Query 029269
Match_columns 196
No_of_seqs 140 out of 288
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:35:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_R 60S ribosomal protein L 100.0 2.3E-87 7.8E-92 562.2 15.9 187 1-187 1-187 (189)
2 4a1a_O RPL19, 60S ribosomal pr 100.0 2.4E-85 8.1E-90 548.3 14.7 178 1-178 1-178 (185)
3 2zkr_p 60S ribosomal protein L 100.0 5.6E-85 1.9E-89 550.1 15.4 193 1-193 1-193 (196)
4 3iz5_T 60S ribosomal protein L 100.0 2.5E-84 8.4E-89 549.6 18.4 178 1-178 1-178 (209)
5 4a17_O RPL19, 60S ribosomal pr 100.0 8.9E-81 3E-85 520.5 17.1 165 1-165 1-165 (185)
6 1vq8_P 50S ribosomal protein L 100.0 4.2E-76 1.4E-80 479.2 13.8 149 1-149 1-149 (149)
7 3j21_Q PFEL19, 50S ribosomal p 100.0 1.2E-75 4E-80 477.0 14.4 147 1-147 1-147 (150)
8 3jyw_P 60S ribosomal protein L 100.0 2E-71 7E-76 461.9 10.0 156 2-157 1-156 (176)
9 1fme_A FSD-EY peptide; beta-BE 68.9 1.7 5.8E-05 25.8 1.0 21 126-146 6-26 (28)
10 2v7f_A RPS19, RPS19E SSU ribos 21.7 46 0.0016 26.1 2.2 33 25-57 86-118 (150)
11 1ard_A Yeast transcription fac 21.4 36 0.0012 16.7 1.1 17 129-145 9-25 (29)
12 2m0f_A Zinc finger and BTB dom 20.5 40 0.0014 16.5 1.1 17 129-145 9-25 (29)
13 1va1_A Transcription factor SP 20.1 44 0.0015 18.2 1.3 18 128-145 16-33 (37)
No 1
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P
Probab=100.00 E-value=2.3e-87 Score=562.22 Aligned_cols=187 Identities=57% Similarity=0.927 Sum_probs=184.2
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (196)
Q Consensus 1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk 80 (196)
|++|++||||||+||+||+++|||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (189)
T 3u5e_R 1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGK 80 (189)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGCEECTTCHHHHHTCCSHHHHHHHHTTTSEECCCCCCCCTHHHHHHHHHHHTTCSCSGGG
T ss_pred CcchHHHHHHHHHHHCCCCCeeecCHHHHHHHHhhhhHHHHHHHHHCCCeEecCccCCChhHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029269 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (196)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQae 160 (196)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++|||++++|++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (189)
T 3u5e_R 81 RKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAE 160 (189)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHH
Q 029269 161 AKRAKNKASRERKIARREERLAQVRAL 187 (196)
Q Consensus 161 A~r~k~k~~r~rr~~~~~~k~~~~~~~ 187 (196)
|+++|++++++++++++++++++|++.
T Consensus 161 a~r~k~k~~~~r~~~~~~~k~~~~~~~ 187 (189)
T 3u5e_R 161 ARRLKNRAARDRRAQRVAEKRDALLKE 187 (189)
T ss_dssp HHHHHHHHHHHHHHHTTTSSTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988864
No 2
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O
Probab=100.00 E-value=2.4e-85 Score=548.33 Aligned_cols=178 Identities=67% Similarity=1.056 Sum_probs=145.8
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (196)
Q Consensus 1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk 80 (196)
|++|++||||||+||+||+++|||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a1a_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CcchHHHHHHHHHHhCCCCcccccChHHHHHHHhcccHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029269 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (196)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQae 160 (196)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (185)
T 4a1a_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQE 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTC-------------
T ss_pred cccchhccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHHH
Q 029269 161 AKRAKNKASRERKIARRE 178 (196)
Q Consensus 161 A~r~k~k~~r~rr~~~~~ 178 (196)
|+++|++++++++++++|
T Consensus 161 a~r~k~k~~r~~~~~~~~ 178 (185)
T 4a1a_O 161 ARRAKNTASRAKRNEKAQ 178 (185)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 999999999999998876
No 3
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.6e-85 Score=550.06 Aligned_cols=193 Identities=64% Similarity=1.019 Sum_probs=157.1
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (196)
Q Consensus 1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk 80 (196)
|++|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+||||
T Consensus 1 M~~L~~QKRLAA~VL~cG~~rVWlDP~~~~eI~~A~sR~~IR~LIkdG~I~~Kp~~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (196)
T 2zkr_p 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGK 80 (196)
T ss_dssp --------CHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCC-CCHHHHHHHHHHHHTCCCC---
T ss_pred CcchHHHHHHHHHHHCCCcCceecChHHHHHHHHhhhHHHHHHHHHCCCeEecCcccccHHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029269 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (196)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQae 160 (196)
|+||+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++|||+.++|++++++|+||+|
T Consensus 81 RKGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~LY~kaKGn~Fknk~~L~e~I~~~Kae~~r~k~l~~q~e 160 (196)
T 2zkr_p 81 RKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160 (196)
T ss_dssp ---CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHH
T ss_pred CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029269 161 AKRAKNKASRERKIARREERLAQVRALLAYTIE 193 (196)
Q Consensus 161 A~r~k~k~~r~rr~~~~~~k~~~~~~~~~~~~~ 193 (196)
|+++++++++++++++++++++++++..+.+.+
T Consensus 161 a~r~k~k~~r~~r~~~~~~~~~~~~~~~~~~~~ 193 (196)
T 2zkr_p 161 ARRSKTKEARKRREERLQAKKEEIIKTLSKEEE 193 (196)
T ss_dssp HHHTTTHHHHHHHHHHHHHHTTHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999999999999999999999999998877654
No 4
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_T
Probab=100.00 E-value=2.5e-84 Score=549.62 Aligned_cols=178 Identities=93% Similarity=1.346 Sum_probs=176.3
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (196)
Q Consensus 1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk 80 (196)
|++|++||||||+||+||+++|||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~AnsRq~IRkLIkdGlIi~Kpv~~hSR~R~r~~~~ar~kGRh~G~Gk 80 (209)
T 3iz5_T 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGK 80 (209)
T ss_dssp CCCCHHHHHHHHHHHTSCTTTEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCHHHHHHHHHTTSSCCSCSSSS
T ss_pred CcchHHHHHHHHHHhCCCCCeeccChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCCChHHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029269 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (196)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQae 160 (196)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++|||+.|+|++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~KaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dqae 160 (209)
T 3iz5_T 81 RRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (209)
T ss_dssp SCSCTTTTCCSHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHTTCCCSSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHHH
Q 029269 161 AKRAKNKASRERKIARRE 178 (196)
Q Consensus 161 A~r~k~k~~r~rr~~~~~ 178 (196)
|+|+|+++++++++++.+
T Consensus 161 Arr~k~k~~r~rr~~r~~ 178 (209)
T 3iz5_T 161 AKRAKSKASRERKIARRE 178 (209)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999944
No 5
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}
Probab=100.00 E-value=8.9e-81 Score=520.52 Aligned_cols=165 Identities=65% Similarity=1.019 Sum_probs=161.9
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (196)
Q Consensus 1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk 80 (196)
|++|++||||||+||+||++||||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kpv~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a17_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CcchHHHHHHHHHHhCCCCCeeecChHHHHHHHhcccHHHHHHHHHCCCEEeCCcccCChHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029269 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (196)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~dQae 160 (196)
|+||+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dqae 160 (185)
T 4a17_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKAXXXXXXXXXXXXX 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 029269 161 AKRAK 165 (196)
Q Consensus 161 A~r~k 165 (196)
|.-.-
T Consensus 161 a~~~~ 165 (185)
T 4a17_O 161 XXXXX 165 (185)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 97543
No 6
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Probab=100.00 E-value=4.2e-76 Score=479.20 Aligned_cols=149 Identities=35% Similarity=0.578 Sum_probs=142.8
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (196)
Q Consensus 1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk 80 (196)
|++|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+||||
T Consensus 1 M~~l~~QKRLAA~vL~cG~~rVw~DP~~~~eI~~A~sR~~IR~LIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (149)
T 1vq8_P 1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGS 80 (149)
T ss_dssp -CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHHCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGG
T ss_pred CcchHHHHHHHHHHHCCCcCceecCHHHHHHHHhcccHHHHHHHHHCCCeEeccccCccHHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHH
Q 029269 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK 149 (196)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~ 149 (196)
|+||+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|+
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~~~I~~~~~~~ 149 (149)
T 1vq8_P 81 RKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA 149 (149)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTTCCSSHHHHHHHHTC-----
T ss_pred CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999874
No 7
>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-75 Score=477.05 Aligned_cols=147 Identities=43% Similarity=0.811 Sum_probs=145.3
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029269 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (196)
Q Consensus 1 M~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~Gk 80 (196)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus 1 m~~l~~QKRLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (150)
T 3j21_Q 1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS 80 (150)
T ss_dssp CCCCHHHHHHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSTTT
T ss_pred CcchHHHHHHHHHHHcCCcceeecChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCcCHHHHHHHHHHHHhcccCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhh
Q 029269 81 RKGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKA 147 (196)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~ 147 (196)
|+||+|||||+|+.||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+|||++...
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~i~~~~~ 147 (150)
T 3j21_Q 81 RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHGL 147 (150)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCSCHHHHHHHHHHHST
T ss_pred ccCcccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998754
No 8
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=2e-71 Score=461.90 Aligned_cols=156 Identities=58% Similarity=0.961 Sum_probs=152.4
Q ss_pred CcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCc
Q 029269 2 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR 81 (196)
Q Consensus 2 ~~l~~QKRLAA~vL~cGk~rVWlDPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~~SR~R~r~~~~~k~kGR~~G~GkR 81 (196)
++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|||
T Consensus 1 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGr~~G~GkR 80 (176)
T 3jyw_P 1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKR 80 (176)
T ss_dssp CCCHHHHHHHHHHHTCCTTTEECCSSCCHHHHHCCSHHHHHHHHHHTCSEECCCCCCCSHHHHHHHHHHTTTSSCSSSSC
T ss_pred CCcHHHHHHHHHHhCCCCCccccChHHHHHHHhhccHHHHHHHHHCCCEEeCCCcCCChHHHHHHHHHHhcCCCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhH
Q 029269 82 KGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSD 157 (196)
Q Consensus 82 kGt~~AR~p~K~~Wm~riR~lRr~Lr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~I~k~k~e~~r~k~L~d 157 (196)
+||+|||||+|++||++||+||++|++|||+|+||+|+||.||+++|||+|+|+++|++|||+.++|+++...-+.
T Consensus 81 kGt~~AR~p~K~~Wm~riR~lRrlLr~yRe~gkIDk~lYr~LY~kaKGn~Fknk~~L~e~I~k~ka~~~~~~~~~~ 156 (176)
T 3jyw_P 81 KGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAA 156 (176)
T ss_dssp SSCTTCSSCHHHHHHHHHHHHHHHHSTTTTTTSSCSTTTTTTGGGTTTTCCCSTTHHHHCTTTTGGGGHHHHHHGG
T ss_pred cccccccCChHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHHhcCCEechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765544
No 9
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=68.91 E-value=1.7 Score=25.85 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=18.7
Q ss_pred hhcCCccccHHHHHHHHHHhh
Q 029269 126 KVKGNVFKNKRVLMESIHKSK 146 (196)
Q Consensus 126 kaKGn~Fknk~~L~e~I~k~k 146 (196)
+-||-+|+|...|.++|++-+
T Consensus 6 kykgrtfrnekelrdfiekfk 26 (28)
T 1fme_A 6 KYKGRTFRNEKELRDFIEKFK 26 (28)
T ss_dssp ESSSCEECCHHHHHHHHHHCC
T ss_pred hhcccccccHHHHHHHHHHhc
Confidence 568999999999999998865
No 10
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=21.66 E-value=46 Score=26.10 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=29.0
Q ss_pred CccchhHHHhhhhhHHHHhhhhcCceeecCCCC
Q 029269 25 DPNEVNEISMANSRQNIRKLVKDGFIIRKPTKI 57 (196)
Q Consensus 25 DPne~~eIa~A~sR~dIRkLIkdG~I~~kp~~~ 57 (196)
-|+....++-..-|+-+..|..+|+|...|..|
T Consensus 86 ~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~~G 118 (150)
T 2v7f_A 86 APERFYKAGGSIIRKALQQLEAAGFVEKVPGKG 118 (150)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred CCccccccchHHHHHHHHHHHHCCCEEEeCCCc
Confidence 499999999999999999999999999887543
No 11
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.41 E-value=36 Score=16.74 Aligned_cols=17 Identities=12% Similarity=0.172 Sum_probs=14.0
Q ss_pred CCccccHHHHHHHHHHh
Q 029269 129 GNVFKNKRVLMESIHKS 145 (196)
Q Consensus 129 Gn~Fknk~~L~e~I~k~ 145 (196)
|..|.+...|..|+...
T Consensus 9 ~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 9 TRAFARQEHLKRHYRSH 25 (29)
T ss_dssp CCBCSSHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHh
Confidence 67899999999997543
No 12
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.53 E-value=40 Score=16.49 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=13.8
Q ss_pred CCccccHHHHHHHHHHh
Q 029269 129 GNVFKNKRVLMESIHKS 145 (196)
Q Consensus 129 Gn~Fknk~~L~e~I~k~ 145 (196)
|..|.+...|..|+...
T Consensus 9 ~k~f~~~~~l~~H~~~H 25 (29)
T 2m0f_A 9 GKQFTTSGNLKRHLRIH 25 (29)
T ss_dssp SCEESCHHHHHHHHHHH
T ss_pred CCccCChhHHHHHHHHh
Confidence 67899999999987543
No 13
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=20.08 E-value=44 Score=18.17 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=14.7
Q ss_pred cCCccccHHHHHHHHHHh
Q 029269 128 KGNVFKNKRVLMESIHKS 145 (196)
Q Consensus 128 KGn~Fknk~~L~e~I~k~ 145 (196)
=|..|.+.+.|..|+...
T Consensus 16 C~k~f~~~~~L~~H~~~H 33 (37)
T 1va1_A 16 CGKVYGKTSHLRAHLRWH 33 (37)
T ss_dssp CCCEESCHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHhc
Confidence 378999999999997543
Done!