCCHHHH---HHHhhhcCceeEEEE--ee-CCCCCceeEEEEEe
Q 029268 69 SVFVGNVDYSCTPEEV---QQHFQSCGTVNRVTI--RT-DKFGQPKGYAYVEF 115 (196)
Q Consensus 69 ~l~v~~Lp~~~t~~~l---~~~f~~~G~i~~~~i--~~-~~~~~~~g~afv~f 115 (196)
..|+.+||.++.+.++ +..|..+..-..|.+ .. .....+.|++.+.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 4689999999887665 455555553334433 11 23566677776654
No 184
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=29.84 E-value=2e+02 Score=20.60 Aligned_cols=44 Identities=9% Similarity=0.326 Sum_probs=24.5
Q ss_pred CCCHHHHHHHhhh-cC-c-eeEEEEee--CC--CCCceeEEEEEecCHHHHH
Q 029268 78 SCTPEEVQQHFQS-CG-T-VNRVTIRT--DK--FGQPKGYAYVEFLQSEAVQ 122 (196)
Q Consensus 78 ~~t~~~l~~~f~~-~G-~-i~~~~i~~--~~--~~~~~g~afv~f~~~~~a~ 122 (196)
..+-.+|++-+++ |+ . ...|.|.. .. .+.+.|||.| |.+.+.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 4677888888875 44 1 12222221 12 3567777777 66655443
No 185
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=29.39 E-value=43 Score=18.17 Aligned_cols=16 Identities=6% Similarity=0.233 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHhhhcC
Q 029268 77 YSCTPEEVQQHFQSCG 92 (196)
Q Consensus 77 ~~~t~~~l~~~f~~~G 92 (196)
..+++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998764
No 186
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.25 E-value=68 Score=27.12 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=43.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCc-eeEEEEeeCC-C--CCceeEEEEEecCHHHHHHHH-hhCCCee
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGT-VNRVTIRTDK-F--GQPKGYAYVEFLQSEAVQEAL-HLNESEL 132 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~-i~~~~i~~~~-~--~~~~g~afv~f~~~~~a~~al-~l~~~~~ 132 (196)
...|.|.+||+..++.+|.+-+..+-. +....+.... . ..--+.|||.|...++...-. .++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 356889999999999888777766432 2222333111 1 223667899999988866555 5787665
No 187
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=27.37 E-value=65 Score=26.28 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=22.4
Q ss_pred EEEEecCHHHHHHHHh-hCCCeeCCeEeEEEeccC
Q 029268 111 AYVEFLQSEAVQEALH-LNESELHGRQLKVTVKRT 144 (196)
Q Consensus 111 afv~f~~~~~a~~al~-l~~~~~~g~~i~v~~~~~ 144 (196)
|||+|.+..+|+.|++ +.... ...+.|..|-+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999994 33322 24456666644
No 188
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=26.54 E-value=3.2e+02 Score=24.16 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=34.6
Q ss_pred HHHHHHHhh----hcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hh
Q 029268 81 PEEVQQHFQ----SCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL 127 (196)
Q Consensus 81 ~~~l~~~f~----~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l 127 (196)
.-+|..+|. .+|-|+++.|...+.-......++.|.+.+++..++ .+
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHH
Confidence 346666665 578888888876664445667788999999999888 54
No 189
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=25.07 E-value=23 Score=22.11 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=18.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhh
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQ 89 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~ 89 (196)
-...+++||||.+|..+-.+.=..++.
T Consensus 23 Ls~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 23 LSLTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HHHcCceEEECCCChHHHHcCcchHHH
Confidence 344678999999999766554444443
No 190
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=23.63 E-value=1.9e+02 Score=18.89 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=27.3
Q ss_pred ceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCee-C-CeEeEEEec
Q 029268 93 TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESEL-H-GRQLKVTVK 142 (196)
Q Consensus 93 ~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~-~-g~~i~v~~~ 142 (196)
.|.+|+|..-. .++.++||=|+|.+ ++.+++..+ . ..-+.|...
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd------~f~I~~ikVieg~~GlFVaMP 48 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD------CFVIHDIKVIEGEKGLFVAMP 48 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT------TEEEEEEEEEEETTEEEEE--
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC------EEEEEeEEEEECCCCcEEECC
Confidence 36778887655 58999999999977 345555443 1 233555544
No 191
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=22.67 E-value=1.2e+02 Score=26.00 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=37.4
Q ss_pred CCCHHHHHHHhh----hcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH
Q 029268 78 SCTPEEVQQHFQ----SCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL 125 (196)
Q Consensus 78 ~~t~~~l~~~f~----~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al 125 (196)
+-|--+|+.+|- ..|.|+.+.|...+..++-..||+-..+-+++++++
T Consensus 235 DNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 235 DNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred cCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHHHHH
Confidence 344567788883 567889999988777788889999988888887755
No 192
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=22.16 E-value=1.9e+02 Score=19.12 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=26.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhc--CceeEEEEeeCCCCCceeEEEEEecC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSC--GTVNRVTIRTDKFGQPKGYAYVEFLQ 117 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~g~afv~f~~ 117 (196)
.-||||+++..+.+. |.+...+. +.- ++.+... +....||.|-++..
T Consensus 26 ~GVyVg~~s~rVRe~-lW~~v~~~~~~~G-~avm~~~-~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 26 AGVYVGGVSASVRER-IWDYLAQHCPPKG-SLVITWS-SNTCPGFEFFTLGE 74 (87)
T ss_pred CCcEEcCCCHHHHHH-HHHHHHHhCCCCc-cEEEEEe-CCCCCCcEEEecCC
Confidence 459999998877654 33333332 222 2222222 23346799888765
No 193
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=22.01 E-value=2e+02 Score=18.47 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=22.6
Q ss_pred ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCC
Q 029268 93 TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNES 130 (196)
Q Consensus 93 ~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~ 130 (196)
.|.++..+. ..+||-||+=.+..++..|+ .+.+.
T Consensus 33 ~I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPD----SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-T----TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeC----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 345554432 36999999999999999999 56553
No 194
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=21.96 E-value=2.1e+02 Score=17.67 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=34.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQ 117 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~ 117 (196)
..++|-++.-.--...+...+.....|..+.+... .+-++|.|.+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----cCeEEEEEcC
Confidence 35677776666566789999998888888888765 5568999976
No 195
>PHA01632 hypothetical protein
Probab=21.80 E-value=1.1e+02 Score=18.35 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=16.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhh
Q 029268 70 VFVGNVDYSCTPEEVQQHFQS 90 (196)
Q Consensus 70 l~v~~Lp~~~t~~~l~~~f~~ 90 (196)
|.|-.+|...|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 334588999999999988764
No 196
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=20.43 E-value=2.1e+02 Score=19.17 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=19.2
Q ss_pred ceeEEEEeeCC-CCCceeEEEEEecC
Q 029268 93 TVNRVTIRTDK-FGQPKGYAYVEFLQ 117 (196)
Q Consensus 93 ~i~~~~i~~~~-~~~~~g~afv~f~~ 117 (196)
.|+.|+|..-. .|+.++||=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 36777776543 68899999999976
No 197
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=20.24 E-value=1.3e+02 Score=24.01 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=18.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhh
Q 029268 69 SVFVGNVDYSCTPEEVQQHFQS 90 (196)
Q Consensus 69 ~l~v~~Lp~~~t~~~l~~~f~~ 90 (196)
.+.|+|+|+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5779999999998888888754
No 198
>PRK11901 hypothetical protein; Reviewed
Probab=20.19 E-value=2.8e+02 Score=23.14 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=32.9
Q ss_pred CCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEE--EecCHHHHHHHH-hhCC
Q 029268 78 SCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYV--EFLQSEAVQEAL-HLNE 129 (196)
Q Consensus 78 ~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv--~f~~~~~a~~al-~l~~ 129 (196)
..+++.|..|..+++ +..+.+.... .|+ .-|..| .|.+.++|..|+ .|..
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 455788999888875 4455554432 343 234433 688999999999 6754
Done!