Query 029268
Match_columns 196
No_of_seqs 251 out of 2270
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 16:34:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.9 5.8E-23 2E-27 150.8 13.4 84 64-147 36-121 (156)
2 4fxv_A ELAV-like protein 1; RN 99.9 5.2E-23 1.8E-27 140.1 11.9 79 66-144 18-98 (99)
3 3q2s_C Cleavage and polyadenyl 99.9 1.7E-23 5.9E-28 163.0 9.6 79 66-144 67-149 (229)
4 3pgw_S U1-70K; protein-RNA com 99.9 7.6E-22 2.6E-26 166.8 17.9 82 65-146 100-183 (437)
5 1rk8_A CG8781-PA, CG8781-PA pr 99.9 6.3E-22 2.2E-26 146.7 11.9 85 63-147 68-154 (165)
6 2cqd_A RNA-binding region cont 99.9 7.3E-21 2.5E-25 132.9 15.7 84 61-145 11-96 (116)
7 2fy1_A RNA-binding motif prote 99.9 2.6E-21 9E-26 135.3 13.4 82 65-146 5-87 (116)
8 3s8s_A Histone-lysine N-methyl 99.9 1.7E-21 5.9E-26 135.1 12.3 80 65-144 4-85 (110)
9 3ex7_B RNA-binding protein 8A; 99.9 8.1E-22 2.8E-26 139.6 10.4 84 63-146 18-103 (126)
10 2lxi_A RNA-binding protein 10; 99.9 3E-22 1E-26 134.3 7.6 81 67-147 1-85 (91)
11 1u6f_A Tcubp1, RNA-binding pro 99.9 5.6E-21 1.9E-25 137.5 14.3 85 62-146 37-123 (139)
12 2dgo_A Cytotoxic granule-assoc 99.9 1.7E-20 5.7E-25 130.7 16.2 86 62-147 10-97 (115)
13 2dnz_A Probable RNA-binding pr 99.9 4.6E-21 1.6E-25 129.1 12.6 81 66-146 4-86 (95)
14 2cq0_A Eukaryotic translation 99.9 6.6E-21 2.3E-25 130.3 13.3 85 62-146 10-96 (103)
15 2do4_A Squamous cell carcinoma 99.9 8.3E-21 2.8E-25 129.1 13.5 84 63-146 13-97 (100)
16 2do0_A HnRNP M, heterogeneous 99.9 2E-20 6.8E-25 130.1 15.7 84 63-146 11-95 (114)
17 2dgs_A DAZ-associated protein 99.9 7.1E-21 2.4E-25 129.2 12.9 83 64-146 7-90 (99)
18 3ucg_A Polyadenylate-binding p 99.9 5.3E-21 1.8E-25 127.2 11.9 83 66-148 5-88 (89)
19 1whw_A Hypothetical protein ri 99.9 6.4E-21 2.2E-25 129.4 12.5 82 65-146 6-89 (99)
20 2d9p_A Polyadenylate-binding p 99.9 9.9E-21 3.4E-25 129.4 13.2 83 63-146 11-94 (103)
21 2dnm_A SRP46 splicing factor; 99.9 4.2E-21 1.4E-25 131.3 11.3 84 63-146 9-94 (103)
22 1x5u_A Splicing factor 3B subu 99.9 8.3E-21 2.8E-25 130.2 12.7 84 63-146 11-96 (105)
23 3bs9_A Nucleolysin TIA-1 isofo 99.9 6.1E-21 2.1E-25 126.4 11.5 80 66-145 5-86 (87)
24 2cpz_A CUG triplet repeat RNA- 99.9 1.8E-20 6E-25 130.7 14.3 85 62-146 20-106 (115)
25 2dng_A Eukaryotic translation 99.9 2.4E-20 8.1E-25 127.5 14.6 83 63-146 11-94 (103)
26 3md1_A Nuclear and cytoplasmic 99.9 9.6E-21 3.3E-25 124.3 12.1 79 67-145 1-81 (83)
27 2cqb_A Peptidyl-prolyl CIS-tra 99.9 5.6E-21 1.9E-25 130.4 11.2 83 64-146 9-93 (102)
28 2dnh_A Bruno-like 5, RNA bindi 99.9 1.6E-20 5.4E-25 128.8 13.5 84 63-146 11-98 (105)
29 2cph_A RNA binding motif prote 99.9 1.4E-20 4.8E-25 129.4 12.8 86 61-146 9-98 (107)
30 1x5t_A Splicing factor 3B subu 99.9 7.7E-21 2.6E-25 128.2 11.3 81 66-146 4-87 (96)
31 1x5s_A Cold-inducible RNA-bind 99.9 9.2E-21 3.1E-25 129.3 11.8 83 64-146 9-93 (102)
32 1wi8_A EIF-4B, eukaryotic tran 99.9 1.7E-20 5.8E-25 128.5 13.0 82 64-146 12-95 (104)
33 2lkz_A RNA-binding protein 5; 99.8 2.5E-21 8.6E-26 130.7 8.4 80 65-144 7-94 (95)
34 2cqc_A Arginine/serine-rich sp 99.8 1.5E-20 5.1E-25 126.5 12.2 82 63-144 11-94 (95)
35 1p27_B RNA-binding protein 8A; 99.8 9.4E-21 3.2E-25 130.1 11.5 84 63-146 19-104 (106)
36 1s79_A Lupus LA protein; RRM, 99.8 3.9E-21 1.3E-25 131.7 9.4 81 64-144 8-88 (103)
37 3s7r_A Heterogeneous nuclear r 99.8 1.3E-20 4.5E-25 124.8 11.6 80 63-142 7-87 (87)
38 2cq3_A RNA-binding protein 9; 99.8 5.1E-20 1.8E-24 125.8 14.8 84 62-146 10-94 (103)
39 2dgp_A Bruno-like 4, RNA bindi 99.8 1.2E-20 4.3E-25 129.5 11.6 85 62-146 8-97 (106)
40 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.6E-20 1.6E-24 126.1 14.2 84 62-146 10-94 (103)
41 2dhg_A TRNA selenocysteine ass 99.8 1.5E-20 5.2E-25 128.6 11.8 82 65-146 7-91 (104)
42 2ywk_A Putative RNA-binding pr 99.8 1.3E-20 4.5E-25 126.8 11.3 82 63-144 12-94 (95)
43 1x4h_A RNA-binding protein 28; 99.8 2.6E-20 9E-25 128.8 13.1 84 63-146 11-102 (111)
44 4f25_A Polyadenylate-binding p 99.8 1.2E-20 4E-25 131.8 11.3 80 66-146 4-84 (115)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.1E-21 3.1E-25 125.0 10.1 79 65-143 5-85 (85)
46 2cpe_A RNA-binding protein EWS 99.8 1.7E-20 5.8E-25 130.3 11.9 85 62-146 10-104 (113)
47 2jrs_A RNA-binding protein 39; 99.8 2.1E-20 7.3E-25 129.1 12.1 85 61-145 20-106 (108)
48 1wez_A HnRNP H', FTP-3, hetero 99.8 9.6E-21 3.3E-25 129.5 10.1 81 64-145 12-92 (102)
49 2dgu_A Heterogeneous nuclear r 99.8 4.6E-20 1.6E-24 126.2 13.5 76 65-147 9-85 (103)
50 2x1f_A MRNA 3'-END-processing 99.8 1.7E-20 5.9E-25 126.6 11.2 80 67-146 2-83 (96)
51 2e5h_A Zinc finger CCHC-type a 99.8 2.2E-20 7.7E-25 125.4 11.7 80 64-143 13-94 (94)
52 1oo0_B CG8781-PA, drosophila Y 99.8 1.6E-20 5.4E-25 129.9 11.2 84 63-146 22-107 (110)
53 3p5t_L Cleavage and polyadenyl 99.8 2.3E-21 8E-26 129.5 6.6 79 68-146 2-84 (90)
54 2div_A TRNA selenocysteine ass 99.8 2.4E-20 8.3E-25 126.5 11.6 81 65-145 7-94 (99)
55 1x4b_A Heterogeneous nuclear r 99.8 2.1E-20 7.2E-25 130.5 11.4 83 64-146 24-107 (116)
56 2cqg_A TDP-43, TAR DNA-binding 99.8 8.4E-20 2.9E-24 124.7 14.2 85 61-146 9-94 (103)
57 2m2b_A RNA-binding protein 10; 99.8 1E-20 3.6E-25 135.0 9.8 85 61-146 17-109 (131)
58 2khc_A Testis-specific RNP-typ 99.8 2.5E-20 8.4E-25 130.5 11.4 82 62-143 35-118 (118)
59 1x4c_A Splicing factor, argini 99.8 8.2E-20 2.8E-24 126.0 13.7 77 65-147 13-95 (108)
60 3ulh_A THO complex subunit 4; 99.8 4.4E-20 1.5E-24 126.9 12.1 80 64-143 26-106 (107)
61 4a8x_A RNA-binding protein wit 99.8 1.7E-20 6E-25 124.3 9.6 81 66-146 3-86 (88)
62 2dh8_A DAZ-associated protein 99.8 3.1E-20 1.1E-24 127.3 11.1 85 62-146 11-96 (105)
63 2cpf_A RNA binding motif prote 99.8 4.4E-20 1.5E-24 125.0 11.7 81 66-146 4-89 (98)
64 2jwn_A Embryonic polyadenylate 99.8 3.6E-20 1.2E-24 130.7 11.7 84 65-148 34-118 (124)
65 2dgv_A HnRNP M, heterogeneous 99.8 5.6E-20 1.9E-24 123.0 11.7 81 65-146 6-87 (92)
66 1x4a_A Splicing factor, argini 99.8 1.4E-19 4.7E-24 124.9 14.0 82 63-146 18-100 (109)
67 2la6_A RNA-binding protein FUS 99.8 5.2E-20 1.8E-24 125.0 11.6 80 64-143 10-99 (99)
68 2cpy_A RNA-binding protein 12; 99.8 2.6E-20 9E-25 129.8 10.1 83 63-145 11-94 (114)
69 2cqp_A RNA-binding protein 12; 99.8 3.1E-20 1.1E-24 125.7 10.0 81 65-145 13-95 (98)
70 2cq4_A RNA binding motif prote 99.8 1.8E-20 6.2E-25 130.4 8.8 83 63-145 21-104 (114)
71 2dgw_A Probable RNA-binding pr 99.8 1.1E-19 3.8E-24 121.4 12.3 82 64-146 7-88 (91)
72 3ns6_A Eukaryotic translation 99.8 5.6E-21 1.9E-25 130.2 6.0 79 66-144 5-92 (100)
73 2kxn_B Transformer-2 protein h 99.8 2.7E-20 9.1E-25 132.6 9.8 85 63-147 42-128 (129)
74 2dis_A Unnamed protein product 99.8 8.5E-20 2.9E-24 125.9 11.9 82 65-146 6-93 (109)
75 2hgn_A Heterogeneous nuclear r 99.8 3.6E-21 1.2E-25 138.6 5.1 83 63-146 42-124 (139)
76 3n9u_C Cleavage and polyadenyl 99.8 5.4E-20 1.8E-24 135.1 11.2 79 66-144 54-136 (156)
77 2mss_A Protein (musashi1); RNA 99.8 1.6E-20 5.4E-25 121.0 7.4 74 69-142 1-75 (75)
78 2dgx_A KIAA0430 protein; RRM d 99.8 9.9E-20 3.4E-24 123.0 11.5 79 66-146 8-91 (96)
79 1wg5_A Heterogeneous nuclear r 99.8 1.5E-19 5.1E-24 123.9 12.5 82 64-145 12-94 (104)
80 2fc9_A NCL protein; structure 99.8 1.6E-19 5.4E-24 122.9 12.2 81 63-146 11-92 (101)
81 2db1_A Heterogeneous nuclear r 99.8 9.5E-20 3.3E-24 127.7 11.2 81 64-144 14-97 (118)
82 2rs2_A Musashi-1, RNA-binding 99.8 9.7E-20 3.3E-24 125.9 11.0 84 63-146 21-105 (109)
83 2lea_A Serine/arginine-rich sp 99.8 3.7E-20 1.3E-24 132.9 9.0 85 63-147 43-129 (135)
84 2kt5_A RNA and export factor-b 99.8 2.4E-19 8.1E-24 126.6 13.0 84 63-146 31-115 (124)
85 2kn4_A Immunoglobulin G-bindin 99.8 1.5E-19 5.2E-24 132.6 12.3 84 63-146 66-151 (158)
86 2cpi_A CCR4-NOT transcription 99.8 1.2E-19 4.1E-24 125.8 11.1 84 63-146 11-102 (111)
87 1sjq_A Polypyrimidine tract-bi 99.8 6.1E-20 2.1E-24 125.7 9.0 77 65-146 14-93 (105)
88 1p1t_A Cleavage stimulation fa 99.8 3.2E-20 1.1E-24 126.9 7.6 81 66-146 7-89 (104)
89 2dnn_A RNA-binding protein 12; 99.8 7.4E-20 2.5E-24 126.5 9.4 78 66-144 15-92 (109)
90 2err_A Ataxin-2-binding protei 99.8 9.6E-20 3.3E-24 125.9 10.0 84 61-145 23-107 (109)
91 2fc8_A NCL protein; structure 99.8 4.2E-19 1.4E-23 121.0 12.7 82 62-146 10-93 (102)
92 1x5o_A RNA binding motif, sing 99.8 4.2E-19 1.4E-23 123.4 12.9 84 62-145 20-112 (114)
93 2dnp_A RNA-binding protein 14; 99.8 3.4E-19 1.2E-23 118.8 11.9 76 64-146 6-82 (90)
94 2ek1_A RNA-binding protein 12; 99.8 5.1E-20 1.8E-24 123.9 7.9 79 66-144 14-94 (95)
95 2dgt_A RNA-binding protein 30; 99.8 5E-19 1.7E-23 118.5 12.4 77 63-146 6-83 (92)
96 2cq1_A PTB-like protein L; RRM 99.8 6.3E-19 2.1E-23 120.2 13.0 79 63-146 11-92 (101)
97 2hgl_A HNRPF protein, heteroge 99.8 9.2E-20 3.2E-24 130.8 9.1 82 63-144 40-124 (136)
98 2dnq_A RNA-binding protein 4B; 99.8 5E-19 1.7E-23 118.0 11.8 75 65-146 6-81 (90)
99 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.7E-20 1.6E-24 125.5 6.9 82 63-145 15-98 (100)
100 1x4d_A Matrin 3; structural ge 99.8 2.1E-19 7.1E-24 122.7 9.7 77 65-146 13-93 (102)
101 3r27_A HnRNP L, heterogeneous 99.8 2.5E-19 8.6E-24 121.5 10.0 76 65-145 19-97 (100)
102 1x4e_A RNA binding motif, sing 99.8 2.6E-20 8.8E-25 122.9 4.9 78 66-143 4-83 (85)
103 2cpd_A Apobec-1 stimulating pr 99.8 1.3E-18 4.5E-23 118.0 13.4 77 63-146 11-90 (99)
104 1iqt_A AUF1, heterogeneous nuc 99.8 5.1E-20 1.8E-24 118.6 6.1 74 69-142 1-75 (75)
105 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5.7E-19 1.9E-23 126.8 12.2 81 62-142 58-140 (140)
106 1why_A Hypothetical protein ri 99.8 6.8E-19 2.3E-23 119.0 11.8 78 64-146 14-94 (97)
107 2wbr_A GW182, gawky, LD47780P; 99.8 2.2E-19 7.5E-24 118.1 8.8 73 66-143 6-79 (89)
108 2ytc_A PRE-mRNA-splicing facto 99.8 4.6E-19 1.6E-23 116.8 10.4 76 63-143 8-85 (85)
109 2cpj_A Non-POU domain-containi 99.8 6.8E-19 2.3E-23 119.4 11.5 79 63-146 11-90 (99)
110 3beg_B Splicing factor, argini 99.8 1.8E-19 6.3E-24 125.7 8.6 75 66-146 15-95 (115)
111 1uaw_A Mouse-musashi-1; RNP-ty 99.8 8.1E-20 2.8E-24 118.2 6.3 74 68-142 1-76 (77)
112 1wel_A RNA-binding protein 12; 99.8 1.6E-19 5.6E-24 127.5 8.4 81 64-144 22-103 (124)
113 2hvz_A Splicing factor, argini 99.8 3.4E-19 1.2E-23 121.3 9.6 75 68-146 1-76 (101)
114 1x4g_A Nucleolysin TIAR; struc 99.8 8.7E-19 3E-23 120.9 11.8 79 63-146 21-100 (109)
115 2ki2_A SS-DNA binding protein 99.8 4.8E-20 1.6E-24 122.9 5.2 78 68-146 2-81 (90)
116 1wex_A Hypothetical protein (r 99.8 8.7E-19 3E-23 120.1 11.6 78 64-146 12-92 (104)
117 2nlw_A Eukaryotic translation 99.8 2.3E-19 7.8E-24 123.2 8.7 80 65-145 13-100 (105)
118 2lmi_A GRSF-1, G-rich sequence 99.8 1.1E-19 3.8E-24 125.2 6.6 81 64-144 8-91 (107)
119 2lcw_A RNA-binding protein FUS 99.7 5.7E-21 1.9E-25 133.4 0.0 83 64-146 4-96 (116)
120 2dha_A FLJ20171 protein; RRM d 99.8 2.1E-19 7.2E-24 126.8 8.1 79 66-144 22-104 (123)
121 2jvr_A Nucleolar protein 3; RN 99.8 3.7E-19 1.3E-23 123.3 9.0 78 66-146 27-106 (111)
122 2cpx_A Hypothetical protein FL 99.8 1.7E-18 5.7E-23 120.5 12.3 80 64-146 22-106 (115)
123 2ad9_A Polypyrimidine tract-bi 99.8 6.3E-19 2.1E-23 123.4 9.9 77 65-146 29-108 (119)
124 2kvi_A Nuclear polyadenylated 99.8 3.7E-19 1.3E-23 120.1 8.5 76 64-146 7-84 (96)
125 2a3j_A U1 small nuclear ribonu 99.8 7.7E-19 2.6E-23 124.6 10.5 80 65-146 27-111 (127)
126 2e5j_A Methenyltetrahydrofolat 99.8 1E-18 3.6E-23 118.1 10.7 79 64-146 16-95 (97)
127 2jvo_A Nucleolar protein 3; nu 99.8 8.4E-19 2.9E-23 121.0 10.3 79 61-146 25-104 (108)
128 2krb_A Eukaryotic translation 99.8 2.2E-19 7.4E-24 117.5 6.7 72 67-139 1-80 (81)
129 1fj7_A Nucleolin RBD1, protein 99.8 8E-20 2.7E-24 124.4 4.8 81 65-146 15-96 (101)
130 1wf1_A RNA-binding protein RAL 99.8 3.2E-18 1.1E-22 118.3 12.7 76 64-146 24-101 (110)
131 2xs2_A Deleted in azoospermia- 99.8 4.2E-19 1.4E-23 121.0 8.1 81 65-146 7-87 (102)
132 2xnq_A Nuclear polyadenylated 99.8 2.1E-18 7.1E-23 116.7 11.3 76 63-145 18-95 (97)
133 2e5g_A U6 snRNA-specific termi 99.8 3E-18 1E-22 115.1 11.8 77 65-146 6-83 (94)
134 2hgm_A HNRPF protein, heteroge 99.8 4.7E-19 1.6E-23 125.4 8.1 79 65-144 40-120 (126)
135 1fjc_A Nucleolin RBD2, protein 99.8 6.4E-19 2.2E-23 118.7 8.5 80 63-146 12-92 (96)
136 2la4_A Nuclear and cytoplasmic 99.8 7.3E-19 2.5E-23 119.6 8.7 75 65-144 25-100 (101)
137 2cqh_A IGF-II mRNA-binding pro 99.8 1.6E-18 5.6E-23 116.1 10.2 76 65-146 6-84 (93)
138 1l3k_A Heterogeneous nuclear r 99.8 1.4E-18 4.9E-23 131.0 11.1 82 65-146 102-184 (196)
139 1x4f_A Matrin 3; structural ge 99.8 9.8E-19 3.3E-23 121.1 9.3 78 64-146 22-103 (112)
140 3md3_A Nuclear and cytoplasmic 99.8 4.3E-18 1.5E-22 124.7 13.2 81 63-143 83-165 (166)
141 1nu4_A U1A RNA binding domain; 99.8 5.9E-19 2E-23 119.1 7.4 80 65-146 6-90 (97)
142 2f3j_A RNA and export factor b 99.8 2.8E-18 9.7E-23 128.4 11.5 81 65-145 86-167 (177)
143 3lqv_A PRE-mRNA branch site pr 99.8 2.5E-18 8.5E-23 119.7 9.8 78 66-145 7-85 (115)
144 1whx_A Hypothetical protein ri 99.8 1.4E-18 4.7E-23 120.5 8.3 75 66-145 9-84 (111)
145 3egn_A RNA-binding protein 40; 99.8 1.3E-18 4.6E-23 125.7 8.2 82 66-147 44-132 (143)
146 2i2y_A Fusion protein consists 99.8 4.1E-18 1.4E-22 124.1 10.8 80 62-145 68-148 (150)
147 4f02_A Polyadenylate-binding p 99.8 5.9E-18 2E-22 130.0 12.2 79 66-144 14-94 (213)
148 1x5p_A Negative elongation fac 99.8 2.1E-17 7.1E-22 111.6 12.8 77 63-146 11-88 (97)
149 1l3k_A Heterogeneous nuclear r 99.7 1.1E-17 3.8E-22 126.1 11.9 82 64-145 10-92 (196)
150 1fxl_A Paraneoplastic encephal 99.7 1.7E-17 5.7E-22 121.7 12.3 79 67-145 2-82 (167)
151 4f02_A Polyadenylate-binding p 99.7 6.2E-18 2.1E-22 129.9 9.8 79 66-145 102-181 (213)
152 1sjr_A Polypyrimidine tract-bi 99.7 2.1E-17 7.2E-22 121.3 11.9 78 66-146 45-125 (164)
153 2e44_A Insulin-like growth fac 99.7 1.4E-17 4.7E-22 112.1 9.5 78 65-145 13-92 (96)
154 2qfj_A FBP-interacting repress 99.7 2.8E-17 9.7E-22 125.6 12.4 82 65-146 123-206 (216)
155 3md3_A Nuclear and cytoplasmic 99.7 2.6E-17 8.8E-22 120.6 11.7 79 68-146 1-80 (166)
156 1b7f_A Protein (SXL-lethal pro 99.7 1.4E-17 4.8E-22 122.4 10.1 81 66-146 2-84 (168)
157 2cq2_A Hypothetical protein LO 99.7 1.1E-17 3.8E-22 115.9 8.9 75 66-145 24-106 (114)
158 2j8a_A Histone-lysine N-methyl 99.7 1.2E-17 4E-22 117.1 9.0 77 68-144 3-95 (136)
159 3nmr_A Cugbp ELAV-like family 99.7 3.1E-17 1.1E-21 121.2 11.9 79 64-142 92-174 (175)
160 1wg1_A KIAA1579 protein, homol 99.7 1.2E-17 3.9E-22 110.9 8.6 73 66-144 4-77 (88)
161 3d2w_A TAR DNA-binding protein 99.7 1.3E-17 4.6E-22 111.0 8.7 78 64-146 8-85 (89)
162 2hzc_A Splicing factor U2AF 65 99.7 2.4E-17 8.2E-22 108.8 9.5 72 65-141 4-86 (87)
163 2cjk_A Nuclear polyadenylated 99.7 8.2E-18 2.8E-22 123.7 8.0 80 66-145 86-166 (167)
164 2voo_A Lupus LA protein; RNA-b 99.7 3.6E-17 1.2E-21 124.0 11.6 80 65-144 107-186 (193)
165 1wf0_A TDP-43, TAR DNA-binding 99.7 1.3E-17 4.5E-22 110.6 8.0 76 66-146 4-79 (88)
166 2yh0_A Splicing factor U2AF 65 99.7 9.6E-17 3.3E-21 121.1 13.7 82 65-146 112-195 (198)
167 2g4b_A Splicing factor U2AF 65 99.7 4.2E-17 1.5E-21 120.4 11.5 77 66-142 93-171 (172)
168 3zzy_A Polypyrimidine tract-bi 99.7 3.7E-17 1.3E-21 115.8 10.5 77 66-146 27-107 (130)
169 1b7f_A Protein (SXL-lethal pro 99.7 1.1E-16 3.9E-21 117.5 11.9 79 64-142 86-168 (168)
170 2e5i_A Heterogeneous nuclear r 99.7 1.9E-16 6.6E-21 111.5 12.2 74 68-146 26-103 (124)
171 1fxl_A Paraneoplastic encephal 99.7 1.5E-16 5E-21 116.6 11.7 78 65-142 86-167 (167)
172 2dnl_A Cytoplasmic polyadenyla 99.7 1E-16 3.6E-21 111.4 10.1 76 65-143 6-86 (114)
173 3tyt_A Heterogeneous nuclear r 99.7 8.3E-17 2.9E-21 123.1 10.3 76 66-145 3-80 (205)
174 1fje_B Nucleolin RBD12, protei 99.7 1.3E-16 4.4E-21 118.3 10.9 79 63-145 95-174 (175)
175 2qfj_A FBP-interacting repress 99.7 1E-16 3.5E-21 122.5 9.9 79 66-144 27-107 (216)
176 2diu_A KIAA0430 protein; struc 99.7 1.5E-16 5.3E-21 105.6 9.1 71 67-146 8-85 (96)
177 2ghp_A U4/U6 snRNA-associated 99.7 1.8E-16 6.1E-21 126.9 11.4 82 64-145 207-291 (292)
178 2bz2_A Negative elongation fac 99.7 1.6E-16 5.5E-21 111.7 9.0 76 64-146 36-112 (121)
179 2cjk_A Nuclear polyadenylated 99.7 1.2E-16 4.1E-21 117.4 8.6 78 66-144 2-80 (167)
180 2pe8_A Splicing factor 45; RRM 99.7 7.9E-16 2.7E-20 105.5 11.6 80 65-144 6-93 (105)
181 3pgw_A U1-A; protein-RNA compl 99.7 5.6E-16 1.9E-20 123.4 11.3 80 64-145 6-90 (282)
182 3nmr_A Cugbp ELAV-like family 99.7 3.9E-16 1.3E-20 115.3 9.7 80 66-145 2-88 (175)
183 3smz_A Protein raver-1, ribonu 99.6 1E-15 3.5E-20 122.0 11.7 83 64-146 181-265 (284)
184 3u1l_A PRE-mRNA-splicing facto 99.6 2.4E-16 8.2E-21 122.8 7.8 78 64-146 131-230 (240)
185 3smz_A Protein raver-1, ribonu 99.6 1.8E-15 6.3E-20 120.5 12.4 80 66-145 94-175 (284)
186 2adc_A Polypyrimidine tract-bi 99.6 1.3E-15 4.4E-20 118.1 10.0 78 64-145 31-110 (229)
187 1fje_B Nucleolin RBD12, protei 99.6 1.6E-16 5.5E-21 117.8 3.8 83 63-145 9-91 (175)
188 3pgw_A U1-A; protein-RNA compl 99.6 3.3E-15 1.1E-19 118.9 11.3 76 64-143 204-281 (282)
189 3sde_A Paraspeckle component 1 99.6 3.1E-15 1.1E-19 118.2 11.0 77 63-144 18-95 (261)
190 3sde_A Paraspeckle component 1 99.6 4.3E-15 1.5E-19 117.4 10.9 80 66-145 95-179 (261)
191 2dit_A HIV TAT specific factor 99.6 1.7E-14 5.8E-19 99.8 12.7 81 63-146 11-103 (112)
192 1qm9_A Polypyrimidine tract-bi 99.6 1.3E-15 4.6E-20 115.1 7.4 76 66-145 2-79 (198)
193 2adc_A Polypyrimidine tract-bi 99.6 9.8E-15 3.3E-19 113.1 12.3 76 66-145 150-228 (229)
194 1qm9_A Polypyrimidine tract-bi 99.6 5.4E-15 1.9E-19 111.7 10.4 76 66-145 119-197 (198)
195 1jmt_A Splicing factor U2AF 35 99.6 7.4E-16 2.5E-20 105.5 5.0 71 72-142 20-103 (104)
196 2g4b_A Splicing factor U2AF 65 99.6 7.5E-15 2.6E-19 108.2 10.4 75 66-145 3-88 (172)
197 3tyt_A Heterogeneous nuclear r 99.6 3.6E-15 1.2E-19 114.0 8.5 76 66-142 122-204 (205)
198 2ghp_A U4/U6 snRNA-associated 99.6 5.1E-15 1.8E-19 118.4 9.7 81 66-146 116-198 (292)
199 2yh0_A Splicing factor U2AF 65 99.6 1.1E-14 3.8E-19 109.7 10.2 76 66-146 3-89 (198)
200 3v4m_A Splicing factor U2AF 65 99.6 1.5E-14 5.3E-19 99.0 8.7 80 65-144 3-96 (105)
201 3ue2_A Poly(U)-binding-splicin 99.5 7.6E-14 2.6E-18 97.5 9.4 78 66-143 19-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.1E-12 3.6E-17 89.0 12.6 64 77-146 27-91 (100)
203 3tht_A Alkylated DNA repair pr 99.5 2.2E-13 7.5E-18 111.3 9.1 74 64-142 15-96 (345)
204 3s6e_A RNA-binding protein 39; 99.4 4E-12 1.4E-16 88.1 9.7 75 66-143 6-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 2.7E-11 9.3E-16 79.6 9.1 73 66-145 6-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 1.7E-11 5.8E-16 85.4 8.1 74 64-142 15-93 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 2.3E-10 8E-15 75.5 7.1 72 65-143 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 1.6E-09 5.6E-14 83.2 7.8 64 80-143 142-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.8 3.2E-08 1.1E-12 66.7 9.1 72 66-142 20-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.2 4.6E-05 1.6E-09 50.8 11.1 73 66-145 7-84 (104)
211 1wey_A Calcipressin 1; structu 97.9 4.6E-05 1.6E-09 51.0 7.4 74 67-145 5-84 (104)
212 1wwh_A Nucleoporin 35, nucleop 97.6 0.00049 1.7E-08 47.2 8.8 72 65-142 22-94 (119)
213 1uw4_A UPF3X; nonsense mediate 97.6 0.00056 1.9E-08 44.8 8.5 66 68-133 2-71 (91)
214 1whv_A Poly(A)-specific ribonu 97.3 0.00094 3.2E-08 44.0 7.1 54 66-127 15-69 (100)
215 3ctr_A Poly(A)-specific ribonu 97.2 0.00066 2.3E-08 44.9 5.2 53 68-128 7-60 (101)
216 3pq1_A Poly(A) RNA polymerase; 96.9 0.00061 2.1E-08 57.5 3.8 57 66-127 52-108 (464)
217 3p3d_A Nucleoporin 53; structu 96.8 0.0044 1.5E-07 43.1 6.7 75 68-143 8-97 (132)
218 2l08_A Regulator of nonsense t 96.6 0.0057 1.9E-07 40.3 5.7 67 67-133 9-79 (97)
219 2kn4_A Immunoglobulin G-bindin 95.6 0.011 3.6E-07 42.2 4.0 33 96-129 2-35 (158)
220 2i2y_A Fusion protein consists 94.7 0.01 3.5E-07 41.9 1.4 39 105-144 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 90.7 1 3.5E-05 38.4 8.4 54 67-128 440-494 (507)
222 4f25_A Polyadenylate-binding p 88.5 0.2 6.8E-06 33.5 1.9 19 65-83 95-113 (115)
223 2g0c_A ATP-dependent RNA helic 79.4 6.8 0.00023 23.7 6.0 67 69-143 2-75 (76)
224 4eyt_A Telomerase associated p 59.5 32 0.0011 22.0 7.6 53 66-125 11-63 (129)
225 4e8u_A Putative uncharacterize 53.4 60 0.002 23.3 7.4 58 69-128 14-83 (172)
226 3swz_A Steroid 17-alpha-hydrox 43.8 34 0.0012 28.0 5.3 57 70-134 17-77 (494)
227 3fut_A Dimethyladenosine trans 37.0 35 0.0012 26.2 4.0 31 68-99 111-141 (271)
228 3tbg_A Cytochrome P450 2D6; mo 34.2 23 0.0008 28.7 2.7 55 71-133 20-77 (479)
229 3uzu_A Ribosomal RNA small sub 33.0 20 0.00067 27.8 1.9 33 68-100 115-147 (279)
230 4bby_A Alkyldihydroxyacetoneph 31.9 42 0.0014 29.3 4.1 52 74-125 350-405 (658)
231 3ts2_A Protein LIN-28 homolog 31.5 5.7 0.0002 27.9 -1.3 27 83-116 3-29 (148)
232 3fry_A Probable copper-exporti 30.6 79 0.0027 18.1 6.3 54 67-126 6-59 (73)
233 3r4h_A Coiled coil helix CC-TE 27.9 61 0.0021 15.9 3.4 17 18-34 4-20 (34)
234 2v94_A RPS24, 30S ribosomal pr 26.6 1.4E+02 0.0047 19.6 5.1 46 78-124 38-89 (107)
235 1ywx_A 30S ribosomal protein S 26.1 1.2E+02 0.0043 19.6 4.6 46 77-123 28-79 (102)
236 1qyr_A KSGA, high level kasuga 25.5 54 0.0018 24.8 3.2 30 68-97 91-120 (252)
237 3ftd_A Dimethyladenosine trans 25.0 48 0.0016 24.9 2.9 32 68-99 96-127 (249)
238 1xn9_A 30S ribosomal protein S 24.6 1.5E+02 0.005 19.2 6.4 48 77-125 28-81 (101)
239 2i9x_A Putative septation prot 24.4 1.2E+02 0.0041 19.1 4.1 25 93-117 5-30 (87)
240 3tqs_A Ribosomal RNA small sub 23.8 25 0.00084 26.8 1.0 31 70-100 99-129 (255)
241 2g1d_A 30S ribosomal protein S 23.2 46 0.0016 21.5 2.1 45 78-123 30-80 (98)
242 2pk2_A Cyclin-T1, protein TAT; 23.2 17 0.00059 29.3 0.0 12 78-89 228-239 (358)
243 2xze_Q Charged multivesicular 22.9 50 0.0017 17.6 1.8 14 13-26 23-36 (40)
244 1i4w_A Mitochondrial replicati 22.8 68 0.0023 25.8 3.4 23 68-90 143-165 (353)
245 2ia9_A Putative septation prot 21.9 1.4E+02 0.0047 19.3 4.1 25 93-117 5-30 (100)
246 2ot8_C HnRNP M, heterogeneous 21.4 33 0.0011 16.8 0.8 7 189-195 18-24 (30)
247 2i9z_A Putative septation prot 20.8 1.5E+02 0.0052 19.3 4.2 25 93-117 5-30 (105)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.90 E-value=5.8e-23 Score=150.84 Aligned_cols=84 Identities=20% Similarity=0.407 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
....++|||+|||+++|+++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||++.|.|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999998 7999999999999999999999 6999999999999999
Q ss_pred ccCCCC
Q 029268 142 KRTNVP 147 (196)
Q Consensus 142 ~~~~~~ 147 (196)
+++..+
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987654
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=5.2e-23 Score=140.12 Aligned_cols=79 Identities=25% Similarity=0.490 Sum_probs=75.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
..++|||+|||+++|+++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 56789999999999999999999999999999999998 7999999999999999999999 799999999999999997
Q ss_pred C
Q 029268 144 T 144 (196)
Q Consensus 144 ~ 144 (196)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 3
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.89 E-value=1.7e-23 Score=162.97 Aligned_cols=79 Identities=24% Similarity=0.413 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcC--ceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCG--TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G--~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
..++|||+|||+++|+++|+++|++|| .|..|.|+.++ +++++|||||+|.+.++|++|| .||++.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999997 8999999999999999999999 6999999999999998
Q ss_pred ccC
Q 029268 142 KRT 144 (196)
Q Consensus 142 ~~~ 144 (196)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 4
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.89 E-value=7.6e-22 Score=166.81 Aligned_cols=82 Identities=27% Similarity=0.607 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
...++|||+|||+.||+++|.++|++||.|..|.|+.+. +++++|||||+|.+.++|++|| .||++.|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999987 8999999999999999999999 89999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
.+..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8654
No 5
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.87 E-value=6.3e-22 Score=146.67 Aligned_cols=85 Identities=26% Similarity=0.449 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999997 8999999999999999999999 799999999999999
Q ss_pred eccCCCC
Q 029268 141 VKRTNVP 147 (196)
Q Consensus 141 ~~~~~~~ 147 (196)
++.+..+
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9977543
No 6
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.3e-21 Score=132.85 Aligned_cols=84 Identities=23% Similarity=0.487 Sum_probs=77.4
Q ss_pred CcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeE
Q 029268 61 NREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 138 (196)
Q Consensus 61 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~ 138 (196)
...+...++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .+++ .|.|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3455678999999999999999999999999999999999987 7999999999999999999999 6887 89999999
Q ss_pred EEeccCC
Q 029268 139 VTVKRTN 145 (196)
Q Consensus 139 v~~~~~~ 145 (196)
|.++...
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9999764
No 7
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=135.34 Aligned_cols=82 Identities=20% Similarity=0.455 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
...++|||+|||.++++++|+++|++||.|..|.|+.+.+++++|||||+|.+.++|++|| .||+..|.|+.|.|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999999999999889999999999999999999999 799999999999999998
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
++.
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 644
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=135.05 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999999998 7999999999999999999999 79999999999999998
Q ss_pred cC
Q 029268 143 RT 144 (196)
Q Consensus 143 ~~ 144 (196)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 9
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.87 E-value=8.1e-22 Score=139.62 Aligned_cols=84 Identities=26% Similarity=0.435 Sum_probs=78.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999997 8999999999999999999999 799999999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
++.+..
T Consensus 98 ~a~~~~ 103 (126)
T 3ex7_B 98 WCFVRG 103 (126)
T ss_dssp ESEESS
T ss_pred EecCCC
Confidence 997654
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=3e-22 Score=134.27 Aligned_cols=81 Identities=20% Similarity=0.364 Sum_probs=74.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hh-CCCeeCCeEeEEEec
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCG-TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HL-NESELHGRQLKVTVK 142 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G-~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l-~~~~~~g~~i~v~~~ 142 (196)
+.+|||+|||+++|+++|+++|++|| .|.+|+|++++ +++++|||||+|.+.++|++|| .+ ++..|+|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999998 7999999999999999999999 55 567899999999999
Q ss_pred cCCCC
Q 029268 143 RTNVP 147 (196)
Q Consensus 143 ~~~~~ 147 (196)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87543
No 11
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.86 E-value=5.6e-21 Score=137.50 Aligned_cols=85 Identities=25% Similarity=0.422 Sum_probs=78.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
......++|||+|||.++++++|+++|+.||.|..|.|+.++ +++++|||||+|.+.++|.+|| .||+..|.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345567899999999999999999999999999999999987 7899999999999999999999 69999999999999
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
.++++..
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998753
No 12
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=1.7e-20 Score=130.75 Aligned_cols=86 Identities=24% Similarity=0.500 Sum_probs=79.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
......++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345577899999999999999999999999999999999997 8999999999999999999999 79999999999999
Q ss_pred EeccCCCC
Q 029268 140 TVKRTNVP 147 (196)
Q Consensus 140 ~~~~~~~~ 147 (196)
.++++..+
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99987543
No 13
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.6e-21 Score=129.08 Aligned_cols=81 Identities=28% Similarity=0.585 Sum_probs=76.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
.+++|||+|||.++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 56899999999999999999999999999999999987 7999999999999999999999 699999999999999998
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
++.
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 754
No 14
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.6e-21 Score=130.27 Aligned_cols=85 Identities=24% Similarity=0.416 Sum_probs=79.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
......++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345567899999999999999999999999999999999997 8999999999999999999999 69999999999999
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
.+++++.
T Consensus 90 ~~a~~~~ 96 (103)
T 2cq0_A 90 EWAKPST 96 (103)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998754
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.3e-21 Score=129.10 Aligned_cols=84 Identities=25% Similarity=0.561 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||.++++++|+++|++||.|..|.|+.+++++++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999999999999989999999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
++++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98754
No 16
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2e-20 Score=130.12 Aligned_cols=84 Identities=29% Similarity=0.406 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||+++++++|+++|.+||.|..|.|+.+++++++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 344578999999999999999999999999999999999988999999999999999999999 6999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
++...
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 97643
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=7.1e-21 Score=129.20 Aligned_cols=83 Identities=22% Similarity=0.514 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
....++|||+|||.++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||.||+..|.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3467899999999999999999999999999999999987 799999999999999999999999999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
.++.
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8654
No 18
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=5.3e-21 Score=127.19 Aligned_cols=83 Identities=59% Similarity=1.000 Sum_probs=78.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
..++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|+.||+..|.|+.|.|.++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 45799999999999999999999999999999999997 89999999999999999999999999999999999999988
Q ss_pred CCCC
Q 029268 145 NVPG 148 (196)
Q Consensus 145 ~~~~ 148 (196)
+.++
T Consensus 85 ~~pg 88 (89)
T 3ucg_A 85 NRPG 88 (89)
T ss_dssp TSCC
T ss_pred CCCC
Confidence 6654
No 19
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.4e-21 Score=129.39 Aligned_cols=82 Identities=26% Similarity=0.496 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
...++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999999998 8999999999999999999999 89999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
+++.
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8754
No 20
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=9.9e-21 Score=129.39 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||+++++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4457889999999999999999999999999999999998 8999999999999999999999 6999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+++..
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 98754
No 21
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=131.27 Aligned_cols=84 Identities=29% Similarity=0.519 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34467899999999999999999999999999999999987 7999999999999999999999 699999999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
++++..
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998754
No 22
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.3e-21 Score=130.16 Aligned_cols=84 Identities=26% Similarity=0.466 Sum_probs=78.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567899999999999999999999999999999999998 8999999999999999999999 699999999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
++++..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 998754
No 23
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=6.1e-21 Score=126.35 Aligned_cols=80 Identities=24% Similarity=0.455 Sum_probs=74.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
+.++|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|+|+.|.|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56799999999999999999999999999999999997 8999999999999999999999 699999999999999997
Q ss_pred CC
Q 029268 144 TN 145 (196)
Q Consensus 144 ~~ 145 (196)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 24
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=1.8e-20 Score=130.69 Aligned_cols=85 Identities=21% Similarity=0.351 Sum_probs=79.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
......++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999998 8999999999999999999999 89999999999999
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
.+++++.
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpz_A 100 QLKRSKN 106 (115)
T ss_dssp ECCCCSC
T ss_pred EEcCCCC
Confidence 9998654
No 25
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=2.4e-20 Score=127.54 Aligned_cols=83 Identities=24% Similarity=0.454 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||+++++++|+++|++|| |..|.|+.++ +++++|||||+|.+.++|++||.||+..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence 344678999999999999999999999997 9999999998 79999999999999999999999999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+++..
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98654
No 26
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=9.6e-21 Score=124.30 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=75.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
+.+|||+|||.++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|+ .||+..|+|+.|.|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999996 8999999999999999999999 6999999999999999986
Q ss_pred C
Q 029268 145 N 145 (196)
Q Consensus 145 ~ 145 (196)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.6e-21 Score=130.37 Aligned_cols=83 Identities=27% Similarity=0.495 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
....++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3467899999999999999999999999999999999986 7999999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+++..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98754
No 28
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1.6e-20 Score=128.78 Aligned_cols=84 Identities=27% Similarity=0.394 Sum_probs=78.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCC---eEeE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG---RQLK 138 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g---~~i~ 138 (196)
.....++|||+|||+++++++|+++|++||.|..|.|+.+++++++|||||+|.+.++|++|| .||+..|.| +.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 334678999999999999999999999999999999999989999999999999999999999 799999988 9999
Q ss_pred EEeccCCC
Q 029268 139 VTVKRTNV 146 (196)
Q Consensus 139 v~~~~~~~ 146 (196)
|.++++..
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99998754
No 29
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=129.38 Aligned_cols=86 Identities=20% Similarity=0.487 Sum_probs=79.2
Q ss_pred CcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeC-C-CCCceeEEEEEecCHHHHHHHH-hh-CCCeeCCeE
Q 029268 61 NREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-K-FGQPKGYAYVEFLQSEAVQEAL-HL-NESELHGRQ 136 (196)
Q Consensus 61 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~-~-~~~~~g~afv~f~~~~~a~~al-~l-~~~~~~g~~ 136 (196)
.......++|||+|||+.+++++|+++|++||.|..|.|+.+ + ++.++|||||+|.+.++|++|| .| |+..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344557789999999999999999999999999999999998 4 8999999999999999999999 79 999999999
Q ss_pred eEEEeccCCC
Q 029268 137 LKVTVKRTNV 146 (196)
Q Consensus 137 i~v~~~~~~~ 146 (196)
|.|.++++..
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998754
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.7e-21 Score=128.19 Aligned_cols=81 Identities=26% Similarity=0.447 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEE-EEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV-TIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~-~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
..++|||+|||+++++++|+++|++||.|..| .|+.++ ++.++|||||+|.+.++|++|| .||+..|.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 999986 8999999999999999999999 69999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
.++.
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8654
No 31
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.2e-21 Score=129.28 Aligned_cols=83 Identities=22% Similarity=0.523 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
....++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999987 7899999999999999999999 8999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+++..
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 98754
No 32
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=128.51 Aligned_cols=82 Identities=26% Similarity=0.500 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-C-CCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-F-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~-~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~ 141 (196)
....++|||+|||+.+++++|+++|++|| |..|.|+.++ + ++++|||||+|.+.++|++||.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 34668999999999999999999999999 9999999988 5 8999999999999999999999999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
++++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98754
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=130.72 Aligned_cols=80 Identities=16% Similarity=0.351 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCc--eeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCC----eeCCeE
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGT--VNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNES----ELHGRQ 136 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~----~~~g~~ 136 (196)
....+|||+|||+++|+++|+++|++||. |.+|+|++|+ +++++|||||+|.+.++|++|| .||+. .|+|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 35678999999999999999999999995 6799999998 7999999999999999999999 79886 589999
Q ss_pred eEEEeccC
Q 029268 137 LKVTVKRT 144 (196)
Q Consensus 137 i~v~~~~~ 144 (196)
|.|.+|++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999975
No 34
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=126.47 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=76.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999987 7899999999999999999999 699999999999999
Q ss_pred eccC
Q 029268 141 VKRT 144 (196)
Q Consensus 141 ~~~~ 144 (196)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 35
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.4e-21 Score=130.11 Aligned_cols=84 Identities=26% Similarity=0.435 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34467899999999999999999999999999999999997 7999999999999999999999 699999999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
+++++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997654
No 36
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-21 Score=131.70 Aligned_cols=81 Identities=19% Similarity=0.308 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEecc
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~ 143 (196)
....++|||+|||+++|+++|+++|++||.|.+|.|+.++.+.++|||||+|.+.++|++||.++++.|+|+.|.|.++.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 44668999999999999999999999999999999999888999999999999999999999999999999999999874
Q ss_pred C
Q 029268 144 T 144 (196)
Q Consensus 144 ~ 144 (196)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 37
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=1.3e-20 Score=124.83 Aligned_cols=80 Identities=25% Similarity=0.535 Sum_probs=74.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||.+++..|+|+.|.|.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999997 79999999999999999999998788999999999987
Q ss_pred c
Q 029268 142 K 142 (196)
Q Consensus 142 ~ 142 (196)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 38
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.1e-20 Score=125.81 Aligned_cols=84 Identities=23% Similarity=0.432 Sum_probs=77.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
......++|||+|||+++++++|+++|++||.|..|.|+.+..+ ++|||||+|.+.++|++|| .||+..|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556789999999999999999999999999999999988644 8999999999999999999 799999999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cq3_A 89 NATARV 94 (103)
T ss_dssp ECCSSC
T ss_pred EcccCC
Confidence 998754
No 39
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=1.2e-20 Score=129.50 Aligned_cols=85 Identities=20% Similarity=0.419 Sum_probs=78.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCee---CCeE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESEL---HGRQ 136 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~---~g~~ 136 (196)
......++|||+|||.++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345577899999999999999999999999999999999987 7999999999999999999999 7999987 8999
Q ss_pred eEEEeccCCC
Q 029268 137 LKVTVKRTNV 146 (196)
Q Consensus 137 i~v~~~~~~~ 146 (196)
|.|.++++..
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999998644
No 40
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.6e-20 Score=126.06 Aligned_cols=84 Identities=24% Similarity=0.424 Sum_probs=76.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
......++|||+|||+.+++++|+++|++||.|..|.|+.++.. ++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34456789999999999999999999999999999999988633 6899999999999999999 699999999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998754
No 41
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=128.63 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhh-cCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCe-eCCeEeEEEe
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQS-CGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESE-LHGRQLKVTV 141 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~-~~g~~i~v~~ 141 (196)
...++|||+|||+++++++|+++|++ ||.|..|.|+.+++++++|||||+|.+.++|++|| .||+.. |+|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45689999999999999999999999 99999999999989999999999999999999999 699999 9999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+.++.
T Consensus 87 a~~~~ 91 (104)
T 2dhg_A 87 AIPKA 91 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97644
No 42
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=126.79 Aligned_cols=82 Identities=34% Similarity=0.551 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+++++++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 344678999999999999999999999999999999999988999999999999999999999 6999999999999999
Q ss_pred ccC
Q 029268 142 KRT 144 (196)
Q Consensus 142 ~~~ 144 (196)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 43
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-20 Score=128.83 Aligned_cols=84 Identities=27% Similarity=0.467 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhC------CCeeCC
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLN------ESELHG 134 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~------~~~~~g 134 (196)
.....++|||+|||+++++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++|| .|| +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34467899999999999999999999999999999999997 7899999999999999999999 799 999999
Q ss_pred eEeEEEeccCCC
Q 029268 135 RQLKVTVKRTNV 146 (196)
Q Consensus 135 ~~i~v~~~~~~~ 146 (196)
+.|.|.++.++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999998754
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.2e-20 Score=131.76 Aligned_cols=80 Identities=25% Similarity=0.427 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
...+|||+|||+++++++|+++|++||.|.+|+|+.+. +.++|||||+|.+.++|++|| .||++.|+|+.|.|.++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 35689999999999999999999999999999999886 447999999999999999999 7999999999999999976
Q ss_pred CC
Q 029268 145 NV 146 (196)
Q Consensus 145 ~~ 146 (196)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=9.1e-21 Score=124.96 Aligned_cols=79 Identities=28% Similarity=0.537 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
...++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|+ .||+..|+|+.|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 367899999999999999999999999999999999886 8899999999999999999999 79999999999999998
Q ss_pred c
Q 029268 143 R 143 (196)
Q Consensus 143 ~ 143 (196)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 46
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=130.31 Aligned_cols=85 Identities=28% Similarity=0.560 Sum_probs=78.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCcee--------EEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCe
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVN--------RVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESE 131 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~ 131 (196)
......++|||+|||+++++++|+++|++||.|. .|.|+.++ +++++|||||+|.+.++|++|| .||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3455778999999999999999999999999999 69999996 8999999999999999999999 699999
Q ss_pred eCCeEeEEEeccCCC
Q 029268 132 LHGRQLKVTVKRTNV 146 (196)
Q Consensus 132 ~~g~~i~v~~~~~~~ 146 (196)
|.|+.|.|.+++++.
T Consensus 90 ~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 90 FQGSKLKVSLARKKP 104 (113)
T ss_dssp ETTEECEEECSSCCC
T ss_pred cCCCEEEEEECCCCC
Confidence 999999999998754
No 47
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=129.08 Aligned_cols=85 Identities=27% Similarity=0.541 Sum_probs=78.7
Q ss_pred CcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeE
Q 029268 61 NREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 138 (196)
Q Consensus 61 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~ 138 (196)
.......++|||+|||..+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|..|| .||+..|.|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3345577899999999999999999999999999999999987 7899999999999999999999 7999999999999
Q ss_pred EEeccCC
Q 029268 139 VTVKRTN 145 (196)
Q Consensus 139 v~~~~~~ 145 (196)
|.+++++
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999764
No 48
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.6e-21 Score=129.53 Aligned_cols=81 Identities=21% Similarity=0.324 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEecc
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~ 143 (196)
....++|||+|||+++|+++|+++|++||. ..|.|+.+++++++|||||+|.+.++|++||.+|+..|+++.|.|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 346689999999999999999999999995 5999999999999999999999999999999889999999999999986
Q ss_pred CC
Q 029268 144 TN 145 (196)
Q Consensus 144 ~~ 145 (196)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 49
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.84 E-value=4.6e-20 Score=126.16 Aligned_cols=76 Identities=22% Similarity=0.468 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
...++|||+|||+++|+++|+++|++||.|..|.|+ ++||||+|.+.++|++|| .||+..|.|+.|.|.+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 356899999999999999999999999999999987 569999999999999999 699999999999999998
Q ss_pred CCCC
Q 029268 144 TNVP 147 (196)
Q Consensus 144 ~~~~ 147 (196)
+...
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7553
No 50
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.7e-20 Score=126.62 Aligned_cols=80 Identities=31% Similarity=0.494 Sum_probs=76.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
+++|||+|||.++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+|| .||+..|+|+.|.|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999997 7999999999999999999999 7999999999999999976
Q ss_pred CC
Q 029268 145 NV 146 (196)
Q Consensus 145 ~~ 146 (196)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 51
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=125.43 Aligned_cols=80 Identities=30% Similarity=0.523 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
....++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3467899999999999999999999999999999999987 6899999999999999999999 7999999999999999
Q ss_pred cc
Q 029268 142 KR 143 (196)
Q Consensus 142 ~~ 143 (196)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 52
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.6e-20 Score=129.88 Aligned_cols=84 Identities=25% Similarity=0.424 Sum_probs=78.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999987 8999999999999999999999 699999999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
+++++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998654
No 53
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=2.3e-21 Score=129.50 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=70.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcC--ceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCG--TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G--~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
.+|||+|||+++++++|+++|++|| .|.+|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998 8999999999999999999999 799999999999999998
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=126.48 Aligned_cols=81 Identities=22% Similarity=0.420 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCcee-EEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeE----e
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVN-RVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ----L 137 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~-~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~----i 137 (196)
...++|||+|||+++++++|+++|++||.|. .|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3678999999999999999999999999999 99999998 8999999999999999999999 69999999999 9
Q ss_pred EEEeccCC
Q 029268 138 KVTVKRTN 145 (196)
Q Consensus 138 ~v~~~~~~ 145 (196)
+|.++++.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999764
No 55
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=130.48 Aligned_cols=83 Identities=17% Similarity=0.391 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
....++|||+|||+++++++|+++|.+||.|..|.|+.++ +++++|||||+|.+.++|++||..++..|+|+.|.|.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 3456899999999999999999999999999999999997 799999999999999999999955999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
.++.
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 8754
No 56
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.4e-20 Score=124.75 Aligned_cols=85 Identities=19% Similarity=0.388 Sum_probs=77.1
Q ss_pred CcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEE
Q 029268 61 NREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 139 (196)
Q Consensus 61 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v 139 (196)
.......++|||+|||+.+++++|+++|.+||.|..|.|+.++ +++++|||||+|.+.++|++||. +++.|+|+.|.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEE
Confidence 3344567899999999999999999999999999999999997 79999999999999999999996 467999999999
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
.++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9998754
No 57
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=134.97 Aligned_cols=85 Identities=14% Similarity=0.295 Sum_probs=78.0
Q ss_pred CcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeE--EEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCC----ee
Q 029268 61 NREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR--VTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNES----EL 132 (196)
Q Consensus 61 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~--~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~----~~ 132 (196)
.......++|||+|||+++|+++|+++|++||.|.. |+|+.++ +++++|||||+|.+. +|.+|| .||+. .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344566789999999999999999999999999976 9999998 899999999999999 999999 79999 99
Q ss_pred CCeEeEEEeccCCC
Q 029268 133 HGRQLKVTVKRTNV 146 (196)
Q Consensus 133 ~g~~i~v~~~~~~~ 146 (196)
+|+.|.|.++++..
T Consensus 96 ~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 DGKTINVEFAKGSK 109 (131)
T ss_dssp GGCCCCCEECCCSC
T ss_pred CCEEEEEEECCCCC
Confidence 99999999998754
No 58
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=2.5e-20 Score=130.47 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=76.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
......++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|+|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999987 7999999999999999999999 79999999999999
Q ss_pred Eecc
Q 029268 140 TVKR 143 (196)
Q Consensus 140 ~~~~ 143 (196)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 59
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=8.2e-20 Score=126.02 Aligned_cols=77 Identities=22% Similarity=0.390 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCC-----eEeE
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG-----RQLK 138 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g-----~~i~ 138 (196)
...++|||+|||+++++++|+++|.+||.|..|.|+.+ |||||+|.+.++|++|| .||+..|.| +.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 35689999999999999999999999999999999865 89999999999999999 699999999 9999
Q ss_pred EEeccCCCC
Q 029268 139 VTVKRTNVP 147 (196)
Q Consensus 139 v~~~~~~~~ 147 (196)
|.++.++.+
T Consensus 87 V~~a~~~~~ 95 (108)
T 1x4c_A 87 VKVDGPRSP 95 (108)
T ss_dssp EEESSCCSC
T ss_pred EEeCCCCCC
Confidence 999987553
No 60
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=4.4e-20 Score=126.94 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
....++|||+|||+.+++++|+++|++||.|..|.|+.+.+++++|||||+|.+.++|++|| .||+..|.|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999 69999999999999998
Q ss_pred c
Q 029268 143 R 143 (196)
Q Consensus 143 ~ 143 (196)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 61
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=124.33 Aligned_cols=81 Identities=22% Similarity=0.515 Sum_probs=74.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCC-ceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQ-PKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~-~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
..++|||+|||.++++++|+++|++||.|..|.|+.+. ++. ++|||||+|.+.++|++|+ .||+..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 56799999999999999999999999999999998887 444 8999999999999999999 69999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7754
No 62
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=127.32 Aligned_cols=85 Identities=26% Similarity=0.417 Sum_probs=78.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 140 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~ 140 (196)
......++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||..++..|+|+.|.|.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPK 90 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 345577899999999999999999999999999999999997 8999999999999999999999449999999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
++.++.
T Consensus 91 ~a~~~~ 96 (105)
T 2dh8_A 91 PCTPRG 96 (105)
T ss_dssp CSCCSS
T ss_pred EccCCC
Confidence 997654
No 63
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.4e-20 Score=124.96 Aligned_cols=81 Identities=27% Similarity=0.516 Sum_probs=74.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC----CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK----FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~----~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 56899999999999999999999999999999998865 3388999999999999999999 699999999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
++++..
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 997654
No 64
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=3.6e-20 Score=130.72 Aligned_cols=84 Identities=52% Similarity=0.983 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEecc
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~ 143 (196)
...++|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||.||+..|+|+.|.|.+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 356899999999999999999999999999999999986 8999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 029268 144 TNVPG 148 (196)
Q Consensus 144 ~~~~~ 148 (196)
+..++
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76543
No 65
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=5.6e-20 Score=123.00 Aligned_cols=81 Identities=27% Similarity=0.497 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
...++|||+|||+++++++|+++|++||.|..|.|+.+ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 36789999999999999999999999999999999874 7889999999999999999999 699999999999999998
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
+..
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 66
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-19 Score=124.94 Aligned_cols=82 Identities=17% Similarity=0.390 Sum_probs=74.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||+++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4456789999999999999999999999999999999654 557999999999999999999 8999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+++..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98643
No 67
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=124.95 Aligned_cols=80 Identities=26% Similarity=0.455 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeE--------EEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeC
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR--------VTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELH 133 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~ 133 (196)
....++|||+|||+++++++|+++|++||.|.. |.|+.++ +++++|||||+|.+.++|++|| .||+..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346689999999999999999999999999999 9999997 7999999999999999999999 69999999
Q ss_pred CeEeEEEecc
Q 029268 134 GRQLKVTVKR 143 (196)
Q Consensus 134 g~~i~v~~~~ 143 (196)
|+.|.|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 68
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-20 Score=129.77 Aligned_cols=83 Identities=24% Similarity=0.315 Sum_probs=76.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCce-eEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTV-NRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||+++|+++|+++|+.||.| ..|.|+.+++++++|||||+|.+.++|++||.+|+..|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 34467899999999999999999999999999 89999999999999999999999999999996699999999999999
Q ss_pred ccCC
Q 029268 142 KRTN 145 (196)
Q Consensus 142 ~~~~ 145 (196)
+.+.
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 69
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=125.72 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
...++|||+|||+++++++|+++|.+||.|..+.++.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 356899999999999999999999999999888777776 8899999999999999999999 89999999999999999
Q ss_pred cCC
Q 029268 143 RTN 145 (196)
Q Consensus 143 ~~~ 145 (196)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 70
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=130.42 Aligned_cols=83 Identities=31% Similarity=0.501 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~ 141 (196)
.+...++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||.||++.|.|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 34457899999999999999999999999999999999988 68999999999999999999999999999999999999
Q ss_pred ccCC
Q 029268 142 KRTN 145 (196)
Q Consensus 142 ~~~~ 145 (196)
+++.
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 9653
No 71
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=121.38 Aligned_cols=82 Identities=21% Similarity=0.374 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEecc
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~ 143 (196)
....++|||+|||+++++++|+++|+.| .|..|.|+.+.+++++|||||+|.+.++|++||.||+..|+|+.|.|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 3467899999999999999999999999 999999999988999999999999999999999999999999999999997
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 72
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=5.6e-21 Score=130.17 Aligned_cols=79 Identities=15% Similarity=0.282 Sum_probs=75.0
Q ss_pred CCceEEEcCCCC------CCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCC-eE
Q 029268 66 DSRSVFVGNVDY------SCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHG-RQ 136 (196)
Q Consensus 66 ~~~~l~v~~Lp~------~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g-~~ 136 (196)
..++|||+|||. .+++++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++|| .||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457999999999 99999999999999999999999998 7999999999999999999999 799999999 99
Q ss_pred eEEEeccC
Q 029268 137 LKVTVKRT 144 (196)
Q Consensus 137 i~v~~~~~ 144 (196)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999865
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=2.7e-20 Score=132.58 Aligned_cols=85 Identities=25% Similarity=0.377 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|+|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987 7899999999999999999999 699999999999999
Q ss_pred eccCCCC
Q 029268 141 VKRTNVP 147 (196)
Q Consensus 141 ~~~~~~~ 147 (196)
++.++.+
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9987543
No 74
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.5e-20 Score=125.92 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCc-eeEEEEe-eCC-CCCceeEEEEEecCHHHHHHHH-hhC--CCeeCCeEeE
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGT-VNRVTIR-TDK-FGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLK 138 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~-i~~~~i~-~~~-~~~~~g~afv~f~~~~~a~~al-~l~--~~~~~g~~i~ 138 (196)
...++|||+|||+++++++|+++|.+||. |..|.|+ .++ +++++|||||+|.+.++|+.|| .|| +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9999998 666 6899999999999999999999 686 5899999999
Q ss_pred EEeccCCC
Q 029268 139 VTVKRTNV 146 (196)
Q Consensus 139 v~~~~~~~ 146 (196)
|.++++..
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99998754
No 75
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.83 E-value=3.6e-21 Score=138.62 Aligned_cols=83 Identities=20% Similarity=0.311 Sum_probs=74.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
.....++|||+|||+++|+++|+++|++|| |..|.|+.+++++++|||||+|.+.++|++||.+|+..|+|+.|.|..+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 334568999999999999999999999999 7799999998899999999999999999999999999999999999998
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7643
No 76
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=5.4e-20 Score=135.11 Aligned_cols=79 Identities=27% Similarity=0.404 Sum_probs=74.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcC--ceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCG--TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G--~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
..++|||+|||+++++++|+++|++|| .|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 467999999999999999999999999 99999999997 8999999999999999999999 7999999999999999
Q ss_pred ccC
Q 029268 142 KRT 144 (196)
Q Consensus 142 ~~~ 144 (196)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 854
No 77
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=1.6e-20 Score=121.02 Aligned_cols=74 Identities=22% Similarity=0.468 Sum_probs=71.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 69 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 69 ~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
+|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|+.+|+..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999988 899999999999999999999999999999999999875
No 78
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.9e-20 Score=122.98 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=73.4
Q ss_pred CCceEEEcCCCCCCCHHHHH----HHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 66 DSRSVFVGNVDYSCTPEEVQ----QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
+.++|||+|||+.+++++|+ ++|++||.|.+|.|+.++.+ +|||||+|.+.++|++|| .||+..|+|+.|+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 56799999999999999999 99999999999999988744 889999999999999999 699999999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
++++..
T Consensus 86 ~a~~~~ 91 (96)
T 2dgx_A 86 LATGAS 91 (96)
T ss_dssp ECCCSS
T ss_pred EcCCCC
Confidence 997643
No 79
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=123.90 Aligned_cols=82 Identities=22% Similarity=0.382 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeE-EEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR-VTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
....++|||+|||+++|+++|+++|.+||.|.. |.|+.+.+++++|||||+|.+.++|++||..|+..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 346789999999999999999999999999987 8888888899999999999999999999955999999999999998
Q ss_pred cCC
Q 029268 143 RTN 145 (196)
Q Consensus 143 ~~~ 145 (196)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 653
No 80
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=122.92 Aligned_cols=81 Identities=28% Similarity=0.536 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||+++++++|+++|++||.| .|+.+.+++++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 44567999999999999999999999999987 5666678899999999999999999999 6999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
++++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98753
No 81
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=9.5e-20 Score=127.74 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCc---eeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEE
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGT---VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 140 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~---i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~ 140 (196)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++.++++|||||+|.+.++|++||.+|++.|+|+.|.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 346789999999999999999999999999 89999999988999999999999999999999999999999999999
Q ss_pred eccC
Q 029268 141 VKRT 144 (196)
Q Consensus 141 ~~~~ 144 (196)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9854
No 82
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=9.7e-20 Score=125.94 Aligned_cols=84 Identities=19% Similarity=0.401 Sum_probs=73.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||...+..|+|+.|.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 44567899999999999999999999999999999999987 79999999999999999999995456999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+.++.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97654
No 83
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=3.7e-20 Score=132.85 Aligned_cols=85 Identities=27% Similarity=0.547 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999987 7999999999999999999999 799999999999999
Q ss_pred eccCCCC
Q 029268 141 VKRTNVP 147 (196)
Q Consensus 141 ~~~~~~~ 147 (196)
++++..+
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987543
No 84
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=2.4e-19 Score=126.60 Aligned_cols=84 Identities=20% Similarity=0.420 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||..+++++|+++|++||.|..|.|+.+++++++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345678999999999999999999999999999999999888999999999999999999999 6999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 97643
No 85
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=1.5e-19 Score=132.62 Aligned_cols=84 Identities=26% Similarity=0.523 Sum_probs=78.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|+.|| .||+..|.|+.|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33467899999999999999999999999999999999997 8999999999999999999999 799999999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
++++..
T Consensus 146 ~a~~~~ 151 (158)
T 2kn4_A 146 MARYGR 151 (158)
T ss_dssp EECCSS
T ss_pred ECCCCC
Confidence 998754
No 86
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=125.80 Aligned_cols=84 Identities=27% Similarity=0.446 Sum_probs=75.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH---HHhhhcCceeEEEEeeCC-C---CCceeEEEEEecCHHHHHHHH-hhCCCeeCC
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQ---QHFQSCGTVNRVTIRTDK-F---GQPKGYAYVEFLQSEAVQEAL-HLNESELHG 134 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~---~~f~~~G~i~~~~i~~~~-~---~~~~g~afv~f~~~~~a~~al-~l~~~~~~g 134 (196)
.....++|||+|||+.+++++|+ ++|++||.|..|.|+.+. + ++++|||||+|.+.++|++|| .||+..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44467899999999999999999 999999999999999876 3 356799999999999999999 799999999
Q ss_pred eEeEEEeccCCC
Q 029268 135 RQLKVTVKRTNV 146 (196)
Q Consensus 135 ~~i~v~~~~~~~ 146 (196)
+.|.|.++.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998754
No 87
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.1e-20 Score=125.66 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhC--CCeeCCeEeEEEe
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLKVTV 141 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~--~~~~~g~~i~v~~ 141 (196)
...++|||+|||+.+|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|+.|| .|+ +..|.|+.|.|.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 35689999999999999999999999999999999875 799999999999999999 575 4789999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
++++.
T Consensus 89 A~~~~ 93 (105)
T 1sjq_A 89 SNHKE 93 (105)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 97654
No 88
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-20 Score=126.94 Aligned_cols=81 Identities=36% Similarity=0.643 Sum_probs=76.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
..++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46799999999999999999999999999999999987 8999999999999999999999 799999999999999997
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 89
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.4e-20 Score=126.51 Aligned_cols=78 Identities=26% Similarity=0.374 Sum_probs=73.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
...+|||+|||+++|+++|+++|+.| .|..|.|+.+++++++|||||+|.+.++|++||.+|+..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 45799999999999999999999999 8999999999889999999999999999999999999999999999988854
No 90
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.6e-20 Score=125.92 Aligned_cols=84 Identities=20% Similarity=0.396 Sum_probs=76.4
Q ss_pred CcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 61 NREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 61 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
.......++|||+|||.++++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|++|+ .||+..|+|+.|.|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34455778999999999999999999999999999999998763 48999999999999999999 69999999999999
Q ss_pred EeccCC
Q 029268 140 TVKRTN 145 (196)
Q Consensus 140 ~~~~~~ 145 (196)
.+++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999764
No 91
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.2e-19 Score=120.98 Aligned_cols=82 Identities=23% Similarity=0.451 Sum_probs=73.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
......++|||+|||+++++++|+++|+.|+ .|.++.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445678999999999999999999999773 67788886 8999999999999999999999 69999999999999
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
.+++++.
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998754
No 92
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.2e-19 Score=123.44 Aligned_cols=84 Identities=18% Similarity=0.353 Sum_probs=77.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCee--------
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL-------- 132 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~-------- 132 (196)
......++|||+|||+++++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++|| .||+..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 3455678999999999999999999999999999999999989999999999999999999999 6999999
Q ss_pred CCeEeEEEeccCC
Q 029268 133 HGRQLKVTVKRTN 145 (196)
Q Consensus 133 ~g~~i~v~~~~~~ 145 (196)
.++.|.|.++.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999753
No 93
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=118.78 Aligned_cols=76 Identities=28% Similarity=0.545 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
....++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++|| .||+..|+|+.|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4467899999999999999999999999999999997 459999999999999999 69999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
++..
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 94
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=5.1e-20 Score=123.88 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
..++|||+|||+++++++|+++|++||.|..+.++.++ +++++|||||+|.+.++|++|| .||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999988888776 7899999999999999999999 699999999999999875
Q ss_pred C
Q 029268 144 T 144 (196)
Q Consensus 144 ~ 144 (196)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 95
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5e-19 Score=118.47 Aligned_cols=77 Identities=29% Similarity=0.557 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||+.+++++|+++|++||.|..|.|+ ++||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34467899999999999999999999999999999997 459999999999999999 7999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
++++.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98654
No 96
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.3e-19 Score=120.19 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hh--CCCeeCCeEeEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL--NESELHGRQLKV 139 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l--~~~~~~g~~i~v 139 (196)
...++++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|+.|+ .| ++..|.|+.|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3346789999999999999999999999999999998865 899999999999999999 55 578899999999
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
.+++.+.
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9998654
No 97
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=9.2e-20 Score=130.79 Aligned_cols=82 Identities=23% Similarity=0.350 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCc---eeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGT---VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 139 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~---i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v 139 (196)
.....++|||+|||+++|+++|+++|++||. |..|.|+.++.++++|||||+|.+.++|++||.+|+..|+|+.|.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 3446789999999999999999999999999 8999999998899999999999999999999999999999999999
Q ss_pred EeccC
Q 029268 140 TVKRT 144 (196)
Q Consensus 140 ~~~~~ 144 (196)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 98853
No 98
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5e-19 Score=118.00 Aligned_cols=75 Identities=25% Similarity=0.487 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
...++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++|| .||+..|.|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 467899999999999999999999999999999997 689999999999999999 799999999999999998
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
++.
T Consensus 79 ~~~ 81 (90)
T 2dnq_A 79 NKS 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 99
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=4.7e-20 Score=125.50 Aligned_cols=82 Identities=27% Similarity=0.510 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC--CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK--FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~--~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||+++++++|+++|++|| |..|.|+.++ +++++|||||+|.+.++|++||.||+..|+|+.|.|.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 344678999999999999999999999999 9999999986 7999999999999999999999999999999999999
Q ss_pred eccCC
Q 029268 141 VKRTN 145 (196)
Q Consensus 141 ~~~~~ 145 (196)
+++++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99764
No 100
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=122.66 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCC--CeeCCeEeEEE
Q 029268 65 VDSRSVFVGNVDY-SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE--SELHGRQLKVT 140 (196)
Q Consensus 65 ~~~~~l~v~~Lp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~--~~~~g~~i~v~ 140 (196)
.++++|||+|||+ .+|+++|+++|++||.|.+|.|+.+ ++||||+|.+.++|..|| .||+ ..|.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3678999999999 9999999999999999999999865 689999999999999999 6775 56999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
+++...
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 998643
No 101
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=121.47 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCe--eCCeEeEEEe
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESE--LHGRQLKVTV 141 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~--~~g~~i~v~~ 141 (196)
.++++|||+|||+.+|+++|+++|++||.|.+|.|++. +|||||+|.+.++|.+|+ .|++.. |.|++|.|.+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 36789999999999999999999999999999999854 799999999999999999 788764 7899999999
Q ss_pred ccCC
Q 029268 142 KRTN 145 (196)
Q Consensus 142 ~~~~ 145 (196)
++++
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 9764
No 102
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-20 Score=122.89 Aligned_cols=78 Identities=22% Similarity=0.334 Sum_probs=72.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
..++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|+.|| .||+..|.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 56899999999999999999999999999999999987 7999999999999999999999 699999999988877654
No 103
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-18 Score=117.98 Aligned_cols=77 Identities=29% Similarity=0.455 Sum_probs=70.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhc--CceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSC--GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
.....++|||+|||+.+++++|+++|++| |.|..|.++ +|||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34467899999999999999999999999 999999875 679999999999999999 69999999999999
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
.++++..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998643
No 104
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=5.1e-20 Score=118.55 Aligned_cols=74 Identities=18% Similarity=0.430 Sum_probs=70.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 69 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 69 ~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
+|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||.+++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999887 799999999999999999999977999999999999875
No 105
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=5.7e-19 Score=126.84 Aligned_cols=81 Identities=27% Similarity=0.509 Sum_probs=75.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
......++|||+|||..+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345578899999999999999999999999999999999986 7999999999999999999999 79999999999999
Q ss_pred Eec
Q 029268 140 TVK 142 (196)
Q Consensus 140 ~~~ 142 (196)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 106
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.8e-19 Score=118.96 Aligned_cols=78 Identities=17% Similarity=0.362 Sum_probs=71.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeC--CeEeEEE
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH--GRQLKVT 140 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~--g~~i~v~ 140 (196)
....++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|| .||+..|. |+.|.|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 345689999999999999999999999999999999764 789999999999999999 69999999 9999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
+++++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998754
No 107
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=2.2e-19 Score=118.12 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=68.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
.+..|||+||++.+|+++|+++|.+||+|.++.|.. ++|||||+|.+.++|++|+ .||+..|.|+.|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 456899999999999999999999999999999976 4999999999999999999 799999999999999884
No 108
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=116.75 Aligned_cols=76 Identities=24% Similarity=0.454 Sum_probs=70.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hh-CCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL-NESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l-~~~~~~g~~i~v~ 140 (196)
.....++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|+ .| ++..+.|+.|.|.
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 3446789999999999999999999999999999999864 799999999999999999 58 9999999999999
Q ss_pred ecc
Q 029268 141 VKR 143 (196)
Q Consensus 141 ~~~ 143 (196)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 109
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.8e-19 Score=119.39 Aligned_cols=79 Identities=27% Similarity=0.449 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 3456789999999999999999999999999999999855 799999999999999999 7999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+++..
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 98754
No 110
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.80 E-value=1.8e-19 Score=125.69 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=65.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeE-----eEE
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ-----LKV 139 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~-----i~v 139 (196)
..++|||+|||+++++++|+++|.+||.|..|.|+.+ |||||+|.+.++|++|| .||+..|+|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4578999999999999999999999999999999765 89999999999999999 69999999988 777
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
..+.++.
T Consensus 89 ~~~~~~~ 95 (115)
T 3beg_B 89 KVDGPRS 95 (115)
T ss_dssp EECC---
T ss_pred ccCCCCC
Confidence 7776543
No 111
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8.1e-20 Score=118.15 Aligned_cols=74 Identities=22% Similarity=0.491 Sum_probs=70.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|+ .++ ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999987 7999999999999999999999 677 9999999999986
No 112
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=127.51 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEe-eCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIR-TDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~-~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
....++|||+|||+++|+++|+++|..||.|..+.++ .+.+++++|||||+|.+.++|++||.+|+..|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 4456899999999999999999999999999885444 445899999999999999999999999999999999999998
Q ss_pred cC
Q 029268 143 RT 144 (196)
Q Consensus 143 ~~ 144 (196)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 113
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=121.26 Aligned_cols=75 Identities=25% Similarity=0.486 Sum_probs=70.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccCCC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNV 146 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~~~ 146 (196)
++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|| .||+..|.|+.|.|.++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999876 6899999999999999999 699999999999999998754
No 114
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.7e-19 Score=120.95 Aligned_cols=79 Identities=20% Similarity=0.421 Sum_probs=73.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 3446789999999999999999999999999999999876 799999999999999999 7999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+++..
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98754
No 115
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=4.8e-20 Score=122.89 Aligned_cols=78 Identities=35% Similarity=0.656 Sum_probs=71.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccCC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 145 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~~ 145 (196)
++|||+|||.++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.+ |..|+ .||+..|+|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999987 7999999999999999 99999 79999999999999999764
Q ss_pred C
Q 029268 146 V 146 (196)
Q Consensus 146 ~ 146 (196)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 116
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.7e-19 Score=120.13 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=69.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCC--CeeCCeEeEEE
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE--SELHGRQLKVT 140 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~--~~~~g~~i~v~ 140 (196)
..++++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+ .|++ ..|.|+.|.|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345689999999999999999999999999999998864 799999999999999999 6754 56999999999
Q ss_pred eccCCC
Q 029268 141 VKRTNV 146 (196)
Q Consensus 141 ~~~~~~ 146 (196)
+++.+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 997643
No 117
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=123.20 Aligned_cols=80 Identities=16% Similarity=0.273 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCC------CHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCe-E
Q 029268 65 VDSRSVFVGNVDYSC------TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGR-Q 136 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~-~ 136 (196)
...++|||+|||+.+ |+++|+++|++||.|..|.|+ ..+++++|||||+|.+.++|++|| .||+..|.|+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346899999999999 789999999999999999988 357899999999999999999999 6999999998 9
Q ss_pred eEEEeccCC
Q 029268 137 LKVTVKRTN 145 (196)
Q Consensus 137 i~v~~~~~~ 145 (196)
|.|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998653
No 118
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=125.18 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCc---eeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEE
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGT---VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 140 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~---i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~ 140 (196)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++.++++|||||+|.+.++|++||.+|+..|+|+.|.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 346789999999999999999999999998 89999999888999999999999999999999999999999999999
Q ss_pred eccC
Q 029268 141 VKRT 144 (196)
Q Consensus 141 ~~~~ 144 (196)
++.+
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 9864
No 119
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=5.7e-21 Score=133.45 Aligned_cols=83 Identities=25% Similarity=0.441 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeE--------EEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeC
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR--------VTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELH 133 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~ 133 (196)
..+.++|||+|||+.+++++|+++|++||.|.. |.|+.++ +++++|||||+|.+.++|++|| .||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999998 8899886 7999999999999999999999 69999999
Q ss_pred CeEeEEEeccCCC
Q 029268 134 GRQLKVTVKRTNV 146 (196)
Q Consensus 134 g~~i~v~~~~~~~ 146 (196)
|+.|.|.+++++.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999998653
No 120
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=126.78 Aligned_cols=79 Identities=24% Similarity=0.293 Sum_probs=73.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCce----eEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEe
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTV----NRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 141 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i----~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~ 141 (196)
...+|||+|||+++|+++|+++|++||.| ..|.|+.+.+++++|||||+|.+.++|++||..|++.|+++.|.|..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR 101 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 56799999999999999999999999975 68999998899999999999999999999996699999999999988
Q ss_pred ccC
Q 029268 142 KRT 144 (196)
Q Consensus 142 ~~~ 144 (196)
+..
T Consensus 102 a~~ 104 (123)
T 2dha_A 102 STA 104 (123)
T ss_dssp ECH
T ss_pred CCH
Confidence 743
No 121
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=3.7e-19 Score=123.33 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
...+|||+|||+++++++|+++|++|| .|..+.|..+ +++|||||+|.+.++|++|| .||+..|+|+.|.|.+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 457999999999999999999999999 8999988633 46899999999999999999 799999999999999997
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
.++
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 643
No 122
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=120.49 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCce----eEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeE
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTV----NRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 138 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i----~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~ 138 (196)
....++|||+|||+++|+++|+++|++||.| ..+.+. +++++|||||+|.+.++|+.|| .||+..|.|+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3467899999999999999999999999998 445444 6888999999999999999999 7999999999999
Q ss_pred EEeccCCC
Q 029268 139 VTVKRTNV 146 (196)
Q Consensus 139 v~~~~~~~ 146 (196)
|.++++..
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 99998754
No 123
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.3e-19 Score=123.37 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhC--CCeeCCeEeEEEe
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLKVTV 141 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~--~~~~~g~~i~v~~ 141 (196)
.++++|||+|||+.+|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|| .++ +..|.|+.|.|.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 35689999999999999999999999999999999876 899999999999999999 676 4689999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
++++.
T Consensus 104 a~~k~ 108 (119)
T 2ad9_A 104 SNHKE 108 (119)
T ss_dssp CSSSS
T ss_pred ccCCC
Confidence 97654
No 124
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.7e-19 Score=120.10 Aligned_cols=76 Identities=18% Similarity=0.456 Sum_probs=69.5
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDY-SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
..+.++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|+.|| .||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34678999999998 99999999999999999999995 789999999999999999 6999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+++..
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 97643
No 125
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=124.59 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQ----QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+. .+++++|||||+|.+.++|..|| .|||..|.|+.|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 356799999999999999876 699999999998775 36788999999999999999999 79999999999999
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
.+++.+.
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9997643
No 126
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=118.06 Aligned_cols=79 Identities=22% Similarity=0.372 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
....++|||+|||+.+++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|| .||+..|+|+.|.|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34578999999999999999999999999997 666643 56899999999999999999 79999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
+++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 127
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=8.4e-19 Score=121.03 Aligned_cols=79 Identities=22% Similarity=0.430 Sum_probs=71.6
Q ss_pred CcCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 61 NREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 61 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
.......++|||+|||+++++++|+++|++||.|..|.|+ +|||||+|.+.++|++|+ .||+..|+|+.|.|
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999998 789999999999999999 79999999999999
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
.++++..
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9998754
No 128
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=117.50 Aligned_cols=72 Identities=18% Similarity=0.356 Sum_probs=66.5
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCe-EeE
Q 029268 67 SRSVFVGNVDYSC------TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGR-QLK 138 (196)
Q Consensus 67 ~~~l~v~~Lp~~~------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~-~i~ 138 (196)
+++|||+|||..+ ++++|+++|++||.|..|.|+ ..+++++|||||+|.+.++|++|| .||+..|.|+ .|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3689999999999 779999999999999999987 347899999999999999999999 7999999999 887
Q ss_pred E
Q 029268 139 V 139 (196)
Q Consensus 139 v 139 (196)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 129
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=8e-20 Score=124.42 Aligned_cols=81 Identities=20% Similarity=0.339 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEecc
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~ 143 (196)
...++|||+|||+++++++|+++|++||.|.. .++.+. +++++|||||+|.+.++|++||.||+..|.|+.|.|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35789999999999999999999999999887 555554 7889999999999999999999999999999999999997
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
++.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 130
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=3.2e-18 Score=118.25 Aligned_cols=76 Identities=24% Similarity=0.445 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYS-CTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
....++|||+|||+. +++++|+++|++||.|..|.| ++|||||+|.+.++|++|| .||+..|+|+.|.|.+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 335689999999999 999999999999999999998 3899999999999999999 8999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
++.+.
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97643
No 131
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.78 E-value=4.2e-19 Score=121.03 Aligned_cols=81 Identities=31% Similarity=0.568 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
...++|||+|||+++++++|+++|++||.|..|.|+.+++++++|||||+|.+.++|++||. ++..|+|+.|.|.++.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 35689999999999999999999999999999999999899999999999999999999999 99999999999999865
Q ss_pred CC
Q 029268 145 NV 146 (196)
Q Consensus 145 ~~ 146 (196)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 132
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=2.1e-18 Score=116.73 Aligned_cols=76 Identities=18% Similarity=0.456 Sum_probs=69.8
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDY-SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||+ ++++++|+++|++||.|..|.|. +|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344678999999998 99999999999999999999984 789999999999999999 699999999999999
Q ss_pred eccCC
Q 029268 141 VKRTN 145 (196)
Q Consensus 141 ~~~~~ 145 (196)
+++++
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99764
No 133
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=115.14 Aligned_cols=77 Identities=27% Similarity=0.367 Sum_probs=68.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEecc
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~ 143 (196)
...++|||+|||+++++++|+++|++||.|..| +.++ +++ ||||+|.+.++|++||.||+..|+|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 356799999999999999999999999999987 4444 454 9999999999999999999999999999999886
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
++.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 134
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=4.7e-19 Score=125.38 Aligned_cols=79 Identities=24% Similarity=0.387 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCcee--EEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVN--RVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
...++|||+|||+++|+++|+++|+.| .|. .|.|+.++.++++|||||+|.+.++|++||.+++..|+|+.|.|..+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 456889999999999999999999999 566 89999988899999999999999999999977889999999999887
Q ss_pred cC
Q 029268 143 RT 144 (196)
Q Consensus 143 ~~ 144 (196)
..
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 135
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=6.4e-19 Score=118.74 Aligned_cols=80 Identities=21% Similarity=0.408 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||+.+++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34467899999999999999999999999988766 346888999999999999999999 6999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
++++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 97643
No 136
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.3e-19 Score=119.62 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
...++|||+|||.++++++|+++|++||.|.+|.|.. ++|||||+|.+.++|..|| .||+..|+|+.|.|.+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3468999999999999999999999999999999983 4899999999999999999 799999999999999987
Q ss_pred C
Q 029268 144 T 144 (196)
Q Consensus 144 ~ 144 (196)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 137
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=116.11 Aligned_cols=76 Identities=21% Similarity=0.413 Sum_probs=68.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCc-eeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCC-CeeCCeEeEEEe
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGT-VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE-SELHGRQLKVTV 141 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~-i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~-~~~~g~~i~v~~ 141 (196)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|| .||+ ..|+|+.|.|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 35689999999999999999999999999 6666653 3799999999999999999 7999 999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
++++.
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98643
No 138
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1.4e-18 Score=130.98 Aligned_cols=82 Identities=20% Similarity=0.439 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEecc
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~ 143 (196)
...++|||+|||+++++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+||..++..|+|+.|.|.++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 456899999999999999999999999999999999997 8999999999999999999999668999999999999998
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
++.
T Consensus 182 ~k~ 184 (196)
T 1l3k_A 182 SKQ 184 (196)
T ss_dssp ---
T ss_pred Chh
Confidence 754
No 139
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.8e-19 Score=121.12 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=69.8
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhC--CCeeCCeEeEE
Q 029268 64 EVDSRSVFVGNVDYS-CTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLKV 139 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~--~~~~~g~~i~v 139 (196)
..++++|||+|||++ +++++|+++|++||.|.+|.|++. +|||||+|.+.++|+.|| .|+ +..|.|+.|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456889999999998 999999999999999999999753 899999999999999999 675 56799999999
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
.+++...
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9997643
No 140
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.3e-18 Score=124.74 Aligned_cols=81 Identities=22% Similarity=0.457 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
.....++|||+|||..+++++|+++|++||.|..+.++.+. ++.++|||||+|.+.++|.+|+ .||+..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34467899999999999999999999999999999999996 8999999999999999999999 699999999999999
Q ss_pred ecc
Q 029268 141 VKR 143 (196)
Q Consensus 141 ~~~ 143 (196)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 141
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=5.9e-19 Score=119.09 Aligned_cols=80 Identities=14% Similarity=0.322 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQ----QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
.++++|||+|||+++++++|+ ++|++||.|..|.|+. +++++|||||+|.+.++|..|+ .||+..|.|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 366899999999999999999 9999999999998863 5677899999999999999999 79999999999999
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
.++++..
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998753
No 142
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=2.8e-18 Score=128.41 Aligned_cols=81 Identities=21% Similarity=0.434 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
...++|||+|||+.+++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++|| .||+..|+|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3468999999999999999999999999999999999888999999999999999999999 699999999999999986
Q ss_pred CC
Q 029268 144 TN 145 (196)
Q Consensus 144 ~~ 145 (196)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 53
No 143
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=2.5e-18 Score=119.65 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=72.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
.+++|||+|||+.+++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+|| .||+..|+|+.|.|.++.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 5679999999999999999999999999999999865 455899999999999999999 6999999999999999975
Q ss_pred C
Q 029268 145 N 145 (196)
Q Consensus 145 ~ 145 (196)
.
T Consensus 85 ~ 85 (115)
T 3lqv_A 85 N 85 (115)
T ss_dssp H
T ss_pred C
Confidence 3
No 144
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=120.52 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=69.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
..++|||+|||+.+++++|+++|++||.|..|.|+. +++||||+|.+.++|+.|| .||+..|.|+.|.|.+++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 467999999999999999999999999999999874 4789999999999999999 7999999999999999965
Q ss_pred C
Q 029268 145 N 145 (196)
Q Consensus 145 ~ 145 (196)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 145
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=125.65 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=71.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEE------EEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeE
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV------TIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 138 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~------~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~ 138 (196)
.+++|||+|||+.+|+++|+++|++||.|..+ .+....+++++|||||+|.+.++|.+|| .||+..|.|+.|.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 56899999999999999999999999998764 2222246889999999999999999999 6999999999999
Q ss_pred EEeccCCCC
Q 029268 139 VTVKRTNVP 147 (196)
Q Consensus 139 v~~~~~~~~ 147 (196)
|.++++..+
T Consensus 124 V~~a~~~~~ 132 (143)
T 3egn_A 124 VQFARSARP 132 (143)
T ss_dssp EEECCCSCC
T ss_pred EEECCCCCC
Confidence 999977543
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=4.1e-18 Score=124.06 Aligned_cols=80 Identities=24% Similarity=0.438 Sum_probs=73.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 62 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 62 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
......++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|..|| .||+..|.|+.|.|.
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34456789999999999999999999999999999999876 4899999999999999999 699999999999999
Q ss_pred eccCC
Q 029268 141 VKRTN 145 (196)
Q Consensus 141 ~~~~~ 145 (196)
+++++
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99764
No 147
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=5.9e-18 Score=130.03 Aligned_cols=79 Identities=23% Similarity=0.439 Sum_probs=74.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
+.++|||+|||+++|+++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|.+|| .+|+..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56799999999999999999999999999999999998 8999999999999999999999 799999999999999886
Q ss_pred C
Q 029268 144 T 144 (196)
Q Consensus 144 ~ 144 (196)
.
T Consensus 94 ~ 94 (213)
T 4f02_A 94 R 94 (213)
T ss_dssp C
T ss_pred c
Confidence 4
No 148
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=111.63 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=69.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|| ++++++|+++|++||.|..|.|. +++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3346789999996 89999999999999999999985 45899999999999999999 8999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
++++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 97754
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.75 E-value=1.1e-17 Score=126.08 Aligned_cols=82 Identities=21% Similarity=0.472 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
....++|||+|||+++|+++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 3467899999999999999999999999999999999997 799999999999999999999977999999999999998
Q ss_pred cCC
Q 029268 143 RTN 145 (196)
Q Consensus 143 ~~~ 145 (196)
...
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 654
No 150
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=1.7e-17 Score=121.71 Aligned_cols=79 Identities=27% Similarity=0.489 Sum_probs=75.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
.++|||+|||+++++++|+++|+.||.|..|.|+.++ +++++|||||+|.+.++|..|+ .||+..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999998 8999999999999999999999 6999999999999999975
Q ss_pred C
Q 029268 145 N 145 (196)
Q Consensus 145 ~ 145 (196)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=6.2e-18 Score=129.87 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
...+|||+|||+.+|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|| .||+..|+|+.|.|.++++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 45789999999999999999999999999999999875 347999999999999999999 7999999999999999976
Q ss_pred C
Q 029268 145 N 145 (196)
Q Consensus 145 ~ 145 (196)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 4
No 152
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=2.1e-17 Score=121.34 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=70.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCC--eEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG--RQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g--~~i~v~~~ 142 (196)
...+|||+||++.+|+++|+++|++||.|.+|.|..+. ++|||||+|.+.++|+.|+ .|||..|.| +.|+|.++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 34679999999999999999999999999999997542 4789999999999999999 799999965 99999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8754
No 153
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=112.14 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEE-EeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVT-IRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~-i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
...++|||+|||+++++++|+++|++||.|..|+ |+.++. .+.|||+|.+.++|..|| .||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3568999999999999999999999999999994 777652 233999999999999999 79999999999999999
Q ss_pred cCC
Q 029268 143 RTN 145 (196)
Q Consensus 143 ~~~ 145 (196)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 865
No 154
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=2.8e-17 Score=125.64 Aligned_cols=82 Identities=23% Similarity=0.466 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|.+|| .||+..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999997 8999999999999999999999 69999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
.++.
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 155
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.6e-17 Score=120.58 Aligned_cols=79 Identities=30% Similarity=0.456 Sum_probs=74.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccCCC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNV 146 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~~~ 146 (196)
++|||+|||.++|+++|+++|++||.|.+|.|+.+++++++|||||+|.+.++|.+|+ .||+..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999999988889999999999999999999 899999999999999997643
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=1.4e-17 Score=122.44 Aligned_cols=81 Identities=27% Similarity=0.409 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
++++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|..|+ .|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999887 7899999999999999999999 699999999999999997
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 157
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=115.95 Aligned_cols=75 Identities=19% Similarity=0.390 Sum_probs=68.3
Q ss_pred CCceEEE--cCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCee-----CCeEe
Q 029268 66 DSRSVFV--GNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL-----HGRQL 137 (196)
Q Consensus 66 ~~~~l~v--~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~-----~g~~i 137 (196)
++++||| +||++++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+ .|||..| .|+.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 5678999 779999999999999999999999988643 799999999999999999 7999998 68999
Q ss_pred EEEeccCC
Q 029268 138 KVTVKRTN 145 (196)
Q Consensus 138 ~v~~~~~~ 145 (196)
.|.+++..
T Consensus 99 ~v~~a~~~ 106 (114)
T 2cq2_A 99 YLNFVEKV 106 (114)
T ss_dssp EEEEESCC
T ss_pred EEEecccC
Confidence 99999754
No 158
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.2e-17 Score=117.08 Aligned_cols=77 Identities=12% Similarity=0.175 Sum_probs=68.6
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecC----H-HH---HHHHHh---hCCCe
Q 029268 68 RSVFVGNV----DYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQ----S-EA---VQEALH---LNESE 131 (196)
Q Consensus 68 ~~l~v~~L----p~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~----~-~~---a~~al~---l~~~~ 131 (196)
..|||+|| |+.+++.+|+++|++||+|.+|.++.|+ |+.++|||||+|.+ + ++ |.+|+. +|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999 89999999999995 3 22 677763 79999
Q ss_pred eCCeEeEEEeccC
Q 029268 132 LHGRQLKVTVKRT 144 (196)
Q Consensus 132 ~~g~~i~v~~~~~ 144 (196)
|+|+.|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998754
No 159
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=3.1e-17 Score=121.23 Aligned_cols=79 Identities=23% Similarity=0.471 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeC---CeEeEE
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH---GRQLKV 139 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~---g~~i~v 139 (196)
....++|||+|||..+|+++|+++|++||.|..|.|+.+.+++++|||||+|.+.++|.+|| .||+..+. +++|.|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 34678999999999999999999999999999999999988999999999999999999999 79998775 499999
Q ss_pred Eec
Q 029268 140 TVK 142 (196)
Q Consensus 140 ~~~ 142 (196)
.+|
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 160
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=1.2e-17 Score=110.93 Aligned_cols=73 Identities=22% Similarity=0.372 Sum_probs=68.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~ 144 (196)
..++|||+|||+.+++++|+++|++| .|..|.|. +++|||||+|.+.++|++|+ .||+..+.|+.|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46789999999999999999999999 99999885 56899999999999999999 6999999999999999865
No 161
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=1.3e-17 Score=111.00 Aligned_cols=78 Identities=24% Similarity=0.337 Sum_probs=62.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEecc
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 143 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~ 143 (196)
.....+|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|+++... ...+.|+.|.|.++.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEEcC
Confidence 346789999999999999999999999999999999875 699999999999998843222 344679999999997
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 162
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=2.4e-17 Score=108.84 Aligned_cols=72 Identities=28% Similarity=0.535 Sum_probs=66.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhc----C-------ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeC
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSC----G-------TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELH 133 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~ 133 (196)
...++|||+|||+++++++|+++|++| | .|.++.+..+ +|||||+|.+.++|++|+.||+..|.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 356899999999999999999999999 8 8999998765 89999999999999999999999999
Q ss_pred CeEeEEEe
Q 029268 134 GRQLKVTV 141 (196)
Q Consensus 134 g~~i~v~~ 141 (196)
|+.|+|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=8.2e-18 Score=123.70 Aligned_cols=80 Identities=21% Similarity=0.473 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
..++|||+|||.++++++|+++|++||.|..+.|+.++ ++.++|||||+|.+.++|.+|+.+++..|+|+.|.|.++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 46789999999999999999999999999999999987 79999999999999999999999999999999999999976
Q ss_pred C
Q 029268 145 N 145 (196)
Q Consensus 145 ~ 145 (196)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 164
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.73 E-value=3.6e-17 Score=124.02 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
...++|||+|||+.+|+++|+++|++||.|..|+|+.+.++.++|||||+|.+.++|++||.+.+..|+|+.|.|.++..
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 34689999999999999999999999999999999998889999999999999999999996556799999999999865
No 165
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=110.57 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=66.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccCC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 145 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~~ 145 (196)
.+++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 5689999999999999999999999999999999865 589999999999999866532 45679999999999765
Q ss_pred C
Q 029268 146 V 146 (196)
Q Consensus 146 ~ 146 (196)
.
T Consensus 79 ~ 79 (88)
T 1wf0_A 79 H 79 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.72 E-value=9.6e-17 Score=121.09 Aligned_cols=82 Identities=22% Similarity=0.426 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
...++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .||+..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999997 8999999999999999999999 69999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
+++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 167
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.72 E-value=4.2e-17 Score=120.40 Aligned_cols=77 Identities=23% Similarity=0.463 Sum_probs=74.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
..++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .||+..|+|+.|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 47899999999999999999999999999999999997 8999999999999999999999 79999999999999987
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=3.7e-17 Score=115.84 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=69.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeE-EEEEecCHHHHHHHH-hhCCCeeCC--eEeEEEe
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGY-AYVEFLQSEAVQEAL-HLNESELHG--RQLKVTV 141 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~-afv~f~~~~~a~~al-~l~~~~~~g--~~i~v~~ 141 (196)
.-..|||+||++.+|+++|+++|++||.|.+|.|... .+|| |||+|.+.++|+.|+ .|||..|.| +.|+|.+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3457889999999999999999999999999988764 2678 999999999999999 799999988 9999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+++..
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98753
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=1.1e-16 Score=117.52 Aligned_cols=79 Identities=28% Similarity=0.504 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCC--eEeEE
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHG--RQLKV 139 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g--~~i~v 139 (196)
....++|||+|||..+++++|+++|++||.|..+.|+.+. +++++|||||+|.+.++|.+|+ .||+..|.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3456899999999999999999999999999999999998 8999999999999999999999 799999987 99999
Q ss_pred Eec
Q 029268 140 TVK 142 (196)
Q Consensus 140 ~~~ 142 (196)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 170
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.9e-16 Score=111.50 Aligned_cols=74 Identities=26% Similarity=0.286 Sum_probs=66.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeE-EEEEecCHHHHHHHH-hhCCCeeCC--eEeEEEecc
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGY-AYVEFLQSEAVQEAL-HLNESELHG--RQLKVTVKR 143 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~-afv~f~~~~~a~~al-~l~~~~~~g--~~i~v~~~~ 143 (196)
..|||+||++.+++++|+++|++||.|.+|.|... .|| |||+|.+.++|..|+ .|||..|.| +.|+|.+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 45789999999999999999999999999999753 386 999999999999999 799999987 699999998
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 753
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=1.5e-16 Score=116.62 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeE--eEEE
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ--LKVT 140 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~--i~v~ 140 (196)
...++|||+|||..+++++|+++|++||.|..+.++.+. ++.++|||||+|.+.++|.+|+ .||+..|.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 456789999999999999999999999999999999987 8999999999999999999999 79999999965 8887
Q ss_pred ec
Q 029268 141 VK 142 (196)
Q Consensus 141 ~~ 142 (196)
+|
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 172
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=111.40 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=65.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-C---CCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-F---GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~---~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
...++|||+|||+++++++|+++|++||.|. +.++.+. + ++++|||||+|.+.++|++|| .|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3568999999999999999999999999999 8887776 4 799999999999999999999 673 367777766
Q ss_pred Eecc
Q 029268 140 TVKR 143 (196)
Q Consensus 140 ~~~~ 143 (196)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 173
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.70 E-value=8.3e-17 Score=123.11 Aligned_cols=76 Identities=30% Similarity=0.417 Sum_probs=70.5
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVD-YSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
++++|||+||| +.+++++|+++|++||.|.+|+|+.++ +|||||+|.+.++|+.|| .||+..|.|+.|.|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 56799999999 899999999999999999999998653 799999999999999999 799999999999999997
Q ss_pred CC
Q 029268 144 TN 145 (196)
Q Consensus 144 ~~ 145 (196)
..
T Consensus 79 ~~ 80 (205)
T 3tyt_A 79 QP 80 (205)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 174
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=1.3e-16 Score=118.28 Aligned_cols=79 Identities=22% Similarity=0.427 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|| .||+..|+|+.|.|.+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 33467899999999999999999999999987665 457889999999999999999999 6999999999999999
Q ss_pred ccCC
Q 029268 142 KRTN 145 (196)
Q Consensus 142 ~~~~ 145 (196)
+.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9764
No 175
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1e-16 Score=122.48 Aligned_cols=79 Identities=30% Similarity=0.486 Sum_probs=71.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
..++|||+|||.++|+++|+++|+.||.|..|.|+.+. +++++|||||+|.+.++|.+|| .||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46799999999999999999999999999999999987 8999999999999999999999 699999999999998875
Q ss_pred C
Q 029268 144 T 144 (196)
Q Consensus 144 ~ 144 (196)
.
T Consensus 107 ~ 107 (216)
T 2qfj_A 107 N 107 (216)
T ss_dssp C
T ss_pred C
Confidence 4
No 176
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=105.57 Aligned_cols=71 Identities=15% Similarity=0.338 Sum_probs=63.5
Q ss_pred Cce-EEEcCCCCCCCHHH----HHHHhhhc-CceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 67 SRS-VFVGNVDYSCTPEE----VQQHFQSC-GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 67 ~~~-l~v~~Lp~~~t~~~----l~~~f~~~-G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
..+ |||+|||+.+++++ |+++|++| |.|.+| + .|+|||+|.+.++|+.|+ .|+|..|.|+.|+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 445 99999999999987 55899999 599988 2 299999999999999999 79999999999999
Q ss_pred EeccCCC
Q 029268 140 TVKRTNV 146 (196)
Q Consensus 140 ~~~~~~~ 146 (196)
.+|+.+.
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 9998755
No 177
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.68 E-value=1.8e-16 Score=126.87 Aligned_cols=82 Identities=17% Similarity=0.396 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhhcCceeEEEEeeCCC--CCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEE
Q 029268 64 EVDSRSVFVGNVDYS-CTPEEVQQHFQSCGTVNRVTIRTDKF--GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 140 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~--~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~ 140 (196)
....++|||+|||+. +++++|+++|++||.|..|.|+.+.. +.++|||||+|.+.++|.+||.||+..|+|+.|.|.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVS 286 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEE
Confidence 446789999999999 99999999999999999999998875 999999999999999999999999999999999999
Q ss_pred eccCC
Q 029268 141 VKRTN 145 (196)
Q Consensus 141 ~~~~~ 145 (196)
++.++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99864
No 178
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1.6e-16 Score=111.70 Aligned_cols=76 Identities=22% Similarity=0.435 Sum_probs=69.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEec
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 142 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~ 142 (196)
....++|||+|| ++++++|+++|++||.|..|.|. +++|||||+|.+.++|++|| .||+..|.|+.|.|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 346789999996 69999999999999999999986 45899999999999999999 79999999999999999
Q ss_pred cCCC
Q 029268 143 RTNV 146 (196)
Q Consensus 143 ~~~~ 146 (196)
++..
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8653
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=1.2e-16 Score=117.42 Aligned_cols=78 Identities=22% Similarity=0.510 Sum_probs=71.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEeccC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 144 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~~~ 144 (196)
++++|||+|||+++|+++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|.+||. +++.++|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 46799999999999999999999999999999999997 79999999999999999999996 25789999999988754
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=7.9e-16 Score=105.49 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHhhhcCceeEEEEeeCC--CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeE
Q 029268 65 VDSRSVFVGNVDY-----SCTPEEVQQHFQSCGTVNRVTIRTDK--FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ 136 (196)
Q Consensus 65 ~~~~~l~v~~Lp~-----~~t~~~l~~~f~~~G~i~~~~i~~~~--~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~ 136 (196)
..+++|+|.||.. ..++++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|.+|+ .|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3678999999963 23689999999999999999999886 3688999999999999999999 79999999999
Q ss_pred eEEEeccC
Q 029268 137 LKVTVKRT 144 (196)
Q Consensus 137 i~v~~~~~ 144 (196)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=5.6e-16 Score=123.40 Aligned_cols=80 Identities=14% Similarity=0.328 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeE
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQ----QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 138 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~ 138 (196)
....++|||+|||+++++++|+ ++|++||.|..|.|+. +++++|||||+|.+.++|.+|| .||+..|.|+.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3467899999999999999976 8999999999999875 6788999999999999999999 8999999999999
Q ss_pred EEeccCC
Q 029268 139 VTVKRTN 145 (196)
Q Consensus 139 v~~~~~~ 145 (196)
|.+++..
T Consensus 84 v~~a~~~ 90 (282)
T 3pgw_A 84 IQYAKTD 90 (282)
T ss_pred EEEeccC
Confidence 9998654
No 182
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=3.9e-16 Score=115.32 Aligned_cols=80 Identities=23% Similarity=0.435 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CC--CceeEEEEEecCHHHHHHHH-hhCCCeeC---CeEeE
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FG--QPKGYAYVEFLQSEAVQEAL-HLNESELH---GRQLK 138 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~--~~~g~afv~f~~~~~a~~al-~l~~~~~~---g~~i~ 138 (196)
+.++|||+|||+++|+++|+++|++||.|.+|.|+.++ ++ +++|||||+|.+.++|++|+ .|++..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999988 44 89999999999999999999 79998775 57888
Q ss_pred EEeccCC
Q 029268 139 VTVKRTN 145 (196)
Q Consensus 139 v~~~~~~ 145 (196)
|.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8887653
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=1e-15 Score=122.02 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCC-CHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYSC-TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~-t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
....++|||+|||..+ ++++|+++|+.||.|..|.|+.+.+++++|||||+|.+.++|.+|+ .||+..|+|+.|.|.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3467899999999995 9999999999999999999999989999999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 029268 142 KRTNV 146 (196)
Q Consensus 142 ~~~~~ 146 (196)
+.+..
T Consensus 261 a~~~~ 265 (284)
T 3smz_A 261 CAPGP 265 (284)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 97654
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=2.4e-16 Score=122.76 Aligned_cols=78 Identities=18% Similarity=0.337 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCee-
Q 029268 64 EVDSRSVFVGNVDYSC---------TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL- 132 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~---------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~- 132 (196)
....++|||+||+..+ ++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|+.|+ .|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4467899999999998 79999999999999999999864 899999999999999999 7999999
Q ss_pred -----------CCeEeEEEeccCCC
Q 029268 133 -----------HGRQLKVTVKRTNV 146 (196)
Q Consensus 133 -----------~g~~i~v~~~~~~~ 146 (196)
.|+.|.|.+|+..+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.64 E-value=1.8e-15 Score=120.51 Aligned_cols=80 Identities=23% Similarity=0.356 Sum_probs=75.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
..++|||+|||+++++++|+++|+.||.|..+.|+.+. ++.++|||||+|.+.++|.+|+ .|++..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999987 8999999999999999999999 899999999999999997
Q ss_pred CC
Q 029268 144 TN 145 (196)
Q Consensus 144 ~~ 145 (196)
+.
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 64
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=1.3e-15 Score=118.14 Aligned_cols=78 Identities=29% Similarity=0.481 Sum_probs=72.5
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 64 EVDSRSVFVGNVDY-SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
...+++|||+|||+ .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34678999999999 99999999999999999999999875 789999999999999999 6999999999999999
Q ss_pred ccCC
Q 029268 142 KRTN 145 (196)
Q Consensus 142 ~~~~ 145 (196)
++..
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9754
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=1.6e-16 Score=117.76 Aligned_cols=83 Identities=19% Similarity=0.376 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEEec
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 142 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~~~ 142 (196)
.....++|||+|||.++++++|+++|..||.|..+.+....+++++|||||+|.+.++|.+||.||+..|.|+.|.|.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 34467899999999999999999999999987663333333688899999999999999999999999999999999998
Q ss_pred cCC
Q 029268 143 RTN 145 (196)
Q Consensus 143 ~~~ 145 (196)
.+.
T Consensus 89 ~~~ 91 (175)
T 1fje_B 89 KGR 91 (175)
T ss_dssp CCS
T ss_pred CCc
Confidence 764
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=3.3e-15 Score=118.90 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeC-CeEeEEEe
Q 029268 64 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTV 141 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~-g~~i~v~~ 141 (196)
....++|||+|||..+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|.+|| .||+..|. |+.|+|.+
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 3457889999999999999999999999999999998664 589999999999999999 79999999 99999999
Q ss_pred cc
Q 029268 142 KR 143 (196)
Q Consensus 142 ~~ 143 (196)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=3.1e-15 Score=118.18 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 63 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
.....++|||+|||+++|+++|+++|+.||.|..|.|..+ +|||||+|.+.++|..|| .||+..|.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 3456789999999999999999999999999999999754 799999999999999999 6999999999999999
Q ss_pred ccC
Q 029268 142 KRT 144 (196)
Q Consensus 142 ~~~ 144 (196)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=4.3e-15 Score=117.37 Aligned_cols=80 Identities=23% Similarity=0.316 Sum_probs=72.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hh-CCCeeC---CeEeEEE
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL-NESELH---GRQLKVT 140 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l-~~~~~~---g~~i~v~ 140 (196)
...+|||+|||..+|+++|+++|+.||.|..|.|+.+.+++++|||||+|.+.++|.+|| .| ++..+. ++.|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 457899999999999999999999999999999999989999999999999999999999 78 555554 8999999
Q ss_pred eccCC
Q 029268 141 VKRTN 145 (196)
Q Consensus 141 ~~~~~ 145 (196)
++...
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 98653
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-14 Score=99.82 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=68.9
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCC
Q 029268 63 EEVDSRSVFVGNVDYSCT-----------PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNES 130 (196)
Q Consensus 63 ~~~~~~~l~v~~Lp~~~t-----------~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~ 130 (196)
....+++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|| .||+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 334678999999955432 5799999999999999966 443 37999999999999999999 79999
Q ss_pred eeCCeEeEEEeccCCC
Q 029268 131 ELHGRQLKVTVKRTNV 146 (196)
Q Consensus 131 ~~~g~~i~v~~~~~~~ 146 (196)
.|+|+.|.|.++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999997643
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=115.07 Aligned_cols=76 Identities=30% Similarity=0.496 Sum_probs=70.8
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDY-SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
.+++|||+|||+ .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|.+|| .||+..|.|+.|.|.+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 457999999999 99999999999999999999998775 789999999999999999 699999999999999997
Q ss_pred CC
Q 029268 144 TN 145 (196)
Q Consensus 144 ~~ 145 (196)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=9.8e-15 Score=113.15 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=70.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeC-CeEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~-g~~i~v~~~ 142 (196)
..++|||+|||..+++++|+++|++|| .|..|.|+.+ .+|||||+|.+.++|.+|| .||+..|. |+.|.|.++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 468999999999999999999999999 9999999643 3789999999999999999 69999999 999999999
Q ss_pred cCC
Q 029268 143 RTN 145 (196)
Q Consensus 143 ~~~ 145 (196)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.60 E-value=5.4e-15 Score=111.71 Aligned_cols=76 Identities=21% Similarity=0.356 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeC-CeEeEEEec
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTVK 142 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~-g~~i~v~~~ 142 (196)
+.++|||+|||..+++++|+++|+.|| .|..|.|+.+. +|||||+|.+.++|.+|+ .||+..|+ |+.|.|.++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 478999999999999999999999999 99999996542 789999999999999999 79999999 999999999
Q ss_pred cCC
Q 029268 143 RTN 145 (196)
Q Consensus 143 ~~~ 145 (196)
+++
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.60 E-value=7.4e-16 Score=105.45 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=63.9
Q ss_pred EcCCCCCCCHHHHHHHh------------hhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeE
Q 029268 72 VGNVDYSCTPEEVQQHF------------QSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 138 (196)
Q Consensus 72 v~~Lp~~~t~~~l~~~f------------~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~ 138 (196)
+.|||+.+++++|++.| ++||.|.+|.|+.+.+++++|||||+|.+.++|.+|+ .|||..|+|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777888888777666 9999999999998888899999999999999999999 7999999999999
Q ss_pred EEec
Q 029268 139 VTVK 142 (196)
Q Consensus 139 v~~~ 142 (196)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=7.5e-15 Score=108.20 Aligned_cols=75 Identities=25% Similarity=0.499 Sum_probs=67.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhc----C-------ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSC----G-------TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHG 134 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g 134 (196)
+.++|||+|||+++|+++|+++|++| | .|..+.+.. ++|||||+|.+.++|.+||.+|+..|.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHHHhCCcEecC
Confidence 46899999999999999999999999 6 677777754 3899999999999999999999999999
Q ss_pred eEeEEEeccCC
Q 029268 135 RQLKVTVKRTN 145 (196)
Q Consensus 135 ~~i~v~~~~~~ 145 (196)
+.|.|.++...
T Consensus 78 ~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 QSLKIRRPHDY 88 (172)
T ss_dssp EECEEECCSSC
T ss_pred ceeeecCCccc
Confidence 99999987654
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=3.6e-15 Score=113.96 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=66.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCce--eEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCe----EeE
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTV--NRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGR----QLK 138 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i--~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~----~i~ 138 (196)
++++|||+|||+++|+++|+++|++||.| ..++|+.+. +..+|||||+|.+.++|.+|| .||+..|.|. ++.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 45789999999999999999999999999 899998775 455799999999999999999 7999999875 566
Q ss_pred EEec
Q 029268 139 VTVK 142 (196)
Q Consensus 139 v~~~ 142 (196)
|.++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 6554
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=5.1e-15 Score=118.37 Aligned_cols=81 Identities=16% Similarity=0.294 Sum_probs=69.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
..++|||+|||+.+++++|+++|+.|| .|..|.|+.+..+.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999998888889999999999999999999 699999999999999987
Q ss_pred CCC
Q 029268 144 TNV 146 (196)
Q Consensus 144 ~~~ 146 (196)
+..
T Consensus 196 ~~~ 198 (292)
T 2ghp_A 196 PLE 198 (292)
T ss_dssp CC-
T ss_pred CCc
Confidence 643
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=1.1e-14 Score=109.67 Aligned_cols=76 Identities=26% Similarity=0.482 Sum_probs=66.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhc----C-------ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCC
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSC----G-------TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHG 134 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g 134 (196)
.+++|||+|||+++|+++|+++|++| | .|..+.+. +++|||||+|.+.++|++||.||+..|.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al~l~g~~~~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHGGGTTEEETT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHHHhcCCEEcC
Confidence 46899999999999999999999999 5 56666553 45899999999999999999999999999
Q ss_pred eEeEEEeccCCC
Q 029268 135 RQLKVTVKRTNV 146 (196)
Q Consensus 135 ~~i~v~~~~~~~ 146 (196)
+.|.|.++....
T Consensus 78 ~~i~v~~~~~~~ 89 (198)
T 2yh0_A 78 QSLKIRRPHDYQ 89 (198)
T ss_dssp EEEEEECCCCCC
T ss_pred ceEEEeCCCCCC
Confidence 999999987643
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=1.5e-14 Score=99.02 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=68.6
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHhhhcCceeEEEEeeCCC---CCceeEEEEEecCHHHHHHHH-hhCCC
Q 029268 65 VDSRSVFVGNV--DYSCT--------PEEVQQHFQSCGTVNRVTIRTDKF---GQPKGYAYVEFLQSEAVQEAL-HLNES 130 (196)
Q Consensus 65 ~~~~~l~v~~L--p~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~---~~~~g~afv~f~~~~~a~~al-~l~~~ 130 (196)
.+++.|.|.|+ |..+. +++|++.|++||.|.+|.|++++. ++++|||||+|.+.++|.+|+ .|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35778999998 33333 368999999999999999998863 368999999999999999999 89999
Q ss_pred eeCCeEeEEEeccC
Q 029268 131 ELHGRQLKVTVKRT 144 (196)
Q Consensus 131 ~~~g~~i~v~~~~~ 144 (196)
.|+|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998743
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=7.6e-14 Score=97.47 Aligned_cols=78 Identities=26% Similarity=0.288 Sum_probs=67.6
Q ss_pred CCceEEEcCCCC--CC---CHHHHHHHhhhcCceeEEEEeeCC-----CCCceeEEEEEecCHHHHHHHH-hhCCCeeCC
Q 029268 66 DSRSVFVGNVDY--SC---TPEEVQQHFQSCGTVNRVTIRTDK-----FGQPKGYAYVEFLQSEAVQEAL-HLNESELHG 134 (196)
Q Consensus 66 ~~~~l~v~~Lp~--~~---t~~~l~~~f~~~G~i~~~~i~~~~-----~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g 134 (196)
++++|+|.|+-. .+ .+++|++.|++||.|.+|.|+.++ +++++||+||+|.+.++|.+|+ .|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999842 12 368999999999999999999875 2467899999999999999999 899999999
Q ss_pred eEeEEEecc
Q 029268 135 RQLKVTVKR 143 (196)
Q Consensus 135 ~~i~v~~~~ 143 (196)
+.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-12 Score=88.95 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEeccCCC
Q 029268 77 YSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNV 146 (196)
Q Consensus 77 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~~~~ 146 (196)
..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|+.|| .++ .+.++.|.|.+++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCC
Confidence 458999999999999999999998 367999999999999999999 544 4679999999997654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=2.2e-13 Score=111.31 Aligned_cols=74 Identities=20% Similarity=0.411 Sum_probs=63.5
Q ss_pred CCCCceEEEcC--CCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeC---Ce--
Q 029268 64 EVDSRSVFVGN--VDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH---GR-- 135 (196)
Q Consensus 64 ~~~~~~l~v~~--Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~---g~-- 135 (196)
+.++.+|||+| |++.+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|| .|||..+- |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 34678999999 688999999999999999999987754 3799999999999999999 79999882 44
Q ss_pred EeEEEec
Q 029268 136 QLKVTVK 142 (196)
Q Consensus 136 ~i~v~~~ 142 (196)
.|.|.++
T Consensus 90 ~ly~~~~ 96 (345)
T 3tht_A 90 TLYLNFV 96 (345)
T ss_dssp ECEEEEC
T ss_pred EEEEEEe
Confidence 5777766
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=4e-12 Score=88.15 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=63.1
Q ss_pred CCceEEEcCCCCCCC----------HHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCC
Q 029268 66 DSRSVFVGNVDYSCT----------PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG 134 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t----------~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g 134 (196)
+++.|.|.|+=..-. +++|++.|++||.|.+|.|.++. ++||+||+|.+.++|.+|+ .|||..|+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 466788888743221 35789999999999999987553 4899999999999999999 799999999
Q ss_pred eEeEEEecc
Q 029268 135 RQLKVTVKR 143 (196)
Q Consensus 135 ~~i~v~~~~ 143 (196)
+.|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999874
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2.7e-11 Score=79.60 Aligned_cols=73 Identities=27% Similarity=0.411 Sum_probs=62.2
Q ss_pred CCceEEEcCCCC----CCCH----HHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEe
Q 029268 66 DSRSVFVGNVDY----SCTP----EEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQL 137 (196)
Q Consensus 66 ~~~~l~v~~Lp~----~~t~----~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i 137 (196)
+..+|+|.-++. +... .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||.|||..++|+.|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 456888877662 3333 5789999999999999999763 899999999999999999999999999
Q ss_pred EEEeccCC
Q 029268 138 KVTVKRTN 145 (196)
Q Consensus 138 ~v~~~~~~ 145 (196)
+|.++.+.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99999864
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.7e-11 Score=85.44 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=64.9
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecC-HHHHHHHH-hh--CCCeeCCeEeE
Q 029268 64 EVDSRSVFVGNVDYS-CTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQ-SEAVQEAL-HL--NESELHGRQLK 138 (196)
Q Consensus 64 ~~~~~~l~v~~Lp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~-~~~a~~al-~l--~~~~~~g~~i~ 138 (196)
-.....|||+||++. ++.++|+++|++||.|..|.+..+. -.|||.|.+ ..+|..|+ .+ ++..|++..+.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 346789999999999 9999999999999999999998874 369999999 78999999 67 47889998888
Q ss_pred EEec
Q 029268 139 VTVK 142 (196)
Q Consensus 139 v~~~ 142 (196)
++..
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8754
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.3e-10 Score=75.52 Aligned_cols=72 Identities=24% Similarity=0.299 Sum_probs=61.4
Q ss_pred CCCceEEEcCCCCC-----CCH----HHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCe
Q 029268 65 VDSRSVFVGNVDYS-----CTP----EEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGR 135 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~-----~t~----~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~ 135 (196)
.+..+|+|.-++.+ +.. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||.||+..++|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 35678999888743 222 4689999999999999999773 9999999999999999999999999
Q ss_pred EeEEEecc
Q 029268 136 QLKVTVKR 143 (196)
Q Consensus 136 ~i~v~~~~ 143 (196)
.|+|.+..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99999864
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=1.6e-09 Score=83.15 Aligned_cols=64 Identities=28% Similarity=0.322 Sum_probs=57.8
Q ss_pred CHHHHHHHhhhcCceeEEEEeeCC-----CCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEecc
Q 029268 80 TPEEVQQHFQSCGTVNRVTIRTDK-----FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 143 (196)
Q Consensus 80 t~~~l~~~f~~~G~i~~~~i~~~~-----~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~~~ 143 (196)
.+++|.+.|++||.|.++.|+.+. +++++|++||+|.+.++|.+|+ .|||..++|+.|.|.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999999999999998543 4589999999999999999999 799999999999999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.82 E-value=3.2e-08 Score=66.69 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=65.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhc-----CceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEE
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSC-----GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 139 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~-----G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v 139 (196)
..++|-|-|||..++...|+.++..+ |.|..|.++.| -+-|+|+|.+...|-+|. .|+|.+|.|++|+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 35678888999999999999999999 99999999988 567999999999999888 89999999999999
Q ss_pred Eec
Q 029268 140 TVK 142 (196)
Q Consensus 140 ~~~ 142 (196)
...
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 754
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=4.6e-05 Score=50.84 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=62.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhh-----cCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCCeEeEEE
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQS-----CGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 140 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~-----~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g~~i~v~ 140 (196)
...+|.|.|||..+.++.|.-+|+. -|.|..+.... +-|+|+|.+.+.|+..|+-..+.|.+..|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 4568999999999999999999986 25888888752 57899999999999999777789999999998
Q ss_pred eccCC
Q 029268 141 VKRTN 145 (196)
Q Consensus 141 ~~~~~ 145 (196)
+.-++
T Consensus 80 P~~~~ 84 (104)
T 2dhx_A 80 PAPPR 84 (104)
T ss_dssp ECCCC
T ss_pred cCCCC
Confidence 86543
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.92 E-value=4.6e-05 Score=51.01 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=61.3
Q ss_pred CceEEEcCCCCCC-CH----HHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEE
Q 029268 67 SRSVFVGNVDYSC-TP----EEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 140 (196)
Q Consensus 67 ~~~l~v~~Lp~~~-t~----~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~ 140 (196)
..+|+|.||+..+ +. +.++.+|..|+++......+. -.-..|.|.+.++|.+|- .||+..+.|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4689999998865 22 567999999999988777643 234689999999999999 899999999999999
Q ss_pred eccCC
Q 029268 141 VKRTN 145 (196)
Q Consensus 141 ~~~~~ 145 (196)
++.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99754
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=0.00049 Score=47.24 Aligned_cols=72 Identities=11% Similarity=0.121 Sum_probs=59.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCC-eEeEEEec
Q 029268 65 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHG-RQLKVTVK 142 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g-~~i~v~~~ 142 (196)
...+-|.|-+.|... ...|-..|++||.|.+.... .....-.|.|.+..+|++||..||..|++ ..|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 346778888999985 57788999999999988762 22578999999999999999999999985 77778774
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.58 E-value=0.00056 Score=44.80 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=54.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-C--CCceeEEEEEecCHHHHHHHH-hhCCCeeC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-F--GQPKGYAYVEFLQSEAVQEAL-HLNESELH 133 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~--~~~~g~afv~f~~~~~a~~al-~l~~~~~~ 133 (196)
.+|.|++||+++|++++.+.++....+....++... + ...-.-|||.|.+.+++.... .++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 478999999999999999999998887777776654 2 233567999999999988888 79999874
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.33 E-value=0.00094 Score=44.02 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=44.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hh
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL 127 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l 127 (196)
..+.++| ++|..+...||.++|+.||.| .|..+.|. .|||.|.+++.|..|+ .+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhc
Confidence 3456666 999999999999999999954 46666553 7999999999999999 45
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.19 E-value=0.00066 Score=44.88 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhC
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN 128 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~ 128 (196)
+.++| ++|..+...+|.++|+.|| -..|..+.|. .|||.|.+++.|..|+ .+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999 3456666653 7999999999999999 453
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.90 E-value=0.00061 Score=57.50 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=43.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhh
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHL 127 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l 127 (196)
..+.|||. .|..+++.+|.++|++||+|.++.+-.+. .-||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 34689997 79999999999999999999999887543 47999999999999988743
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.77 E-value=0.0044 Score=43.11 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=55.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeE-EEEeeC--------C-CC-----CceeEEEEEecCHHHHHHHHhhCCCee
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNR-VTIRTD--------K-FG-----QPKGYAYVEFLQSEAVQEALHLNESEL 132 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~-~~i~~~--------~-~~-----~~~g~afv~f~~~~~a~~al~l~~~~~ 132 (196)
.-|.|-+.|.+.+ ..|-+.|++||.|.+ +.+..+ + .. ...+...|+|.+..+|.+||..||..|
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 4567778888754 557789999999865 221110 0 01 135677999999999999999999999
Q ss_pred CCeEeEEEecc
Q 029268 133 HGRQLKVTVKR 143 (196)
Q Consensus 133 ~g~~i~v~~~~ 143 (196)
+|.-|-|.+..
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988888763
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.56 E-value=0.0057 Score=40.35 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=46.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-CC--CceeEEEEEecCHHHHHHHH-hhCCCeeC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FG--QPKGYAYVEFLQSEAVQEAL-HLNESELH 133 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~--~~~g~afv~f~~~~~a~~al-~l~~~~~~ 133 (196)
+-+|.|++||+++|++++.+.+...=.+.....+... +. ..-.-|||.|.+.+++.... .++|+.+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4579999999999999877777654333222222222 21 12345899999999988888 79998874
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.64 E-value=0.011 Score=42.17 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=26.1
Q ss_pred EEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCC
Q 029268 96 RVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE 129 (196)
Q Consensus 96 ~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~ 129 (196)
.+.|..+.. +++|||||+|.+.++|++|+ .+++
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcc
Confidence 345555543 68999999999999999999 6664
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.68 E-value=0.01 Score=41.94 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=35.2
Q ss_pred CCceeEEEEEecCHHHHHHHH-hh-CCCeeCCeEeEEEeccC
Q 029268 105 GQPKGYAYVEFLQSEAVQEAL-HL-NESELHGRQLKVTVKRT 144 (196)
Q Consensus 105 ~~~~g~afv~f~~~~~a~~al-~l-~~~~~~g~~i~v~~~~~ 144 (196)
.+.+|+++|+|.+.++|++|+ .+ |+..++| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 466899999999999999999 78 9999999 999998754
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.74 E-value=1 Score=38.39 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=42.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhC
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN 128 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~ 128 (196)
...++|+ +|..+...+|.+.|+.||.| .|..+.+ ..|||.|.+.+.|..++ .++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 4566666 88889999999999999953 5555433 47999999999999999 564
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=88.46 E-value=0.2 Score=33.51 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCCceEEEcCCCCCCCHHH
Q 029268 65 VDSRSVFVGNVDYSCTPEE 83 (196)
Q Consensus 65 ~~~~~l~v~~Lp~~~t~~~ 83 (196)
....+|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456799999999998763
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=79.43 E-value=6.8 Score=23.72 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=41.8
Q ss_pred eEEEc-CCCCCCCHHHHHHHhhhcC-----ceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-hhCCCeeCCeEeEEEe
Q 029268 69 SVFVG-NVDYSCTPEEVQQHFQSCG-----TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 141 (196)
Q Consensus 69 ~l~v~-~Lp~~~t~~~l~~~f~~~G-----~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al-~l~~~~~~g~~i~v~~ 141 (196)
++||. +--..++..+|..++..-+ .|-.|.|. ..|.||+.... .+..++ .|++..+.|+.+.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEE
Confidence 45553 2223467778888887544 35567775 34889998764 467777 7999999999999987
Q ss_pred cc
Q 029268 142 KR 143 (196)
Q Consensus 142 ~~ 143 (196)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=59.47 E-value=32 Score=22.00 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=43.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH
Q 029268 66 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL 125 (196)
Q Consensus 66 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al 125 (196)
..+.|-|-|+|..+-..++--...-.|---.|..+ .|-|.|.|.+.++..-||
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlai 63 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAI 63 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHH
Confidence 45778888999999988887777777765666665 578999999999988888
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=53.39 E-value=60 Score=23.32 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=38.1
Q ss_pred eEEEcCCCC---------CCCHHHHHHHh--hhcCceeEEEEeeCCCCCceeEEEEEec-CHHHHHHHHhhC
Q 029268 69 SVFVGNVDY---------SCTPEEVQQHF--QSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQEALHLN 128 (196)
Q Consensus 69 ~l~v~~Lp~---------~~t~~~l~~~f--~~~G~i~~~~i~~~~~~~~~g~afv~f~-~~~~a~~al~l~ 128 (196)
++.|-|+|- ..+...|++.| ..|.++. |..+.++.| ..|+|+|.|. +-.-...|+.|.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHHHHH
Confidence 455666665 24457899977 8998865 444444444 5789999997 444556666554
No 226
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=43.84 E-value=34 Score=27.97 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=39.0
Q ss_pred EEEcCCCCCC----CHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeCC
Q 029268 70 VFVGNVDYSC----TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHG 134 (196)
Q Consensus 70 l~v~~Lp~~~----t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~g 134 (196)
-+||||+.-. ....+.++..+||+|..+.+. +.-+|...+.+.++.++.-+...+.+
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~~k~il~~~~~~f~~ 77 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG--------TKTTVIVGHHQLAKEVLIKKGKDFSG 77 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET--------TEEEEEECSHHHHHHHHTTTTTTTBB
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC--------CCCEEEECCHHHHHHHHHhCcHhhCC
Confidence 4688876532 135677888899999888773 24567778999998888444444443
No 227
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=36.99 E-value=35 Score=26.21 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=24.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEE
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTI 99 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i 99 (196)
.-+.|+|||+.++...|..++.. ..+..+.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 46789999999999999999987 55554443
No 228
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=34.25 E-value=23 Score=28.68 Aligned_cols=55 Identities=24% Similarity=0.123 Sum_probs=34.9
Q ss_pred EEcCCCCC---CCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHhhCCCeeC
Q 029268 71 FVGNVDYS---CTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELH 133 (196)
Q Consensus 71 ~v~~Lp~~---~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~l~~~~~~ 133 (196)
+|||+..- -....+.++..+||+|..+.+. +.-+|...+.+.++.++.-++..+.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~i~~vl~~~~~~f~ 77 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA--------WTPVVVLNGLAAVREALVTHGEDTA 77 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET--------TEEEEEEEHHHHHHHHHTTTGGGSC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC--------CeeEEEECCHHHHHHHHHhCChhhc
Confidence 46776532 2235577888899999888763 2235666788887777644444443
No 229
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=32.97 E-value=20 Score=27.78 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=25.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEe
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIR 100 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~ 100 (196)
..+.|+|||+.++...|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999865555555443
No 230
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=31.93 E-value=42 Score=29.34 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHhh----hcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHH
Q 029268 74 NVDYSCTPEEVQQHFQ----SCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL 125 (196)
Q Consensus 74 ~Lp~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al 125 (196)
..+.+.+--+|..+|- .+|.|+++.|..-+-.....++++.|.+.+++..++
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av 405 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACL 405 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhH
Confidence 3455555557888883 678899888866554555778899999999998888
No 231
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=31.50 E-value=5.7 Score=27.89 Aligned_cols=27 Identities=11% Similarity=0.393 Sum_probs=15.1
Q ss_pred HHHHHhhhcCceeEEEEeeCCCCCceeEEEEEec
Q 029268 83 EVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL 116 (196)
Q Consensus 83 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~ 116 (196)
++.++|...|.|..... .+||+||+..
T Consensus 3 ~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWFNV-------RMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEEET-------TTTEEEEEEE
T ss_pred cccccccceeEEEEEEC-------CCCeeEEeeC
Confidence 44455666666554322 2889999865
No 232
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=30.64 E-value=79 Score=18.07 Aligned_cols=54 Identities=4% Similarity=0.004 Sum_probs=40.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCCceeEEEEEecCHHHHHHHHh
Q 029268 67 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH 126 (196)
Q Consensus 67 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~g~afv~f~~~~~a~~al~ 126 (196)
..++.|.++.-.--...|...+.. -.|..+.+... .+-+.|.|.+.+....+|.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~ 59 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVE 59 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHH
Confidence 356888898887778899999999 77888877543 5677888875556666664
No 233
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=27.88 E-value=61 Score=15.87 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029268 18 LDDMKIRLKEMEEEATA 34 (196)
Q Consensus 18 ~~~~~~~~~~~e~~~~~ 34 (196)
+.++++.+..+..+.++
T Consensus 4 laaikqelaaikkelaa 20 (34)
T 3r4h_A 4 LAAIKQELAAIKKELAA 20 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 234
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=26.61 E-value=1.4e+02 Score=19.56 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=28.0
Q ss_pred CCCHHHHHHHhhh-cCc---eeEEEEeeCC--CCCceeEEEEEecCHHHHHHH
Q 029268 78 SCTPEEVQQHFQS-CGT---VNRVTIRTDK--FGQPKGYAYVEFLQSEAVQEA 124 (196)
Q Consensus 78 ~~t~~~l~~~f~~-~G~---i~~~~i~~~~--~~~~~g~afv~f~~~~~a~~a 124 (196)
.++..+|++.+++ |+. +.-|.=.... .+++.|||.| |.|.+.|.+.
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 5678888888874 442 2233222233 4677888866 7787777653
No 235
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=26.10 E-value=1.2e+02 Score=19.59 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHhhh-cCc---eeEE-EEeeCC-CCCceeEEEEEecCHHHHHH
Q 029268 77 YSCTPEEVQQHFQS-CGT---VNRV-TIRTDK-FGQPKGYAYVEFLQSEAVQE 123 (196)
Q Consensus 77 ~~~t~~~l~~~f~~-~G~---i~~~-~i~~~~-~~~~~g~afv~f~~~~~a~~ 123 (196)
..++..+|++.+++ |+. +.-| .|.+.. .+++.|||.| |.|.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45788888888874 342 2222 223333 4677888876 777777654
No 236
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=25.48 E-value=54 Score=24.76 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=22.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEE
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRV 97 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~ 97 (196)
..+.|+|||+.++...|..++...-.+..+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 357899999999998888888754334333
No 237
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=25.02 E-value=48 Score=24.94 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=24.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhcCceeEEEE
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTI 99 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i 99 (196)
..+.|+|||+.++...|..++.....+..+.+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~ 127 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVF 127 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEE
Confidence 34789999999999999999886544444433
No 238
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=24.60 E-value=1.5e+02 Score=19.19 Aligned_cols=48 Identities=15% Similarity=0.346 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHhhh-cCc---eeEE-EEeeCC-CCCceeEEEEEecCHHHHHHHH
Q 029268 77 YSCTPEEVQQHFQS-CGT---VNRV-TIRTDK-FGQPKGYAYVEFLQSEAVQEAL 125 (196)
Q Consensus 77 ~~~t~~~l~~~f~~-~G~---i~~~-~i~~~~-~~~~~g~afv~f~~~~~a~~al 125 (196)
..++..+|++.+++ |+. +.-| .|.+.. .+++.|||.| |.|.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 45778888888875 342 2222 222233 4677888866 77877766554
No 239
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.42 E-value=1.2e+02 Score=19.06 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.0
Q ss_pred ceeEEEEeeCC-CCCceeEEEEEecC
Q 029268 93 TVNRVTIRTDK-FGQPKGYAYVEFLQ 117 (196)
Q Consensus 93 ~i~~~~i~~~~-~~~~~g~afv~f~~ 117 (196)
.|+.|+|..-. .++.++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788886655 68999999999975
No 240
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=23.82 E-value=25 Score=26.79 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=24.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCceeEEEEe
Q 029268 70 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIR 100 (196)
Q Consensus 70 l~v~~Lp~~~t~~~l~~~f~~~G~i~~~~i~ 100 (196)
..|+|||+.++...|..++.....+..+.++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 4799999999999999999876665554443
No 241
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=23.25 E-value=46 Score=21.50 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=24.6
Q ss_pred CCCHHHHHHHhhh-cCceeEEEEeeC-C----CCCceeEEEEEecCHHHHHH
Q 029268 78 SCTPEEVQQHFQS-CGTVNRVTIRTD-K----FGQPKGYAYVEFLQSEAVQE 123 (196)
Q Consensus 78 ~~t~~~l~~~f~~-~G~i~~~~i~~~-~----~~~~~g~afv~f~~~~~a~~ 123 (196)
.++..+|++.+++ |+.-.++.++.. + .+++.|||.| |.|.+.|.+
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5677888887764 332122222221 2 2567777766 666555443
No 242
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.24 E-value=17 Score=29.27 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=6.3
Q ss_pred CCCHHHHHHHhh
Q 029268 78 SCTPEEVQQHFQ 89 (196)
Q Consensus 78 ~~t~~~l~~~f~ 89 (196)
.+++++|++...
T Consensus 228 ~vt~~~l~~i~~ 239 (358)
T 2pk2_A 228 TVTLELLDELTH 239 (358)
T ss_dssp SCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 345666555443
No 243
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=22.87 E-value=50 Score=17.61 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=6.9
Q ss_pred cchHHHHHHHHHHH
Q 029268 13 NKQVELDDMKIRLK 26 (196)
Q Consensus 13 ~~~~~~~~~~~~~~ 26 (196)
+.++++++|..++.
T Consensus 23 deEedi~~MqsRLa 36 (40)
T 2xze_Q 23 EEEEALEAMQSRLA 36 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 33345555555554
No 244
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=22.76 E-value=68 Score=25.75 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhh
Q 029268 68 RSVFVGNVDYSCTPEEVQQHFQS 90 (196)
Q Consensus 68 ~~l~v~~Lp~~~t~~~l~~~f~~ 90 (196)
....|+|||++++..-|..+|..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999988888874
No 245
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=21.92 E-value=1.4e+02 Score=19.34 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=20.1
Q ss_pred ceeEEEEeeCC-CCCceeEEEEEecC
Q 029268 93 TVNRVTIRTDK-FGQPKGYAYVEFLQ 117 (196)
Q Consensus 93 ~i~~~~i~~~~-~~~~~g~afv~f~~ 117 (196)
.|+.|+|..-. .++.++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788887655 68999999999975
No 246
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=21.35 E-value=33 Score=16.82 Aligned_cols=7 Identities=43% Similarity=1.028 Sum_probs=3.3
Q ss_pred CCCCCCC
Q 029268 189 PMRYSPY 195 (196)
Q Consensus 189 ~~~~~py 195 (196)
+.+|.||
T Consensus 18 gnrfepY 24 (30)
T 2ot8_C 18 GNRFEPY 24 (30)
T ss_pred Ccccccc
Confidence 3445554
No 247
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.83 E-value=1.5e+02 Score=19.34 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=19.8
Q ss_pred ceeEEEEeeCC-CCCceeEEEEEecC
Q 029268 93 TVNRVTIRTDK-FGQPKGYAYVEFLQ 117 (196)
Q Consensus 93 ~i~~~~i~~~~-~~~~~g~afv~f~~ 117 (196)
.|+.|+|..-. .++.++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46778876655 68999999999975
Done!